chr1	59056028	59057134	chr1	59056528	59056634	-	L2b	chr1	59056528	59056634	LINE	L2	chr1	59056626	59056628	+	LINC01358	ENSG00000237352.3	ENST00000635072.1	lincRNA	chr1:59056627-59104098	FALSE	TRUE	chr1	59055915	59056730	ESR1:primary-endometrium-cancer	1	.	59056553	59056554	224,168,84
chr1	59056028	59057134	chr1	59056528	59056634	-	L2b	chr1	59056528	59056634	LINE	L2	chr1	59056626	59056628	+	LINC01358	ENSG00000237352.3	ENST00000635072.1	lincRNA	chr1:59056627-59104098	FALSE	TRUE	chr1	59056012	59056309	ESR1:MCF-7,U2OS,endometrioid-adenocarcinoma,primary-endometrium-cancer,breast,pleural-effusion,T-47D-B,MDA-MB-231,T-47D,MDA-MB-134-VI,Ishikawa	126	.	59056159	59056160	224,168,84
chr1	59056028	59057134	chr1	59056528	59056634	-	L2b	chr1	59056528	59056634	LINE	L2	chr1	59056626	59056628	+	LINC01358	ENSG00000237352.3	ENST00000635072.1	lincRNA	chr1:59056627-59104098	FALSE	TRUE	chr1	59056926	59057107	ESR1:primary-endometrium-cancer	1	.	59057014	59057015	224,168,84
chr1	204626256	204627444	chr1	204626756	204626944	+	MER112	chr1	204626756	204626944	DNA	hAT-Charlie	chr1	204626774	204626776	+	RP11-430C7.5	ENSG00000240219.1	ENST00000444037.1	lincRNA	chr1:204626775-204629712	TRUE	FALSE	chr1	204626338	204626581	ESR1:MCF-7	1	.	204626421	204626422	224,168,84
chr1	204626256	204627444	chr1	204626756	204626944	+	MER112	chr1	204626756	204626944	DNA	hAT-Charlie	chr1	204626774	204626776	+	RP11-430C7.5	ENSG00000240219.1	ENST00000444037.1	lincRNA	chr1:204626775-204629712	TRUE	FALSE	chr1	204627161	204627387	ESR1:Ishikawa	1	.	204627316	204627317	224,168,84
chr1	205437190	205438388	chr1	205437690	205437888	-	MIR3	chr1	205437690	205437888	SINE	MIR	chr1	205437878	205437880	-	BLACAT1	ENSG00000281406.1	ENST00000626538.1	lincRNA	chr1:205434886-205437879	TRUE	FALSE	chr1	205437147	205437486	ESR1:MCF-7	3	.	205437311	205437312	224,168,84
chr1	205437190	205438388	chr1	205437690	205437888	-	MIR3	chr1	205437690	205437888	SINE	MIR	chr1	205437878	205437880	-	BLACAT1	ENSG00000281406.1	ENST00000626538.1	lincRNA	chr1:205434886-205437879	TRUE	FALSE	chr1	205438199	205438473	ESR1:breast	1	.	205438322	205438323	224,168,84
chr1	238485318	238486645	chr1	238485818	238486145	-	MER61A	chr1	238485818	238486145	LTR	ERV1	chr1	238486022	238486024	-	LINC01139	ENSG00000215808.2	ENST00000400946.2	lincRNA	chr1:238480384-238486023	TRUE	FALSE	chr1	238485874	238486190	ESR1:Ishikawa	4	.	238486067	238486068	224,168,84
chr1	238485318	238486645	chr1	238485818	238486145	-	MER61A	chr1	238485818	238486145	LTR	ERV1	chr1	238486022	238486024	-	LINC01139	ENSG00000215808.2	ENST00000400946.2	lincRNA	chr1:238480384-238486023	TRUE	FALSE	chr1	238485491	238485788	ESR1:breast-cancer,T-47D,Ishikawa,breast	11	.	238485642	238485643	224,168,84
chr10	6736798	6738188	chr10	6737298	6737688	+	MLT1H	chr10	6737298	6737688	LTR	ERVL-MaLR	chr10	6737381	6737383	+	LINP1	ENSG00000223784.1	ENST00000417112.1	lincRNA	chr10:6737382-6739026	TRUE	FALSE	chr10	6737250	6737550	ESR1:MCF-7,Ishikawa,breast	25	.	6737365	6737366	224,168,84
chr10	6736798	6738188	chr10	6737298	6737688	+	MLT1H	chr10	6737298	6737688	LTR	ERVL-MaLR	chr10	6737381	6737383	+	LINP1	ENSG00000223784.1	ENST00000417112.1	lincRNA	chr10:6737382-6739026	TRUE	FALSE	chr10	6737942	6738119	ESR1:breast	1	.	6738082	6738083	224,168,84
chr11	12988907	12990230	chr11	12989407	12989730	-	THE1D	chr11	12989407	12989730	LTR	ERVL-MaLR	chr11	12989546	12989548	-	LINC00958	ENSG00000251381.7	ENST00000527945.2	lincRNA	chr11:12961842-12989547	TRUE	FALSE	chr11	12989380	12989561	ESR1:primary-endometrium-cancer	1	.	12989445	12989446	224,168,84
chr11	12988907	12990230	chr11	12989407	12989730	-	THE1D	chr11	12989407	12989730	LTR	ERVL-MaLR	chr11	12989546	12989548	-	LINC00958	ENSG00000251381.7	ENST00000527945.2	lincRNA	chr11:12961842-12989547	TRUE	FALSE	chr11	12989974	12990068	ESR1:MCF-7	1	.	12989985	12989986	224,168,84
chr11	12988907	12990230	chr11	12989407	12989730	-	THE1D	chr11	12989407	12989730	LTR	ERVL-MaLR	chr11	12989547	12989549	-	LINC00958	ENSG00000251381.7	ENST00000504230.2	lincRNA	chr11:12979535-12989548	TRUE	FALSE	chr11	12989380	12989561	ESR1:primary-endometrium-cancer	1	.	12989445	12989446	224,168,84
chr11	12988907	12990230	chr11	12989407	12989730	-	THE1D	chr11	12989407	12989730	LTR	ERVL-MaLR	chr11	12989547	12989549	-	LINC00958	ENSG00000251381.7	ENST00000504230.2	lincRNA	chr11:12979535-12989548	TRUE	FALSE	chr11	12989974	12990068	ESR1:MCF-7	1	.	12989985	12989986	224,168,84
chr11	43946472	43947875	chr11	43946972	43947375	-	MSTB	chr11	43946972	43947375	LTR	ERVL-MaLR	chr11	43947205	43947207	-	RP11-613D13.8	ENSG00000244953.1	ENST00000501541.1	lincRNA	chr11:43943787-43947206	FALSE	TRUE	chr11	43947061	43947363	ESR1:MCF-7	10	.	43947198	43947199	224,168,84
chr11	43946472	43947875	chr11	43946972	43947375	-	MSTB	chr11	43946972	43947375	LTR	ERVL-MaLR	chr11	43947205	43947207	-	RP11-613D13.8	ENSG00000244953.1	ENST00000501541.1	lincRNA	chr11:43943787-43947206	FALSE	TRUE	chr11	43947872	43948175	ESR1:Ishikawa	1	.	43947964	43947965	224,168,84
chr12	8786583	8789168	chr12	8787083	8788668	+	LTR12C	chr12	8787083	8788668	LTR	ERV1	chr12	8788256	8788258	+	RP11-20D14.6	ENSG00000249790.2	ENST00000422780.3	lincRNA	chr12:8788257-8794497	FALSE	TRUE	chr12	8786290	8786690	ESR1:U2OS	1	.	8786431	8786432	224,168,84
chr12	8786583	8789168	chr12	8787083	8788668	+	LTR12C	chr12	8787083	8788668	LTR	ERV1	chr12	8788273	8788275	+	RP11-20D14.6	ENSG00000249790.2	ENST00000514568.2	lincRNA	chr12:8788274-8795789	FALSE	TRUE	chr12	8786290	8786690	ESR1:U2OS	1	.	8786431	8786432	224,168,84
chr12	115300180	115301318	chr12	115300680	115300818	-	MER5A1	chr12	115300680	115300818	DNA	hAT-Charlie	chr12	115300707	115300709	-	RP11-116D17.3	ENSG00000271579.1	ENST00000603439.1	lincRNA	chr12:115299588-115300708	FALSE	TRUE	chr12	115300446	115300626	ESR1:MCF-7	2	.	115300534	115300535	224,168,84
chr13	110056168	110057819	chr13	110056668	110057319	+	LTR58	chr13	110056668	110057319	LTR	ERV1	chr13	110057285	110057287	-	RP11-403A3.3	ENSG00000275830.1	ENST00000617298.1	lincRNA	chr13:110036197-110057286	FALSE	TRUE	chr13	110056817	110057117	ESR1:VCaP,U2OS	5	.	110056962	110056963	224,168,84
chr13	110056168	110057819	chr13	110056668	110057319	+	LTR58	chr13	110056668	110057319	LTR	ERV1	chr13	110057285	110057287	-	RP11-403A3.3	ENSG00000275830.1	ENST00000617298.1	lincRNA	chr13:110036197-110057286	FALSE	TRUE	chr13	110057185	110057411	ESR1:T-47D,Ishikawa,breast	3	.	110057260	110057261	224,168,84
chr14	95515499	95516655	chr14	95515999	95516155	-	MIRc	chr14	95515999	95516155	SINE	MIR	chr14	95516135	95516137	+	RP11-1070N10.3	ENSG00000258572.1	ENST00000554161.1	lincRNA	chr14:95516136-95517911	FALSE	TRUE	chr14	95516047	95516466	ESR1:MCF-7,U2OS,NCI-H3396,breast-cancer,MCF-7-Luc,SUM44PE,VCaP,ZR751,primary-endometrium-cancer,breast,MCF-7L,pleural-effusion,T-47D-B,MDA-MB-231,T-47D,MDA-MB-134-VI,Ishikawa	282	.	95516230	95516231	224,168,84
chr15	89040411	89041843	chr15	89040911	89041343	+	MLT1H2	chr15	89040911	89041343	LTR	ERVL-MaLR	chr15	89041222	89041224	+	RP11-326A19.4	ENSG00000260123.1	ENST00000565938.1	lincRNA	chr15:89041223-89082819	FALSE	TRUE	chr15	89040825	89041221	ESR1:MCF-7,Ishikawa,breast	8	.	89040991	89040992	224,168,84
chr15	89040411	89041843	chr15	89040911	89041343	+	MLT1H2	chr15	89040911	89041343	LTR	ERVL-MaLR	chr15	89041222	89041224	+	RP11-326A19.4	ENSG00000260123.1	ENST00000565938.1	lincRNA	chr15:89041223-89082819	FALSE	TRUE	chr15	89041676	89042007	ESR1:MCF-7,U2OS,VCaP,breast,MDA-MB-231,MDA-MB-134-VI,Ishikawa	19	.	89041832	89041833	224,168,84
chr16	3076853	3079286	chr16	3077353	3078786	-	HERVK9-int	chr16	3077353	3078786	LTR	ERVK	chr16	3078689	3078691	-	RP11-473M20.9	ENSG00000262370.5	ENST00000577123.5	lincRNA	chr16:3076911-3078690	FALSE	TRUE	chr16	3076602	3076905	ESR1:U2OS,Ishikawa	3	.	3076773	3076774	224,168,84
chr16	66407943	66409066	chr16	66408443	66408566	-	LTR91	chr16	66408443	66408566	LTR	LTR	chr16	66408523	66408525	+	LINC00920	ENSG00000246898.1	ENST00000499966.1	lincRNA	chr16:66408524-66412135	TRUE	FALSE	chr16	66408444	66408556	ESR1:Ishikawa	2	.	66408487	66408488	224,168,84
chr16	66407943	66409066	chr16	66408443	66408566	-	LTR91	chr16	66408443	66408566	LTR	LTR	chr16	66408523	66408525	+	LINC00920	ENSG00000246898.1	ENST00000499966.1	lincRNA	chr16:66408524-66412135	TRUE	FALSE	chr16	66408666	66408930	ESR1:MCF-7,T-47D,breast	4	.	66408792	66408793	224,168,84
chr16	66407943	66409066	chr16	66408443	66408566	-	LTR91	chr16	66408443	66408566	LTR	LTR	chr16	66408523	66408525	+	LINC00920	ENSG00000246898.1	ENST00000499966.1	lincRNA	chr16:66408524-66412135	TRUE	FALSE	chr16	66409011	66409149	ESR1:MCF-7	1	.	66409039	66409040	224,168,84
chr17	28230515	28239344	chr17	28231015	28238844	-	HERVE-int	chr17	28231015	28238844	LTR	ERV1	chr17	28235280	28235282	-	CTD-2008P7.9	ENSG00000267259.1	ENST00000592016.1	lincRNA	chr17:28232590-28235281	TRUE	FALSE	chr17	28233802	28234199	ESR1:T-47D	1	.	28234007	28234008	224,168,84
chr17	70778681	70782004	chr17	70779181	70781504	+	L1MA5	chr17	70779181	70781504	LINE	L1	chr17	70779229	70779231	-	RP11-238F2.1	ENSG00000271239.1	ENST00000605009.1	lincRNA	chr17:70778604-70779230	FALSE	TRUE	chr17	70779088	70779369	ESR1:MCF-7,MDA-MB-134-VI,Ishikawa	4	.	70779227	70779228	224,168,84
chr17	70778681	70782004	chr17	70779181	70781504	+	L1MA5	chr17	70779181	70781504	LINE	L1	chr17	70779229	70779231	-	RP11-238F2.1	ENSG00000271239.1	ENST00000605009.1	lincRNA	chr17:70778604-70779230	FALSE	TRUE	chr17	70779522	70779683	ESR1:VCaP	1	.	70779570	70779571	224,168,84
chr17	70778681	70782004	chr17	70779181	70781504	+	L1MA5	chr17	70779181	70781504	LINE	L1	chr17	70779229	70779231	-	RP11-238F2.1	ENSG00000271239.1	ENST00000605009.1	lincRNA	chr17:70778604-70779230	FALSE	TRUE	chr17	70779675	70780107	ESR1:MCF-7,Ishikawa	4	.	70779864	70779865	224,168,84
chr17	70778681	70782004	chr17	70779181	70781504	+	L1MA5	chr17	70779181	70781504	LINE	L1	chr17	70779229	70779231	-	RP11-238F2.1	ENSG00000271239.1	ENST00000605009.1	lincRNA	chr17:70778604-70779230	FALSE	TRUE	chr17	70780096	70780265	ESR1:MCF-7,Ishikawa	2	.	70780166	70780167	224,168,84
chr18	39799602	39800935	chr18	39800102	39800435	-	MER61A	chr18	39800102	39800435	LTR	ERV1	chr18	39800317	39800319	-	RP11-244M2.1	ENSG00000267374.1	ENST00000591629.1	lincRNA	chr18:39206924-39800318	TRUE	FALSE	chr18	39799768	39800032	ESR1:Ishikawa	1	.	39799859	39799860	224,168,84
chr18	39799602	39800935	chr18	39800102	39800435	-	MER61A	chr18	39800102	39800435	LTR	ERV1	chr18	39800317	39800319	-	RP11-244M2.1	ENSG00000267374.1	ENST00000591629.1	lincRNA	chr18:39206924-39800318	TRUE	FALSE	chr18	39800148	39800392	ESR1:MCF-7,T-47D,breast	6	.	39800288	39800289	224,168,84
chr2	25369846	25371622	chr2	25370346	25371122	+	MER4E1	chr2	25370346	25371122	LTR	ERV1	chr2	25370686	25370688	-	AC012074.2	ENSG00000235072.2	ENST00000313031.2	lincRNA	chr2:25369136-25370687	TRUE	FALSE	chr2	25371371	25371573	ESR1:MCF-7	1	.	25371530	25371531	224,168,84
chr2	238300078	238301248	chr2	238300578	238300748	-	L4_A_Mam	chr2	238300578	238300748	LINE	RTE-X	chr2	238300619	238300621	-	AC012485.2	ENSG00000232306.2	ENST00000437372.2	lincRNA	chr2:238295392-238300620	TRUE	FALSE	chr2	238299748	238300151	ESR1:breast-cancer,endometrioid-adenocarcinoma,primary-endometrium-cancer,breast,T-47D	14	.	238299934	238299935	224,168,84
chr2	241970181	241971799	chr2	241970681	241971299	+	LTR71B	chr2	241970681	241971299	LTR	ERV1	chr2	241970682	241970684	+	LINC01238	ENSG00000237940.3	ENST00000429456.1	lincRNA	chr2:241970683-241977276	TRUE	FALSE	chr2	241971216	241971499	ESR1:MCF-7,breast	3	.	241971325	241971326	224,168,84
chr2	241970181	241971799	chr2	241970681	241971299	+	LTR71B	chr2	241970681	241971299	LTR	ERV1	chr2	241971277	241971279	+	LINC01238	ENSG00000237940.3	ENST00000426962.1	lincRNA	chr2:241971278-241971924	TRUE	FALSE	chr2	241971216	241971499	ESR1:MCF-7,breast	3	.	241971325	241971326	224,168,84
chr20	62602435	62603732	chr20	62602935	62603232	-	L1MEf	chr20	62602935	62603232	LINE	L1	chr20	62603114	62603116	-	WI2-87327B8.2	ENSG00000273812.1	ENST00000617730.1	lincRNA	chr20:62596732-62603115	TRUE	FALSE	chr20	62602885	62603342	ESR1:primary-breast-cancer,MCF-7,breast,T-47D,Ishikawa	45	.	62603099	62603100	224,168,84
chr21	36004608	36005943	chr21	36005108	36005443	+	MER48	chr21	36005108	36005443	LTR	ERV1	chr21	36005337	36005339	+	LINC01436	ENSG00000231106.2	ENST00000457157.2	lincRNA	chr21:36005338-36007838	TRUE	FALSE	chr21	36004969	36005320	ESR1:MCF-7	1	.	36005198	36005199	224,168,84
chr21	45004106	45005430	chr21	45004606	45004930	-	L1MB7	chr21	45004606	45004930	LINE	L1	chr21	45004726	45004728	-	PICSAR	ENSG00000275874.1	ENST00000615826.1	lincRNA	chr21:44999208-45004727	TRUE	FALSE	chr21	45003978	45004296	ESR1:MCF-7	2	.	45004166	45004167	224,168,84
chr21	45004106	45005430	chr21	45004606	45004930	-	L1MB7	chr21	45004606	45004930	LINE	L1	chr21	45004726	45004728	-	PICSAR	ENSG00000275874.1	ENST00000615826.1	lincRNA	chr21:44999208-45004727	TRUE	FALSE	chr21	45004419	45004822	ESR1:MCF-7	1	.	45004629	45004630	224,168,84
chr22	17067050	17068341	chr22	17067550	17067841	-	AluSz	chr22	17067550	17067841	SINE	Alu	chr22	17067820	17067822	+	AC006946.16	ENSG00000273203.1	ENST00000608373.1	lincRNA	chr22:17067821-17070675	TRUE	FALSE	chr22	17068074	17068354	ESR1:MCF-7	1	.	17068193	17068194	224,168,84
chr22	19016724	19018542	chr22	19017224	19018042	+	L1M2	chr22	19017224	19018042	LINE	L1	chr22	19017833	19017835	+	DGCR9	ENSG00000273032.1	ENST00000609630.1	lincRNA	chr22:19017834-19020248	TRUE	FALSE	chr22	19018264	19018485	ESR1:Ishikawa	1	.	19018416	19018417	224,168,84
chr22	20205178	20206913	chr22	20205678	20206413	-	LTR1A2	chr22	20205678	20206413	LTR	ERV1	chr22	20206396	20206398	+	LINC00896	ENSG00000236499.2	ENST00000609602.1	lincRNA	chr22:20206397-20208524	TRUE	FALSE	chr22	20205091	20205418	ESR1:U2OS,Ishikawa,MDA-MB-231	9	.	20205257	20205258	224,168,84
chr22	20205178	20206913	chr22	20205678	20206413	-	LTR1A2	chr22	20205678	20206413	LTR	ERV1	chr22	20206396	20206398	+	LINC00896	ENSG00000236499.2	ENST00000609602.1	lincRNA	chr22:20206397-20208524	TRUE	FALSE	chr22	20206309	20206403	ESR1:MCF-7	1	.	20206360	20206361	224,168,84
chr22	20205178	20206913	chr22	20205678	20206413	-	LTR1A2	chr22	20205678	20206413	LTR	ERV1	chr22	20206396	20206398	+	LINC00896	ENSG00000236499.2	ENST00000609602.1	lincRNA	chr22:20206397-20208524	TRUE	FALSE	chr22	20206388	20206581	ESR1:Ishikawa	1	.	20206487	20206488	224,168,84
chr22	23538230	23546508	chr22	23538730	23546008	+	HERVK-int	chr22	23538730	23546008	LTR	ERVK	chr22	23543862	23543864	+	PCAT14	ENSG00000280623.1	ENST00000627127.1	lincRNA	chr22:23543863-23547797	TRUE	FALSE	chr22	23539574	23539861	ESR1:MCF-7,Ishikawa	11	.	23539717	23539718	224,168,84
chr22	23538230	23546508	chr22	23538730	23546008	+	HERVK-int	chr22	23538730	23546008	LTR	ERVK	chr22	23543862	23543864	+	PCAT14	ENSG00000280623.1	ENST00000627127.1	lincRNA	chr22:23543863-23547797	TRUE	FALSE	chr22	23541826	23542081	ESR1:MCF-7	9	.	23541952	23541953	224,168,84
chr22	23538230	23546508	chr22	23538730	23546008	+	HERVK-int	chr22	23538730	23546008	LTR	ERVK	chr22	23543862	23543864	+	PCAT14	ENSG00000280623.1	ENST00000627127.1	lincRNA	chr22:23543863-23547797	TRUE	FALSE	chr22	23543104	23543279	ESR1:MDA-MB-134-VI	1	.	23543157	23543158	224,168,84
chr22	45263006	45264153	chr22	45263506	45263653	-	MIRc	chr22	45263506	45263653	SINE	MIR	chr22	45263584	45263586	-	CTA-268H5.14	ENSG00000273287.2	ENST00000609206.2	lincRNA	chr22:45262273-45263585	TRUE	FALSE	chr22	45262966	45263226	ESR1:Ishikawa	1	.	45263109	45263110	224,168,84
chr22	45263006	45264153	chr22	45263506	45263653	-	MIRc	chr22	45263506	45263653	SINE	MIR	chr22	45263584	45263586	-	CTA-268H5.14	ENSG00000273287.2	ENST00000609206.2	lincRNA	chr22:45262273-45263585	TRUE	FALSE	chr22	45263475	45263834	ESR1:MCF-7,U2OS,SUM44PE,VCaP,breast,T-47D,MDA-MB-134-VI,Ishikawa	151	.	45263634	45263635	224,168,84
chr22	49656830	49658200	chr22	49657330	49657700	-	MSTA	chr22	49657330	49657700	LTR	ERVL-MaLR	chr22	49657429	49657431	-	C22orf34	ENSG00000188511.12	ENST00000405854.5	lincRNA	chr22:49620471-49657430	FALSE	TRUE	chr22	49658181	49658318	ESR1:MCF-7	1	.	49658263	49658264	224,168,84
chr3	75672276	75676505	chr3	75672776	75676005	-	L1M1	chr3	75672776	75676005	LINE	L1	chr3	75674412	75674414	+	LINC00960	ENSG00000242516.1	ENST00000492922.1	lincRNA	chr3:75674413-75676625	TRUE	FALSE	chr3	75672344	75672621	ESR1:MCF-7,Ishikawa	9	.	75672455	75672456	224,168,84
chr3	158693244	158694396	chr3	158693744	158693896	-	MER5B	chr3	158693744	158693896	DNA	hAT-Charlie	chr3	158693767	158693769	-	RP11-379F4.7	ENSG00000272087.1	ENST00000607624.1	lincRNA	chr3:158693120-158693768	TRUE	FALSE	chr3	158693417	158693542	ESR1:T-47D	1	.	158693484	158693485	224,168,84
chr4	79490686	79493322	chr4	79491186	79492822	-	L1PBa	chr4	79491186	79492822	LINE	L1	chr4	79492415	79492417	+	LINC00989	ENSG00000250334.5	ENST00000508174.5	lincRNA	chr4:79492416-79576460	FALSE	TRUE	chr4	79492094	79492496	ESR1:MCF-7	2	.	79492273	79492274	224,168,84
chr4	79490686	79493322	chr4	79491186	79492822	-	L1PBa	chr4	79491186	79492822	LINE	L1	chr4	79492592	79492594	+	LINC00989	ENSG00000250334.5	ENST00000515544.1	lincRNA	chr4:79492593-79576458	FALSE	TRUE	chr4	79492094	79492496	ESR1:MCF-7	2	.	79492273	79492274	224,168,84
chr4	79663246	79664400	chr4	79663746	79663900	+	LTR33B	chr4	79663746	79663900	LTR	ERVL	chr4	79663760	79663762	+	RP11-452C8.1	ENSG00000248408.1	ENST00000506460.1	lincRNA	chr4:79663761-79696837	FALSE	TRUE	chr4	79662832	79663387	ESR1:endometrioid-adenocarcinoma,Ishikawa	32	.	79663080	79663081	224,168,84
chr5	95850483	95853149	chr5	95850983	95852649	+	LTR12C	chr5	95850983	95852649	LTR	ERV1	chr5	95852231	95852233	+	LINC01554	ENSG00000236882.7	ENST00000436592.5	lincRNA	chr5:95852232-95860133	TRUE	FALSE	chr5	95850480	95850674	ESR1:MCF-7,T-47D,breast	4	.	95850532	95850533	224,168,84
chr5	149406661	149407792	chr5	149407161	149407292	+	MIR3	chr5	149407161	149407292	SINE	MIR	chr5	149407244	149407246	+	CARMN	ENSG00000249669.9	ENST00000614517.1	lincRNA	chr5:149407245-149412768	TRUE	FALSE	chr5	149406520	149406836	ESR1:endometrioid-adenocarcinoma,primary-endometrium-cancer	2	.	149406651	149406652	224,168,84
chr5	149406661	149407792	chr5	149407161	149407292	+	MIR3	chr5	149407161	149407292	SINE	MIR	chr5	149407244	149407246	+	CARMN	ENSG00000249669.9	ENST00000614517.1	lincRNA	chr5:149407245-149412768	TRUE	FALSE	chr5	149406750	149407000	ESR1:breast	1	.	149406751	149406752	224,168,84
chr5	149406661	149407792	chr5	149407161	149407292	+	MIR3	chr5	149407161	149407292	SINE	MIR	chr5	149407244	149407246	+	CARMN	ENSG00000249669.9	ENST00000614517.1	lincRNA	chr5:149407245-149412768	TRUE	FALSE	chr5	149407299	149407695	ESR1:T-47D	1	.	149407401	149407402	224,168,84
chr6	42093435	42094779	chr6	42093935	42094279	-	LTR16	chr6	42093935	42094279	LTR	ERVL	chr6	42094258	42094260	-	RP11-7K24.3	ENSG00000261068.2	ENST00000562471.2	lincRNA	chr6:42092233-42094259	TRUE	FALSE	chr6	42093987	42094264	ESR1:MCF-7,T-47D,U2OS,breast	12	.	42094157	42094158	224,168,84
chr7	26551126	26552357	chr7	26551626	26551857	-	MIR	chr7	26551626	26551857	SINE	MIR	chr7	26551821	26551823	+	AC004947.2	ENSG00000233760.1	ENST00000420912.1	lincRNA	chr7:26551822-26557200	FALSE	TRUE	chr7	26551481	26551733	ESR1:MCF-7,T-47D,breast	21	.	26551608	26551609	224,168,84
chr8	53395392	53397571	chr8	53395892	53397071	-	MLT1H-int	chr8	53395892	53397071	LTR	ERVL-MaLR	chr8	53395945	53395947	-	RP11-1081M5.1	ENSG00000253369.1	ENST00000521558.1	lincRNA	chr8:53395211-53395946	TRUE	FALSE	chr8	53395514	53395716	ESR1:breast	1	.	53395551	53395552	224,168,84
chr8	53523124	53525214	chr8	53523624	53524714	-	HERV3-int	chr8	53523624	53524714	LTR	ERV1	chr8	53523930	53523932	-	RP11-400K9.4	ENSG00000237807.3	ENST00000426023.1	lincRNA	chr8:53515171-53523931	TRUE	FALSE	chr8	53523377	53523635	ESR1:T-47D	1	.	53523444	53523445	224,168,84
chr8	53523124	53525214	chr8	53523624	53524714	-	HERV3-int	chr8	53523624	53524714	LTR	ERV1	chr8	53523930	53523932	-	RP11-400K9.4	ENSG00000237807.3	ENST00000426023.1	lincRNA	chr8:53515171-53523931	TRUE	FALSE	chr8	53523769	53523994	ESR1:MCF-7,T-47D,ZR751,breast	22	.	53523860	53523861	224,168,84
chr8	119873943	119875032	chr8	119874443	119874532	+	MIRb	chr8	119874443	119874532	SINE	MIR	chr8	119874487	119874489	-	KB-1471A8.1	ENSG00000245330.4	ENST00000500705.3	lincRNA	chr8:119867419-119874488	TRUE	FALSE	chr8	119873831	119874259	ESR1:primary-breast-cancer,MCF-7,breast-cancer,SUM44PE,HCC1428,pleural-effusion,endometrioid-adenocarcinoma,breast,MDA-MB-231,T-47D,MDA-MB-134-VI,Ishikawa	183	.	119874044	119874045	224,168,84
chr8	134722268	134723644	chr8	134722768	134723144	+	MLT1B	chr8	134722768	134723144	LTR	ERVL-MaLR	chr8	134722946	134722948	+	CTD-2342N23.3	ENSG00000272456.1	ENST00000606279.1	lincRNA	chr8:134722947-134723949	TRUE	FALSE	chr8	134723226	134723512	ESR1:MCF-7	2	.	134723334	134723335	224,168,84
chr9	35771661	35772921	chr9	35772161	35772421	-	L2c	chr9	35772161	35772421	LINE	L2	chr9	35772310	35772312	+	RP11-112J3.16	ENSG00000227388.2	ENST00000431981.2	lincRNA	chr9:35772311-35790432	TRUE	FALSE	chr9	35771701	35772053	ESR1:primary-breast-cancer,MCF-7,breast-cancer,SUM44PE,ZR751,breast,T-47D,MDA-MB-134-VI	67	.	35771877	35771878	224,168,84
chr9	87041383	87048400	chr9	87041883	87047900	+	L1PA3	chr9	87041883	87047900	LINE	L1	chr9	87042125	87042127	-	RP11-276H19.2	ENSG00000269994.1	ENST00000602579.1	lincRNA	chr9:87008455-87042126	TRUE	FALSE	chr9	87041672	87041829	ESR1:MCF-7	1	.	87041673	87041674	224,168,84
chr9	87041383	87048400	chr9	87041883	87047900	+	L1PA3	chr9	87041883	87047900	LINE	L1	chr9	87042125	87042127	-	RP11-276H19.2	ENSG00000269994.1	ENST00000602579.1	lincRNA	chr9:87008455-87042126	TRUE	FALSE	chr9	87047910	87048118	ESR1:breast-cancer	1	.	87048049	87048050	224,168,84
chr9	129333214	129334525	chr9	129333714	129334025	+	L2b	chr9	129333714	129334025	LINE	L2	chr9	129333905	129333907	+	LINC01503	ENSG00000233901.5	ENST00000436710.5	lincRNA	chr9:129333906-129347399	TRUE	FALSE	chr9	129333686	129333882	ESR1:MCF-7,U2OS,Ishikawa,breast	14	.	129333774	129333775	224,168,84
chr9	129333214	129334525	chr9	129333714	129334025	+	L2b	chr9	129333714	129334025	LINE	L2	chr9	129333905	129333907	+	LINC01503	ENSG00000233901.5	ENST00000436710.5	lincRNA	chr9:129333906-129347399	TRUE	FALSE	chr9	129334091	129334673	ESR1:primary-breast-cancer,MCF-7,U2OS,breast-cancer,MCF-7-Luc,SUM44PE,endometrioid-adenocarcinoma,ZR751,breast,pleural-effusion,MCF-7-Luc-Y537S,MCF-7L,primary-endometrium-cancer,T-47D-B,MDA-MB-231,T-47D,MDA-MB-134-VI,Ishikawa	260	.	129334355	129334356	224,168,84