chr1	1448889	1450230	chr1	1449389	1449730	-	HERVIP10F-int	chr1	1449389	1449730	LTR	ERV1	chr1	1449688	1449690	+	ATAD3C	ENSG00000215915.9	ENST00000378785.6	protein_coding	chr1:1449689-1470158	TRUE	FALSE	chr1	1449133	1449318	AR:LNCaP	1	.	1449176	1449177	252,56,84
chr1	19979744	19981014	chr1	19980244	19980514	-	MamGyp-int	chr1	19980244	19980514	LTR	Gypsy	chr1	19980406	19980408	-	PLA2G2A	ENSG00000188257.10	ENST00000491964.5	protein_coding	chr1:19975465-19980407	FALSE	TRUE	chr1	19980378	19980611	AR:prostate,LNCaP-abl,VCaP,LNCaP,prostate-cancer	16	.	19980479	19980480	252,56,84
chr1	20027627	20028964	chr1	20028127	20028464	-	LTR46	chr1	20028127	20028464	LTR	ERV1	chr1	20028429	20028431	+	PLA2G5	ENSG00000127472.10	ENST00000465698.5	protein_coding	chr1:20028430-20091158	FALSE	TRUE	chr1	20028208	20028414	AR:prostate,primary-prostate-cancer,VCaP,DU145,DUCAP,LNCaP,PC-3	9	.	20028296	20028297	252,56,84
chr1	20684732	20686020	chr1	20685232	20685520	+	L2d	chr1	20685232	20685520	LINE	L2	chr1	20685282	20685284	-	KIF17	ENSG00000117245.12	ENST00000462858.5	protein_coding	chr1:20666214-20685283	FALSE	TRUE	chr1	20684698	20684936	AR:prostate,MDA-MB-453	2	.	20684854	20684855	252,56,84
chr1	21829905	21831214	chr1	21830405	21830714	+	AluSq	chr1	21830405	21830714	SINE	Alu	chr1	21830712	21830714	-	HSPG2	ENSG00000142798.17	ENST00000486901.1	protein_coding	chr1:21822245-21830713	FALSE	TRUE	chr1	21829969	21830131	AR:MDA-MB-453	1	.	21830055	21830056	252,56,84
chr1	21829905	21831214	chr1	21830405	21830714	+	AluSq	chr1	21830405	21830714	SINE	Alu	chr1	21830712	21830714	-	HSPG2	ENSG00000142798.17	ENST00000486901.1	protein_coding	chr1:21822245-21830713	FALSE	TRUE	chr1	21830958	21831093	AR:MDA-MB-453	1	.	21830973	21830974	252,56,84
chr1	31665739	31667108	chr1	31666239	31666608	+	L2a	chr1	31666239	31666608	LINE	L2	chr1	31666384	31666386	-	COL16A1	ENSG00000084636.17	ENST00000470799.5	protein_coding	chr1:31660585-31666385	TRUE	FALSE	chr1	31665496	31665940	AR:prostate	2	.	31665737	31665738	252,56,84
chr1	31665739	31667108	chr1	31666239	31666608	+	L2a	chr1	31666239	31666608	LINE	L2	chr1	31666384	31666386	-	COL16A1	ENSG00000084636.17	ENST00000470799.5	protein_coding	chr1:31660585-31666385	TRUE	FALSE	chr1	31666138	31666389	AR:prostate,MDA-MB-453	3	.	31666230	31666231	252,56,84
chr1	31665739	31667108	chr1	31666239	31666608	+	L2a	chr1	31666239	31666608	LINE	L2	chr1	31666384	31666386	-	COL16A1	ENSG00000084636.17	ENST00000470799.5	protein_coding	chr1:31660585-31666385	TRUE	FALSE	chr1	31666550	31666789	AR:breast	1	.	31666706	31666707	252,56,84
chr1	31665739	31667108	chr1	31666239	31666608	+	L2a	chr1	31666239	31666608	LINE	L2	chr1	31666384	31666386	-	COL16A1	ENSG00000084636.17	ENST00000470799.5	protein_coding	chr1:31660585-31666385	TRUE	FALSE	chr1	31666730	31666973	AR:prostate	1	.	31666789	31666790	252,56,84
chr1	32352034	32353322	chr1	32352534	32352822	-	AluJb	chr1	32352534	32352822	SINE	Alu	chr1	32352728	32352730	+	TSSK3	ENSG00000162526.6	ENST00000574792.1	protein_coding	chr1:32352729-32354096	TRUE	FALSE	chr1	32352146	32352500	AR:LTAD	1	.	32352331	32352332	252,56,84
chr1	43269446	43270513	chr1	43269946	43270013	+	L2c	chr1	43269946	43270013	LINE	L2	chr1	43269993	43269995	+	TMEM125	ENSG00000179178.10	ENST00000439858.5	protein_coding	chr1:43269994-43274002	TRUE	FALSE	chr1	43269593	43269764	AR:LNCaP	1	.	43269659	43269660	252,56,84
chr1	43269446	43270513	chr1	43269946	43270013	+	L2c	chr1	43269946	43270013	LINE	L2	chr1	43269993	43269995	+	TMEM125	ENSG00000179178.10	ENST00000439858.5	protein_coding	chr1:43269994-43274002	TRUE	FALSE	chr1	43269724	43270018	AR:prostate,VCaP,LNCaP,prostate-cancer,LTAD	19	.	43269877	43269878	252,56,84
chr1	43269446	43270513	chr1	43269946	43270013	+	L2c	chr1	43269946	43270013	LINE	L2	chr1	43269993	43269995	+	TMEM125	ENSG00000179178.10	ENST00000439858.5	protein_coding	chr1:43269994-43274002	TRUE	FALSE	chr1	43270071	43270174	AR:prostate-cancer	1	.	43270087	43270088	252,56,84
chr1	53070385	53071621	chr1	53070885	53071121	-	L2b	chr1	53070885	53071121	LINE	L2	chr1	53070908	53070910	+	PODN	ENSG00000174348.13	ENST00000471210.1	protein_coding	chr1:53070909-53073754	FALSE	TRUE	chr1	53070587	53070849	AR:prostate	1	.	53070761	53070762	252,56,84
chr1	53070385	53071621	chr1	53070885	53071121	-	L2b	chr1	53070885	53071121	LINE	L2	chr1	53070908	53070910	+	PODN	ENSG00000174348.13	ENST00000471210.1	protein_coding	chr1:53070909-53073754	FALSE	TRUE	chr1	53071617	53071787	AR:MDA-MB-453	1	.	53071705	53071706	252,56,84
chr1	53090460	53091636	chr1	53090960	53091136	-	MIRb	chr1	53090960	53091136	SINE	MIR	chr1	53090981	53090983	-	SLC1A7	ENSG00000162383.11	ENST00000488036.5	protein_coding	chr1:53087184-53090982	FALSE	TRUE	chr1	53090718	53090892	AR:MDA-MB-453	2	.	53090830	53090831	252,56,84
chr1	53090460	53091636	chr1	53090960	53091136	-	MIRb	chr1	53090960	53091136	SINE	MIR	chr1	53090981	53090983	-	SLC1A7	ENSG00000162383.11	ENST00000488036.5	protein_coding	chr1:53087184-53090982	FALSE	TRUE	chr1	53091322	53091541	AR:prostate	1	.	53091446	53091447	252,56,84
chr1	58577204	58578315	chr1	58577704	58577815	-	MIRb	chr1	58577704	58577815	SINE	MIR	chr1	58577772	58577774	-	TACSTD2	ENSG00000184292.6	ENST00000371225.3	protein_coding	chr1:58575423-58577773	TRUE	FALSE	chr1	58577170	58577578	AR:prostate,LNCaP-abl,MDA-MB-453,breast,MCF-7,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer	45	.	58577353	58577354	252,56,84
chr1	58577204	58578315	chr1	58577704	58577815	-	MIRb	chr1	58577704	58577815	SINE	MIR	chr1	58577772	58577774	-	TACSTD2	ENSG00000184292.6	ENST00000371225.3	protein_coding	chr1:58575423-58577773	TRUE	FALSE	chr1	58577879	58578168	AR:prostate,22Rv1,LAPC-4,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer	16	.	58578052	58578053	252,56,84
chr1	59673128	59674241	chr1	59673628	59673741	+	L2b	chr1	59673628	59673741	LINE	L2	chr1	59673685	59673687	+	FGGY	ENSG00000172456.17	ENST00000471169.5	protein_coding	chr1:59673686-59762727	TRUE	FALSE	chr1	59672951	59673146	AR:THP-1	1	.	59673025	59673026	252,56,84
chr1	59673128	59674241	chr1	59673628	59673741	+	L2b	chr1	59673628	59673741	LINE	L2	chr1	59673685	59673687	+	FGGY	ENSG00000172456.17	ENST00000471169.5	protein_coding	chr1:59673686-59762727	TRUE	FALSE	chr1	59673237	59673551	AR:PC-3,prostate,DU145,breast-cancer	4	.	59673383	59673384	252,56,84
chr1	59673128	59674241	chr1	59673628	59673741	+	L2b	chr1	59673628	59673741	LINE	L2	chr1	59673685	59673687	+	FGGY	ENSG00000172456.17	ENST00000471169.5	protein_coding	chr1:59673686-59762727	TRUE	FALSE	chr1	59673698	59673898	AR:primary-prostate-cancer	1	.	59673732	59673733	252,56,84
chr1	59673128	59674241	chr1	59673628	59673741	+	L2b	chr1	59673628	59673741	LINE	L2	chr1	59673685	59673687	+	FGGY	ENSG00000172456.17	ENST00000471169.5	protein_coding	chr1:59673686-59762727	TRUE	FALSE	chr1	59674207	59674582	AR:prostate,primary-prostate-cancer,THP-1,VCaP,LNCaP,prostate-cancer	33	.	59674387	59674388	252,56,84
chr1	109187459	109188564	chr1	109187959	109188064	-	L2a	chr1	109187959	109188064	LINE	L2	chr1	109187978	109187980	+	KIAA1324	ENSG00000116299.16	ENST00000369936.2	protein_coding	chr1:109187979-109206781	TRUE	FALSE	chr1	109188304	109188531	AR:MCF-7	1	.	109188389	109188390	252,56,84
chr1	109703146	109707193	chr1	109703646	109706693	+	HERVK11-int	chr1	109703646	109706693	LTR	ERVK	chr1	109705230	109705232	+	GSTM2	ENSG00000213366.12	ENST00000624726.1	protein_coding	chr1:109705231-109709551	TRUE	FALSE	chr1	109705575	109705701	AR:MCF-7	1	.	109705662	109705663	252,56,84
chr1	162596643	162597851	chr1	162597143	162597351	+	MER3	chr1	162597143	162597351	DNA	hAT-Charlie	chr1	162597240	162597242	+	UAP1	ENSG00000117143.13	ENST00000486089.1	protein_coding	chr1:162597241-162599799	FALSE	TRUE	chr1	162596900	162597106	AR:22Rv1	1	.	162596992	162596993	252,56,84
chr1	203090030	203091209	chr1	203090530	203090709	-	MIR3	chr1	203090530	203090709	SINE	MIR	chr1	203090653	203090655	+	ADORA1	ENSG00000163485.16	ENST00000309502.7	protein_coding	chr1:203090654-203167404	TRUE	FALSE	chr1	203089862	203090035	AR:MCF-7	1	.	203089941	203089942	252,56,84
chr1	205526699	205528000	chr1	205527199	205527500	+	AluJb	chr1	205527199	205527500	SINE	Alu	chr1	205527409	205527411	+	CDK18	ENSG00000117266.15	ENST00000489617.5	protein_coding	chr1:205527410-205532793	TRUE	FALSE	chr1	205526646	205526940	AR:LNCaP,LNCaP-95	2	.	205526753	205526754	252,56,84
chr1	205526699	205528000	chr1	205527199	205527500	+	AluJb	chr1	205527199	205527500	SINE	Alu	chr1	205527409	205527411	+	CDK18	ENSG00000117266.15	ENST00000489617.5	protein_coding	chr1:205527410-205532793	TRUE	FALSE	chr1	205527612	205527768	AR:MDA-MB-453	1	.	205527692	205527693	252,56,84
chr10	17232456	17233747	chr10	17232956	17233247	-	AluSz	chr10	17232956	17233247	SINE	Alu	chr10	17233224	17233226	+	VIM	ENSG00000026025.15	ENST00000495528.1	protein_coding	chr10:17233225-17235034	FALSE	TRUE	chr10	17233577	17233929	AR:VCaP,LNCaP,prostate-cancer,22Rv1	19	.	17233782	17233783	252,56,84
chr10	110879819	110880878	chr10	110880319	110880378	-	L2d2	chr10	110880319	110880378	LINE	L2	chr10	110880318	110880320	+	PDCD4	ENSG00000150593.17	ENST00000492932.5	protein_coding	chr10:110880319-110887798	TRUE	FALSE	chr10	110880072	110880304	AR:breast-cancer,LNCaP	2	.	110880216	110880217	252,56,84
chr10	113763899	113766003	chr10	113764399	113765503	-	L1ME1	chr10	113764399	113765503	LINE	L1	chr10	113764818	113764820	+	PLEKHS1	ENSG00000148735.14	ENST00000369310.7	protein_coding	chr10:113764819-113777726	TRUE	FALSE	chr10	113764423	113764711	AR:primary-prostate-cancer	1	.	113764569	113764570	252,56,84
chr10	113763899	113766003	chr10	113764399	113765503	-	L1ME1	chr10	113764399	113765503	LINE	L1	chr10	113764818	113764820	+	PLEKHS1	ENSG00000148735.14	ENST00000369310.7	protein_coding	chr10:113764819-113777726	TRUE	FALSE	chr10	113764654	113764867	AR:LNCaP-clone-FGC	1	.	113764763	113764764	252,56,84
chr10	113763899	113766003	chr10	113764399	113765503	-	L1ME1	chr10	113764399	113765503	LINE	L1	chr10	113764818	113764820	+	PLEKHS1	ENSG00000148735.14	ENST00000369310.7	protein_coding	chr10:113764819-113777726	TRUE	FALSE	chr10	113765298	113765687	AR:LNCaP-clone-FGC	1	.	113765454	113765455	252,56,84
chr11	2375601	2376785	chr11	2376101	2376285	-	MER3	chr11	2376101	2376285	DNA	hAT-Charlie	chr11	2376176	2376178	+	CD81	ENSG00000110651.11	ENST00000475945.6	protein_coding	chr11:2376177-2395900	TRUE	FALSE	chr11	2375805	2376194	AR:prostate,LNCaP-95,epididymis,22Rv1,VCaP,LNCaP,DUCAP,DU145,PC-3,prostate-cancer,LTAD	62	.	2376034	2376035	252,56,84
chr11	7676566	7677944	chr11	7677066	7677444	-	THE1C	chr11	7677066	7677444	LTR	ERVL-MaLR	chr11	7677221	7677223	-	CYB5R2	ENSG00000166394.14	ENST00000524608.5	protein_coding	chr11:7669205-7677222	TRUE	FALSE	chr11	7677288	7677483	AR:THP-1	1	.	7677329	7677330	252,56,84
chr11	7676566	7677944	chr11	7677066	7677444	-	THE1C	chr11	7677066	7677444	LTR	ERVL-MaLR	chr11	7677221	7677223	-	CYB5R2	ENSG00000166394.14	ENST00000524608.5	protein_coding	chr11:7669205-7677222	TRUE	FALSE	chr11	7677625	7677862	AR:prostate	1	.	7677806	7677807	252,56,84
chr11	7676566	7677944	chr11	7677066	7677444	-	THE1C	chr11	7677066	7677444	LTR	ERVL-MaLR	chr11	7677221	7677223	-	CYB5R2	ENSG00000166394.14	ENST00000524608.5	protein_coding	chr11:7669205-7677222	TRUE	FALSE	chr11	7677827	7678146	AR:PC-3,prostate	3	.	7677995	7677996	252,56,84
chr11	8697163	8698346	chr11	8697663	8697846	-	MIR	chr11	8697663	8697846	SINE	MIR	chr11	8697772	8697774	-	ST5	ENSG00000166444.18	ENST00000532738.1	protein_coding	chr11:8696436-8697773	TRUE	FALSE	chr11	8698286	8698402	AR:LNCaP	1	.	8698299	8698300	252,56,84
chr11	20113809	20114906	chr11	20114309	20114406	-	MIRb	chr11	20114309	20114406	SINE	MIR	chr11	20114382	20114384	+	NAV2	ENSG00000166833.19	ENST00000528923.1	protein_coding	chr11:20114383-20118282	TRUE	FALSE	chr11	20113922	20114183	AR:MCF-7	1	.	20114042	20114043	252,56,84
chr11	20113809	20114906	chr11	20114309	20114406	-	MIRb	chr11	20114309	20114406	SINE	MIR	chr11	20114382	20114384	+	NAV2	ENSG00000166833.19	ENST00000528923.1	protein_coding	chr11:20114383-20118282	TRUE	FALSE	chr11	20114275	20114433	AR:MCF-7	1	.	20114374	20114375	252,56,84
chr11	26330889	26332050	chr11	26331389	26331550	+	MIRb	chr11	26331389	26331550	SINE	MIR	chr11	26331423	26331425	+	ANO3	ENSG00000134343.12	ENST00000256737.7	protein_coding	chr11:26331424-26663288	FALSE	TRUE	chr11	26332005	26332251	AR:LNCaP-abl,prostate,MDA-MB-453,LNCaP-95,myofibroblast,22Rv1,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer	22	.	26332106	26332107	252,56,84
chr11	44563874	44564977	chr11	44564374	44564477	+	MIRc	chr11	44564374	44564477	SINE	MIR	chr11	44564426	44564428	+	CD82	ENSG00000085117.11	ENST00000526958.5	protein_coding	chr11:44564427-44615295	TRUE	FALSE	chr11	44563926	44564079	AR:endometrial-stromal-cell	1	.	44563983	44563984	252,56,84
chr11	44563874	44564977	chr11	44564374	44564477	+	MIRc	chr11	44564374	44564477	SINE	MIR	chr11	44564426	44564428	+	CD82	ENSG00000085117.11	ENST00000526958.5	protein_coding	chr11:44564427-44615295	TRUE	FALSE	chr11	44564510	44564590	AR:prostate-cancer	1	.	44564569	44564570	252,56,84
chr11	44563874	44564977	chr11	44564374	44564477	+	MIRc	chr11	44564374	44564477	SINE	MIR	chr11	44564426	44564428	+	CD82	ENSG00000085117.11	ENST00000526958.5	protein_coding	chr11:44564427-44615295	TRUE	FALSE	chr11	44564754	44565083	AR:prostate,LNCaP-C4-2B,MDA-MB-453,LNCaP-abl,LNCaP-95,primary-prostate-cancer,breast,endometrial-stromal-cell,22Rv1,fibroblast,VCaP,LNCaP,DU145,LAPC-4,DUCAP,MCF-7,LNCaP-clone-FGC,prostate-cancer,breast-cancer,LTAD	140	.	44564896	44564897	252,56,84
chr11	44563874	44564977	chr11	44564374	44564477	+	MIRc	chr11	44564374	44564477	SINE	MIR	chr11	44564426	44564428	+	CD82	ENSG00000085117.11	ENST00000526958.5	protein_coding	chr11:44564427-44615295	TRUE	FALSE	chr11	44564255	44564491	AR:PC-3	1	.	44564358	44564359	252,56,84
chr11	45920997	45922228	chr11	45921497	45921728	-	L2a	chr11	45921497	45921728	LINE	L2	chr11	45921620	45921622	+	LARGE2	ENSG00000165905.17	ENST00000529052.5	protein_coding	chr11:45921621-45929096	TRUE	FALSE	chr11	45921147	45921264	AR:LNCaP-abl	1	.	45921211	45921212	252,56,84
chr11	45920997	45922228	chr11	45921497	45921728	-	L2a	chr11	45921497	45921728	LINE	L2	chr11	45921620	45921622	+	LARGE2	ENSG00000165905.17	ENST00000529052.5	protein_coding	chr11:45921621-45929096	TRUE	FALSE	chr11	45921491	45921740	AR:prostate,primary-prostate-cancer,breast,LNCaP,prostate-cancer	13	.	45921599	45921600	252,56,84
chr11	45920997	45922228	chr11	45921497	45921728	-	L2a	chr11	45921497	45921728	LINE	L2	chr11	45921620	45921622	+	LARGE2	ENSG00000165905.17	ENST00000529052.5	protein_coding	chr11:45921621-45929096	TRUE	FALSE	chr11	45922118	45922494	AR:prostate,MDA-MB-453,LNCaP-95,breast,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer,breast-cancer	30	.	45922275	45922276	252,56,84
chr11	69336559	69338381	chr11	69337059	69337881	-	L1ME1	chr11	69337059	69337881	LINE	L1	chr11	69337359	69337361	+	MYEOV	ENSG00000172927.7	ENST00000541137.5	protein_coding	chr11:69337360-69367726	TRUE	FALSE	chr11	69337298	69337522	AR:PC-3,THP-1	2	.	69337419	69337420	252,56,84
chr11	69336559	69338381	chr11	69337059	69337881	-	L1ME1	chr11	69337059	69337881	LINE	L1	chr11	69337359	69337361	+	MYEOV	ENSG00000172927.7	ENST00000541137.5	protein_coding	chr11:69337360-69367726	TRUE	FALSE	chr11	69337965	69338161	AR:PC-3	1	.	69338086	69338087	252,56,84
chr11	70164452	70165889	chr11	70164952	70165389	-	MLT1C2	chr11	70164952	70165389	LTR	ERVL-MaLR	chr11	70165361	70165363	+	ANO1	ENSG00000131620.17	ENST00000529636.5	protein_coding	chr11:70165362-70180045	TRUE	FALSE	chr11	70164505	70164661	AR:VCaP	1	.	70164581	70164582	252,56,84
chr11	70164452	70165889	chr11	70164952	70165389	-	MLT1C2	chr11	70164952	70165389	LTR	ERVL-MaLR	chr11	70165361	70165363	+	ANO1	ENSG00000131620.17	ENST00000529636.5	protein_coding	chr11:70165362-70180045	TRUE	FALSE	chr11	70164810	70165122	AR:MDA-MB-453,breast	2	.	70164928	70164929	252,56,84
chr11	70164452	70165889	chr11	70164952	70165389	-	MLT1C2	chr11	70164952	70165389	LTR	ERVL-MaLR	chr11	70165361	70165363	+	ANO1	ENSG00000131620.17	ENST00000529636.5	protein_coding	chr11:70165362-70180045	TRUE	FALSE	chr11	70165506	70165736	AR:MDA-MB-453,breast	2	.	70165650	70165651	252,56,84
chr11	72579214	72580405	chr11	72579714	72579905	+	MIR3	chr11	72579714	72579905	SINE	MIR	chr11	72579895	72579897	-	PDE2A	ENSG00000186642.15	ENST00000544239.1	protein_coding	chr11:72578961-72579896	FALSE	TRUE	chr11	72580025	72580258	AR:breast	1	.	72580084	72580085	252,56,84
chr11	74070257	74071675	chr11	74070757	74071175	+	L2c	chr11	74070757	74071175	LINE	L2	chr11	74070868	74070870	-	C2CD3	ENSG00000168014.16	ENST00000542484.1	protein_coding	chr11:74049519-74070869	TRUE	FALSE	chr11	74070170	74070378	AR:prostate	1	.	74070204	74070205	252,56,84
chr11	74070257	74071675	chr11	74070757	74071175	+	L2c	chr11	74070757	74071175	LINE	L2	chr11	74070868	74070870	-	C2CD3	ENSG00000168014.16	ENST00000542484.1	protein_coding	chr11:74049519-74070869	TRUE	FALSE	chr11	74070422	74070667	AR:LNCaP,A-375	2	.	74070559	74070560	252,56,84
chr11	74070257	74071675	chr11	74070757	74071175	+	L2c	chr11	74070757	74071175	LINE	L2	chr11	74070868	74070870	-	C2CD3	ENSG00000168014.16	ENST00000542484.1	protein_coding	chr11:74049519-74070869	TRUE	FALSE	chr11	74071033	74071381	AR:LNCaP-abl,prostate,MDA-MB-453,LNCaP-clone-FGC,LNCaP-95,primary-prostate-cancer,PC-3,breast,22Rv1,MCF-7,VCaP,LNCaP,DUCAP,breast-cancer,prostate-cancer,LTAD	126	.	74071187	74071188	252,56,84
chr11	101915901	101917094	chr11	101916401	101916594	+	L2a	chr11	101916401	101916594	LINE	L2	chr11	101916521	101916523	-	ANGPTL5	ENSG00000187151.7	ENST00000334289.7	protein_coding	chr11:101890674-101916522	FALSE	TRUE	chr11	101916033	101916272	AR:A-375	1	.	101916136	101916137	252,56,84
chr11	102335810	102337096	chr11	102336310	102336596	+	AluJb	chr11	102336310	102336596	SINE	Alu	chr11	102336520	102336522	+	BIRC3	ENSG00000023445.13	ENST00000527336.1	protein_coding	chr11:102336521-102337291	TRUE	FALSE	chr11	102335974	102336150	AR:VCaP,LHSAR	2	.	102336073	102336074	252,56,84
chr11	102335810	102337096	chr11	102336310	102336596	+	AluJb	chr11	102336310	102336596	SINE	Alu	chr11	102336520	102336522	+	BIRC3	ENSG00000023445.13	ENST00000527336.1	protein_coding	chr11:102336521-102337291	TRUE	FALSE	chr11	102336894	102337142	AR:PC-3,DU145	2	.	102337006	102337007	252,56,84
chr11	120125747	120127043	chr11	120126247	120126543	-	AluSx	chr11	120126247	120126543	SINE	Alu	chr11	120126356	120126358	-	TRIM29	ENSG00000137699.16	ENST00000530470.1	protein_coding	chr11:120122952-120126357	TRUE	FALSE	chr11	120125616	120125858	AR:PC-3	1	.	120125727	120125728	252,56,84
chr12	6355712	6356932	chr12	6356212	6356432	+	L2d2	chr12	6356212	6356432	LINE	L2	chr12	6356292	6356294	-	SCNN1A	ENSG00000111319.12	ENST00000536087.1	protein_coding	chr12:6355392-6356293	TRUE	FALSE	chr12	6355540	6355742	AR:MCF-7,LNCaP	2	.	6355686	6355687	252,56,84
chr12	6355712	6356932	chr12	6356212	6356432	+	L2d2	chr12	6356212	6356432	LINE	L2	chr12	6356292	6356294	-	SCNN1A	ENSG00000111319.12	ENST00000536087.1	protein_coding	chr12:6355392-6356293	TRUE	FALSE	chr12	6356234	6356474	AR:THP-1,22Rv1	2	.	6356369	6356370	252,56,84
chr12	10224016	10226697	chr12	10224516	10226197	-	LTR12C	chr12	10224516	10226197	LTR	ERV1	chr12	10226065	10226067	+	KLRD1	ENSG00000134539.16	ENST00000540271.1	protein_coding	chr12:10226066-10315009	TRUE	FALSE	chr12	10226541	10226712	AR:LNCaP	1	.	10226659	10226660	252,56,84
chr12	21394510	21401539	chr12	21395010	21401039	+	L1PA2	chr12	21395010	21401039	LINE	L1	chr12	21395436	21395438	-	SLCO1A2	ENSG00000084453.16	ENST00000307378.10	protein_coding	chr12:21264600-21395437	TRUE	FALSE	chr12	21401283	21401540	AR:LNCaP-abl,22Rv1	3	.	21401408	21401409	252,56,84
chr12	47741573	47742829	chr12	47742073	47742329	+	Charlie7a	chr12	47742073	47742329	DNA	hAT-Charlie	chr12	47742291	47742293	-	RAPGEF3	ENSG00000079337.15	ENST00000488250.5	protein_coding	chr12:47737257-47742292	FALSE	TRUE	chr12	47742123	47742322	AR:22Rv1	1	.	47742159	47742160	252,56,84
chr12	47741573	47742829	chr12	47742073	47742329	+	Charlie7a	chr12	47742073	47742329	DNA	hAT-Charlie	chr12	47742291	47742293	-	RAPGEF3	ENSG00000079337.15	ENST00000488250.5	protein_coding	chr12:47737257-47742292	FALSE	TRUE	chr12	47742251	47742516	AR:LNCaP-abl,LNCaP,22Rv1	4	.	47742384	47742385	252,56,84
chr12	47741573	47742829	chr12	47742073	47742329	+	Charlie7a	chr12	47742073	47742329	DNA	hAT-Charlie	chr12	47742291	47742293	-	RAPGEF3	ENSG00000079337.15	ENST00000488250.5	protein_coding	chr12:47737257-47742292	FALSE	TRUE	chr12	47742617	47742705	AR:prostate-cancer	1	.	47742648	47742649	252,56,84
chr12	52042912	52044161	chr12	52043412	52043661	-	LFSINE_Vert	chr12	52043412	52043661	SINE	tRNA	chr12	52043424	52043426	+	NR4A1	ENSG00000123358.19	ENST00000549102.1	protein_coding	chr12:52043425-52054439	FALSE	TRUE	chr12	52042925	52043345	AR:prostate	1	.	52042964	52042965	252,56,84
chr12	52042912	52044161	chr12	52043412	52043661	-	LFSINE_Vert	chr12	52043412	52043661	SINE	tRNA	chr12	52043424	52043426	+	NR4A1	ENSG00000123358.19	ENST00000549102.1	protein_coding	chr12:52043425-52054439	FALSE	TRUE	chr12	52043311	52043480	AR:LNCaP	1	.	52043391	52043392	252,56,84
chr12	52042912	52044161	chr12	52043412	52043661	-	LFSINE_Vert	chr12	52043412	52043661	SINE	tRNA	chr12	52043424	52043426	+	NR4A1	ENSG00000123358.19	ENST00000549102.1	protein_coding	chr12:52043425-52054439	FALSE	TRUE	chr12	52043576	52043846	AR:prostate,breast,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer,LTAD	37	.	52043702	52043703	252,56,84
chr12	52042912	52044161	chr12	52043412	52043661	-	LFSINE_Vert	chr12	52043412	52043661	SINE	tRNA	chr12	52043424	52043426	+	NR4A1	ENSG00000123358.19	ENST00000549102.1	protein_coding	chr12:52043425-52054439	FALSE	TRUE	chr12	52044031	52044234	AR:prostate,LNCaP	3	.	52044095	52044096	252,56,84
chr12	52247324	52248501	chr12	52247824	52248001	-	MIRb	chr12	52247824	52248001	SINE	MIR	chr12	52247917	52247919	+	KRT7	ENSG00000135480.15	ENST00000549638.1	protein_coding	chr12:52247918-52248925	TRUE	FALSE	chr12	52247371	52247625	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-95,breast,MCF-7,prostate-cancer	14	.	52247493	52247494	252,56,84
chr12	52247324	52248501	chr12	52247824	52248001	-	MIRb	chr12	52247824	52248001	SINE	MIR	chr12	52247917	52247919	+	KRT7	ENSG00000135480.15	ENST00000549638.1	protein_coding	chr12:52247918-52248925	TRUE	FALSE	chr12	52248497	52248736	AR:breast	1	.	52248579	52248580	252,56,84
chr12	124288585	124289667	chr12	124289085	124289167	-	MIRc	chr12	124289085	124289167	SINE	MIR	chr12	124289163	124289165	+	RFLNA	ENSG00000178882.14	ENST00000324038.6	protein_coding	chr12:124289164-124316022	TRUE	FALSE	chr12	124289225	124289463	AR:prostate,MDA-MB-453,LNCaP-95,LNCaP,LNCaP-clone-FGC,prostate-cancer	14	.	124289328	124289329	252,56,84
chr12	124288585	124289667	chr12	124289085	124289167	-	MIRc	chr12	124289085	124289167	SINE	MIR	chr12	124289163	124289165	+	RFLNA	ENSG00000178882.14	ENST00000324038.6	protein_coding	chr12:124289164-124316022	TRUE	FALSE	chr12	124289531	124289920	AR:prostate,MDA-MB-453,A-375	3	.	124289839	124289840	252,56,84
chr14	67570523	67571877	chr14	67571023	67571377	-	L1ME3G	chr14	67571023	67571377	LINE	L1	chr14	67571062	67571064	+	PLEKHH1	ENSG00000054690.13	ENST00000557971.5	protein_coding	chr14:67571063-67589440	TRUE	FALSE	chr14	67571356	67571558	AR:VCaP,prostate,prostate-cancer,LNCaP	9	.	67571450	67571451	252,56,84
chr14	67570523	67571877	chr14	67571023	67571377	-	L1ME3G	chr14	67571023	67571377	LINE	L1	chr14	67571062	67571064	+	PLEKHH1	ENSG00000054690.13	ENST00000557971.5	protein_coding	chr14:67571063-67589440	TRUE	FALSE	chr14	67571669	67571821	AR:MCF-7	1	.	67571774	67571775	252,56,84
chr14	95455380	95456784	chr14	95455880	95456284	+	MER113	chr14	95455880	95456284	DNA	hAT-Charlie	chr14	95456188	95456190	-	SYNE3	ENSG00000176438.12	ENST00000554873.5	protein_coding	chr14:95417604-95456189	FALSE	TRUE	chr14	95455373	95455524	AR:MCF-7,MDA-MB-453	2	.	95455455	95455456	252,56,84
chr15	40337545	40338698	chr15	40338045	40338198	+	MIR	chr15	40338045	40338198	SINE	MIR	chr15	40338132	40338134	-	C15orf52	ENSG00000188549.12	ENST00000397536.6	protein_coding	chr15:40331452-40338133	TRUE	FALSE	chr15	40337432	40337572	AR:MDA-MB-453	1	.	40337511	40337512	252,56,84
chr15	40337545	40338698	chr15	40338045	40338198	+	MIR	chr15	40338045	40338198	SINE	MIR	chr15	40338132	40338134	-	C15orf52	ENSG00000188549.12	ENST00000397536.6	protein_coding	chr15:40331452-40338133	TRUE	FALSE	chr15	40337577	40337856	AR:prostate,MDA-MB-453	4	.	40337730	40337731	252,56,84
chr15	40337545	40338698	chr15	40338045	40338198	+	MIR	chr15	40338045	40338198	SINE	MIR	chr15	40338132	40338134	-	C15orf52	ENSG00000188549.12	ENST00000397536.6	protein_coding	chr15:40331452-40338133	TRUE	FALSE	chr15	40338132	40338267	AR:MDA-MB-453	1	.	40338183	40338184	252,56,84
chr15	40337545	40338698	chr15	40338045	40338198	+	MIR	chr15	40338045	40338198	SINE	MIR	chr15	40338132	40338134	-	C15orf52	ENSG00000188549.12	ENST00000397536.6	protein_coding	chr15:40331452-40338133	TRUE	FALSE	chr15	40338442	40338889	AR:prostate	1	.	40338586	40338587	252,56,84
chr15	45138121	45139288	chr15	45138621	45138788	-	MIR3	chr15	45138621	45138788	SINE	MIR	chr15	45138645	45138647	+	DUOX1	ENSG00000137857.17	ENST00000558991.1	protein_coding	chr15:45138646-45141039	TRUE	FALSE	chr15	45138334	45138624	AR:VCaP	1	.	45138539	45138540	252,56,84
chr15	45138121	45139288	chr15	45138621	45138788	-	MIR3	chr15	45138621	45138788	SINE	MIR	chr15	45138645	45138647	+	DUOX1	ENSG00000137857.17	ENST00000558991.1	protein_coding	chr15:45138646-45141039	TRUE	FALSE	chr15	45139032	45139392	AR:LNCaP	1	.	45139190	45139191	252,56,84
chr15	49876158	49877346	chr15	49876658	49876846	-	MIRb	chr15	49876658	49876846	SINE	MIR	chr15	49876694	49876696	-	ATP8B4	ENSG00000104043.14	ENST00000558498.5	protein_coding	chr15:49858238-49876695	FALSE	TRUE	chr15	49876421	49876782	AR:prostate,VCaP-LTAD,LNCaP-clone-FGC,LNCaP-abl,primary-prostate-cancer,22Rv1,VCaP,LNCaP,DUCAP,DU145,PC-3,prostate-cancer,LTAD	94	.	49876587	49876588	252,56,84
chr15	49876158	49877346	chr15	49876658	49876846	-	MIRb	chr15	49876658	49876846	SINE	MIR	chr15	49876694	49876696	-	ATP8B4	ENSG00000104043.14	ENST00000558498.5	protein_coding	chr15:49858238-49876695	FALSE	TRUE	chr15	49877063	49877350	AR:VCaP	1	.	49877170	49877171	252,56,84
chr15	51337976	51339490	chr15	51338476	51338990	-	MER21A	chr15	51338476	51338990	LTR	ERVL	chr15	51338609	51338611	-	CYP19A1	ENSG00000137869.14	ENST00000396402.5	protein_coding	chr15:51208057-51338610	FALSE	TRUE	chr15	51339155	51339272	AR:LNCaP-abl	1	.	51339195	51339196	252,56,84
chr15	51337976	51339490	chr15	51338476	51338990	-	MER21A	chr15	51338476	51338990	LTR	ERVL	chr15	51338595	51338597	-	CYP19A1	ENSG00000137869.14	ENST00000396404.8	protein_coding	chr15:51210181-51338596	FALSE	TRUE	chr15	51339155	51339272	AR:LNCaP-abl	1	.	51339195	51339196	252,56,84
chr15	51375596	51377811	chr15	51376096	51377311	-	Tigger3b	chr15	51376096	51377311	DNA	TcMar-Tigger	chr15	51377257	51377259	+	GLDN	ENSG00000186417.13	ENST00000464150.2	protein_coding	chr15:51377258-51385552	FALSE	TRUE	chr15	51377041	51377279	AR:fibroblast	1	.	51377149	51377150	252,56,84
chr15	51375596	51377811	chr15	51376096	51377311	-	Tigger3b	chr15	51376096	51377311	DNA	TcMar-Tigger	chr15	51377257	51377259	+	GLDN	ENSG00000186417.13	ENST00000464150.2	protein_coding	chr15:51377258-51385552	FALSE	TRUE	chr15	51377500	51377765	AR:prostate	5	.	51377639	51377640	252,56,84
chr15	51375596	51377811	chr15	51376096	51377311	-	Tigger3b	chr15	51376096	51377311	DNA	TcMar-Tigger	chr15	51377257	51377259	+	GLDN	ENSG00000186417.13	ENST00000396399.6	protein_coding	chr15:51377258-51408005	FALSE	TRUE	chr15	51377041	51377279	AR:fibroblast	1	.	51377149	51377150	252,56,84
chr15	51375596	51377811	chr15	51376096	51377311	-	Tigger3b	chr15	51376096	51377311	DNA	TcMar-Tigger	chr15	51377257	51377259	+	GLDN	ENSG00000186417.13	ENST00000396399.6	protein_coding	chr15:51377258-51408005	FALSE	TRUE	chr15	51377500	51377765	AR:prostate	5	.	51377639	51377640	252,56,84
chr15	74195780	74196831	chr15	74196280	74196331	-	L2a	chr15	74196280	74196331	LINE	L2	chr15	74196288	74196290	-	STRA6	ENSG00000137868.18	ENST00000545137.5	protein_coding	chr15:74179469-74196289	TRUE	FALSE	chr15	74195972	74196149	AR:PC-3	1	.	74196087	74196088	252,56,84
chr15	74195780	74196831	chr15	74196280	74196331	-	L2a	chr15	74196280	74196331	LINE	L2	chr15	74196288	74196290	-	STRA6	ENSG00000137868.18	ENST00000545137.5	protein_coding	chr15:74179469-74196289	TRUE	FALSE	chr15	74196326	74196530	AR:fibroblast,endometrial-stromal-cell,MCF-7	3	.	74196453	74196454	252,56,84
chr15	89837428	89838655	chr15	89837928	89838155	+	MIRb	chr15	89837928	89838155	SINE	MIR	chr15	89837953	89837955	-	AP3S2	ENSG00000157823.16	ENST00000558926.1	protein_coding	chr15:89835424-89837954	TRUE	FALSE	chr15	89837165	89837645	AR:breast-cancer,MCF-7,breast	8	.	89837380	89837381	252,56,84
chr15	89837428	89838655	chr15	89837928	89838155	+	MIRb	chr15	89837928	89838155	SINE	MIR	chr15	89837953	89837955	-	AP3S2	ENSG00000157823.16	ENST00000558926.1	protein_coding	chr15:89835424-89837954	TRUE	FALSE	chr15	89837646	89837940	AR:THP-1,prostate	2	.	89837767	89837768	252,56,84
chr15	101308570	101309775	chr15	101309070	101309275	-	MLT1E3	chr15	101309070	101309275	LTR	ERVL-MaLR	chr15	101309111	101309113	-	PCSK6	ENSG00000140479.16	ENST00000559499.1	protein_coding	chr15:101303931-101309112	TRUE	FALSE	chr15	101309378	101309576	AR:prostate	1	.	101309426	101309427	252,56,84
chr16	283362	284666	chr16	283862	284166	-	AluSp	chr16	283862	284166	SINE	Alu	chr16	284151	284153	+	PDIA2	ENSG00000185615.15	ENST00000482665.1	protein_coding	chr16:284152-287208	FALSE	TRUE	chr16	284284	284526	AR:LNCaP,MDA-MB-453	3	.	284426	284427	252,56,84
chr16	760235	761340	chr16	760735	760840	-	MIRc	chr16	760735	760840	SINE	MIR	chr16	760761	760763	+	MSLN	ENSG00000102854.15	ENST00000563941.5	protein_coding	chr16:760762-768862	TRUE	FALSE	chr16	760157	760417	AR:MDA-MB-453	1	.	760194	760195	252,56,84
chr16	760235	761340	chr16	760735	760840	-	MIRc	chr16	760735	760840	SINE	MIR	chr16	760761	760763	+	MSLN	ENSG00000102854.15	ENST00000563941.5	protein_coding	chr16:760762-768862	TRUE	FALSE	chr16	760882	761134	AR:prostate,MDA-MB-453,myofibroblast	3	.	761025	761026	252,56,84
chr16	760235	761340	chr16	760735	760840	-	MIRc	chr16	760735	760840	SINE	MIR	chr16	760764	760766	+	MSLN	ENSG00000102854.15	ENST00000545450.6	protein_coding	chr16:760765-768858	TRUE	FALSE	chr16	760157	760417	AR:MDA-MB-453	1	.	760194	760195	252,56,84
chr16	760235	761340	chr16	760735	760840	-	MIRc	chr16	760735	760840	SINE	MIR	chr16	760764	760766	+	MSLN	ENSG00000102854.15	ENST00000545450.6	protein_coding	chr16:760765-768858	TRUE	FALSE	chr16	760882	761134	AR:prostate,MDA-MB-453,myofibroblast	3	.	761025	761026	252,56,84
chr16	4354969	4356268	chr16	4355469	4355768	-	AluY	chr16	4355469	4355768	SINE	Alu	chr16	4355606	4355608	-	PAM16	ENSG00000217930.7	ENST00000576217.1	protein_coding	chr16:4340251-4355607	FALSE	TRUE	chr16	4354755	4355299	AR:prostate	1	.	4355196	4355197	252,56,84
chr16	20673604	20675108	chr16	20674104	20674608	+	LTR15	chr16	20674104	20674608	LTR	ERV1	chr16	20674509	20674511	+	ACSM3	ENSG00000005187.11	ENST00000501740.6	protein_coding	chr16:20674510-20755608	TRUE	FALSE	chr16	20673898	20674111	AR:MCF-7	1	.	20673990	20673991	252,56,84
chr16	20673604	20675108	chr16	20674104	20674608	+	LTR15	chr16	20674104	20674608	LTR	ERV1	chr16	20674509	20674511	+	ACSM3	ENSG00000005187.11	ENST00000501740.6	protein_coding	chr16:20674510-20755608	TRUE	FALSE	chr16	20674678	20674831	AR:MCF-7	1	.	20674788	20674789	252,56,84
chr16	20673604	20675108	chr16	20674104	20674608	+	LTR15	chr16	20674104	20674608	LTR	ERV1	chr16	20674530	20674532	+	ACSM3	ENSG00000005187.11	ENST00000614721.1	protein_coding	chr16:20674531-20682176	TRUE	FALSE	chr16	20673898	20674111	AR:MCF-7	1	.	20673990	20673991	252,56,84
chr16	20673604	20675108	chr16	20674104	20674608	+	LTR15	chr16	20674104	20674608	LTR	ERV1	chr16	20674530	20674532	+	ACSM3	ENSG00000005187.11	ENST00000614721.1	protein_coding	chr16:20674531-20682176	TRUE	FALSE	chr16	20674678	20674831	AR:MCF-7	1	.	20674788	20674789	252,56,84
chr16	20674109	20676744	chr16	20674609	20676244	+	HERV15-int	chr16	20674609	20676244	LTR	ERV1	chr16	20676160	20676162	-	ACSM1	ENSG00000166743.9	ENST00000519031.5	protein_coding	chr16:20623237-20676161	TRUE	FALSE	chr16	20673898	20674111	AR:MCF-7	1	.	20673990	20673991	252,56,84
chr16	20674109	20676744	chr16	20674609	20676244	+	HERV15-int	chr16	20674609	20676244	LTR	ERV1	chr16	20676160	20676162	-	ACSM1	ENSG00000166743.9	ENST00000519031.5	protein_coding	chr16:20623237-20676161	TRUE	FALSE	chr16	20674678	20674831	AR:MCF-7	1	.	20674788	20674789	252,56,84
chr16	20674109	20676744	chr16	20674609	20676244	+	HERV15-int	chr16	20674609	20676244	LTR	ERV1	chr16	20676160	20676162	-	ACSM1	ENSG00000166743.9	ENST00000519031.5	protein_coding	chr16:20623237-20676161	TRUE	FALSE	chr16	20675800	20676013	AR:prostate,prostate-cancer,breast	6	.	20675912	20675913	252,56,84
chr16	20674109	20676744	chr16	20674609	20676244	+	HERV15-int	chr16	20674609	20676244	LTR	ERV1	chr16	20676160	20676162	-	ACSM1	ENSG00000166743.9	ENST00000519031.5	protein_coding	chr16:20623237-20676161	TRUE	FALSE	chr16	20676148	20676238	AR:prostate-cancer	1	.	20676184	20676185	252,56,84
chr16	20674109	20676744	chr16	20674609	20676244	+	HERV15-int	chr16	20674609	20676244	LTR	ERV1	chr16	20676160	20676162	-	ACSM1	ENSG00000166743.9	ENST00000519031.5	protein_coding	chr16:20623237-20676161	TRUE	FALSE	chr16	20676691	20676953	AR:prostate	1	.	20676838	20676839	252,56,84
chr16	20763938	20765230	chr16	20764438	20764730	+	AluSx1	chr16	20764438	20764730	SINE	Alu	chr16	20764682	20764684	+	ACSM3	ENSG00000005187.11	ENST00000561795.5	protein_coding	chr16:20764683-20777417	TRUE	FALSE	chr16	20763751	20764062	AR:prostate,primary-prostate-cancer,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer	29	.	20763916	20763917	252,56,84
chr16	21157866	21158963	chr16	21158366	21158463	+	MIRc	chr16	21158366	21158463	SINE	MIR	chr16	21158376	21158378	+	TMEM159	ENSG00000011638.10	ENST00000573487.5	protein_coding	chr16:21158377-21179987	TRUE	FALSE	chr16	21157971	21158088	AR:LNCaP-abl	1	.	21158042	21158043	252,56,84
chr16	21157866	21158963	chr16	21158366	21158463	+	MIRc	chr16	21158366	21158463	SINE	MIR	chr16	21158376	21158378	+	TMEM159	ENSG00000011638.10	ENST00000573487.5	protein_coding	chr16:21158377-21179987	TRUE	FALSE	chr16	21158164	21158516	AR:LNCaP,myofibroblast	2	.	21158253	21158254	252,56,84
chr16	21157866	21158963	chr16	21158366	21158463	+	MIRc	chr16	21158366	21158463	SINE	MIR	chr16	21158376	21158378	+	TMEM159	ENSG00000011638.10	ENST00000573487.5	protein_coding	chr16:21158377-21179987	TRUE	FALSE	chr16	21158486	21158795	AR:prostate,MDA-MB-453,LNCaP-95,breast,THP-1,MCF-7,LNCaP,LNCaP-clone-FGC,prostate-cancer	23	.	21158630	21158631	252,56,84
chr16	54069371	54070620	chr16	54069871	54070120	+	MIR	chr16	54069871	54070120	SINE	MIR	chr16	54069895	54069897	+	FTO	ENSG00000140718.20	ENST00000636091.1	protein_coding	chr16:54069896-54114439	TRUE	FALSE	chr16	54069167	54069385	AR:breast	1	.	54069309	54069310	252,56,84
chr16	57376427	57377525	chr16	57376927	57377025	-	MIR1_Amn	chr16	57376927	57377025	SINE	MIR	chr16	57376971	57376973	+	CX3CL1	ENSG00000006210.6	ENST00000565912.1	protein_coding	chr16:57376972-57385042	TRUE	FALSE	chr16	57376963	57377194	AR:prostate	1	.	57377116	57377117	252,56,84
chr16	66378431	66379796	chr16	66378931	66379296	+	LTR22A	chr16	66378931	66379296	LTR	ERVK	chr16	66379224	66379226	+	CDH5	ENSG00000179776.17	ENST00000563425.2	protein_coding	chr16:66379225-66392985	FALSE	TRUE	chr16	66378942	66379180	AR:MCF-7,MDA-MB-453	2	.	66379043	66379044	252,56,84
chr16	66378431	66379796	chr16	66378931	66379296	+	LTR22A	chr16	66378931	66379296	LTR	ERVK	chr16	66379224	66379226	+	CDH5	ENSG00000179776.17	ENST00000563425.2	protein_coding	chr16:66379225-66392985	FALSE	TRUE	chr16	66379316	66379458	AR:MDA-MB-453	1	.	66379408	66379409	252,56,84
chr16	66394720	66396085	chr16	66395220	66395585	-	L1M6	chr16	66395220	66395585	LINE	L1	chr16	66395454	66395456	+	CDH5	ENSG00000179776.17	ENST00000539168.1	protein_coding	chr16:66395455-66403335	FALSE	TRUE	chr16	66395845	66395991	AR:LNCaP	1	.	66395897	66395898	252,56,84
chr16	88802547	88803842	chr16	88803047	88803342	-	AluYe5	chr16	88803047	88803342	SINE	Alu	chr16	88803212	88803214	+	CDT1	ENSG00000167513.8	ENST00000301019.8	protein_coding	chr16:88803213-88809258	TRUE	FALSE	chr16	88803448	88803800	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-C4-2B,LNCaP-95,A-375,breast,LNCaP,prostate-cancer	22	.	88803613	88803614	252,56,84
chr17	1769951	1771259	chr17	1770451	1770759	-	AluSx1	chr17	1770451	1770759	SINE	Alu	chr17	1770525	1770527	+	SERPINF1	ENSG00000132386.10	ENST00000570820.1	protein_coding	chr17:1770526-1772032	TRUE	FALSE	chr17	1769998	1770327	AR:prostate,MDA-MB-453,primary-prostate-cancer,myofibroblast,MCF-7,LNCaP,breast-cancer	11	.	1770149	1770150	252,56,84
chr17	1769951	1771259	chr17	1770451	1770759	-	AluSx1	chr17	1770451	1770759	SINE	Alu	chr17	1770525	1770527	+	SERPINF1	ENSG00000132386.10	ENST00000570820.1	protein_coding	chr17:1770526-1772032	TRUE	FALSE	chr17	1771053	1771251	AR:prostate	1	.	1771128	1771129	252,56,84
chr17	39069834	39071077	chr17	39070334	39070577	+	MIR	chr17	39070334	39070577	SINE	MIR	chr17	39070470	39070472	-	PLXDC1	ENSG00000161381.13	ENST00000578277.1	protein_coding	chr17:39067922-39070471	TRUE	FALSE	chr17	39069837	39069972	AR:MDA-MB-453	1	.	39069937	39069938	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521718	41521720	-	KRT15	ENSG00000171346.15	ENST00000393976.6	protein_coding	chr17:41513746-41521719	TRUE	FALSE	chr17	41520932	41521151	AR:VCaP	7	.	41521035	41521036	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521718	41521720	-	KRT15	ENSG00000171346.15	ENST00000393976.6	protein_coding	chr17:41513746-41521719	TRUE	FALSE	chr17	41521202	41521521	AR:MCF-7,prostate	2	.	41521407	41521408	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521718	41521720	-	KRT15	ENSG00000171346.15	ENST00000393976.6	protein_coding	chr17:41513746-41521719	TRUE	FALSE	chr17	41521870	41522213	AR:MDA-MB-453,breast,MCF-7,VCaP,DU145,LNCaP,LAPC-4,PC-3,breast-cancer,LTAD	21	.	41522015	41522016	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521773	41521775	-	KRT15	ENSG00000171346.15	ENST00000474031.5	protein_coding	chr17:41513746-41521774	TRUE	FALSE	chr17	41520932	41521151	AR:VCaP	7	.	41521035	41521036	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521773	41521775	-	KRT15	ENSG00000171346.15	ENST00000474031.5	protein_coding	chr17:41513746-41521774	TRUE	FALSE	chr17	41521202	41521521	AR:MCF-7,prostate	2	.	41521407	41521408	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521773	41521775	-	KRT15	ENSG00000171346.15	ENST00000474031.5	protein_coding	chr17:41513746-41521774	TRUE	FALSE	chr17	41521870	41522213	AR:MDA-MB-453,breast,MCF-7,VCaP,DU145,LNCaP,LAPC-4,PC-3,breast-cancer,LTAD	21	.	41522015	41522016	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521782	41521784	-	KRT15	ENSG00000171346.15	ENST00000463447.5	protein_coding	chr17:41515885-41521783	TRUE	FALSE	chr17	41520932	41521151	AR:VCaP	7	.	41521035	41521036	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521782	41521784	-	KRT15	ENSG00000171346.15	ENST00000463447.5	protein_coding	chr17:41515885-41521783	TRUE	FALSE	chr17	41521202	41521521	AR:MCF-7,prostate	2	.	41521407	41521408	252,56,84
chr17	41521136	41522306	chr17	41521636	41521806	+	MIRb	chr17	41521636	41521806	SINE	MIR	chr17	41521782	41521784	-	KRT15	ENSG00000171346.15	ENST00000463447.5	protein_coding	chr17:41515885-41521783	TRUE	FALSE	chr17	41521870	41522213	AR:MDA-MB-453,breast,MCF-7,VCaP,DU145,LNCaP,LAPC-4,PC-3,breast-cancer,LTAD	21	.	41522015	41522016	252,56,84
chr17	50678141	50679437	chr17	50678641	50678937	+	AluSx1	chr17	50678641	50678937	SINE	Alu	chr17	50678898	50678900	+	ABCC3	ENSG00000108846.15	ENST00000503337.1	protein_coding	chr17:50678899-50691699	TRUE	FALSE	chr17	50679028	50679328	AR:MCF-7	1	.	50679140	50679141	252,56,84
chr17	56986533	56987653	chr17	56987033	56987153	+	MIRc	chr17	56987033	56987153	SINE	MIR	chr17	56987089	56987091	+	SCPEP1	ENSG00000121064.12	ENST00000570480.5	protein_coding	chr17:56987090-56997102	TRUE	FALSE	chr17	56986908	56987114	AR:PC-3	1	.	56986981	56986982	252,56,84
chr17	64000141	64001465	chr17	64000641	64000965	-	AluY	chr17	64000641	64000965	SINE	Alu	chr17	64000856	64000858	+	PRR29	ENSG00000224383.7	ENST00000579222.1	protein_coding	chr17:64000857-64002493	FALSE	TRUE	chr17	64001120	64001263	AR:LNCaP-abl	1	.	64001180	64001181	252,56,84
chr17	64378197	64379422	chr17	64378697	64378922	+	MIRb	chr17	64378697	64378922	SINE	MIR	chr17	64378873	64378875	-	PECAM1	ENSG00000261371.5	ENST00000569530.1	protein_coding	chr17:64377574-64378874	FALSE	TRUE	chr17	64378752	64378924	AR:PC-3	1	.	64378904	64378905	252,56,84
chr17	64378197	64379422	chr17	64378697	64378922	+	MIRb	chr17	64378697	64378922	SINE	MIR	chr17	64378873	64378875	-	PECAM1	ENSG00000261371.5	ENST00000569530.1	protein_coding	chr17:64377574-64378874	FALSE	TRUE	chr17	64378935	64379150	AR:MCF-7,breast	2	.	64379028	64379029	252,56,84
chr17	77209343	77210642	chr17	77209843	77210142	-	AluSx1	chr17	77209843	77210142	SINE	Alu	chr17	77209860	77209862	+	SEC14L1	ENSG00000129657.14	ENST00000587491.5	protein_coding	chr17:77209861-77214331	FALSE	TRUE	chr17	77209490	77209744	AR:prostate	3	.	77209610	77209611	252,56,84
chr17	77209343	77210642	chr17	77209843	77210142	-	AluSx1	chr17	77209843	77210142	SINE	Alu	chr17	77209860	77209862	+	SEC14L1	ENSG00000129657.14	ENST00000587491.5	protein_coding	chr17:77209861-77214331	FALSE	TRUE	chr17	77210405	77210573	AR:MDA-MB-453	1	.	77210510	77210511	252,56,84
chr17	78122527	78123779	chr17	78123027	78123279	+	L2b	chr17	78123027	78123279	LINE	L2	chr17	78123122	78123124	-	TMC6	ENSG00000141524.15	ENST00000592076.5	protein_coding	chr17:78112919-78123123	FALSE	TRUE	chr17	78122527	78122667	AR:MDA-MB-453	1	.	78122626	78122627	252,56,84
chr17	82079185	82080507	chr17	82079685	82080007	-	AluSp	chr17	82079685	82080007	SINE	Alu	chr17	82079928	82079930	-	FASN	ENSG00000169710.8	ENST00000584610.2	protein_coding	chr17:82078997-82079929	FALSE	TRUE	chr17	82079269	82079630	AR:LNCaP-C4-2B,prostate,MDA-MB-453	4	.	82079473	82079474	252,56,84
chr18	23647343	23648550	chr18	23647843	23648050	-	LTR33	chr18	23647843	23648050	LTR	ERVL	chr18	23647996	23647998	-	ANKRD29	ENSG00000154065.16	ENST00000591280.5	protein_coding	chr18:23600010-23647997	FALSE	TRUE	chr18	23647786	23647974	AR:PC-3,VCaP,LNCaP	4	.	23647884	23647885	252,56,84
chr18	23992213	23993306	chr18	23992713	23992806	+	MamRTE1	chr18	23992713	23992806	LINE	RTE-BovB	chr18	23992772	23992774	+	TTC39C	ENSG00000168234.12	ENST00000304621.10	protein_coding	chr18:23992773-24133027	TRUE	FALSE	chr18	23992354	23992686	AR:prostate,VCaP-LTAD,MDA-MB-453,LNCaP-clone-FGC,breast,22Rv1,LAPC-4,VCaP,LNCaP,MCF-7,PC-3,prostate-cancer,LTAD	107	.	23992503	23992504	252,56,84
chr18	23992213	23993306	chr18	23992713	23992806	+	MamRTE1	chr18	23992713	23992806	LINE	RTE-BovB	chr18	23992772	23992774	+	TTC39C	ENSG00000168234.12	ENST00000304621.10	protein_coding	chr18:23992773-24133027	TRUE	FALSE	chr18	23992884	23993277	AR:VCaP	1	.	23993132	23993133	252,56,84
chr18	45614780	45616173	chr18	45615280	45615673	+	THE1D	chr18	45615280	45615673	LTR	ERVL-MaLR	chr18	45615480	45615482	+	SLC14A2	ENSG00000132874.14	ENST00000323329.3	protein_coding	chr18:45615481-45644408	FALSE	TRUE	chr18	45615957	45616160	AR:LNCaP	1	.	45616044	45616045	252,56,84
chr18	59665493	59666861	chr18	59665993	59666361	-	THE1B	chr18	59665993	59666361	LTR	ERVL-MaLR	chr18	59666161	59666163	-	CCBE1	ENSG00000183287.13	ENST00000589419.1	protein_coding	chr18:59448046-59666162	TRUE	FALSE	chr18	59665730	59665898	AR:LNCaP	2	.	59665825	59665826	252,56,84
chr19	287957	289095	chr19	288457	288595	-	FLAM_C	chr19	288457	288595	SINE	Alu	chr19	288536	288538	-	PLPP2	ENSG00000141934.9	ENST00000621795.1	protein_coding	chr19:281046-288537	TRUE	FALSE	chr19	288909	289098	AR:MDA-MB-453	1	.	288983	288984	252,56,84
chr19	287957	289095	chr19	288457	288595	-	FLAM_C	chr19	288457	288595	SINE	Alu	chr19	288537	288539	-	PLPP2	ENSG00000141934.9	ENST00000589672.2	protein_coding	chr19:287584-288538	TRUE	FALSE	chr19	288909	289098	AR:MDA-MB-453	1	.	288983	288984	252,56,84
chr19	2291411	2292710	chr19	2291911	2292210	+	AluJr	chr19	2291911	2292210	SINE	Alu	chr19	2292023	2292025	-	LINGO3	ENSG00000220008.3	ENST00000585527.1	protein_coding	chr19:2289784-2292024	TRUE	FALSE	chr19	2290532	2292017	AR:prostate	1	.	2291122	2291123	252,56,84
chr19	2291411	2292710	chr19	2291911	2292210	+	AluJr	chr19	2291911	2292210	SINE	Alu	chr19	2292023	2292025	-	LINGO3	ENSG00000220008.3	ENST00000585527.1	protein_coding	chr19:2289784-2292024	TRUE	FALSE	chr19	2291336	2291569	AR:PC-3,VCaP,MDA-MB-453,prostate-cancer	4	.	2291472	2291473	252,56,84
chr19	2291411	2292710	chr19	2291911	2292210	+	AluJr	chr19	2291911	2292210	SINE	Alu	chr19	2292023	2292025	-	LINGO3	ENSG00000220008.3	ENST00000585527.1	protein_coding	chr19:2289784-2292024	TRUE	FALSE	chr19	2291736	2291961	AR:prostate,MDA-MB-453	2	.	2291801	2291802	252,56,84
chr19	3743151	3744392	chr19	3743651	3743892	-	MLT1J	chr19	3743651	3743892	LTR	ERVL-MaLR	chr19	3743662	3743664	+	TJP3	ENSG00000105289.14	ENST00000591493.1	protein_coding	chr19:3743663-3747894	TRUE	FALSE	chr19	3743911	3744103	AR:LNCaP	1	.	3743934	3743935	252,56,84
chr19	3743151	3744392	chr19	3743651	3743892	-	MLT1J	chr19	3743651	3743892	LTR	ERVL-MaLR	chr19	3743662	3743664	+	TJP3	ENSG00000105289.14	ENST00000591493.1	protein_coding	chr19:3743663-3747894	TRUE	FALSE	chr19	3744058	3744266	AR:prostate-cancer	1	.	3744197	3744198	252,56,84
chr19	5823192	5824466	chr19	5823692	5823966	+	L2b	chr19	5823692	5823966	LINE	L2	chr19	5823801	5823803	+	NRTN	ENSG00000171119.2	ENST00000303212.2	protein_coding	chr19:5823802-5828324	TRUE	FALSE	chr19	5823644	5823802	AR:MCF-7,LNCaP,MDA-MB-453	5	.	5823723	5823724	252,56,84
chr19	5823192	5824466	chr19	5823692	5823966	+	L2b	chr19	5823692	5823966	LINE	L2	chr19	5823801	5823803	+	NRTN	ENSG00000171119.2	ENST00000303212.2	protein_coding	chr19:5823802-5828324	TRUE	FALSE	chr19	5823992	5824273	AR:prostate,MDA-MB-453	2	.	5824129	5824130	252,56,84
chr19	10624691	10625784	chr19	10625191	10625284	+	MIR3	chr19	10625191	10625284	SINE	MIR	chr19	10625257	10625259	+	SLC44A2	ENSG00000129353.14	ENST00000335757.9	protein_coding	chr19:10625258-10644559	TRUE	FALSE	chr19	10625265	10625638	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-clone-FGC,LNCaP-95,primary-prostate-cancer,myofibroblast,breast,22Rv1,MCF-7,VCaP,LNCaP,DU145,LAPC-4,breast-cancer,prostate-cancer,LHSAR,LTAD	81	.	10625446	10625447	252,56,84
chr19	17754090	17755261	chr19	17754590	17754761	+	MIRb	chr19	17754590	17754761	SINE	MIR	chr19	17754675	17754677	+	FCHO1	ENSG00000130475.14	ENST00000596951.5	protein_coding	chr19:17754676-17788562	TRUE	FALSE	chr19	17754104	17754316	AR:prostate,MDA-MB-453	2	.	17754181	17754182	252,56,84
chr19	18786264	18787570	chr19	18786764	18787070	-	AluSg	chr19	18786764	18787070	SINE	Alu	chr19	18787034	18787036	-	COMP	ENSG00000105664.10	ENST00000612179.1	protein_coding	chr19:18786118-18787035	FALSE	TRUE	chr19	18787196	18787550	AR:prostate	1	.	18787363	18787364	252,56,84
chr19	18786264	18787570	chr19	18786764	18787070	-	AluSg	chr19	18786764	18787070	SINE	Alu	chr19	18787034	18787036	-	COMP	ENSG00000105664.10	ENST00000612179.1	protein_coding	chr19:18786118-18787035	FALSE	TRUE	chr19	18787470	18787654	AR:MDA-MB-453	2	.	18787545	18787546	252,56,84
chr19	33394598	33395727	chr19	33395098	33395227	+	L2b	chr19	33395098	33395227	LINE	L2	chr19	33395147	33395149	-	PEPD	ENSG00000124299.13	ENST00000591968.1	protein_coding	chr19:33386955-33395148	FALSE	TRUE	chr19	33394563	33394948	AR:prostate	1	.	33394904	33394905	252,56,84
chr19	33394598	33395727	chr19	33395098	33395227	+	L2b	chr19	33395098	33395227	LINE	L2	chr19	33395147	33395149	-	PEPD	ENSG00000124299.13	ENST00000591968.1	protein_coding	chr19:33386955-33395148	FALSE	TRUE	chr19	33395495	33395755	AR:prostate	1	.	33395592	33395593	252,56,84
chr19	33394598	33395727	chr19	33395098	33395227	+	L2b	chr19	33395098	33395227	LINE	L2	chr19	33395147	33395149	-	PEPD	ENSG00000124299.13	ENST00000591968.1	protein_coding	chr19:33386955-33395148	FALSE	TRUE	chr19	33395628	33395984	AR:prostate	1	.	33395807	33395808	252,56,84
chr19	35115341	35116449	chr19	35115841	35115949	+	L3	chr19	35115841	35115949	LINE	CR1	chr19	35115878	35115880	+	FXYD3	ENSG00000089356.18	ENST00000604404.5	protein_coding	chr19:35115879-35124324	TRUE	FALSE	chr19	35115137	35115430	AR:MDA-MB-453,A-375	2	.	35115250	35115251	252,56,84
chr19	35115341	35116449	chr19	35115841	35115949	+	L3	chr19	35115841	35115949	LINE	CR1	chr19	35115878	35115880	+	FXYD3	ENSG00000089356.18	ENST00000604404.5	protein_coding	chr19:35115879-35124324	TRUE	FALSE	chr19	35115552	35115894	AR:MCF-7,breast	2	.	35115731	35115732	252,56,84
chr19	35115341	35116449	chr19	35115841	35115949	+	L3	chr19	35115841	35115949	LINE	CR1	chr19	35115878	35115880	+	FXYD3	ENSG00000089356.18	ENST00000604404.5	protein_coding	chr19:35115879-35124324	TRUE	FALSE	chr19	35116154	35116343	AR:prostate,LNCaP-abl,MDA-MB-453,breast,MCF-7,VCaP,LNCaP,prostate-cancer	12	.	35116254	35116255	252,56,84
chr19	35115341	35116449	chr19	35115841	35115949	+	L3	chr19	35115841	35115949	LINE	CR1	chr19	35115940	35115942	+	FXYD3	ENSG00000089356.18	ENST00000603181.5	protein_coding	chr19:35115941-35123657	TRUE	FALSE	chr19	35115137	35115430	AR:MDA-MB-453,A-375	2	.	35115250	35115251	252,56,84
chr19	35115341	35116449	chr19	35115841	35115949	+	L3	chr19	35115841	35115949	LINE	CR1	chr19	35115940	35115942	+	FXYD3	ENSG00000089356.18	ENST00000603181.5	protein_coding	chr19:35115941-35123657	TRUE	FALSE	chr19	35115552	35115894	AR:MCF-7,breast	2	.	35115731	35115732	252,56,84
chr19	35115341	35116449	chr19	35115841	35115949	+	L3	chr19	35115841	35115949	LINE	CR1	chr19	35115940	35115942	+	FXYD3	ENSG00000089356.18	ENST00000603181.5	protein_coding	chr19:35115941-35123657	TRUE	FALSE	chr19	35116154	35116343	AR:prostate,LNCaP-abl,MDA-MB-453,breast,MCF-7,VCaP,LNCaP,prostate-cancer	12	.	35116254	35116255	252,56,84
chr19	43776316	43777619	chr19	43776816	43777119	+	AluSx3	chr19	43776816	43777119	SINE	Alu	chr19	43776825	43776827	-	KCNN4	ENSG00000104783.11	ENST00000599107.1	protein_coding	chr19:43774219-43776826	TRUE	FALSE	chr19	43776285	43776420	AR:MDA-MB-453	1	.	43776322	43776323	252,56,84
chr19	45449988	45451299	chr19	45450488	45450799	+	AluSp	chr19	45450488	45450799	SINE	Alu	chr19	45450724	45450726	-	ERCC1	ENSG00000012061.15	ENST00000592083.5	protein_coding	chr19:45413963-45450725	TRUE	FALSE	chr19	45450111	45450378	AR:A-375,breast	2	.	45450242	45450243	252,56,84
chr19	45449988	45451299	chr19	45450488	45450799	+	AluSp	chr19	45450488	45450799	SINE	Alu	chr19	45450724	45450726	-	ERCC1	ENSG00000012061.15	ENST00000592083.5	protein_coding	chr19:45413963-45450725	TRUE	FALSE	chr19	45450326	45450524	AR:A-375	1	.	45450454	45450455	252,56,84
chr19	45449988	45451299	chr19	45450488	45450799	+	AluSp	chr19	45450488	45450799	SINE	Alu	chr19	45450724	45450726	-	ERCC1	ENSG00000012061.15	ENST00000592083.5	protein_coding	chr19:45413963-45450725	TRUE	FALSE	chr19	45450875	45451208	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-95,primary-prostate-cancer,A-375,breast,22Rv1,LAPC-4,VCaP,LNCaP,MCF-7,breast-cancer,prostate-cancer	51	.	45451013	45451014	252,56,84
chr19	45449988	45451299	chr19	45450488	45450799	+	AluSp	chr19	45450488	45450799	SINE	Alu	chr19	45450724	45450726	-	ERCC1	ENSG00000012061.15	ENST00000592083.5	protein_coding	chr19:45413963-45450725	TRUE	FALSE	chr19	45451192	45451362	AR:MCF-7	1	.	45451226	45451227	252,56,84
chr19	46413080	46414231	chr19	46413580	46413731	-	LTR104_Mam	chr19	46413580	46413731	LTR	Gypsy	chr19	46413583	46413585	-	CCDC8	ENSG00000169515.5	ENST00000307522.3	protein_coding	chr19:46410372-46413584	TRUE	FALSE	chr19	46413270	46413736	AR:MCF-7,prostate,LNCaP	8	.	46413432	46413433	252,56,84
chr19	46413080	46414231	chr19	46413580	46413731	-	LTR104_Mam	chr19	46413580	46413731	LTR	Gypsy	chr19	46413583	46413585	-	CCDC8	ENSG00000169515.5	ENST00000307522.3	protein_coding	chr19:46410372-46413584	TRUE	FALSE	chr19	46413742	46413938	AR:prostate	1	.	46413915	46413916	252,56,84
chr19	48753020	48754402	chr19	48753520	48753902	-	LTR13A	chr19	48753520	48753902	LTR	ERVK	chr19	48753659	48753661	-	FUT1	ENSG00000174951.10	ENST00000599826.5	protein_coding	chr19:48752612-48753660	FALSE	TRUE	chr19	48752731	48753108	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-95,myofibroblast,breast,MCF-7,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer,breast-cancer	65	.	48752930	48752931	252,56,84
chr19	49687268	49688412	chr19	49687768	49687912	-	L2	chr19	49687768	49687912	LINE	L2	chr19	49687852	49687854	+	PRMT1	ENSG00000126457.21	ENST00000527866.1	protein_coding	chr19:49687853-49689029	FALSE	TRUE	chr19	49687898	49688240	AR:MDA-MB-453,breast	2	.	49688122	49688123	252,56,84
chr19	55078938	55080121	chr19	55079438	55079621	-	L2b	chr19	55079438	55079621	LINE	L2	chr19	55079584	55079586	+	EPS8L1	ENSG00000131037.14	ENST00000592318.1	protein_coding	chr19:55079585-55080183	TRUE	FALSE	chr19	55079588	55079747	AR:22Rv1	1	.	55079683	55079684	252,56,84
chr19	55078938	55080121	chr19	55079438	55079621	-	L2b	chr19	55079438	55079621	LINE	L2	chr19	55079584	55079586	+	EPS8L1	ENSG00000131037.14	ENST00000592318.1	protein_coding	chr19:55079585-55080183	TRUE	FALSE	chr19	55080053	55080306	AR:prostate	1	.	55080137	55080138	252,56,84
chr19	55281558	55282867	chr19	55282058	55282367	+	AluSg	chr19	55282058	55282367	SINE	Alu	chr19	55282071	55282073	+	BRSK1	ENSG00000160469.16	ENST00000590333.5	protein_coding	chr19:55282072-55312533	TRUE	FALSE	chr19	55281417	55281604	AR:LNCaP	1	.	55281475	55281476	252,56,84
chr19	55281558	55282867	chr19	55282058	55282367	+	AluSg	chr19	55282058	55282367	SINE	Alu	chr19	55282071	55282073	+	BRSK1	ENSG00000160469.16	ENST00000590333.5	protein_coding	chr19:55282072-55312533	TRUE	FALSE	chr19	55282464	55282656	AR:breast	1	.	55282616	55282617	252,56,84
chr19	55281558	55282867	chr19	55282058	55282367	+	AluSg	chr19	55282058	55282367	SINE	Alu	chr19	55282203	55282205	+	BRSK1	ENSG00000160469.16	ENST00000592539.6	protein_coding	chr19:55282204-55294248	TRUE	FALSE	chr19	55281417	55281604	AR:LNCaP	1	.	55281475	55281476	252,56,84
chr19	55281558	55282867	chr19	55282058	55282367	+	AluSg	chr19	55282058	55282367	SINE	Alu	chr19	55282203	55282205	+	BRSK1	ENSG00000160469.16	ENST00000592539.6	protein_coding	chr19:55282204-55294248	TRUE	FALSE	chr19	55282464	55282656	AR:breast	1	.	55282616	55282617	252,56,84
chr2	6866003	6867492	chr2	6866503	6866992	+	Tigger8	chr2	6866503	6866992	DNA	TcMar-Tigger	chr2	6866634	6866636	-	CMPK2	ENSG00000134326.11	ENST00000478738.5	protein_coding	chr2:6848318-6866635	FALSE	TRUE	chr2	6865657	6866005	AR:prostate,MDA-MB-453,LNCaP-95,breast,THP-1,MCF-7,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer	24	.	6865807	6865808	252,56,84
chr2	6866003	6867492	chr2	6866503	6866992	+	Tigger8	chr2	6866503	6866992	DNA	TcMar-Tigger	chr2	6866634	6866636	-	CMPK2	ENSG00000134326.11	ENST00000478738.5	protein_coding	chr2:6848318-6866635	FALSE	TRUE	chr2	6865999	6866063	AR:prostate-cancer	1	.	6866052	6866053	252,56,84
chr2	6866003	6867492	chr2	6866503	6866992	+	Tigger8	chr2	6866503	6866992	DNA	TcMar-Tigger	chr2	6866634	6866636	-	CMPK2	ENSG00000134326.11	ENST00000478738.5	protein_coding	chr2:6848318-6866635	FALSE	TRUE	chr2	6866328	6866576	AR:prostate,breast,VCaP,LNCaP,prostate-cancer	10	.	6866463	6866464	252,56,84
chr2	25649721	25650863	chr2	25650221	25650363	+	L2a	chr2	25650221	25650363	LINE	L2	chr2	25650221	25650223	-	DTNB	ENSG00000138101.18	ENST00000496972.6	protein_coding	chr2:25377198-25650222	TRUE	FALSE	chr2	25649874	25650170	AR:THP-1	1	.	25650017	25650018	252,56,84
chr2	25649721	25650863	chr2	25650221	25650363	+	L2a	chr2	25650221	25650363	LINE	L2	chr2	25650221	25650223	-	DTNB	ENSG00000138101.18	ENST00000496972.6	protein_coding	chr2:25377198-25650222	TRUE	FALSE	chr2	25650366	25650612	AR:THP-1	1	.	25650507	25650508	252,56,84
chr2	27771599	27772742	chr2	27772099	27772242	-	MIR3	chr2	27772099	27772242	SINE	MIR	chr2	27772189	27772191	+	MRPL33	ENSG00000243147.7	ENST00000476552.1	protein_coding	chr2:27772190-27779697	FALSE	TRUE	chr2	27771636	27771975	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-95,primary-prostate-cancer,myofibroblast,A-375,breast,22Rv1,MCF-7,VCaP,LNCaP,LNCaP-clone-FGC,prostate-cancer,breast-cancer	50	.	27771810	27771811	252,56,84
chr2	29174808	29176105	chr2	29175308	29175605	+	L3	chr2	29175308	29175605	LINE	CR1	chr2	29175362	29175364	+	CLIP4	ENSG00000115295.19	ENST00000481628.1	protein_coding	chr2:29175363-29181758	TRUE	FALSE	chr2	29175045	29175268	AR:MDA-MB-453,LNCaP-95,VCaP,LNCaP,PC-3,prostate-cancer,LTAD	25	.	29175161	29175162	252,56,84
chr2	29174808	29176105	chr2	29175308	29175605	+	L3	chr2	29175308	29175605	LINE	CR1	chr2	29175362	29175364	+	CLIP4	ENSG00000115295.19	ENST00000481628.1	protein_coding	chr2:29175363-29181758	TRUE	FALSE	chr2	29175293	29175426	AR:LNCaP	1	.	29175387	29175388	252,56,84
chr2	44360106	44361307	chr2	44360606	44360807	+	MIRb	chr2	44360606	44360807	SINE	MIR	chr2	44360673	44360675	-	PREPL	ENSG00000138078.15	ENST00000425263.5	protein_coding	chr2:44316281-44360674	TRUE	FALSE	chr2	44360826	44361183	AR:prostate	1	.	44361078	44361079	252,56,84
chr2	44360106	44361307	chr2	44360606	44360807	+	MIRb	chr2	44360606	44360807	SINE	MIR	chr2	44360673	44360675	-	PREPL	ENSG00000138078.15	ENST00000425263.5	protein_coding	chr2:44316281-44360674	TRUE	FALSE	chr2	44361215	44361374	AR:VCaP	1	.	44361308	44361309	252,56,84
chr2	47368785	47369984	chr2	47369285	47369484	+	LTR41B	chr2	47369285	47369484	LTR	ERVL	chr2	47369474	47369476	+	EPCAM	ENSG00000119888.10	ENST00000474691.1	protein_coding	chr2:47369475-47375254	TRUE	FALSE	chr2	47369041	47369442	AR:prostate,LNCaP-clone-FGC,MDA-MB-453,LNCaP-95,primary-prostate-cancer,breast,MCF-7,VCaP,LNCaP,LAPC-4,breast-cancer,prostate-cancer	53	.	47369206	47369207	252,56,84
chr2	47368785	47369984	chr2	47369285	47369484	+	LTR41B	chr2	47369285	47369484	LTR	ERVL	chr2	47369474	47369476	+	EPCAM	ENSG00000119888.10	ENST00000474691.1	protein_coding	chr2:47369475-47375254	TRUE	FALSE	chr2	47369693	47370031	AR:prostate,myofibroblast,breast,MCF-7,VCaP,LNCaP,LAPC-4,breast-cancer,prostate-cancer	15	.	47369885	47369886	252,56,84
chr2	95277230	95278345	chr2	95277730	95277845	-	MIRb	chr2	95277730	95277845	SINE	MIR	chr2	95277815	95277817	+	PROM2	ENSG00000155066.15	ENST00000478295.1	protein_coding	chr2:95277816-95279939	TRUE	FALSE	chr2	95277393	95277654	AR:prostate-cancer,LNCaP,breast	3	.	95277532	95277533	252,56,84
chr2	113219928	113221043	chr2	113220428	113220543	-	MIR	chr2	113220428	113220543	SINE	MIR	chr2	113220476	113220478	-	PAX8	ENSG00000125618.16	ENST00000480684.1	protein_coding	chr2:113218469-113220477	FALSE	TRUE	chr2	113219810	113220065	AR:VCaP,LNCaP,prostate-cancer,LTAD	16	.	113219921	113219922	252,56,84
chr2	113219928	113221043	chr2	113220428	113220543	-	MIR	chr2	113220428	113220543	SINE	MIR	chr2	113220476	113220478	-	PAX8	ENSG00000125618.16	ENST00000480684.1	protein_coding	chr2:113218469-113220477	FALSE	TRUE	chr2	113220540	113220872	AR:breast-cancer,breast	2	.	113220719	113220720	252,56,84
chr2	181497504	181498904	chr2	181498004	181498404	+	L1MC5a	chr2	181498004	181498404	LINE	L1	chr2	181498280	181498282	+	ITGA4	ENSG00000115232.13	ENST00000490435.5	protein_coding	chr2:181498281-181511771	TRUE	FALSE	chr2	181497333	181497729	AR:VCaP	1	.	181497569	181497570	252,56,84
chr2	201630555	201631893	chr2	201631055	201631393	+	MLT1A	chr2	201631055	201631393	LTR	ERVL-MaLR	chr2	201631374	201631376	-	TMEM237	ENSG00000155755.18	ENST00000466839.5	protein_coding	chr2:201627387-201631375	TRUE	FALSE	chr2	201631806	201632190	AR:THP-1	1	.	201631928	201631929	252,56,84
chr2	232868459	232869607	chr2	232868959	232869107	-	ERVL-B4-int	chr2	232868959	232869107	LTR	ERVL	chr2	232869013	232869015	+	C2orf82	ENSG00000182600.9	ENST00000409533.5	protein_coding	chr2:232869014-232876406	TRUE	FALSE	chr2	232869201	232869363	AR:LNCaP-abl	1	.	232869257	232869258	252,56,84
chr2	232890358	232891764	chr2	232890858	232891264	+	L2b	chr2	232890858	232891264	LINE	L2	chr2	232890979	232890981	-	NGEF	ENSG00000066248.14	ENST00000424488.5	protein_coding	chr2:232882229-232890980	TRUE	FALSE	chr2	232890365	232890568	AR:breast	1	.	232890448	232890449	252,56,84
chr2	232890358	232891764	chr2	232890858	232891264	+	L2b	chr2	232890858	232891264	LINE	L2	chr2	232890979	232890981	-	NGEF	ENSG00000066248.14	ENST00000424488.5	protein_coding	chr2:232882229-232890980	TRUE	FALSE	chr2	232890973	232891221	AR:LNCaP-abl,prostate,MDA-MB-453,LNCaP-95,breast,LNCaP,prostate-cancer	20	.	232891084	232891085	252,56,84
chr2	232890358	232891764	chr2	232890858	232891264	+	L2b	chr2	232890858	232891264	LINE	L2	chr2	232890979	232890981	-	NGEF	ENSG00000066248.14	ENST00000424488.5	protein_coding	chr2:232882229-232890980	TRUE	FALSE	chr2	232891567	232891776	AR:prostate,breast	2	.	232891700	232891701	252,56,84
chr2	232890358	232891764	chr2	232890858	232891264	+	L2b	chr2	232890858	232891264	LINE	L2	chr2	232890979	232890981	-	NGEF	ENSG00000066248.14	ENST00000461944.1	protein_coding	chr2:232884924-232890980	TRUE	FALSE	chr2	232890365	232890568	AR:breast	1	.	232890448	232890449	252,56,84
chr2	232890358	232891764	chr2	232890858	232891264	+	L2b	chr2	232890858	232891264	LINE	L2	chr2	232890979	232890981	-	NGEF	ENSG00000066248.14	ENST00000461944.1	protein_coding	chr2:232884924-232890980	TRUE	FALSE	chr2	232890973	232891221	AR:LNCaP-abl,prostate,MDA-MB-453,LNCaP-95,breast,LNCaP,prostate-cancer	20	.	232891084	232891085	252,56,84
chr2	232890358	232891764	chr2	232890858	232891264	+	L2b	chr2	232890858	232891264	LINE	L2	chr2	232890979	232890981	-	NGEF	ENSG00000066248.14	ENST00000461944.1	protein_coding	chr2:232884924-232890980	TRUE	FALSE	chr2	232891567	232891776	AR:prostate,breast	2	.	232891700	232891701	252,56,84
chr2	238432795	238433919	chr2	238433295	238433419	-	FLAM_A	chr2	238433295	238433419	SINE	Alu	chr2	238433313	238433315	+	ASB1	ENSG00000065802.11	ENST00000491653.1	protein_coding	chr2:238433314-238444474	TRUE	FALSE	chr2	238433588	238433789	AR:prostate,MDA-MB-453	2	.	238433665	238433666	252,56,84
chr20	45478797	45480046	chr20	45479297	45479546	+	MIR	chr20	45479297	45479546	SINE	MIR	chr20	45479438	45479440	+	WFDC2	ENSG00000101443.17	ENST00000342873.7	protein_coding	chr20:45479439-45481532	TRUE	FALSE	chr20	45479767	45480050	AR:MCF-7,LNCaP	2	.	45479843	45479844	252,56,84
chr20	48642206	48643288	chr20	48642706	48642788	-	MIR	chr20	48642706	48642788	SINE	MIR	chr20	48642737	48642739	-	PREX1	ENSG00000124126.13	ENST00000496915.1	protein_coding	chr20:48642113-48642738	FALSE	TRUE	chr20	48642735	48642938	AR:LHSAR	1	.	48642857	48642858	252,56,84
chr20	57391655	57392753	chr20	57392155	57392253	-	MamRep1879	chr20	57392155	57392253	DNA	hAT-Tip100?	chr20	57392229	57392231	+	RBM38	ENSG00000132819.16	ENST00000371219.2	protein_coding	chr20:57392230-57407860	TRUE	FALSE	chr20	57391462	57391824	AR:prostate,LNCaP,LNCaP-95,MDA-MB-453	6	.	57391657	57391658	252,56,84
chr20	57391655	57392753	chr20	57392155	57392253	-	MamRep1879	chr20	57392155	57392253	DNA	hAT-Tip100?	chr20	57392229	57392231	+	RBM38	ENSG00000132819.16	ENST00000371219.2	protein_coding	chr20:57392230-57407860	TRUE	FALSE	chr20	57392487	57392690	AR:MDA-MB-453	1	.	57392556	57392557	252,56,84
chr20	57391655	57392753	chr20	57392155	57392253	-	MamRep1879	chr20	57392155	57392253	DNA	hAT-Tip100?	chr20	57392229	57392231	+	RBM38	ENSG00000132819.16	ENST00000371219.2	protein_coding	chr20:57392230-57407860	TRUE	FALSE	chr20	57392595	57392876	AR:prostate	1	.	57392787	57392788	252,56,84
chr21	42389765	42390946	chr21	42390265	42390446	+	MLT1C2	chr21	42390265	42390446	LTR	ERVL-MaLR	chr21	42390417	42390419	-	TMPRSS3	ENSG00000160183.13	ENST00000482761.1	protein_coding	chr21:42371890-42390418	TRUE	FALSE	chr21	42389624	42389869	AR:prostate,breast,MCF-7,VCaP,prostate-cancer	16	.	42389749	42389750	252,56,84
chr21	42389765	42390946	chr21	42390265	42390446	+	MLT1C2	chr21	42390265	42390446	LTR	ERVL-MaLR	chr21	42390417	42390419	-	TMPRSS3	ENSG00000160183.13	ENST00000482761.1	protein_coding	chr21:42371890-42390418	TRUE	FALSE	chr21	42390770	42391082	AR:MCF-7	1	.	42390885	42390886	252,56,84
chr21	45847562	45848852	chr21	45848062	45848352	-	MER51B	chr21	45848062	45848352	LTR	ERV1	chr21	45848162	45848164	+	PCBP3	ENSG00000183570.16	ENST00000400310.5	protein_coding	chr21:45848163-45942454	FALSE	TRUE	chr21	45847715	45847948	AR:prostate,VCaP,LNCaP	4	.	45847854	45847855	252,56,84
chr22	36239377	36240482	chr22	36239877	36239982	+	MIRb	chr22	36239877	36239982	SINE	MIR	chr22	36239953	36239955	-	APOL2	ENSG00000128335.13	ENST00000249066.10	protein_coding	chr22:36226210-36239954	TRUE	FALSE	chr22	36239544	36239821	AR:prostate,MDA-MB-453,LNCaP-95,VCaP,LNCaP,LNCaP-clone-FGC	19	.	36239666	36239667	252,56,84
chr22	36239377	36240482	chr22	36239877	36239982	+	MIRb	chr22	36239877	36239982	SINE	MIR	chr22	36239953	36239955	-	APOL2	ENSG00000128335.13	ENST00000249066.10	protein_coding	chr22:36226210-36239954	TRUE	FALSE	chr22	36239949	36240075	AR:LNCaP	1	.	36240005	36240006	252,56,84
chr22	38039493	38040809	chr22	38039993	38040309	+	AluJb	chr22	38039993	38040309	SINE	Alu	chr22	38040303	38040305	+	POLR2F	ENSG00000100142.14	ENST00000608713.1	protein_coding	chr22:38040304-38041915	TRUE	FALSE	chr22	38039612	38039902	AR:prostate	1	.	38039758	38039759	252,56,84
chr22	41780945	41782047	chr22	41781445	41781547	+	MIR3	chr22	41781445	41781547	SINE	MIR	chr22	41781445	41781447	+	MEI1	ENSG00000167077.12	ENST00000484966.1	protein_coding	chr22:41781446-41795773	TRUE	FALSE	chr22	41781203	41781414	AR:THP-1	1	.	41781278	41781279	252,56,84
chr22	41780945	41782047	chr22	41781445	41781547	+	MIR3	chr22	41781445	41781547	SINE	MIR	chr22	41781445	41781447	+	MEI1	ENSG00000167077.12	ENST00000484966.1	protein_coding	chr22:41781446-41795773	TRUE	FALSE	chr22	41781642	41781840	AR:LNCaP	1	.	41781817	41781818	252,56,84
chr22	41939554	41940886	chr22	41940054	41940386	+	L2a	chr22	41940054	41940386	LINE	L2	chr22	41940218	41940220	-	CENPM	ENSG00000100162.14	ENST00000472374.6	protein_coding	chr22:41938737-41940219	TRUE	FALSE	chr22	41940096	41940328	AR:prostate,MDA-MB-453,breast,LNCaP,breast-cancer,prostate-cancer	20	.	41940221	41940222	252,56,84
chr3	32450343	32451552	chr3	32450843	32451052	-	L2d	chr3	32450843	32451052	LINE	L2	chr3	32451002	32451004	+	CMTM7	ENSG00000153551.13	ENST00000464689.1	protein_coding	chr3:32451003-32454835	TRUE	FALSE	chr3	32450523	32450721	AR:prostate	1	.	32450550	32450551	252,56,84
chr3	48416304	48417512	chr3	48416804	48417012	+	Tigger12c	chr3	48416804	48417012	DNA	TcMar-Tigger	chr3	48416832	48416834	-	PLXNB1	ENSG00000164050.12	ENST00000464294.1	protein_coding	chr3:48414991-48416833	TRUE	FALSE	chr3	48417121	48417384	AR:PC-3	1	.	48417242	48417243	252,56,84
chr3	64521907	64525261	chr3	64522407	64524761	+	Cheshire	chr3	64522407	64524761	DNA	hAT-Charlie	chr3	64522510	64522512	-	ADAMTS9	ENSG00000163638.13	ENST00000477180.1	protein_coding	chr3:64515657-64522511	FALSE	TRUE	chr3	64522013	64522357	AR:MCF-7	1	.	64522222	64522223	252,56,84
chr3	123623568	123624844	chr3	123624068	123624344	+	AluJr	chr3	123624068	123624344	SINE	Alu	chr3	123624077	123624079	-	MYLK	ENSG00000065534.18	ENST00000515434.1	protein_coding	chr3:123616352-123624078	TRUE	FALSE	chr3	123624403	123624607	AR:MCF-7,LNCaP	3	.	123624501	123624502	252,56,84
chr3	134596974	134598369	chr3	134597474	134597869	+	ERV3-16A3_LTR	chr3	134597474	134597869	LTR	ERVL	chr3	134597800	134597802	+	EPHB1	ENSG00000154928.16	ENST00000467013.1	protein_coding	chr3:134597801-134601119	TRUE	FALSE	chr3	134597689	134597875	AR:breast	1	.	134597789	134597790	252,56,84
chr3	148729658	148730794	chr3	148730158	148730294	-	MIRc	chr3	148730158	148730294	SINE	MIR	chr3	148730179	148730181	+	AGTR1	ENSG00000144891.17	ENST00000418473.6	protein_coding	chr3:148730180-148743001	FALSE	TRUE	chr3	148729545	148729718	AR:prostate	1	.	148729578	148729579	252,56,84
chr3	193417848	193422698	chr3	193418348	193422198	+	L1MB4	chr3	193418348	193422198	LINE	L1	chr3	193418982	193418984	-	ATP13A4	ENSG00000127249.14	ENST00000400270.6	protein_coding	chr3:193402077-193418983	TRUE	FALSE	chr3	193418777	193419159	AR:LNCaP	1	.	193419025	193419026	252,56,84
chr3	193417848	193422698	chr3	193418348	193422198	+	L1MB4	chr3	193418348	193422198	LINE	L1	chr3	193418982	193418984	-	ATP13A4	ENSG00000127249.14	ENST00000400270.6	protein_coding	chr3:193402077-193418983	TRUE	FALSE	chr3	193419751	193420080	AR:LNCaP	1	.	193419916	193419917	252,56,84
chr3	193417848	193422698	chr3	193418348	193422198	+	L1MB4	chr3	193418348	193422198	LINE	L1	chr3	193418982	193418984	-	ATP13A4	ENSG00000127249.14	ENST00000400270.6	protein_coding	chr3:193402077-193418983	TRUE	FALSE	chr3	193420169	193420390	AR:LNCaP	1	.	193420284	193420285	252,56,84
chr3	197298751	197299863	chr3	197299251	197299363	-	MIR3	chr3	197299251	197299363	SINE	MIR	chr3	197299299	197299301	-	DLG1	ENSG00000075711.20	ENST00000419354.5	protein_coding	chr3:197043631-197299300	TRUE	FALSE	chr3	197298498	197298835	AR:prostate,LNCaP-abl,MDA-MB-453,LNCaP-95,primary-prostate-cancer,myofibroblast,breast,MCF-7,VCaP,LNCaP,DU145,LNCaP-clone-FGC,prostate-cancer,breast-cancer	70	.	197298666	197298667	252,56,84
chr3	197298751	197299863	chr3	197299251	197299363	-	MIR3	chr3	197299251	197299363	SINE	MIR	chr3	197299299	197299301	-	DLG1	ENSG00000075711.20	ENST00000419354.5	protein_coding	chr3:197043631-197299300	TRUE	FALSE	chr3	197299581	197299765	AR:LNCaP	1	.	197299698	197299699	252,56,84
chr3	197912689	197913807	chr3	197913189	197913307	-	FLAM_A	chr3	197913189	197913307	SINE	Alu	chr3	197913283	197913285	-	IQCG	ENSG00000114473.13	ENST00000478903.5	protein_coding	chr3:197889078-197913284	TRUE	FALSE	chr3	197912782	197913042	AR:MCF-7	1	.	197912894	197912895	252,56,84
chr4	10039521	10040711	chr4	10040021	10040211	+	L2b	chr4	10040021	10040211	LINE	L2	chr4	10040209	10040211	-	SLC2A9	ENSG00000109667.11	ENST00000505104.5	protein_coding	chr4:9880206-10040210	TRUE	FALSE	chr4	10039939	10040249	AR:prostate	1	.	10040085	10040086	252,56,84
chr4	39032157	39033450	chr4	39032657	39032950	+	AluJr	chr4	39032657	39032950	SINE	Alu	chr4	39032719	39032721	-	TMEM156	ENSG00000121895.7	ENST00000495029.1	protein_coding	chr4:39028375-39032720	TRUE	FALSE	chr4	39032910	39033111	AR:THP-1,A-375	2	.	39032953	39032954	252,56,84
chr4	40192372	40193496	chr4	40192872	40192996	+	MIR	chr4	40192872	40192996	SINE	MIR	chr4	40192967	40192969	+	RHOH	ENSG00000168421.12	ENST00000503754.5	protein_coding	chr4:40192968-40243257	TRUE	FALSE	chr4	40192874	40193221	AR:breast-cancer	1	.	40193017	40193018	252,56,84
chr4	40192372	40193496	chr4	40192872	40192996	+	MIR	chr4	40192872	40192996	SINE	MIR	chr4	40192967	40192969	+	RHOH	ENSG00000168421.12	ENST00000503754.5	protein_coding	chr4:40192968-40243257	TRUE	FALSE	chr4	40193246	40193459	AR:breast-cancer,MDA-MB-453,breast,LNCaP	7	.	40193361	40193362	252,56,84
chr4	41359038	41360137	chr4	41359538	41359637	-	LTR33	chr4	41359538	41359637	LTR	ERVL	chr4	41359606	41359608	+	LIMCH1	ENSG00000064042.17	ENST00000513024.5	protein_coding	chr4:41359607-41699003	TRUE	FALSE	chr4	41358702	41359048	AR:prostate,LNCaP-abl,LNCaP-clone-FGC,LNCaP-95,22Rv1,MCF-7,VCaP,LNCaP,breast-cancer,prostate-cancer,LTAD	68	.	41358905	41358906	252,56,84
chr4	152411972	152413419	chr4	152412472	152412919	+	L1ME4c	chr4	152412472	152412919	LINE	L1	chr4	152412605	152412607	-	FBXW7	ENSG00000109670.13	ENST00000605042.1	protein_coding	chr4:152411329-152412606	TRUE	FALSE	chr4	152411824	152412165	AR:LNCaP-95,VCaP,LNCaP,LNCaP-clone-FGC,LHSAR	31	.	152411998	152411999	252,56,84
chr4	158172501	158173588	chr4	158173001	158173088	+	CR1-L3A_Croc	chr4	158173001	158173088	LINE	CR1	chr4	158173045	158173047	-	FAM198B	ENSG00000164125.15	ENST00000592057.1	protein_coding	chr4:158168354-158173046	TRUE	FALSE	chr4	158172386	158172855	AR:VCaP	1	.	158172606	158172607	252,56,84
chr4	158172501	158173588	chr4	158173001	158173088	+	CR1-L3A_Croc	chr4	158173001	158173088	LINE	CR1	chr4	158173045	158173047	-	FAM198B	ENSG00000164125.15	ENST00000592057.1	protein_coding	chr4:158168354-158173046	TRUE	FALSE	chr4	158172679	158172824	AR:LNCaP	1	.	158172742	158172743	252,56,84
chr4	158172501	158173588	chr4	158173001	158173088	+	CR1-L3A_Croc	chr4	158173001	158173088	LINE	CR1	chr4	158173045	158173047	-	FAM198B	ENSG00000164125.15	ENST00000592057.1	protein_coding	chr4:158168354-158173046	TRUE	FALSE	chr4	158172784	158173116	AR:LNCaP-abl,VCaP	11	.	158172952	158172953	252,56,84
chr5	168360	169673	chr5	168860	169173	-	AluSc	chr5	168860	169173	SINE	Alu	chr5	169052	169054	+	PLEKHG4B	ENSG00000153404.14	ENST00000504041.1	protein_coding	chr5:169053-182589	TRUE	FALSE	chr5	168146	168404	AR:prostate,MDA-MB-453	2	.	168279	168280	252,56,84
chr5	168360	169673	chr5	168860	169173	-	AluSc	chr5	168860	169173	SINE	Alu	chr5	169052	169054	+	PLEKHG4B	ENSG00000153404.14	ENST00000504041.1	protein_coding	chr5:169053-182589	TRUE	FALSE	chr5	168452	168628	AR:prostate,fibroblast,endometrial-stromal-cell	3	.	168539	168540	252,56,84
chr5	168360	169673	chr5	168860	169173	-	AluSc	chr5	168860	169173	SINE	Alu	chr5	169052	169054	+	PLEKHG4B	ENSG00000153404.14	ENST00000504041.1	protein_coding	chr5:169053-182589	TRUE	FALSE	chr5	169155	169397	AR:prostate	1	.	169231	169232	252,56,84
chr5	168360	169673	chr5	168860	169173	-	AluSc	chr5	168860	169173	SINE	Alu	chr5	169052	169054	+	PLEKHG4B	ENSG00000153404.14	ENST00000504041.1	protein_coding	chr5:169053-182589	TRUE	FALSE	chr5	169512	169705	AR:prostate,MDA-MB-453,LNCaP-95	4	.	169605	169606	252,56,84
chr5	168360	169673	chr5	168860	169173	-	AluSc	chr5	168860	169173	SINE	Alu	chr5	169052	169054	+	PLEKHG4B	ENSG00000153404.14	ENST00000504041.1	protein_coding	chr5:169053-182589	TRUE	FALSE	chr5	169663	169987	AR:prostate	1	.	169845	169846	252,56,84
chr5	77409567	77411021	chr5	77410067	77410521	-	MER66A	chr5	77410067	77410521	LTR	ERV1	chr5	77410423	77410425	+	PDE8B	ENSG00000113231.13	ENST00000505283.1	protein_coding	chr5:77410424-77428195	FALSE	TRUE	chr5	77410057	77410286	AR:MCF-7	1	.	77410188	77410189	252,56,84
chr5	78548467	78549952	chr5	78548967	78549452	-	MLT1H	chr5	78548967	78549452	LTR	ERVL-MaLR	chr5	78549150	78549152	-	LHFPL2	ENSG00000145685.13	ENST00000515007.6	protein_coding	chr5:78485215-78549151	TRUE	FALSE	chr5	78549055	78549222	AR:MCF-7	1	.	78549137	78549138	252,56,84
chr5	78548467	78549952	chr5	78548967	78549452	-	MLT1H	chr5	78548967	78549452	LTR	ERVL-MaLR	chr5	78549150	78549152	-	LHFPL2	ENSG00000145685.13	ENST00000515007.6	protein_coding	chr5:78485215-78549151	TRUE	FALSE	chr5	78549184	78549439	AR:THP-1	1	.	78549280	78549281	252,56,84
chr5	140334603	140335913	chr5	140335103	140335413	+	AluY	chr5	140335103	140335413	SINE	Alu	chr5	140335129	140335131	-	HBEGF	ENSG00000113070.7	ENST00000482211.2	protein_coding	chr5:140333524-140335130	FALSE	TRUE	chr5	140334845	140335117	AR:prostate,prostate-cancer	9	.	140335003	140335004	252,56,84
chr5	140633125	140634221	chr5	140633625	140633721	+	L3	chr5	140633625	140633721	LINE	CR1	chr5	140633650	140633652	-	CD14	ENSG00000170458.13	ENST00000498971.6	protein_coding	chr5:140632344-140633651	TRUE	FALSE	chr5	140633026	140633218	AR:breast	1	.	140633054	140633055	252,56,84
chr5	140633125	140634221	chr5	140633625	140633721	+	L3	chr5	140633625	140633721	LINE	CR1	chr5	140633650	140633652	-	CD14	ENSG00000170458.13	ENST00000498971.6	protein_coding	chr5:140632344-140633651	TRUE	FALSE	chr5	140633192	140633543	AR:THP-1,prostate,breast,MCF-7	5	.	140633337	140633338	252,56,84
chr5	140633125	140634221	chr5	140633625	140633721	+	L3	chr5	140633625	140633721	LINE	CR1	chr5	140633650	140633652	-	CD14	ENSG00000170458.13	ENST00000498971.6	protein_coding	chr5:140632344-140633651	TRUE	FALSE	chr5	140634171	140634323	AR:MCF-7	1	.	140634230	140634231	252,56,84
chr5	148824652	148825867	chr5	148825152	148825367	-	AluSx4	chr5	148825152	148825367	SINE	Alu	chr5	148825244	148825246	+	ADRB2	ENSG00000169252.5	ENST00000305988.5	protein_coding	chr5:148825245-148828687	FALSE	TRUE	chr5	148824850	148825104	AR:VCaP,LNCaP	5	.	148824981	148824982	252,56,84
chr5	149403677	149404812	chr5	149404177	149404312	+	X7C_LINE	chr5	149404177	149404312	LINE	CR1	chr5	149404201	149404203	-	IL17B	ENSG00000127743.5	ENST00000505432.1	protein_coding	chr5:149374357-149404202	FALSE	TRUE	chr5	149403950	149404890	AR:fibroblast	1	.	149404120	149404121	252,56,84
chr5	149403677	149404812	chr5	149404177	149404312	+	X7C_LINE	chr5	149404177	149404312	LINE	CR1	chr5	149404201	149404203	-	IL17B	ENSG00000127743.5	ENST00000505432.1	protein_coding	chr5:149374357-149404202	FALSE	TRUE	chr5	149404208	149404632	AR:prostate	1	.	149404437	149404438	252,56,84
chr5	160280782	160281934	chr5	160281282	160281434	-	L1MC4	chr5	160281282	160281434	LINE	L1	chr5	160281388	160281390	-	CCNJL	ENSG00000135083.14	ENST00000541762.5	protein_coding	chr5:160251664-160281389	TRUE	FALSE	chr5	160280597	160280805	AR:MDA-MB-453	1	.	160280667	160280668	252,56,84
chr6	35316977	35318127	chr6	35317477	35317627	+	L3	chr6	35317477	35317627	LINE	CR1	chr6	35317607	35317609	+	DEF6	ENSG00000023892.10	ENST00000468102.1	protein_coding	chr6:35317608-35318230	TRUE	FALSE	chr6	35317817	35318146	AR:prostate,MDA-MB-453,MCF-7	5	.	35317936	35317937	252,56,84
chr6	43455934	43457212	chr6	43456434	43456712	+	AluSx	chr6	43456434	43456712	SINE	Alu	chr6	43456631	43456633	-	DLK2	ENSG00000171462.14	ENST00000357338.3	protein_coding	chr6:43450354-43456632	TRUE	FALSE	chr6	43455771	43456013	AR:prostate,VCaP,MDA-MB-453	5	.	43455879	43455880	252,56,84
chr6	71290286	71292150	chr6	71290786	71291650	-	L2d2	chr6	71290786	71291650	LINE	L2	chr6	71291361	71291363	+	OGFRL1	ENSG00000119900.7	ENST00000467503.1	protein_coding	chr6:71291362-71293612	TRUE	FALSE	chr6	71291374	71291580	AR:LNCaP-abl,MDA-MB-453,VCaP,LNCaP,breast-cancer	8	.	71291458	71291459	252,56,84
chr6	149895278	149896607	chr6	149895778	149896107	-	MLT1A0	chr6	149895778	149896107	LTR	ERVL-MaLR	chr6	149896058	149896060	-	RAET1E	ENSG00000164520.11	ENST00000532335.5	protein_coding	chr6:149883375-149896059	FALSE	TRUE	chr6	149895457	149895698	AR:THP-1,prostate,breast	4	.	149895530	149895531	252,56,84
chr6	149895278	149896607	chr6	149895778	149896107	-	MLT1A0	chr6	149895778	149896107	LTR	ERVL-MaLR	chr6	149896058	149896060	-	RAET1E	ENSG00000164520.11	ENST00000532335.5	protein_coding	chr6:149883375-149896059	FALSE	TRUE	chr6	149895644	149896046	AR:prostate	2	.	149895806	149895807	252,56,84
chr6	149895278	149896607	chr6	149895778	149896107	-	MLT1A0	chr6	149895778	149896107	LTR	ERVL-MaLR	chr6	149896058	149896060	-	RAET1E	ENSG00000164520.11	ENST00000532335.5	protein_coding	chr6:149883375-149896059	FALSE	TRUE	chr6	149896035	149896237	AR:prostate,breast,VCaP,LNCaP,prostate-cancer	11	.	149896135	149896136	252,56,84
chr6	149895278	149896607	chr6	149895778	149896107	-	MLT1A0	chr6	149895778	149896107	LTR	ERVL-MaLR	chr6	149896058	149896060	-	RAET1E	ENSG00000164520.11	ENST00000532335.5	protein_coding	chr6:149883375-149896059	FALSE	TRUE	chr6	149896398	149896722	AR:prostate,VCaP-LTAD,MDA-MB-453,primary-prostate-cancer,PC-3,breast,VCaP,LNCaP,DUCAP,breast-cancer,prostate-cancer,LTAD	82	.	149896564	149896565	252,56,84
chr7	26359754	26361040	chr7	26360254	26360540	-	AluJb	chr7	26360254	26360540	SINE	Alu	chr7	26360453	26360455	+	SNX10	ENSG00000086300.15	ENST00000619420.4	protein_coding	chr7:26360454-26374327	FALSE	TRUE	chr7	26360643	26360940	AR:THP-1	1	.	26360778	26360779	252,56,84
chr7	90214712	90216018	chr7	90215212	90215518	+	MamRTE1	chr7	90215212	90215518	LINE	RTE-BovB	chr7	90215273	90215275	+	STEAP2	ENSG00000157214.13	ENST00000482369.1	protein_coding	chr7:90215274-90227033	TRUE	FALSE	chr7	90214395	90215098	AR:VCaP	1	.	90214640	90214641	252,56,84
chr7	150566630	150567790	chr7	150567130	150567290	-	MER3	chr7	150567130	150567290	DNA	hAT-Charlie	chr7	150567276	150567278	+	GIMAP4	ENSG00000133574.9	ENST00000255945.3	protein_coding	chr7:150567277-150573955	FALSE	TRUE	chr7	150566941	150567067	AR:LNCaP	1	.	150567002	150567003	252,56,84
chr7	151078722	151079892	chr7	151079222	151079392	+	MER117	chr7	151079222	151079392	DNA	hAT-Charlie	chr7	151079327	151079329	-	FASTK	ENSG00000164896.19	ENST00000469237.5	protein_coding	chr7:151076638-151079328	FALSE	TRUE	chr7	151079567	151079854	AR:prostate,MDA-MB-453	4	.	151079701	151079702	252,56,84
chr7	151440280	151441338	chr7	151440780	151440838	+	L2b	chr7	151440780	151440838	LINE	L2	chr7	151440812	151440814	-	CRYGN	ENSG00000127377.8	ENST00000476631.5	protein_coding	chr7:151428835-151440813	TRUE	FALSE	chr7	151440554	151440802	AR:prostate,MDA-MB-453,MCF-7	4	.	151440661	151440662	252,56,84
chr8	39901860	39904139	chr8	39902360	39903639	+	LTR49-int	chr8	39902360	39903639	LTR	ERV1	chr8	39902374	39902376	+	IDO1	ENSG00000131203.12	ENST00000522495.5	protein_coding	chr8:39902375-39928426	TRUE	FALSE	chr8	39903042	39903198	AR:LNCaP,breast	2	.	39903153	39903154	252,56,84
chr8	81282510	81283711	chr8	81283010	81283211	+	MIR	chr8	81283010	81283211	SINE	MIR	chr8	81283027	81283029	+	FABP5	ENSG00000164687.10	ENST00000486269.1	protein_coding	chr8:81283028-81283940	FALSE	TRUE	chr8	81282795	81282955	AR:LNCaP	1	.	81282881	81282882	252,56,84
chr8	85186470	85189000	chr8	85186970	85188500	-	L1M1	chr8	85186970	85188500	LINE	L1	chr8	85187684	85187686	+	E2F5	ENSG00000133740.10	ENST00000517476.5	protein_coding	chr8:85187685-85214037	TRUE	FALSE	chr8	85187585	85187846	AR:THP-1	1	.	85187688	85187689	252,56,84
chr8	85186470	85189000	chr8	85186970	85188500	-	L1M1	chr8	85186970	85188500	LINE	L1	chr8	85187684	85187686	+	E2F5	ENSG00000133740.10	ENST00000517476.5	protein_coding	chr8:85187685-85214037	TRUE	FALSE	chr8	85188462	85188730	AR:MCF-7,VCaP	2	.	85188599	85188600	252,56,84
chr8	104418211	104419480	chr8	104418711	104418980	+	L2b	chr8	104418711	104418980	LINE	L2	chr8	104418853	104418855	-	DPYS	ENSG00000147647.12	ENST00000520483.5	protein_coding	chr8:104380513-104418854	TRUE	FALSE	chr8	104418087	104418307	AR:LNCaP-abl,prostate,MDA-MB-453,MCF-7,VCaP,LNCaP,prostate-cancer	15	.	104418188	104418189	252,56,84
chr8	129752065	129758210	chr8	129752565	129757710	+	L1MA2	chr8	129752565	129757710	LINE	L1	chr8	129752885	129752887	-	GSDMC	ENSG00000147697.8	ENST00000522273.5	protein_coding	chr8:129748196-129752886	TRUE	FALSE	chr8	129752866	129753264	AR:LNCaP,breast	3	.	129753073	129753074	252,56,84
chr8	129752065	129758210	chr8	129752565	129757710	+	L1MA2	chr8	129752565	129757710	LINE	L1	chr8	129752885	129752887	-	GSDMC	ENSG00000147697.8	ENST00000522273.5	protein_coding	chr8:129748196-129752886	TRUE	FALSE	chr8	129753786	129754002	AR:prostate	1	.	129753873	129753874	252,56,84
chr8	129752065	129758210	chr8	129752565	129757710	+	L1MA2	chr8	129752565	129757710	LINE	L1	chr8	129752885	129752887	-	GSDMC	ENSG00000147697.8	ENST00000522273.5	protein_coding	chr8:129748196-129752886	TRUE	FALSE	chr8	129757409	129757547	AR:VCaP	1	.	129757478	129757479	252,56,84
chr8	133244085	133245238	chr8	133244585	133244738	-	MIRb	chr8	133244585	133244738	SINE	MIR	chr8	133244659	133244661	-	NDRG1	ENSG00000104419.14	ENST00000523642.1	protein_coding	chr8:133241874-133244660	FALSE	TRUE	chr8	133244318	133244571	AR:LNCaP	1	.	133244371	133244372	252,56,84
chr8	133244085	133245238	chr8	133244585	133244738	-	MIRb	chr8	133244585	133244738	SINE	MIR	chr8	133244659	133244661	-	NDRG1	ENSG00000104419.14	ENST00000523642.1	protein_coding	chr8:133241874-133244660	FALSE	TRUE	chr8	133244448	133244740	AR:PC-3	1	.	133244524	133244525	252,56,84
chr8	133244085	133245238	chr8	133244585	133244738	-	MIRb	chr8	133244585	133244738	SINE	MIR	chr8	133244659	133244661	-	NDRG1	ENSG00000104419.14	ENST00000523642.1	protein_coding	chr8:133241874-133244660	FALSE	TRUE	chr8	133244929	133245163	AR:LNCaP-abl	1	.	133245058	133245059	252,56,84
chr8	141190532	141191973	chr8	141191032	141191473	-	L1ME2	chr8	141191032	141191473	LINE	L1	chr8	141191273	141191275	+	DENND3	ENSG00000105339.10	ENST00000521835.1	protein_coding	chr8:141191274-141195799	FALSE	TRUE	chr8	141190710	141190879	AR:LNCaP	1	.	141190743	141190744	252,56,84
chr8	141190532	141191973	chr8	141191032	141191473	-	L1ME2	chr8	141191032	141191473	LINE	L1	chr8	141191273	141191275	+	DENND3	ENSG00000105339.10	ENST00000521835.1	protein_coding	chr8:141191274-141195799	FALSE	TRUE	chr8	141191601	141191780	AR:prostate,MDA-MB-453	3	.	141191666	141191667	252,56,84
chr9	32989462	32990647	chr9	32989962	32990147	+	MIRb	chr9	32989962	32990147	SINE	MIR	chr9	32990087	32990089	-	APTX	ENSG00000137074.18	ENST00000472896.5	protein_coding	chr9:32972618-32990088	TRUE	FALSE	chr9	32989771	32989884	AR:LNCaP	1	.	32989821	32989822	252,56,84
chr9	33257054	33258299	chr9	33257554	33257799	+	L1ME4a	chr9	33257554	33257799	LINE	L1	chr9	33257670	33257672	-	BAG1	ENSG00000107262.18	ENST00000468274.1	protein_coding	chr9:33255864-33257671	TRUE	FALSE	chr9	33256866	33257064	AR:prostate	1	.	33257003	33257004	252,56,84
chr9	92599482	92600770	chr9	92599982	92600270	-	MER58B	chr9	92599982	92600270	DNA	hAT-Charlie	chr9	92600256	92600258	+	CENPP	ENSG00000188312.13	ENST00000375579.7	protein_coding	chr9:92600257-92615164	FALSE	TRUE	chr9	92600592	92600732	AR:MCF-7	1	.	92600675	92600676	252,56,84
chr9	93313959	93316283	chr9	93314459	93315783	-	HSMAR2	chr9	93314459	93315783	DNA	TcMar-Mariner	chr9	93315487	93315489	+	WNK2	ENSG00000165238.16	ENST00000471076.1	protein_coding	chr9:93315488-93320566	TRUE	FALSE	chr9	93316276	93316417	AR:DU145	1	.	93316349	93316350	252,56,84
chr9	113299199	113300303	chr9	113299699	113299803	+	Charlie15a	chr9	113299699	113299803	DNA	hAT-Charlie	chr9	113299764	113299766	-	RNF183	ENSG00000165188.13	ENST00000478815.1	protein_coding	chr9:113297454-113299765	TRUE	FALSE	chr9	113300065	113300258	AR:LNCaP	2	.	113300129	113300130	252,56,84
chr9	127761803	127763354	chr9	127762303	127762854	+	L2a	chr9	127762303	127762854	LINE	L2	chr9	127762417	127762419	-	SH2D3C	ENSG00000095370.19	ENST00000429553.5	protein_coding	chr9:127738318-127762418	FALSE	TRUE	chr9	127761983	127762268	AR:MCF-7,breast	2	.	127762131	127762132	252,56,84
chr9	127761803	127763354	chr9	127762303	127762854	+	L2a	chr9	127762303	127762854	LINE	L2	chr9	127762417	127762419	-	SH2D3C	ENSG00000095370.19	ENST00000429553.5	protein_coding	chr9:127738318-127762418	FALSE	TRUE	chr9	127762383	127762609	AR:THP-1	1	.	127762484	127762485	252,56,84
chr9	136888784	136890084	chr9	136889284	136889584	-	AluSp	chr9	136889284	136889584	SINE	Alu	chr9	136889534	136889536	+	TRAF2	ENSG00000127191.17	ENST00000414589.1	protein_coding	chr9:136889535-136900517	TRUE	FALSE	chr9	136888538	136888792	AR:MCF-7,prostate,LNCaP,breast	4	.	136888661	136888662	252,56,84
chr9	137088681	137090063	chr9	137089181	137089563	-	L2b	chr9	137089181	137089563	LINE	L2	chr9	137089180	137089182	+	MAN1B1	ENSG00000177239.14	ENST00000474902.5	protein_coding	chr9:137089181-137109181	FALSE	TRUE	chr9	137089260	137089408	AR:LNCaP	1	.	137089323	137089324	252,56,84