chr1	3073038	3073308	+	L1_Mus3	LINE	L1	chr1	3073252	3073254	+	ENSMUST00000193812.1,ENSMUSG00000102693.1	4933401J01Rik	ENSMUSG00000102693.1	ENSMUST00000193812.1	TEC	chr1:3073253-3074322
chr1	3102015	3102099	+	U6	snRNA	snRNA	chr1	3102015	3102017	+	ENSMUST00000082908.1,ENSMUSG00000064842.1	Gm26206	ENSMUSG00000064842.1	ENSMUST00000082908.1	snRNA	chr1:3102016-3102125
chr1	3215462	3215652	-	B3	SINE	B2	chr1	3215631	3215633	-	ENSMUST00000159265.1,ENSMUSG00000051951.5	Xkr4	ENSMUSG00000051951.5	ENSMUST00000159265.1	protein_coding	chr1:3206523-3215632
chr1	3377788	3377826	+	(A)n	Simple_repeat	Simple_repeat	chr1	3377787	3377789	-	ENSMUST00000192336.1,ENSMUSG00000104017.1	Gm37363	ENSMUSG00000104017.1	ENSMUST00000192336.1	TEC	chr1:3375556-3377788
chr1	3658810	3658959	+	RSINE1	SINE	B4	chr1	3658903	3658905	-	ENSMUST00000192692.1,ENSMUSG00000102331.1	Gm19938	ENSMUSG00000102331.1	ENSMUST00000192692.1	sense_intronic	chr1:3647309-3658904
chr1	3671388	3671650	+	C-rich	Low_complexity	Low_complexity	chr1	3671497	3671499	-	ENSMUST00000070533.4,ENSMUSG00000051951.5	Xkr4	ENSMUSG00000051951.5	ENSMUST00000070533.4	protein_coding	chr1:3214482-3671498
chr1	3680117	3680324	-	Lx5	LINE	L1	chr1	3680154	3680156	+	ENSMUST00000193244.1,ENSMUSG00000102348.1	Gm10568	ENSMUSG00000102348.1	ENSMUST00000193244.1	TEC	chr1:3680155-3681788
chr1	3751178	3752698	-	L1_Mur3	LINE	L1	chr1	3752009	3752011	+	ENSMUST00000194454.1,ENSMUSG00000102592.1	Gm38385	ENSMUSG00000102592.1	ENSMUST00000194454.1	TEC	chr1:3752010-3754360
chr1	3783745	3784155	-	RLTR25B	LTR	ERVK	chr1	3783932	3783934	-	ENSMUST00000157708.2,ENSMUSG00000088333.2	Gm27396	ENSMUSG00000088333.2	ENSMUST00000157708.2	snRNA	chr1:3783876-3783933
chr1	3985331	3986639	-	MuRRS4-int	LTR	ERV1	chr1	3986214	3986216	-	ENSMUST00000194643.1,ENSMUSG00000102343.1	Gm37381	ENSMUSG00000102343.1	ENSMUST00000194643.1	lincRNA	chr1:3905739-3986215
chr1	3985331	3986639	-	MuRRS4-int	LTR	ERV1	chr1	3985983	3985985	-	ENSMUST00000192427.1,ENSMUSG00000102343.1	Gm37381	ENSMUSG00000102343.1	ENSMUST00000192427.1	lincRNA	chr1:3984225-3985984
chr1	4364490	4365061	+	RMER15	LTR	ERVL	chr1	4364828	4364830	-	ENSMUST00000194382.1,ENSMUSG00000104123.1	Gm37483	ENSMUSG00000104123.1	ENSMUST00000194382.1	TEC	chr1:4363346-4364829
chr1	4529016	4529123	+	U6	snRNA	snRNA	chr1	4529016	4529018	+	ENSMUST00000180019.1,ENSMUSG00000096126.1	Gm22307	ENSMUSG00000096126.1	ENSMUST00000180019.1	snRNA	chr1:4529017-4529123
chr1	4586140	4586665	+	Lx8	LINE	L1	chr1	4586251	4586253	-	ENSMUST00000195771.1,ENSMUSG00000104328.1	Gm37323	ENSMUSG00000104328.1	ENSMUST00000195771.1	lincRNA	chr1:4583129-4586252
chr1	4723286	4723379	-	U6	snRNA	snRNA	chr1	4723378	4723380	-	ENSMUST00000157375.1,ENSMUSG00000088000.1	Gm25493	ENSMUSG00000088000.1	ENSMUST00000157375.1	snRNA	chr1:4723277-4723379
chr1	4735653	4735808	+	RodERV21-int	LTR	ERV1	chr1	4735675	4735677	-	ENSMUST00000195671.1,ENSMUSG00000103265.1	Gm2053	ENSMUSG00000103265.1	ENSMUST00000195671.1	processed_pseudogene	chr1:4735046-4735676
chr1	4779170	4779317	-	B1_Mus2	SINE	Alu	chr1	4779211	4779213	-	ENSMUST00000195445.1,ENSMUSG00000102275.1	Gm37144	ENSMUSG00000102275.1	ENSMUST00000195445.1	TEC	chr1:4778063-4779212
chr1	4784531	4784661	+	B1_Mm	SINE	Alu	chr1	4784565	4784567	-	ENSMUST00000192286.1,ENSMUSG00000033845.13	Mrpl15	ENSMUSG00000033845.13	ENSMUST00000192286.1	protein_coding	chr1:4779967-4784566
chr1	4807795	4807846	+	GC_rich	Low_complexity	Low_complexity	chr1	4807822	4807824	+	ENSMUST00000027036.10,ENSMUSG00000025903.14	Lypla1	ENSMUSG00000025903.14	ENSMUST00000027036.10	protein_coding	chr1:4807823-4846739
chr1	4807795	4807846	+	GC_rich	Low_complexity	Low_complexity	chr1	4807829	4807831	+	ENSMUST00000150971.7,ENSMUSG00000025903.14	Lypla1	ENSMUSG00000025903.14	ENSMUST00000150971.7	protein_coding	chr1:4807830-4841286
chr1	4906647	4907126	+	RMER21B	LTR	ERV1	chr1	4906860	4906862	-	ENSMUST00000194052.1,ENSMUSG00000103280.1	Gm37277	ENSMUSG00000103280.1	ENSMUST00000194052.1	TEC	chr1:4905751-4906861
chr1	4940622	4940732	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr1	4940709	4940711	-	ENSMUST00000194114.1,ENSMUSG00000102653.1	Gm37079	ENSMUSG00000102653.1	ENSMUST00000194114.1	TEC	chr1:4938576-4940710
chr1	5307599	5307948	+	ORR1A0	LTR	ERVL-MaLR	chr1	5307738	5307740	+	ENSMUST00000193241.1,ENSMUSG00000104046.1	Gm37567	ENSMUSG00000104046.1	ENSMUST00000193241.1	TEC	chr1:5307739-5310017
chr1	5403042	5405428	+	Lx5	LINE	L1	chr1	5403546	5403548	+	ENSMUST00000194850.1,ENSMUSG00000102907.1	Gm38264	ENSMUSG00000102907.1	ENSMUST00000194850.1	TEC	chr1:5403547-5405578
chr1	5618224	5618301	+	MT2B	LTR	ERVL	chr1	5618229	5618231	-	ENSMUST00000193797.1,ENSMUSG00000103936.1	Gm36965	ENSMUSG00000103936.1	ENSMUST00000193797.1	processed_pseudogene	chr1:5617837-5618230
chr1	5644422	5644813	-	MTA_Mm	LTR	ERVL-MaLR	chr1	5644744	5644746	-	ENSMUST00000175274.1,ENSMUSG00000093015.1	Gm22463	ENSMUSG00000093015.1	ENSMUST00000175274.1	miRNA	chr1:5644645-5644745
chr1	5844633	5845424	-	Lx6	LINE	L1	chr1	5844671	5844673	-	ENSMUST00000193807.1,ENSMUSG00000103519.1	Gm37429	ENSMUSG00000103519.1	ENSMUST00000193807.1	TEC	chr1:5842874-5844672
chr1	6205919	6206376	+	MT2B1	LTR	ERVL	chr1	6206196	6206198	+	ENSMUST00000159906.7,ENSMUSG00000025907.14	Rb1cc1	ENSMUSG00000025907.14	ENSMUST00000159906.7	protein_coding	chr1:6206197-6234311
chr1	6205919	6206376	+	MT2B1	LTR	ERVL	chr1	6206226	6206228	+	ENSMUST00000160871.7,ENSMUSG00000025907.14	Rb1cc1	ENSMUSG00000025907.14	ENSMUST00000160871.7	protein_coding	chr1:6206227-6238384
chr1	6864130	6864578	+	Lx7	LINE	L1	chr1	6864150	6864152	-	ENSMUST00000195780.2,ENSMUSG00000103329.2	Gm42492	ENSMUSG00000103329.2	ENSMUST00000195780.2	TEC	chr1:6861237-6864151
chr1	7011330	7014933	+	MMERVK9C_I-int	LTR	ERVK	chr1	7013761	7013763	+	ENSMUST00000191883.1,ENSMUSG00000102213.1	Gm37489	ENSMUSG00000102213.1	ENSMUST00000191883.1	processed_pseudogene	chr1:7013762-7013920
chr1	7497593	7498010	+	LTRIS2	LTR	ERV1	chr1	7497967	7497969	+	ENSMUST00000194886.1,ENSMUSG00000103067.1	Gm30414	ENSMUSG00000103067.1	ENSMUST00000194886.1	lincRNA	chr1:7497968-7518149
chr1	8470316	8470766	+	RMER17A2	LTR	ERVK	chr1	8470519	8470521	-	ENSMUST00000115484.8,ENSMUSG00000025909.16	Sntg1	ENSMUSG00000025909.16	ENSMUST00000115484.8	protein_coding	chr1:8363183-8470520
chr1	8470316	8470766	+	RMER17A2	LTR	ERVK	chr1	8470478	8470480	-	ENSMUST00000135046.3,ENSMUSG00000025909.16	Sntg1	ENSMUSG00000025909.16	ENSMUST00000135046.3	protein_coding	chr1:8363425-8470479
chr1	8529863	8533575	+	Lx7	LINE	L1	chr1	8531312	8531314	-	ENSMUST00000194602.1,ENSMUSG00000102253.1	Gm38259	ENSMUSG00000102253.1	ENSMUST00000194602.1	TEC	chr1:8527780-8531313
chr1	8588410	8588928	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	8588723	8588725	-	ENSMUST00000103887.2,ENSMUSG00000093970.1	Gm23358	ENSMUSG00000093970.1	ENSMUST00000103887.2	miRNA	chr1:8588615-8588724
chr1	8951935	8952476	+	Lx9	LINE	L1	chr1	8952421	8952423	-	ENSMUST00000194098.1,ENSMUSG00000025909.16	Sntg1	ENSMUSG00000025909.16	ENSMUST00000194098.1	protein_coding	chr1:8950310-8952422
chr1	9191839	9192839	+	Lx2A1	LINE	L1	chr1	9192115	9192117	-	ENSMUST00000193635.1,ENSMUSG00000102316.1	Gm37629	ENSMUSG00000102316.1	ENSMUST00000193635.1	TEC	chr1:9191067-9192116
chr1	9458669	9458771	+	U6	snRNA	snRNA	chr1	9458669	9458671	+	ENSMUST00000083691.1,ENSMUSG00000065625.1	Gm24765	ENSMUSG00000065625.1	ENSMUST00000083691.1	snRNA	chr1:9458670-9458772
chr1	9798092	9798118	+	(CCCG)n	Simple_repeat	Simple_repeat	chr1	9798106	9798108	+	ENSMUST00000166384.7,ENSMUSG00000025915.14	Sgk3	ENSMUSG00000025915.14	ENSMUST00000166384.7	protein_coding	chr1:9798107-9900843
chr1	9798160	9798186	+	GC_rich	Low_complexity	Low_complexity	chr1	9798184	9798186	+	ENSMUST00000188738.6,ENSMUSG00000025915.14	Sgk3	ENSMUSG00000025915.14	ENSMUST00000188738.6	protein_coding	chr1:9798185-9899618
chr1	9894877	9895486	-	Lx7	LINE	L1	chr1	9895426	9895428	+	ENSMUST00000188486.1,ENSMUSG00000025915.14	Sgk3	ENSMUSG00000025915.14	ENSMUST00000188486.1	protein_coding	chr1:9895427-9899174
chr1	9942780	9943056	+	MTC	LTR	ERVL-MaLR	chr1	9942896	9942898	-	ENSMUST00000182043.7,ENSMUSG00000098234.7	Snhg6	ENSMUSG00000098234.7	ENSMUST00000182043.7	lincRNA	chr1:9942025-9942897
chr1	10009813	10009917	-	U6	snRNA	snRNA	chr1	10009916	10009918	-	ENSMUST00000179194.1,ENSMUSG00000095780.1	Gm24674	ENSMUSG00000095780.1	ENSMUST00000179194.1	snRNA	chr1:10009814-10009917
chr1	10074238	10074414	+	B3A	SINE	B2	chr1	10074381	10074383	+	ENSMUST00000188249.6,ENSMUSG00000056763.16	Cspp1	ENSMUSG00000056763.16	ENSMUST00000188249.6	protein_coding	chr1:10074382-10085817
chr1	10115070	10115594	-	RLTR28	LTR	ERVL	chr1	10115424	10115426	+	ENSMUST00000136283.1,ENSMUSG00000056763.16	Cspp1	ENSMUSG00000056763.16	ENSMUST00000136283.1	protein_coding	chr1:10115425-10116731
chr1	10161173	10161365	-	B2_Mm1a	SINE	B2	chr1	10161305	10161307	-	ENSMUST00000128834.1,ENSMUSG00000067851.11	Arfgef1	ENSMUSG00000067851.11	ENSMUST00000128834.1	protein_coding	chr1:10160757-10161306
chr1	10166518	10166713	+	7SK	RNA	RNA	chr1	10166538	10166540	+	ENSMUST00000157528.1,ENSMUSG00000088153.1	Gm26348	ENSMUSG00000088153.1	ENSMUST00000157528.1	misc_RNA	chr1:10166539-10166778
chr1	10232500	10232675	+	G-rich	Low_complexity	Low_complexity	chr1	10232669	10232671	-	ENSMUST00000088615.10,ENSMUSG00000067851.11	Arfgef1	ENSMUSG00000067851.11	ENSMUST00000088615.10	protein_coding	chr1:10137571-10232670
chr1	10232500	10232675	+	G-rich	Low_complexity	Low_complexity	chr1	10232669	10232671	-	ENSMUST00000131556.1,ENSMUSG00000067851.11	Arfgef1	ENSMUSG00000067851.11	ENSMUST00000131556.1	protein_coding	chr1:10173075-10232670
chr1	10555553	10555660	-	U6	snRNA	snRNA	chr1	10555552	10555554	-	ENSMUST00000118350.1,ENSMUSG00000083422.1	Gm15604	ENSMUSG00000083422.1	ENSMUST00000118350.1	processed_pseudogene	chr1:10554098-10555553
chr1	10555553	10555660	-	U6	snRNA	snRNA	chr1	10555659	10555661	-	ENSMUST00000179958.1,ENSMUSG00000094979.1	Gm25253	ENSMUSG00000094979.1	ENSMUST00000179958.1	snRNA	chr1:10555554-10555660
chr1	11257739	11258250	+	MT2_Mm	LTR	ERVL	chr1	11258066	11258068	+	ENSMUST00000188189.6,ENSMUSG00000048960.13	Prex2	ENSMUSG00000048960.13	ENSMUST00000188189.6	protein_coding	chr1:11258067-11297898
chr1	11257739	11258250	+	MT2_Mm	LTR	ERVL	chr1	11258105	11258107	+	ENSMUST00000187745.6,ENSMUSG00000048960.13	Prex2	ENSMUSG00000048960.13	ENSMUST00000187745.6	protein_coding	chr1:11258106-11298005
chr1	11263662	11264173	+	MT2_Mm	LTR	ERVL	chr1	11263962	11263964	+	ENSMUST00000189385.6,ENSMUSG00000048960.13	Prex2	ENSMUSG00000048960.13	ENSMUST00000189385.6	protein_coding	chr1:11263963-11299594
chr1	11283511	11284546	-	Lx3B	LINE	L1	chr1	11283992	11283994	+	ENSMUST00000188154.1,ENSMUSG00000048960.13	Prex2	ENSMUSG00000048960.13	ENSMUST00000188154.1	protein_coding	chr1:11283993-11298204
chr1	11365898	11367490	-	Lx2	LINE	L1	chr1	11366963	11366965	-	ENSMUST00000193623.1,ENSMUSG00000103494.1	Gm37410	ENSMUSG00000103494.1	ENSMUST00000193623.1	TEC	chr1:11363926-11366964
chr1	11578830	11580530	-	L1VL2	LINE	L1	chr1	11579305	11579307	+	ENSMUST00000191437.1,ENSMUSG00000057715.13	A830018L16Rik	ENSMUSG00000057715.13	ENSMUST00000191437.1	protein_coding	chr1:11579306-11596631
chr1	11704000	11704337	+	BGLII_A	LTR	ERVK	chr1	11704206	11704208	+	ENSMUST00000195360.1,ENSMUSG00000103561.1	Gm38069	ENSMUSG00000103561.1	ENSMUST00000195360.1	TEC	chr1:11704207-11706350
chr1	12374935	12375042	+	U6	snRNA	snRNA	chr1	12374935	12374937	+	ENSMUST00000179834.1,ENSMUSG00000093864.1	Gm22633	ENSMUSG00000093864.1	ENSMUST00000179834.1	snRNA	chr1:12374936-12375042
chr1	12662852	12668535	-	L1Md_T	LINE	L1	chr1	12667562	12667564	+	ENSMUST00000181272.1,ENSMUSG00000097171.1	Gm17644	ENSMUSG00000097171.1	ENSMUST00000181272.1	lincRNA	chr1:12667563-12673090
chr1	12924901	12925202	+	Tigger17a	DNA	TcMar-Tigger	chr1	12925042	12925044	-	ENSMUST00000133201.2,ENSMUSG00000025938.16	Slco5a1	ENSMUSG00000025938.16	ENSMUST00000133201.2	protein_coding	chr1:12881330-12925043
chr1	13146614	13146805	-	ID_B1	SINE	B4	chr1	13146629	13146631	-	ENSMUST00000185275.1,ENSMUSG00000005886.14	Ncoa2	ENSMUSG00000005886.14	ENSMUST00000185275.1	protein_coding	chr1:13145301-13146630
chr1	13290506	13290539	+	(CCCCCA)n	Simple_repeat	Simple_repeat	chr1	13290505	13290507	-	ENSMUST00000194484.1,ENSMUSG00000102639.1	Gm38223	ENSMUSG00000102639.1	ENSMUST00000194484.1	TEC	chr1:13289812-13290506
chr1	13334497	13334609	-	U6	snRNA	snRNA	chr1	13334608	13334610	-	ENSMUST00000157157.1,ENSMUSG00000087782.1	Gm23169	ENSMUSG00000087782.1	ENSMUST00000157157.1	snRNA	chr1:13334498-13334609
chr1	13347931	13348409	-	MT2C_Mm	LTR	ERVL	chr1	13348203	13348205	-	ENSMUST00000195506.1,ENSMUSG00000103085.1	Gm38120	ENSMUSG00000103085.1	ENSMUST00000195506.1	TEC	chr1:13343563-13348204
chr1	13374083	13374109	+	(TCC)n	Simple_repeat	Simple_repeat	chr1	13374082	13374084	-	ENSMUST00000068304.12,ENSMUSG00000005886.14	Ncoa2	ENSMUSG00000005886.14	ENSMUST00000068304.12	protein_coding	chr1:13139159-13374083
chr1	13374083	13374109	+	(TCC)n	Simple_repeat	Simple_repeat	chr1	13374082	13374084	-	ENSMUST00000006037.12,ENSMUSG00000005886.14	Ncoa2	ENSMUSG00000005886.14	ENSMUST00000006037.12	protein_coding	chr1:13142475-13374083
chr1	13374083	13374109	+	(TCC)n	Simple_repeat	Simple_repeat	chr1	13374082	13374084	-	ENSMUST00000147927.7,ENSMUSG00000005886.14	Ncoa2	ENSMUSG00000005886.14	ENSMUST00000147927.7	protein_coding	chr1:13164501-13374083
chr1	13589897	13589938	+	(A)n	Simple_repeat	Simple_repeat	chr1	13589909	13589911	-	ENSMUST00000027068.10,ENSMUSG00000025935.10	Tram1	ENSMUSG00000025935.10	ENSMUST00000027068.10	protein_coding	chr1:13564698-13589910
chr1	13642742	13642786	+	(A)n	Simple_repeat	Simple_repeat	chr1	13642747	13642749	-	ENSMUST00000194537.1,ENSMUSG00000102982.1	Gm38319	ENSMUSG00000102982.1	ENSMUST00000194537.1	TEC	chr1:13641483-13642748
chr1	13849107	13849135	+	(GAAA)n	Simple_repeat	Simple_repeat	chr1	13849118	13849120	-	ENSMUST00000194709.1,ENSMUSG00000102166.1	Gm36947	ENSMUSG00000102166.1	ENSMUST00000194709.1	TEC	chr1:13846871-13849119
chr1	13932199	13932423	-	RLTR20A4	LTR	ERVK	chr1	13932377	13932379	+	ENSMUST00000158733.1,ENSMUSG00000089358.1	Gm25491	ENSMUSG00000089358.1	ENSMUST00000158733.1	misc_RNA	chr1:13932378-13932685
chr1	14112671	14113208	+	L1_Mur2	LINE	L1	chr1	14112818	14112820	-	ENSMUST00000193148.1,ENSMUSG00000104209.1	Gm37400	ENSMUSG00000104209.1	ENSMUST00000193148.1	TEC	chr1:14109215-14112819
chr1	14182509	14182902	+	MTA_Mm	LTR	ERVL-MaLR	chr1	14182577	14182579	+	ENSMUST00000179783.1,ENSMUSG00000095853.1	Gm22616	ENSMUSG00000095853.1	ENSMUST00000179783.1	miRNA	chr1:14182578-14182677
chr1	14255918	14256524	-	L1Md_F2	LINE	L1	chr1	14255989	14255991	-	ENSMUST00000193605.1,ENSMUSG00000102588.1	Gm37444	ENSMUSG00000102588.1	ENSMUST00000193605.1	TEC	chr1:14255552-14255990
chr1	14788456	14788682	-	RMER15	LTR	ERVL	chr1	14788644	14788646	+	ENSMUST00000194866.1,ENSMUSG00000103492.1	Gm37412	ENSMUSG00000103492.1	ENSMUST00000194866.1	TEC	chr1:14788645-14792965
chr1	15556205	15556296	+	Lx8	LINE	L1	chr1	15556248	15556250	+	ENSMUST00000194564.1,ENSMUSG00000104149.1	Gm37138	ENSMUSG00000104149.1	ENSMUST00000194564.1	TEC	chr1:15556249-15558337
chr1	15760654	15760759	+	ORR1A2	LTR	ERVL-MaLR	chr1	15760667	15760669	-	ENSMUST00000188671.1,ENSMUSG00000101652.1	Gm6060	ENSMUSG00000101652.1	ENSMUST00000188671.1	processed_pseudogene	chr1:15760122-15760668
chr1	16081115	16081257	-	B1_Mur1	SINE	Alu	chr1	16081211	16081213	-	ENSMUST00000115367.7,ENSMUSG00000067795.13	4930444P10Rik	ENSMUSG00000067795.13	ENSMUST00000115367.7	protein_coding	chr1:16065979-16081212
chr1	16081140	16081331	-	B4	SINE	B4	chr1	16081211	16081213	-	ENSMUST00000115367.7,ENSMUSG00000067795.13	4930444P10Rik	ENSMUSG00000067795.13	ENSMUST00000115367.7	protein_coding	chr1:16065979-16081212
chr1	16102016	16102110	+	PB1D9	SINE	Alu	chr1	16102081	16102083	-	ENSMUST00000140597.7,ENSMUSG00000043716.13	Rpl7	ENSMUSG00000043716.13	ENSMUST00000140597.7	protein_coding	chr1:16101295-16102082
chr1	16210475	16210589	+	L1MEd	LINE	L1	chr1	16210516	16210518	-	ENSMUST00000192560.1,ENSMUSG00000104165.1	Gm38249	ENSMUSG00000104165.1	ENSMUST00000192560.1	TEC	chr1:16208197-16210517
chr1	16375390	16375776	+	MTC	LTR	ERVL-MaLR	chr1	16375394	16375396	-	ENSMUST00000115360.7,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000115360.7	protein_coding	chr1:16344198-16375395
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519305	16519307	-	ENSMUST00000162751.7,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000162751.7	protein_coding	chr1:16228674-16519306
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519227	16519229	-	ENSMUST00000054668.12,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000054668.12	protein_coding	chr1:16228801-16519228
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519227	16519229	-	ENSMUST00000162627.7,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000162627.7	protein_coding	chr1:16228804-16519228
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519305	16519307	-	ENSMUST00000027052.12,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000027052.12	protein_coding	chr1:16228810-16519306
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519246	16519248	-	ENSMUST00000128957.8,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000128957.8	protein_coding	chr1:16343486-16519247
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519239	16519241	-	ENSMUST00000162007.7,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000162007.7	protein_coding	chr1:16344291-16519240
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519252	16519254	-	ENSMUST00000127420.7,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000127420.7	protein_coding	chr1:16344299-16519253
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519306	16519308	-	ENSMUST00000149320.8,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000149320.8	protein_coding	chr1:16345594-16519307
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519269	16519271	-	ENSMUST00000151888.7,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000151888.7	protein_coding	chr1:16394143-16519270
chr1	16519225	16519370	+	C-rich	Low_complexity	Low_complexity	chr1	16519259	16519261	-	ENSMUST00000115359.9,ENSMUSG00000025920.19	Stau2	ENSMUSG00000025920.19	ENSMUST00000115359.9	protein_coding	chr1:16459715-16519260
chr1	16897803	16898295	+	MT2_Mm	LTR	ERVL	chr1	16898184	16898186	+	ENSMUST00000186604.1,ENSMUSG00000101640.1	Gm28376	ENSMUSG00000101640.1	ENSMUST00000186604.1	antisense	chr1:16898185-17091631
chr1	17124513	17124832	+	IAP1-MM_LTR	LTR	ERVK	chr1	17124746	17124748	+	ENSMUST00000188872.1,ENSMUSG00000100110.1	Gm28783	ENSMUSG00000100110.1	ENSMUST00000188872.1	lincRNA	chr1:17124747-17128956
chr1	17168236	17168594	+	MTA_Mm	LTR	ERVL-MaLR	chr1	17168402	17168404	+	ENSMUST00000187817.1,ENSMUSG00000099899.1	Gm28784	ENSMUSG00000099899.1	ENSMUST00000187817.1	lincRNA	chr1:17168403-17173103
chr1	17641070	17641247	+	(TCC)n	Simple_repeat	Simple_repeat	chr1	17641080	17641082	-	ENSMUST00000186267.1,ENSMUSG00000100053.1	Gm28154	ENSMUSG00000100053.1	ENSMUST00000186267.1	antisense	chr1:17615084-17641081
chr1	19037035	19037266	+	Lx2A	LINE	L1	chr1	19037265	19037267	+	ENSMUST00000185386.1,ENSMUSG00000101644.1	Gm28343	ENSMUSG00000101644.1	ENSMUST00000185386.1	processed_pseudogene	chr1:19037266-19037377
chr1	19208913	19208981	+	RLTR20A4	LTR	ERVK	chr1	19208913	19208915	+	ENSMUST00000027059.10,ENSMUSG00000025927.13	Tfap2b	ENSMUSG00000025927.13	ENSMUST00000027059.10	protein_coding	chr1:19208914-19238576
chr1	19208913	19208981	+	RLTR20A4	LTR	ERVK	chr1	19208959	19208961	+	ENSMUST00000187754.6,ENSMUSG00000025927.13	Tfap2b	ENSMUSG00000025927.13	ENSMUST00000187754.6	protein_coding	chr1:19208960-19238083
chr1	19213878	19213938	+	CT-rich	Low_complexity	Low_complexity	chr1	19213878	19213880	+	ENSMUST00000186972.1,ENSMUSG00000025927.13	Tfap2b	ENSMUSG00000025927.13	ENSMUST00000186972.1	protein_coding	chr1:19213879-19219253
chr1	20065179	20065809	+	L1_Mus1	LINE	L1	chr1	20065547	20065549	-	ENSMUST00000194347.1,ENSMUSG00000104095.1	Gm37315	ENSMUSG00000104095.1	ENSMUST00000194347.1	TEC	chr1:20062070-20065548
chr1	20356378	20356714	+	MTE2b	LTR	ERVL-MaLR	chr1	20356451	20356453	+	ENSMUST00000161509.2,ENSMUSG00000089914.2	4930486I03Rik	ENSMUSG00000089914.2	ENSMUST00000161509.2	antisense	chr1:20356452-20392300
chr1	20444810	20444912	-	U6	snRNA	snRNA	chr1	20444809	20444811	-	ENSMUST00000160969.2,ENSMUSG00000090142.2	Gm15795	ENSMUSG00000090142.2	ENSMUST00000160969.2	processed_pseudogene	chr1:20444258-20444810
chr1	20444810	20444912	-	U6	snRNA	snRNA	chr1	20444911	20444913	-	ENSMUST00000093665.1,ENSMUSG00000070175.1	Gm24162	ENSMUSG00000070175.1	ENSMUST00000093665.1	snRNA	chr1:20444811-20444912
chr1	20790406	20790799	-	MTA_Mm	LTR	ERVL-MaLR	chr1	20790616	20790618	-	ENSMUST00000189301.1,ENSMUSG00000041872.9	Il17f	ENSMUSG00000041872.9	ENSMUST00000189301.1	protein_coding	chr1:20777783-20790617
chr1	20790406	20790799	-	MTA_Mm	LTR	ERVL-MaLR	chr1	20790584	20790586	-	ENSMUST00000190692.1,ENSMUSG00000041872.9	Il17f	ENSMUSG00000041872.9	ENSMUST00000190692.1	protein_coding	chr1:20787479-20790585
chr1	20836341	20836706	+	RMER17C	LTR	ERVK	chr1	20836660	20836662	+	ENSMUST00000185290.1,ENSMUSG00000102121.1	Gm28065	ENSMUSG00000102121.1	ENSMUST00000185290.1	lincRNA	chr1:20836661-20839689
chr1	21349551	21349657	+	B1F2	SINE	Alu	chr1	21349640	21349642	+	ENSMUST00000088407.3,ENSMUSG00000067750.3	Khdc1a	ENSMUSG00000067750.3	ENSMUST00000088407.3	protein_coding	chr1:21349641-21352200
chr1	21383476	21383584	+	B1_Mur2	SINE	Alu	chr1	21383555	21383557	+	ENSMUST00000147615.1,ENSMUSG00000085079.3	Khdc1b	ENSMUSG00000085079.3	ENSMUST00000147615.1	protein_coding	chr1:21383556-21386373
chr1	21457013	21457048	+	(TCCC)n	Simple_repeat	Simple_repeat	chr1	21457016	21457018	-	ENSMUST00000192487.1,ENSMUSG00000104138.1	Gm36949	ENSMUSG00000104138.1	ENSMUST00000192487.1	TEC	chr1:21454691-21457017
chr1	21840181	21840616	+	L1Md_F2	LINE	L1	chr1	21840513	21840515	-	ENSMUST00000194737.1,ENSMUSG00000103748.1	Gm38243	ENSMUSG00000103748.1	ENSMUST00000194737.1	TEC	chr1:21838948-21840514
chr1	23293544	23293806	+	L1_Mus2	LINE	L1	chr1	23293728	23293730	+	ENSMUST00000190910.1,ENSMUSG00000100775.1	Gm29107	ENSMUSG00000100775.1	ENSMUST00000190910.1	lincRNA	chr1:23293729-23294075
chr1	23380615	23381380	+	L2	LINE	L2	chr1	23380800	23380802	-	ENSMUST00000186064.6,ENSMUSG00000026158.11	Ogfrl1	ENSMUSG00000026158.11	ENSMUST00000186064.6	protein_coding	chr1:23369724-23380801
chr1	23383165	23383229	+	GC_rich	Low_complexity	Low_complexity	chr1	23383174	23383176	-	ENSMUST00000027343.5,ENSMUSG00000026158.11	Ogfrl1	ENSMUSG00000026158.11	ENSMUST00000027343.5	protein_coding	chr1:23366424-23383175
chr1	23761722	23761765	+	(CA)n	Simple_repeat	Simple_repeat	chr1	23761752	23761754	+	ENSMUST00000144602.1,ENSMUSG00000026156.8	B3gat2	ENSMUSG00000026156.8	ENSMUST00000144602.1	protein_coding	chr1:23761753-23815740
chr1	23922274	23922330	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	23922316	23922318	-	ENSMUST00000027339.13,ENSMUSG00000026155.13	Smap1	ENSMUSG00000026155.13	ENSMUST00000027339.13	protein_coding	chr1:23845625-23922317
chr1	24100319	24100340	+	GC_rich	Low_complexity	Low_complexity	chr1	24100332	24100334	-	ENSMUST00000027337.14,ENSMUSG00000026153.15	Fam135a	ENSMUSG00000026153.15	ENSMUST00000027337.14	protein_coding	chr1:24011681-24100333
chr1	24616184	24616803	-	L1_Mm	LINE	L1	chr1	24616196	24616198	-	ENSMUST00000187117.1,ENSMUSG00000101249.1	Gm29216	ENSMUSG00000101249.1	ENSMUST00000187117.1	unprocessed_pseudogene	chr1:24615706-24616197
chr1	24964038	24965231	+	L1Md_F2	LINE	L1	chr1	24964975	24964977	-	ENSMUST00000186563.1,ENSMUSG00000100483.1	Gm28237	ENSMUSG00000100483.1	ENSMUST00000186563.1	lincRNA	chr1:24963209-24964976
chr1	24964038	24965231	+	L1Md_F2	LINE	L1	chr1	24965157	24965159	-	ENSMUST00000189477.1,ENSMUSG00000100483.1	Gm28237	ENSMUSG00000100483.1	ENSMUST00000189477.1	lincRNA	chr1:24963996-24965158
chr1	25026971	25027328	-	MTE2b	LTR	ERVL-MaLR	chr1	25027231	25027233	-	ENSMUST00000185379.1,ENSMUSG00000099392.1	Gm29414	ENSMUSG00000099392.1	ENSMUST00000185379.1	lincRNA	chr1:25026581-25027232
chr1	25277895	25279442	-	L1_Mus2	LINE	L1	chr1	25277953	25277955	-	ENSMUST00000193138.1,ENSMUSG00000104257.1	Gm20172	ENSMUSG00000104257.1	ENSMUST00000193138.1	TEC	chr1:25276404-25277954
chr1	25279444	25279551	-	U6	snRNA	snRNA	chr1	25279550	25279552	-	ENSMUST00000178643.1,ENSMUSG00000096866.1	Gm22260	ENSMUSG00000096866.1	ENSMUST00000178643.1	snRNA	chr1:25279445-25279551
chr1	25285235	25285346	+	B3A	SINE	B2	chr1	25285247	25285249	-	ENSMUST00000192443.1,ENSMUSG00000102296.1	Gm37543	ENSMUSG00000102296.1	ENSMUST00000192443.1	TEC	chr1:25284218-25285248
chr1	25299864	25299917	+	(CA)n	Simple_repeat	Simple_repeat	chr1	25299885	25299887	-	ENSMUST00000192367.1,ENSMUSG00000103209.1	Gm37331	ENSMUSG00000103209.1	ENSMUST00000192367.1	TEC	chr1:25296512-25299886
chr1	25349067	25349089	+	AT_rich	Low_complexity	Low_complexity	chr1	25349081	25349083	-	ENSMUST00000195128.1,ENSMUSG00000103214.1	Gm38286	ENSMUSG00000103214.1	ENSMUST00000195128.1	TEC	chr1:25345978-25349082
chr1	25365710	25365861	-	IMPB_01	Satellite	Satellite	chr1	25365819	25365821	-	ENSMUST00000192216.1,ENSMUSG00000104100.1	Gm37880	ENSMUSG00000104100.1	ENSMUST00000192216.1	TEC	chr1:25362564-25365820
chr1	25451070	25451169	+	U6	snRNA	snRNA	chr1	25451070	25451072	+	ENSMUST00000122791.1,ENSMUSG00000084740.1	Gm25294	ENSMUSG00000084740.1	ENSMUST00000122791.1	snRNA	chr1:25451071-25451174
chr1	25611083	25611381	+	L1Md_F2	LINE	L1	chr1	25611183	25611185	-	ENSMUST00000195543.1,ENSMUSG00000103889.1	Gm37011	ENSMUSG00000103889.1	ENSMUST00000195543.1	TEC	chr1:25608250-25611184
chr1	25676020	25676423	+	ORR1A4	LTR	ERVL-MaLR	chr1	25676238	25676240	-	ENSMUST00000193573.1,ENSMUSG00000102250.1	Gm38260	ENSMUSG00000102250.1	ENSMUST00000193573.1	TEC	chr1:25672245-25676239
chr1	25724672	25724789	+	Lx9	LINE	L1	chr1	25724777	25724779	-	ENSMUST00000192614.1,ENSMUSG00000103563.1	8030445P17Rik	ENSMUSG00000103563.1	ENSMUST00000192614.1	TEC	chr1:25722038-25724778
chr1	25738097	25739518	+	L1VL1	LINE	L1	chr1	25738968	25738970	-	ENSMUST00000191772.1,ENSMUSG00000102465.1	Gm38198	ENSMUSG00000102465.1	ENSMUST00000191772.1	TEC	chr1:25735389-25738969
chr1	25758231	25759513	+	L1_Mus1	LINE	L1	chr1	25759032	25759034	-	ENSMUST00000195723.1,ENSMUSG00000102659.1	Gm37077	ENSMUSG00000102659.1	ENSMUST00000195723.1	TEC	chr1:25755343-25759033
chr1	25809878	25810040	+	MYSERV16_I-int	LTR	ERVK	chr1	25809971	25809973	-	ENSMUST00000193912.1,ENSMUSG00000102386.1	2900022M07Rik	ENSMUSG00000102386.1	ENSMUST00000193912.1	TEC	chr1:25808956-25809972
chr1	26566513	26566875	+	L1_Mur3	LINE	L1	chr1	26566832	26566834	+	ENSMUST00000157486.1,ENSMUSG00000088111.1	Gm24064	ENSMUSG00000088111.1	ENSMUST00000157486.1	snoRNA	chr1:26566833-26566938
chr1	26959100	26959221	-	5S	rRNA	rRNA	chr1	26959220	26959222	-	ENSMUST00000179494.1,ENSMUSG00000095256.1	n-R5s209	ENSMUSG00000095256.1	ENSMUST00000179494.1	rRNA	chr1:26959103-26959221
chr1	28569915	28569962	-	L1_Mus2	LINE	L1	chr1	28569917	28569919	+	ENSMUST00000193585.1,ENSMUSG00000103241.1	Gm38089	ENSMUSG00000103241.1	ENSMUST00000193585.1	TEC	chr1:28569918-28571431
chr1	29280969	29281075	-	HY1	scRNA	scRNA	chr1	29281074	29281076	-	ENSMUST00000082499.1,ENSMUSG00000064433.1	Gm25586	ENSMUSG00000064433.1	ENSMUST00000082499.1	misc_RNA	chr1:29280964-29281075
chr1	29361353	29361454	-	ORR1C1	LTR	ERVL-MaLR	chr1	29361369	29361371	-	ENSMUST00000116741.1,ENSMUSG00000080391.1	Gm23785	ENSMUSG00000080391.1	ENSMUST00000116741.1	miRNA	chr1:29361275-29361370
chr1	29985741	29986237	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	29985933	29985935	+	ENSMUST00000178702.1,ENSMUSG00000096829.1	Gm23771	ENSMUSG00000096829.1	ENSMUST00000178702.1	miRNA	chr1:29985934-29986043
chr1	30333109	30338513	+	L1Md_A	LINE	L1	chr1	30333396	30333398	-	ENSMUST00000184585.1,ENSMUSG00000098883.1	Gm27430	ENSMUSG00000098883.1	ENSMUST00000184585.1	miRNA	chr1:30333291-30333397
chr1	30719865	30721314	+	RMER1A	Other	Other	chr1	30719961	30719963	-	ENSMUST00000065469.2,ENSMUSG00000053185.2	Gm9898	ENSMUSG00000053185.2	ENSMUST00000065469.2	lincRNA	chr1:30718560-30719962
chr1	30813518	30813697	+	RMER17B2	LTR	ERVK	chr1	30813534	30813536	-	ENSMUST00000187316.1,ENSMUSG00000048874.15	Phf3	ENSMUSG00000048874.15	ENSMUST00000187316.1	protein_coding	chr1:30811904-30813535
chr1	30835472	30836571	+	Lx9	LINE	L1	chr1	30836430	30836432	-	ENSMUST00000195437.1,ENSMUSG00000103783.1	Gm37522	ENSMUSG00000103783.1	ENSMUST00000195437.1	TEC	chr1:30833548-30836431
chr1	32213139	32213239	-	U6	snRNA	snRNA	chr1	32213238	32213240	-	ENSMUST00000082754.1,ENSMUSG00000064688.1	Gm25814	ENSMUSG00000064688.1	ENSMUST00000082754.1	snRNA	chr1:32213133-32213239
chr1	32314791	32315188	+	MTB	LTR	ERVL-MaLR	chr1	32315014	32315016	+	ENSMUST00000186984.1,ENSMUSG00000026058.11	Khdrbs2	ENSMUSG00000026058.11	ENSMUST00000186984.1	protein_coding	chr1:32315015-32414934
chr1	32485113	32485507	+	MTA_Mm	LTR	ERVL-MaLR	chr1	32485314	32485316	+	ENSMUST00000192993.1,ENSMUSG00000104498.1	Gm37110	ENSMUSG00000104498.1	ENSMUST00000192993.1	TEC	chr1:32485315-32486942
chr1	32568180	32569141	-	MLTR25A	LTR	ERVK	chr1	32568420	32568422	-	ENSMUST00000158864.1,ENSMUSG00000089489.1	Gm24732	ENSMUSG00000089489.1	ENSMUST00000158864.1	snRNA	chr1:32568359-32568421
chr1	32710023	32711120	-	L1_Mus4	LINE	L1	chr1	32710178	32710180	+	ENSMUST00000195241.1,ENSMUSG00000104433.1	Gm37426	ENSMUSG00000104433.1	ENSMUST00000195241.1	TEC	chr1:32710179-32712648
chr1	32726638	32726858	+	7SK	RNA	RNA	chr1	32726638	32726640	+	ENSMUST00000158770.1,ENSMUSG00000089395.1	Gm23024	ENSMUSG00000089395.1	ENSMUST00000158770.1	misc_RNA	chr1:32726639-32726930
chr1	32971840	32973233	-	RMER1A	Other	Other	chr1	32972489	32972491	-	ENSMUST00000194631.1,ENSMUSG00000102926.1	Gm37151	ENSMUSG00000102926.1	ENSMUST00000194631.1	TEC	chr1:32967484-32972490
chr1	33065060	33066157	-	MTA_Mm-int	LTR	ERVL-MaLR	chr1	33065129	33065131	+	ENSMUST00000195240.1,ENSMUSG00000102917.1	Gm37724	ENSMUSG00000102917.1	ENSMUST00000195240.1	lincRNA	chr1:33065130-33066350
chr1	33191993	33192087	+	U6	snRNA	snRNA	chr1	33191992	33191994	+	ENSMUST00000158125.1,ENSMUSG00000088750.1	Gm24901	ENSMUSG00000088750.1	ENSMUST00000158125.1	snRNA	chr1:33191993-33192102
chr1	33293675	33293753	+	U6	snRNA	snRNA	chr1	33293675	33293677	+	ENSMUST00000083289.1,ENSMUSG00000065223.1	Gm25792	ENSMUSG00000065223.1	ENSMUST00000083289.1	snRNA	chr1:33293676-33293775
chr1	33422732	33422838	+	U6	snRNA	snRNA	chr1	33422732	33422734	+	ENSMUST00000083326.1,ENSMUSG00000065260.1	Gm23453	ENSMUSG00000065260.1	ENSMUST00000083326.1	snRNA	chr1:33422733-33422838
chr1	33622012	33622256	+	MTD	LTR	ERVL-MaLR	chr1	33622141	33622143	-	ENSMUST00000189552.1,ENSMUSG00000026134.11	Prim2	ENSMUSG00000026134.11	ENSMUST00000189552.1	protein_coding	chr1:33478942-33622142
chr1	33736507	33736703	+	C-rich	Low_complexity	Low_complexity	chr1	33736656	33736658	+	ENSMUST00000122822.1,ENSMUSG00000004768.14	Rab23	ENSMUSG00000004768.14	ENSMUST00000122822.1	protein_coding	chr1:33736657-33739370
chr1	33737949	33738140	-	B2_Mm1t	SINE	B2	chr1	33738136	33738138	+	ENSMUST00000132066.3,ENSMUSG00000004768.14	Rab23	ENSMUSG00000004768.14	ENSMUST00000132066.3	protein_coding	chr1:33738137-33740772
chr1	33814382	33814424	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	33814384	33814386	-	ENSMUST00000139143.7,ENSMUSG00000042197.13	Zfp451	ENSMUSG00000042197.13	ENSMUST00000139143.7	protein_coding	chr1:33761545-33814385
chr1	33883803	33883967	+	B2_Mm2	SINE	B2	chr1	33883841	33883843	-	ENSMUST00000126724.7,ENSMUSG00000042182.16	Bend6	ENSMUSG00000042182.16	ENSMUST00000126724.7	protein_coding	chr1:33863156-33883842
chr1	33891023	33891230	-	B3	SINE	B2	chr1	33891116	33891118	-	ENSMUST00000195730.1,ENSMUSG00000104416.1	Gm37067	ENSMUSG00000104416.1	ENSMUST00000195730.1	TEC	chr1:33889490-33891117
chr1	33907775	33907899	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	33907790	33907792	-	ENSMUST00000129464.7,ENSMUSG00000042182.16	Bend6	ENSMUSG00000042182.16	ENSMUST00000129464.7	protein_coding	chr1:33852052-33907791
chr1	33907775	33907899	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	33907815	33907817	-	ENSMUST00000062289.10,ENSMUSG00000042182.16	Bend6	ENSMUSG00000042182.16	ENSMUST00000062289.10	protein_coding	chr1:33852052-33907816
chr1	33908127	33908265	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr1	33908224	33908226	+	ENSMUST00000183034.4,ENSMUSG00000026131.18	Dst	ENSMUSG00000026131.18	ENSMUST00000183034.4	protein_coding	chr1:33908225-34307592
chr1	33963672	33963859	-	MTD	LTR	ERVL-MaLR	chr1	33963684	33963686	-	ENSMUST00000190740.1,ENSMUSG00000099382.1	Gm28631	ENSMUSG00000099382.1	ENSMUST00000190740.1	processed_pseudogene	chr1:33963352-33963685
chr1	33981418	33981502	-	U6	snRNA	snRNA	chr1	33981501	33981503	-	ENSMUST00000122557.1,ENSMUSG00000084506.1	Gm23792	ENSMUSG00000084506.1	ENSMUST00000122557.1	snRNA	chr1:33981410-33981502
chr1	34032060	34032153	-	B1F	SINE	Alu	chr1	34032099	34032101	+	ENSMUST00000194178.1,ENSMUSG00000103364.1	Gm38157	ENSMUSG00000103364.1	ENSMUST00000194178.1	TEC	chr1:34032100-34033797
chr1	34161306	34161953	-	Lx4A	LINE	L1	chr1	34161923	34161925	+	ENSMUST00000182335.1,ENSMUSG00000026131.18	Dst	ENSMUSG00000026131.18	ENSMUST00000182335.1	protein_coding	chr1:34161924-34165401
chr1	34270534	34270689	+	B1_Mur4	SINE	Alu	chr1	34270569	34270571	+	ENSMUST00000185736.1,ENSMUSG00000026131.18	Dst	ENSMUSG00000026131.18	ENSMUST00000185736.1	protein_coding	chr1:34270570-34272292
chr1	34350303	34351016	+	IAPEz-int	LTR	ERVK	chr1	34350774	34350776	+	ENSMUST00000195223.1,ENSMUSG00000102839.1	Gm37385	ENSMUSG00000102839.1	ENSMUST00000195223.1	TEC	chr1:34350775-34351161
chr1	34415878	34416235	-	RLTR6-int	LTR	ERV1	chr1	34415877	34415879	-	ENSMUST00000186409.1,ENSMUSG00000101462.2	Gm3052	ENSMUSG00000101462.2	ENSMUST00000186409.1	transcribed_processed_pseudogene	chr1:34415050-34415878
chr1	34417573	34418912	+	L1Md_T	LINE	L1	chr1	34417985	34417987	-	ENSMUST00000188254.2,ENSMUSG00000101462.2	Gm3052	ENSMUSG00000101462.2	ENSMUST00000188254.2	transcribed_processed_pseudogene	chr1:34415763-34417986
chr1	34470434	34470479	+	(TCCC)n	Simple_repeat	Simple_repeat	chr1	34470433	34470435	-	ENSMUST00000191357.2,ENSMUSG00000100280.2	Gm28417	ENSMUSG00000100280.2	ENSMUST00000191357.2	processed_transcript	chr1:34468834-34470434
chr1	34750547	34750635	+	GC_rich	Low_complexity	Low_complexity	chr1	34750580	34750582	+	ENSMUST00000159021.8,ENSMUSG00000037509.20	Arhgef4	ENSMUSG00000037509.20	ENSMUST00000159021.8	protein_coding	chr1:34750581-34807144
chr1	34842946	34842988	+	GC_rich	Low_complexity	Low_complexity	chr1	34842963	34842965	-	ENSMUST00000170092.7,ENSMUSG00000037503.12	Fam168b	ENSMUSG00000037503.12	ENSMUST00000170092.7	protein_coding	chr1:34817235-34842964
chr1	34842946	34842988	+	GC_rich	Low_complexity	Low_complexity	chr1	34842984	34842986	-	ENSMUST00000185469.6,ENSMUSG00000037503.12	Fam168b	ENSMUSG00000037503.12	ENSMUST00000185469.6	protein_coding	chr1:34817352-34842985
chr1	34843023	34843058	+	GC_rich	Low_complexity	Low_complexity	chr1	34843049	34843051	-	ENSMUST00000167518.7,ENSMUSG00000037503.12	Fam168b	ENSMUSG00000037503.12	ENSMUST00000167518.7	protein_coding	chr1:34813219-34843050
chr1	34843023	34843058	+	GC_rich	Low_complexity	Low_complexity	chr1	34843033	34843035	-	ENSMUST00000191307.6,ENSMUSG00000037503.12	Fam168b	ENSMUSG00000037503.12	ENSMUST00000191307.6	protein_coding	chr1:34818009-34843034
chr1	34969993	34970068	-	B1_Mm	SINE	Alu	chr1	34970064	34970066	+	ENSMUST00000191672.1,ENSMUSG00000103760.1	Gm8009	ENSMUSG00000103760.1	ENSMUST00000191672.1	processed_pseudogene	chr1:34970065-34970500
chr1	35761211	35761611	+	RMER10A	LTR	ERVL	chr1	35761601	35761603	+	ENSMUST00000082667.1,ENSMUSG00000064601.1	Gm25634	ENSMUSG00000064601.1	ENSMUST00000082667.1	snRNA	chr1:35761602-35761706
chr1	35761601	35761705	+	U6	snRNA	snRNA	chr1	35761601	35761603	+	ENSMUST00000082667.1,ENSMUSG00000064601.1	Gm25634	ENSMUSG00000064601.1	ENSMUST00000082667.1	snRNA	chr1:35761602-35761706
chr1	35985843	35986396	+	MLTR11A	LTR	ERVK	chr1	35986372	35986374	-	ENSMUST00000192572.1,ENSMUSG00000102279.1	Gm37146	ENSMUSG00000102279.1	ENSMUST00000192572.1	lincRNA	chr1:35981960-35986373
chr1	36010875	36011203	+	ORR1E	LTR	ERVL-MaLR	chr1	36011043	36011045	-	ENSMUST00000193725.1,ENSMUSG00000103708.1	Gm33222	ENSMUSG00000103708.1	ENSMUST00000193725.1	lincRNA	chr1:36002985-36011044
chr1	36010875	36011203	+	ORR1E	LTR	ERVL-MaLR	chr1	36010989	36010991	-	ENSMUST00000194823.1,ENSMUSG00000103708.1	Gm33222	ENSMUSG00000103708.1	ENSMUST00000194823.1	lincRNA	chr1:36003068-36010990
chr1	36010875	36011203	+	ORR1E	LTR	ERVL-MaLR	chr1	36011071	36011073	+	ENSMUST00000192017.1,ENSMUSG00000104201.1	4930535G08Rik	ENSMUSG00000104201.1	ENSMUST00000192017.1	lincRNA	chr1:36011072-36011894
chr1	36030991	36031112	+	MIRb	SINE	MIR	chr1	36031017	36031019	-	ENSMUST00000195698.1,ENSMUSG00000102434.1	Gm38049	ENSMUSG00000102434.1	ENSMUST00000195698.1	TEC	chr1:36029647-36031018
chr1	36150419	36150605	+	B2_Mm2	SINE	B2	chr1	36150523	36150525	-	ENSMUST00000173250.1,ENSMUSG00000037470.14	Uggt1	ENSMUSG00000037470.14	ENSMUST00000173250.1	protein_coding	chr1:36146157-36150524
chr1	36244618	36244735	+	PB1D9	SINE	Alu	chr1	36244719	36244721	-	ENSMUST00000192159.1,ENSMUSG00000037470.14	Uggt1	ENSMUSG00000037470.14	ENSMUST00000192159.1	protein_coding	chr1:36243639-36244720
chr1	36331983	36332726	+	L1MDa	LINE	L1	chr1	36332707	36332709	+	ENSMUST00000192234.1,ENSMUSG00000102762.1	4930403P22Rik	ENSMUSG00000102762.1	ENSMUST00000192234.1	lincRNA	chr1:36332708-36333420
chr1	36441844	36441874	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr1	36441871	36441873	-	ENSMUST00000134594.7,ENSMUSG00000001143.13	Lman2l	ENSMUSG00000001143.13	ENSMUST00000134594.7	protein_coding	chr1:36423186-36441872
chr1	36471532	36471719	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	36471619	36471621	+	ENSMUST00000153128.1,ENSMUSG00000037408.10	Cnnm4	ENSMUSG00000037408.10	ENSMUST00000153128.1	protein_coding	chr1:36471620-36508764
chr1	36536782	36536928	+	B1_Mus1	SINE	Alu	chr1	36536882	36536884	-	ENSMUST00000193991.2,ENSMUSG00000067653.12	Ankrd23	ENSMUSG00000067653.12	ENSMUST00000193991.2	protein_coding	chr1:36533987-36536883
chr1	36701647	36701668	+	GC_rich	Low_complexity	Low_complexity	chr1	36701650	36701652	-	ENSMUST00000159675.1,ENSMUSG00000037351.9	Actr1b	ENSMUSG00000037351.9	ENSMUST00000159675.1	protein_coding	chr1:36701213-36701651
chr1	36744715	36744859	+	B3	SINE	B2	chr1	36744791	36744793	-	ENSMUST00000193853.1,ENSMUSG00000104237.1	Gm33533	ENSMUSG00000104237.1	ENSMUST00000193853.1	lincRNA	chr1:36739048-36744792
chr1	36816522	36816600	-	ID2	SINE	ID	chr1	36816585	36816587	-	ENSMUST00000191381.1,ENSMUSG00000026116.11	Tmem131	ENSMUSG00000026116.11	ENSMUST00000191381.1	protein_coding	chr1:36800953-36816586
chr1	37005438	37005559	+	5S	rRNA	rRNA	chr1	37005438	37005440	+	ENSMUST00000177688.1,ENSMUSG00000095944.1	n-R5s210	ENSMUSG00000095944.1	ENSMUST00000177688.1	rRNA	chr1:37005439-37005557
chr1	37133258	37133338	+	(TAA)n	Simple_repeat	Simple_repeat	chr1	37133263	37133265	-	ENSMUST00000195303.1,ENSMUSG00000103603.1	Gm37020	ENSMUSG00000103603.1	ENSMUST00000195303.1	antisense	chr1:37132273-37133264
chr1	37218367	37218387	+	(GA)n	Simple_repeat	Simple_repeat	chr1	37218378	37218380	+	ENSMUST00000195272.5,ENSMUSG00000026114.14	Cnga3	ENSMUSG00000026114.14	ENSMUST00000195272.5	protein_coding	chr1:37218379-37262184
chr1	37218367	37218387	+	(GA)n	Simple_repeat	Simple_repeat	chr1	37218378	37218380	+	ENSMUST00000194195.5,ENSMUSG00000026114.14	Cnga3	ENSMUSG00000026114.14	ENSMUST00000194195.5	protein_coding	chr1:37218379-37262184
chr1	37331463	37331563	-	L1MC3	LINE	L1	chr1	37331503	37331505	-	ENSMUST00000192652.1,ENSMUSG00000102879.1	Gm37135	ENSMUSG00000102879.1	ENSMUST00000192652.1	TEC	chr1:37330971-37331504
chr1	37488976	37489032	+	RLTR20C1_MM	LTR	ERVK	chr1	37488981	37488983	-	ENSMUST00000151866.1,ENSMUSG00000087233.1	Gm43213	ENSMUSG00000087233.1	ENSMUST00000151866.1	processed_pseudogene	chr1:37487193-37488982
chr1	37536235	37536259	+	(A)n	Simple_repeat	Simple_repeat	chr1	37536234	37536236	-	ENSMUST00000042161.14,ENSMUSG00000026110.15	Mgat4a	ENSMUSG00000026110.15	ENSMUST00000042161.14	protein_coding	chr1:37439340-37536235
chr1	37536235	37536259	+	(A)n	Simple_repeat	Simple_repeat	chr1	37536250	37536252	-	ENSMUST00000195598.1,ENSMUSG00000026110.15	Mgat4a	ENSMUSG00000026110.15	ENSMUST00000195598.1	protein_coding	chr1:37533213-37536251
chr1	37540932	37541136	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	37541015	37541017	-	ENSMUST00000151952.7,ENSMUSG00000026110.15	Mgat4a	ENSMUSG00000026110.15	ENSMUST00000151952.7	protein_coding	chr1:37439340-37541016
chr1	37660021	37661295	+	L1M4c	LINE	L1	chr1	37660721	37660723	+	ENSMUST00000192005.1,ENSMUSG00000104365.1	4930470B04Rik	ENSMUSG00000104365.1	ENSMUST00000192005.1	TEC	chr1:37660722-37662647
chr1	37843380	37843859	+	MT2B1	LTR	ERVL	chr1	37843720	37843722	-	ENSMUST00000134024.1,ENSMUSG00000060771.14	Tsga10	ENSMUSG00000060771.14	ENSMUST00000134024.1	protein_coding	chr1:37840062-37843721
chr1	37866175	37866796	-	Lx7	LINE	L1	chr1	37866428	37866430	-	ENSMUST00000088072.9,ENSMUSG00000060771.14	Tsga10	ENSMUSG00000060771.14	ENSMUST00000088072.9	protein_coding	chr1:37760823-37866429
chr1	37879938	37880321	+	MT2B1	LTR	ERVL	chr1	37880117	37880119	-	ENSMUST00000131754.1,ENSMUSG00000026088.15	Mitd1	ENSMUSG00000026088.15	ENSMUST00000131754.1	protein_coding	chr1:37878890-37880118
chr1	37892921	37892967	-	PB1D9	SINE	Alu	chr1	37892932	37892934	+	ENSMUST00000194857.5,ENSMUSG00000026087.11	Mrpl30	ENSMUSG00000026087.11	ENSMUST00000194857.5	protein_coding	chr1:37892933-37898165
chr1	37897181	37897383	-	B3	SINE	B2	chr1	37897255	37897257	+	ENSMUST00000162513.1,ENSMUSG00000026087.11	Mrpl30	ENSMUSG00000026087.11	ENSMUST00000162513.1	protein_coding	chr1:37897256-37898125
chr1	37933571	37933631	+	RMER17A2	LTR	ERVK	chr1	37933595	37933597	+	ENSMUST00000129513.1,ENSMUSG00000087374.1	Gm15457	ENSMUSG00000087374.1	ENSMUST00000129513.1	antisense	chr1:37933596-37954136
chr1	37973937	37974203	+	7SK	RNA	RNA	chr1	37973966	37973968	+	ENSMUST00000158516.1,ENSMUSG00000089141.1	Gm23409	ENSMUSG00000089141.1	ENSMUST00000158516.1	misc_RNA	chr1:37973967-37974203
chr1	38129753	38129844	+	GC_rich	Low_complexity	Low_complexity	chr1	38129800	38129802	-	ENSMUST00000195383.1,ENSMUSG00000026082.11	Rev1	ENSMUSG00000026082.11	ENSMUST00000195383.1	protein_coding	chr1:38107683-38129801
chr1	38235319	38235499	-	MER45C	DNA	hAT-Tip100	chr1	38235419	38235421	+	ENSMUST00000127620.1,ENSMUSG00000085391.1	Gm16150	ENSMUSG00000085391.1	ENSMUST00000127620.1	antisense	chr1:38235420-38245603
chr1	38627156	38627224	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	38627184	38627186	-	ENSMUST00000095027.8,ENSMUSG00000037138.17	Aff3	ENSMUSG00000037138.17	ENSMUST00000095027.8	protein_coding	chr1:38177326-38627185
chr1	38627156	38627224	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	38627200	38627202	-	ENSMUST00000212668.1,ENSMUSG00000037138.17	Aff3	ENSMUSG00000037138.17	ENSMUST00000212668.1	protein_coding	chr1:38535613-38627201
chr1	38992274	38992731	-	L2a	LINE	L2	chr1	38992677	38992679	+	ENSMUST00000194994.1,ENSMUSG00000103046.1	Gm37309	ENSMUSG00000103046.1	ENSMUST00000194994.1	TEC	chr1:38992678-38994316
chr1	39082845	39083576	+	MMERVK10C-int	LTR	ERVK	chr1	39083337	39083339	-	ENSMUST00000195455.1,ENSMUSG00000103182.1	Gm37091	ENSMUSG00000103182.1	ENSMUST00000195455.1	TEC	chr1:39081252-39083338
chr1	39193659	39193732	+	(GGA)n	Simple_repeat	Simple_repeat	chr1	39193730	39193732	+	ENSMUST00000173050.7,ENSMUSG00000026077.15	Npas2	ENSMUSG00000026077.15	ENSMUST00000173050.7	protein_coding	chr1:39193731-39287615
chr1	39341308	39341685	+	MTC	LTR	ERVL-MaLR	chr1	39341554	39341556	+	ENSMUST00000172825.1,ENSMUSG00000026077.15	Npas2	ENSMUSG00000026077.15	ENSMUST00000172825.1	protein_coding	chr1:39341555-39345466
chr1	39392615	39392768	+	L1MB3	LINE	L1	chr1	39392630	39392632	-	ENSMUST00000195854.1,ENSMUSG00000003134.10	Tbc1d8	ENSMUSG00000003134.10	ENSMUST00000195854.1	protein_coding	chr1:39391198-39392631
chr1	39519532	39519746	+	U3	snRNA	snRNA	chr1	39519532	39519534	+	ENSMUST00000083695.2,ENSMUSG00000065629.2	Gm24826	ENSMUSG00000065629.2	ENSMUST00000083695.2	snoRNA	chr1:39519533-39519747
chr1	39519532	39519746	+	U3	snRNA	snRNA	chr1	39519532	39519534	+	ENSMUST00000197298.1,ENSMUSG00000104827.1	Gm24826	ENSMUSG00000104827.1	ENSMUST00000197298.1	snoRNA	chr1:39519533-39519748
chr1	39558747	39558880	-	B1F2	SINE	Alu	chr1	39558756	39558758	-	ENSMUST00000153381.1,ENSMUSG00000048234.13	Rnf149	ENSMUSG00000048234.13	ENSMUST00000153381.1	protein_coding	chr1:39555605-39558757
chr1	39651465	39651515	+	(T)n	Simple_repeat	Simple_repeat	chr1	39651473	39651475	-	ENSMUST00000053355.5,ENSMUSG00000050967.5	Creg2	ENSMUSG00000050967.5	ENSMUST00000053355.5	protein_coding	chr1:39618406-39651474
chr1	39901121	39901173	+	GC_rich	Low_complexity	Low_complexity	chr1	39901169	39901171	+	ENSMUST00000193661.1,ENSMUSG00000026074.15	Map4k4	ENSMUSG00000026074.15	ENSMUST00000193661.1	protein_coding	chr1:39901170-39902456
chr1	39901121	39901173	+	GC_rich	Low_complexity	Low_complexity	chr1	39901169	39901171	+	ENSMUST00000191761.5,ENSMUSG00000026074.15	Map4k4	ENSMUSG00000026074.15	ENSMUST00000191761.5	protein_coding	chr1:39901170-39990278
chr1	40007326	40007460	+	LTR50	LTR	ERVL	chr1	40007392	40007394	+	ENSMUST00000192194.1,ENSMUSG00000026074.15	Map4k4	ENSMUSG00000026074.15	ENSMUST00000192194.1	protein_coding	chr1:40007393-40009329
chr1	40237959	40238201	+	MTA_Mm	LTR	ERVL-MaLR	chr1	40238019	40238021	+	ENSMUST00000191850.1,ENSMUSG00000103560.1	Gm38070	ENSMUSG00000103560.1	ENSMUST00000191850.1	TEC	chr1:40238020-40244499
chr1	40353796	40353854	-	B2_Mm2	SINE	B2	chr1	40353851	40353853	+	ENSMUST00000192199.1,ENSMUSG00000103230.1	Gm17970	ENSMUSG00000103230.1	ENSMUST00000192199.1	processed_pseudogene	chr1:40353852-40354536
chr1	40436535	40436613	+	Lx5	LINE	L1	chr1	40436588	40436590	+	ENSMUST00000173881.7,ENSMUSG00000026069.15	Il1rl1	ENSMUSG00000026069.15	ENSMUST00000173881.7	protein_coding	chr1:40436589-40441407
chr1	40771253	40771540	-	Lx8b	LINE	L1	chr1	40771384	40771386	+	ENSMUST00000195134.1,ENSMUSG00000103270.1	Gm37915	ENSMUSG00000103270.1	ENSMUST00000195134.1	antisense	chr1:40771385-40785343
chr1	41176586	41181629	+	Lx4A	LINE	L1	chr1	41181251	41181253	-	ENSMUST00000194002.1,ENSMUSG00000104072.1	4930448I06Rik	ENSMUSG00000104072.1	ENSMUST00000194002.1	lincRNA	chr1:41167587-41181252
chr1	41529543	41529887	-	ORR1C2	LTR	ERVL-MaLR	chr1	41529542	41529544	-	ENSMUST00000191087.1,ENSMUSG00000100185.1	Gm28634	ENSMUSG00000100185.1	ENSMUST00000191087.1	lincRNA	chr1:41526931-41529543
chr1	42180385	42180803	-	MT2B2	LTR	ERVL	chr1	42180387	42180389	-	ENSMUST00000191297.1,ENSMUSG00000101877.1	Gm8176	ENSMUSG00000101877.1	ENSMUST00000191297.1	processed_pseudogene	chr1:42179290-42180388
chr1	42666830	42667150	+	MLT1I	LTR	ERVL-MaLR	chr1	42666990	42666992	-	ENSMUST00000176154.2,ENSMUSG00000060424.14	Pantr1	ENSMUSG00000060424.14	ENSMUST00000176154.2	lincRNA	chr1:42648199-42666991
chr1	42666830	42667150	+	MLT1I	LTR	ERVL-MaLR	chr1	42666911	42666913	-	ENSMUST00000078844.7,ENSMUSG00000060424.14	Pantr1	ENSMUSG00000060424.14	ENSMUST00000078844.7	lincRNA	chr1:42648378-42666912
chr1	43092397	43092549	+	GC_rich	Low_complexity	Low_complexity	chr1	43092446	43092448	-	ENSMUST00000188728.1,ENSMUSG00000070939.9	Tgfbrap1	ENSMUSG00000070939.9	ENSMUST00000188728.1	protein_coding	chr1:43059891-43092447
chr1	43092397	43092549	+	GC_rich	Low_complexity	Low_complexity	chr1	43092462	43092464	-	ENSMUST00000187525.1,ENSMUSG00000070939.9	Tgfbrap1	ENSMUSG00000070939.9	ENSMUST00000187525.1	protein_coding	chr1:43074241-43092463
chr1	43270637	43270692	+	L1Md_F2	LINE	L1	chr1	43270682	43270684	+	ENSMUST00000187749.1,ENSMUSG00000099694.1	Gm29610	ENSMUSG00000099694.1	ENSMUST00000187749.1	processed_pseudogene	chr1:43270683-43271135
chr1	43445729	43445825	+	GC_rich	Low_complexity	Low_complexity	chr1	43445750	43445752	+	ENSMUST00000136648.7,ENSMUSG00000066877.11	Nck2	ENSMUSG00000066877.11	ENSMUST00000136648.7	protein_coding	chr1:43445751-43462194
chr1	43445729	43445825	+	GC_rich	Low_complexity	Low_complexity	chr1	43445750	43445752	+	ENSMUST00000086421.8,ENSMUSG00000066877.11	Nck2	ENSMUSG00000066877.11	ENSMUST00000086421.8	protein_coding	chr1:43445751-43570515
chr1	43918627	43919088	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	43918885	43918887	-	ENSMUST00000179961.1,ENSMUSG00000095757.1	Gm24180	ENSMUSG00000095757.1	ENSMUST00000179961.1	miRNA	chr1:43918777-43918886
chr1	43971175	43971498	-	Lx3_Mus	LINE	L1	chr1	43971369	43971371	+	ENSMUST00000186441.1,ENSMUSG00000041763.14	Tpp2	ENSMUSG00000041763.14	ENSMUST00000186441.1	protein_coding	chr1:43971370-43977352
chr1	44101990	44102014	+	(A)n	Simple_repeat	Simple_repeat	chr1	44102012	44102014	-	ENSMUST00000127923.7,ENSMUSG00000026049.11	Tex30	ENSMUSG00000026049.11	ENSMUST00000127923.7	protein_coding	chr1:44088017-44102013
chr1	44392024	44393516	+	MuRRS4-int	LTR	ERV1	chr1	44392808	44392810	+	ENSMUST00000190951.1,ENSMUSG00000100769.1	Gm28893	ENSMUSG00000100769.1	ENSMUST00000190951.1	processed_transcript	chr1:44392809-44394447
chr1	44559775	44560981	+	Lx	LINE	L1	chr1	44560884	44560886	+	ENSMUST00000194332.1,ENSMUSG00000102319.1	Gm37626	ENSMUSG00000102319.1	ENSMUST00000194332.1	TEC	chr1:44560885-44565447
chr1	44756929	44758024	-	MTA_Mm-int	LTR	ERVL-MaLR	chr1	44756941	44756943	+	ENSMUST00000194594.1,ENSMUSG00000103071.1	Gm38110	ENSMUSG00000103071.1	ENSMUST00000194594.1	TEC	chr1:44756942-44758492
chr1	45177873	45178076	+	L1_Mur1	LINE	L1	chr1	45178066	45178068	+	ENSMUST00000189212.1,ENSMUSG00000101937.1	Gm5268	ENSMUSG00000101937.1	ENSMUST00000189212.1	processed_pseudogene	chr1:45178067-45179006
chr1	45685455	45685562	-	U6	snRNA	snRNA	chr1	45685561	45685563	-	ENSMUST00000179545.1,ENSMUSG00000095121.1	Gm23216	ENSMUSG00000095121.1	ENSMUST00000179545.1	snRNA	chr1:45685456-45685562
chr1	45745812	45747422	-	Lx7	LINE	L1	chr1	45746894	45746896	+	ENSMUST00000083321.1,ENSMUSG00000065255.1	Gm23974	ENSMUSG00000065255.1	ENSMUST00000083321.1	snoRNA	chr1:45746895-45747025
chr1	45803681	45803758	+	B3	SINE	B2	chr1	45803685	45803687	+	ENSMUST00000146602.1,ENSMUSG00000025995.16	Wdr75	ENSMUSG00000025995.16	ENSMUST00000146602.1	protein_coding	chr1:45803686-45805447
chr1	45925560	45925590	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	45925581	45925583	-	ENSMUST00000027137.10,ENSMUSG00000025993.10	Slc40a1	ENSMUSG00000025993.10	ENSMUST00000027137.10	protein_coding	chr1:45908068-45925582
chr1	45971088	45971186	+	ORR1A4	LTR	ERVL-MaLR	chr1	45971181	45971183	+	ENSMUST00000191295.1,ENSMUSG00000099946.1	Gm9496	ENSMUSG00000099946.1	ENSMUST00000191295.1	processed_pseudogene	chr1:45971182-45976975
chr1	46056252	46056310	-	Lx8	LINE	L1	chr1	46056309	46056311	+	ENSMUST00000189861.1,ENSMUSG00000099432.1	Gm18849	ENSMUSG00000099432.1	ENSMUST00000189861.1	unprocessed_pseudogene	chr1:46056310-46058986
chr1	46065987	46066515	+	RLTR12B	LTR	ERVK	chr1	46066314	46066316	+	ENSMUST00000188209.1,ENSMUSG00000041144.10	Dnah7b	ENSMUSG00000041144.10	ENSMUST00000188209.1	protein_coding	chr1:46066315-46067380
chr1	46142722	46148842	-	L1Md_F2	LINE	L1	chr1	46144696	46144698	+	ENSMUST00000190792.1,ENSMUSG00000041144.10	Dnah7b	ENSMUSG00000041144.10	ENSMUST00000190792.1	protein_coding	chr1:46144697-46178717
chr1	46374196	46374317	+	5S	rRNA	rRNA	chr1	46374196	46374198	+	ENSMUST00000093689.1,ENSMUSG00000096047.1	n-R5s211	ENSMUSG00000096047.1	ENSMUST00000093689.1	rRNA	chr1:46374197-46374315
chr1	46640156	46640565	-	RLTR53_Mm	LTR	ERVK	chr1	46640230	46640232	+	ENSMUST00000191499.1,ENSMUSG00000101337.6	Dnah7c	ENSMUSG00000101337.6	ENSMUST00000191499.1	protein_coding	chr1:46640231-46649426
chr1	46881038	46881098	+	ID4_	SINE	ID	chr1	46881071	46881073	-	ENSMUST00000195118.1,ENSMUSG00000103129.1	Gm37393	ENSMUSG00000103129.1	ENSMUST00000195118.1	TEC	chr1:46877203-46881072
chr1	47067745	47067809	-	MER130	Unknown	Unknown	chr1	47067787	47067789	+	ENSMUST00000186233.1,ENSMUSG00000101921.1	Gm28825	ENSMUSG00000101921.1	ENSMUST00000186233.1	processed_pseudogene	chr1:47067788-47068025
chr1	47153136	47153630	+	MT2_Mm	LTR	ERVL	chr1	47153460	47153462	+	ENSMUST00000190006.1,ENSMUSG00000101447.1	Gm28826	ENSMUSG00000101447.1	ENSMUST00000190006.1	lincRNA	chr1:47153461-47189071
chr1	47749165	47749652	-	MT2_Mm	LTR	ERVL	chr1	47749398	47749400	-	ENSMUST00000178780.1,ENSMUSG00000094968.1	Gm22419	ENSMUSG00000094968.1	ENSMUST00000178780.1	miRNA	chr1:47749279-47749399
chr1	47751325	47751569	-	7SK	RNA	RNA	chr1	47751567	47751569	-	ENSMUST00000157392.1,ENSMUSG00000088017.1	Gm23829	ENSMUSG00000088017.1	ENSMUST00000157392.1	misc_RNA	chr1:47751299-47751568
chr1	48462292	48466468	+	L1_Mm	LINE	L1	chr1	48462292	48462294	-	ENSMUST00000083009.1,ENSMUSG00000064943.1	Gm23240	ENSMUSG00000064943.1	ENSMUST00000083009.1	snRNA	chr1:48462173-48462293
chr1	49095344	49095529	+	L1M2	LINE	L1	chr1	49095443	49095445	+	ENSMUST00000175049.1,ENSMUSG00000092790.1	Gm22693	ENSMUSG00000092790.1	ENSMUST00000175049.1	miRNA	chr1:49095444-49095885
chr1	49579503	49579786	-	ORR1B1-int	LTR	ERVL-MaLR	chr1	49579585	49579587	-	ENSMUST00000186262.1,ENSMUSG00000099882.1	Gm28388	ENSMUSG00000099882.1	ENSMUST00000186262.1	processed_pseudogene	chr1:49579150-49579586
chr1	50107261	50107523	-	RLTR10B	LTR	ERVK	chr1	50107469	50107471	+	ENSMUST00000186016.1,ENSMUSG00000099608.1	4933411E06Rik	ENSMUSG00000099608.1	ENSMUST00000186016.1	lincRNA	chr1:50107470-50108962
chr1	50559483	50559769	-	Lx3B	LINE	L1	chr1	50559761	50559763	+	ENSMUST00000122582.1,ENSMUSG00000084531.1	Gm25843	ENSMUSG00000084531.1	ENSMUST00000122582.1	misc_RNA	chr1:50559762-50560075
chr1	50815155	50816145	+	IAP1-MM_I-int	LTR	ERVK	chr1	50815374	50815376	+	ENSMUST00000187677.1,ENSMUSG00000100816.1	Gm28321	ENSMUSG00000100816.1	ENSMUST00000187677.1	lincRNA	chr1:50815375-50817701
chr1	50900388	50900734	+	RLTR10D2	LTR	ERVK	chr1	50900646	50900648	+	ENSMUST00000186103.6,ENSMUSG00000026109.14	Tmeff2	ENSMUSG00000026109.14	ENSMUST00000186103.6	protein_coding	chr1:50900647-50913925
chr1	50900388	50900734	+	RLTR10D2	LTR	ERVK	chr1	50900646	50900648	+	ENSMUST00000139157.7,ENSMUSG00000026109.14	Tmeff2	ENSMUSG00000026109.14	ENSMUST00000139157.7	protein_coding	chr1:50900647-50915430
chr1	50904258	50904593	+	RMER17C2	LTR	ERVK	chr1	50904443	50904445	+	ENSMUST00000185627.1,ENSMUSG00000100671.1	Gm28322	ENSMUSG00000100671.1	ENSMUST00000185627.1	lincRNA	chr1:50904444-50905918
chr1	50909274	50910239	+	MusHAL1	LINE	L1	chr1	50909961	50909963	+	ENSMUST00000114565.7,ENSMUSG00000026109.14	Tmeff2	ENSMUSG00000026109.14	ENSMUST00000114565.7	protein_coding	chr1:50909962-50979920
chr1	51015245	51015639	+	MTA_Mm	LTR	ERVL-MaLR	chr1	51015312	51015314	+	ENSMUST00000175165.1,ENSMUSG00000092906.1	Gm25736	ENSMUSG00000092906.1	ENSMUST00000175165.1	miRNA	chr1:51015313-51015413
chr1	51458845	51459099	+	RLTR51A_Mm	LTR	ERVK?	chr1	51458930	51458932	-	ENSMUST00000189460.1,ENSMUSG00000101702.1	1700072G22Rik	ENSMUSG00000101702.1	ENSMUST00000189460.1	lincRNA	chr1:51457932-51458931
chr1	51849019	51849161	+	Charlie7a	DNA	hAT-Charlie	chr1	51849117	51849119	-	ENSMUST00000186428.1,ENSMUSG00000101724.1	Gm29453	ENSMUSG00000101724.1	ENSMUST00000186428.1	sense_intronic	chr1:51847840-51849118
chr1	51850907	51851238	-	MTA_Mm	LTR	ERVL-MaLR	chr1	51851105	51851107	-	ENSMUST00000123299.1,ENSMUSG00000018417.14	Myo1b	ENSMUSG00000018417.14	ENSMUST00000123299.1	protein_coding	chr1:51834464-51851106
chr1	52077046	52077308	+	L1MA8	LINE	L1	chr1	52077260	52077262	+	ENSMUST00000185516.1,ENSMUSG00000101628.1	Gm28177	ENSMUSG00000101628.1	ENSMUST00000185516.1	processed_transcript	chr1:52077261-52156087
chr1	52091065	52091551	-	L1_Mus1	LINE	L1	chr1	52091065	52091067	-	ENSMUST00000105087.1,ENSMUSG00000078291.1	Gm3940	ENSMUSG00000078291.1	ENSMUST00000105087.1	processed_pseudogene	chr1:52090635-52091066
chr1	52197249	52197386	-	B1_Mm	SINE	Alu	chr1	52197373	52197375	-	ENSMUST00000123324.7,ENSMUSG00000026103.14	Gls	ENSMUSG00000026103.14	ENSMUST00000123324.7	protein_coding	chr1:52189468-52197374
chr1	52232778	52232820	+	GC_rich	Low_complexity	Low_complexity	chr1	52232810	52232812	-	ENSMUST00000142976.1,ENSMUSG00000026103.14	Gls	ENSMUSG00000026103.14	ENSMUST00000142976.1	protein_coding	chr1:52214518-52232811
chr1	52444435	52444544	-	U6	snRNA	snRNA	chr1	52444543	52444545	-	ENSMUST00000083258.1,ENSMUSG00000065192.1	Gm23460	ENSMUSG00000065192.1	ENSMUST00000083258.1	snRNA	chr1:52444436-52444544
chr1	52500259	52500414	+	GC_rich	Low_complexity	Low_complexity	chr1	52500299	52500301	-	ENSMUST00000186764.6,ENSMUSG00000002881.14	Nab1	ENSMUSG00000002881.14	ENSMUST00000186764.6	protein_coding	chr1:52457294-52500300
chr1	52500259	52500414	+	GC_rich	Low_complexity	Low_complexity	chr1	52500314	52500316	-	ENSMUST00000168082.1,ENSMUSG00000002881.14	Nab1	ENSMUSG00000002881.14	ENSMUST00000168082.1	protein_coding	chr1:52490310-52500315
chr1	52579831	52580399	-	MLTR31A_MM	LTR	ERVK	chr1	52580290	52580292	-	ENSMUST00000188544.1,ENSMUSG00000099878.1	Gm28178	ENSMUSG00000099878.1	ENSMUST00000188544.1	lincRNA	chr1:52570014-52580291
chr1	52655581	52656119	+	L1Md_F2	LINE	L1	chr1	52655891	52655893	-	ENSMUST00000191873.1,ENSMUSG00000103630.1	Gm37242	ENSMUSG00000103630.1	ENSMUST00000191873.1	TEC	chr1:52653808-52655892
chr1	52800366	52800438	-	MT2B	LTR	ERVL	chr1	52800370	52800372	-	ENSMUST00000159725.1,ENSMUSG00000026102.9	Inpp1	ENSMUSG00000026102.9	ENSMUST00000159725.1	protein_coding	chr1:52797066-52800371
chr1	52844899	52844929	+	GC_rich	Low_complexity	Low_complexity	chr1	52844928	52844930	+	ENSMUST00000186922.1,ENSMUSG00000041426.12	Hibch	ENSMUSG00000041426.12	ENSMUST00000186922.1	protein_coding	chr1:52844929-52848693
chr1	52992322	52992677	+	L1Md_F2	LINE	L1	chr1	52992654	52992656	-	ENSMUST00000190831.6,ENSMUSG00000043629.12	1700019D03Rik	ENSMUSG00000043629.12	ENSMUST00000190831.6	protein_coding	chr1:52925187-52992655
chr1	52992322	52992677	+	L1Md_F2	LINE	L1	chr1	52992655	52992657	-	ENSMUST00000190726.1,ENSMUSG00000043629.12	1700019D03Rik	ENSMUSG00000043629.12	ENSMUST00000190726.1	protein_coding	chr1:52925198-52992656
chr1	53099518	53100058	+	Lx5c	LINE	L1	chr1	53100049	53100051	+	ENSMUST00000158709.1,ENSMUSG00000089334.1	Gm24349	ENSMUSG00000089334.1	ENSMUST00000158709.1	snoRNA	chr1:53100050-53100150
chr1	53351207	53351356	+	B1_Mus1	SINE	Alu	chr1	53351274	53351276	-	ENSMUST00000154402.2,ENSMUSG00000026095.15	Asnsd1	ENSMUSG00000026095.15	ENSMUST00000154402.2	protein_coding	chr1:53348238-53351275
chr1	53352569	53352592	+	GC_rich	Low_complexity	Low_complexity	chr1	53352569	53352571	-	ENSMUST00000136468.1,ENSMUSG00000026095.15	Asnsd1	ENSMUSG00000026095.15	ENSMUST00000136468.1	protein_coding	chr1:53350317-53352570
chr1	53443267	53443410	+	B1_Mus1	SINE	Alu	chr1	53443394	53443396	-	ENSMUST00000174916.1,ENSMUSG00000092657.1	Gm25240	ENSMUSG00000092657.1	ENSMUST00000174916.1	miRNA	chr1:53443271-53443395
chr1	53790471	53791383	-	L1_Mus2	LINE	L1	chr1	53791200	53791202	+	ENSMUST00000194911.1,ENSMUSG00000102405.1	Gm37863	ENSMUSG00000102405.1	ENSMUST00000194911.1	TEC	chr1:53791201-53792657
chr1	53886821	53886941	-	U1	snRNA	snRNA	chr1	53886940	53886942	-	ENSMUST00000157324.1,ENSMUSG00000087949.1	Gm24251	ENSMUSG00000087949.1	ENSMUST00000157324.1	snRNA	chr1:53886828-53886941
chr1	54155045	54155104	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr1	54155095	54155097	-	ENSMUST00000192858.1,ENSMUSG00000102868.1	Gm37633	ENSMUSG00000102868.1	ENSMUST00000192858.1	TEC	chr1:54152397-54155096
chr1	54249101	54249208	-	U6	snRNA	snRNA	chr1	54249207	54249209	-	ENSMUST00000178275.1,ENSMUSG00000094013.1	Gm25829	ENSMUSG00000094013.1	ENSMUST00000178275.1	snRNA	chr1:54249102-54249208
chr1	54456252	54456770	-	MLTR11B	LTR	ERVK	chr1	54456762	54456764	-	ENSMUST00000210156.1,ENSMUSG00000109809.1	Gm34066	ENSMUSG00000109809.1	ENSMUST00000210156.1	lincRNA	chr1:54443404-54456763
chr1	54566639	54566704	-	L1MC	LINE	L1	chr1	54566702	54566704	+	ENSMUST00000185933.1,ENSMUSG00000101130.1	Gm19637	ENSMUSG00000101130.1	ENSMUST00000185933.1	processed_pseudogene	chr1:54566703-54567281
chr1	54724355	54725339	-	L1Md_F2	LINE	L1	chr1	54724422	54724424	-	ENSMUST00000179398.1,ENSMUSG00000052331.14	Ankrd44	ENSMUSG00000052331.14	ENSMUST00000179398.1	protein_coding	chr1:54722568-54724423
chr1	54768619	54768965	-	ORR1A1	LTR	ERVL-MaLR	chr1	54768826	54768828	-	ENSMUST00000180189.7,ENSMUSG00000052331.14	Ankrd44	ENSMUSG00000052331.14	ENSMUST00000180189.7	protein_coding	chr1:54760569-54768827
chr1	54769148	54769486	+	ORR1B2	LTR	ERVL-MaLR	chr1	54769217	54769219	+	ENSMUST00000158620.1,ENSMUSG00000089245.1	Gm24053	ENSMUSG00000089245.1	ENSMUST00000158620.1	miRNA	chr1:54769218-54769322
chr1	54884532	54884810	-	ORR1A3	LTR	ERVL-MaLR	chr1	54884710	54884712	-	ENSMUST00000177679.1,ENSMUSG00000052331.14	Ankrd44	ENSMUSG00000052331.14	ENSMUST00000177679.1	protein_coding	chr1:54766792-54884711
chr1	54916460	54916605	-	B1_Mur1	SINE	Alu	chr1	54916593	54916595	-	ENSMUST00000193052.1,ENSMUSG00000102642.1	A130048G24Rik	ENSMUSG00000102642.1	ENSMUST00000193052.1	TEC	chr1:54913845-54916594
chr1	54992507	54992544	+	A-rich	Low_complexity	Low_complexity	chr1	54992540	54992542	-	ENSMUST00000185429.1,ENSMUSG00000025982.13	Sf3b1	ENSMUSG00000025982.13	ENSMUST00000185429.1	protein_coding	chr1:54988953-54992541
chr1	55059609	55059752	-	B1F2	SINE	Alu	chr1	55059638	55059640	+	ENSMUST00000185918.1,ENSMUSG00000025981.13	Coq10b	ENSMUSG00000025981.13	ENSMUST00000185918.1	protein_coding	chr1:55059639-55061757
chr1	55066078	55066277	-	MTEa	LTR	ERVL-MaLR	chr1	55066263	55066265	+	ENSMUST00000190239.1,ENSMUSG00000101122.1	Gm17971	ENSMUSG00000101122.1	ENSMUST00000190239.1	processed_pseudogene	chr1:55066264-55067069
chr1	55131190	55131238	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	55131230	55131232	+	ENSMUST00000159311.7,ENSMUSG00000025979.13	Mob4	ENSMUSG00000025979.13	ENSMUST00000159311.7	protein_coding	chr1:55131231-55153938
chr1	55131190	55131238	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	55131230	55131232	+	ENSMUST00000162364.7,ENSMUSG00000025979.13	Mob4	ENSMUSG00000025979.13	ENSMUST00000162364.7	protein_coding	chr1:55131231-55154899
chr1	55226778	55226973	-	IMPB_01	Satellite	Satellite	chr1	55226781	55226783	-	ENSMUST00000027121.14,ENSMUSG00000025978.14	Rftn2	ENSMUSG00000025978.14	ENSMUST00000027121.14	protein_coding	chr1:55170159-55226782
chr1	55226778	55226973	-	IMPB_01	Satellite	Satellite	chr1	55226781	55226783	-	ENSMUST00000132055.7,ENSMUSG00000025978.14	Rftn2	ENSMUSG00000025978.14	ENSMUST00000132055.7	protein_coding	chr1:55171748-55226782
chr1	55226778	55226973	-	IMPB_01	Satellite	Satellite	chr1	55226781	55226783	-	ENSMUST00000114428.2,ENSMUSG00000025978.14	Rftn2	ENSMUSG00000025978.14	ENSMUST00000114428.2	protein_coding	chr1:55201651-55226782
chr1	55226778	55226973	-	IMPB_01	Satellite	Satellite	chr1	55226781	55226783	-	ENSMUST00000141107.1,ENSMUSG00000025978.14	Rftn2	ENSMUSG00000025978.14	ENSMUST00000141107.1	protein_coding	chr1:55223942-55226782
chr1	55363414	55363585	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	55363468	55363470	-	ENSMUST00000159398.1,ENSMUSG00000025977.15	Boll	ENSMUSG00000025977.15	ENSMUST00000159398.1	protein_coding	chr1:55346257-55363469
chr1	56971327	56971438	+	G-rich	Low_complexity	Low_complexity	chr1	56971411	56971413	+	ENSMUST00000135238.3,ENSMUSG00000087022.4	9130024F11Rik	ENSMUSG00000087022.4	ENSMUST00000135238.3	processed_transcript	chr1:56971412-56975197
chr1	56972502	56972548	+	C-rich	Low_complexity	Low_complexity	chr1	56972501	56972503	-	ENSMUST00000042857.13,ENSMUSG00000038331.15	Satb2	ENSMUSG00000038331.15	ENSMUST00000042857.13	protein_coding	chr1:56793981-56972502
chr1	56999041	56999529	-	MT2_Mm	LTR	ERVL	chr1	56999274	56999276	-	ENSMUST00000179712.1,ENSMUSG00000094128.1	Gm23943	ENSMUSG00000094128.1	ENSMUST00000179712.1	miRNA	chr1:56999155-56999275
chr1	57467864	57468027	+	U1	snRNA	snRNA	chr1	57467869	57467871	+	ENSMUST00000157728.1,ENSMUSG00000088353.1	Gm24014	ENSMUSG00000088353.1	ENSMUST00000157728.1	snRNA	chr1:57467870-57468026
chr1	57523323	57523651	+	IAPEY2_LTR	LTR	ERVK	chr1	57523641	57523643	-	ENSMUST00000194005.1,ENSMUSG00000102685.1	Gm37373	ENSMUSG00000102685.1	ENSMUST00000194005.1	TEC	chr1:57520831-57523642
chr1	58022193	58022751	-	RMER15	LTR	ERVL	chr1	58022715	58022717	+	ENSMUST00000190746.1,ENSMUSG00000026039.9	Sgo2a	ENSMUSG00000026039.9	ENSMUST00000190746.1	protein_coding	chr1:58022716-58025898
chr1	58315345	58315697	+	MTC	LTR	ERVL-MaLR	chr1	58315655	58315657	-	ENSMUST00000161126.1,ENSMUSG00000089822.1	Gm15759	ENSMUSG00000089822.1	ENSMUST00000161126.1	antisense	chr1:58254117-58315656
chr1	58386013	58386159	-	B1_Mm	SINE	Alu	chr1	58386133	58386135	-	ENSMUST00000194925.1,ENSMUSG00000103839.1	Gm37607	ENSMUSG00000103839.1	ENSMUST00000194925.1	TEC	chr1:58383512-58386134
chr1	58417424	58417571	+	B1_Mus1	SINE	Alu	chr1	58417425	58417427	-	ENSMUST00000131051.1,ENSMUSG00000026034.17	Clk1	ENSMUSG00000026034.17	ENSMUST00000131051.1	protein_coding	chr1:58416910-58417426
chr1	58432162	58432340	+	ORR1F	LTR	ERVL-MaLR	chr1	58432184	58432186	-	ENSMUST00000186242.1,ENSMUSG00000026035.15	Ppil3	ENSMUSG00000026035.15	ENSMUST00000186242.1	protein_coding	chr1:58431020-58432185
chr1	58448927	58449286	-	MTD	LTR	ERVL-MaLR	chr1	58449166	58449168	+	ENSMUST00000140723.1,ENSMUSG00000026036.17	Nif3l1	ENSMUSG00000026036.17	ENSMUST00000140723.1	protein_coding	chr1:58449167-58457800
chr1	58453189	58453581	-	MTB_Mm	LTR	ERVL-MaLR	chr1	58453403	58453405	+	ENSMUST00000185578.1,ENSMUSG00000026036.17	Nif3l1	ENSMUSG00000026036.17	ENSMUST00000185578.1	protein_coding	chr1:58453404-58456188
chr1	58466514	58466621	-	U6	snRNA	snRNA	chr1	58466620	58466622	-	ENSMUST00000179823.1,ENSMUSG00000094245.1	Gm23966	ENSMUSG00000094245.1	ENSMUST00000179823.1	snRNA	chr1:58466515-58466621
chr1	58730348	58730743	+	MTA_Mm	LTR	ERVL-MaLR	chr1	58730551	58730553	+	ENSMUST00000123032.1,ENSMUSG00000026031.15	Cflar	ENSMUSG00000026031.15	ENSMUST00000123032.1	protein_coding	chr1:58730552-58752453
chr1	58784350	58785212	+	L1_Mus4	LINE	L1	chr1	58785208	58785210	+	ENSMUST00000191399.1,ENSMUSG00000100236.1	Gm3841	ENSMUSG00000100236.1	ENSMUST00000191399.1	processed_pseudogene	chr1:58785209-58785659
chr1	58907176	58907214	+	(TTA)n	Simple_repeat	Simple_repeat	chr1	58907211	58907213	-	ENSMUST00000172685.1,ENSMUSG00000026028.12	Trak2	ENSMUSG00000026028.12	ENSMUST00000172685.1	protein_coding	chr1:58903672-58907212
chr1	59119778	59119811	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	59119805	59119807	-	ENSMUST00000087475.10,ENSMUSG00000038079.14	Tmem237	ENSMUSG00000038079.14	ENSMUST00000087475.10	protein_coding	chr1:59100597-59119806
chr1	59150580	59150684	-	YREP_Mm	Unknown	Unknown	chr1	59150633	59150635	-	ENSMUST00000189743.6,ENSMUSG00000079550.9	Mpp4	ENSMUSG00000079550.9	ENSMUST00000189743.6	protein_coding	chr1:59139160-59150634
chr1	59150598	59150734	+	B1F	SINE	Alu	chr1	59150633	59150635	-	ENSMUST00000189743.6,ENSMUSG00000079550.9	Mpp4	ENSMUSG00000079550.9	ENSMUST00000189743.6	protein_coding	chr1:59139160-59150634
chr1	59151016	59151210	-	L2	LINE	L2	chr1	59151046	59151048	+	ENSMUST00000190598.1,ENSMUSG00000101586.1	Gm29017	ENSMUSG00000101586.1	ENSMUST00000190598.1	antisense	chr1:59151047-59169320
chr1	59152322	59153127	+	RLTR13D3A1	LTR	ERVK	chr1	59152346	59152348	-	ENSMUST00000189884.6,ENSMUSG00000079550.9	Mpp4	ENSMUSG00000079550.9	ENSMUST00000189884.6	protein_coding	chr1:59139158-59152347
chr1	59219038	59219399	-	L1MA5	LINE	L1	chr1	59219125	59219127	-	ENSMUST00000188469.1,ENSMUSG00000026024.14	Als2	ENSMUSG00000026024.14	ENSMUST00000188469.1	protein_coding	chr1:59216344-59219126
chr1	59557871	59558048	-	MLT1K	LTR	ERVL-MaLR	chr1	59558007	59558009	+	ENSMUST00000187979.1,ENSMUSG00000047361.16	Gm973	ENSMUSG00000047361.16	ENSMUST00000187979.1	protein_coding	chr1:59558008-59566636
chr1	59626579	59626722	+	7SK	RNA	RNA	chr1	59626579	59626581	+	ENSMUST00000158651.1,ENSMUSG00000089276.1	Gm24545	ENSMUSG00000089276.1	ENSMUST00000158651.1	misc_RNA	chr1:59626580-59626664
chr1	59647795	59648087	-	MYSERV6-int	LTR	ERVK	chr1	59648070	59648072	-	ENSMUST00000192922.1,ENSMUSG00000103821.1	D430013B06Rik	ENSMUSG00000103821.1	ENSMUST00000192922.1	TEC	chr1:59646200-59648071
chr1	59801104	59801389	-	B4A	SINE	B4	chr1	59801262	59801264	+	ENSMUST00000194136.1,ENSMUSG00000104052.1	Gm38125	ENSMUSG00000104052.1	ENSMUST00000194136.1	TEC	chr1:59801263-59804700
chr1	59850605	59850723	+	ID_B1	SINE	B4	chr1	59850664	59850666	+	ENSMUST00000190659.1,ENSMUSG00000067336.6	Bmpr2	ENSMUSG00000067336.6	ENSMUST00000190659.1	protein_coding	chr1:59850665-59852351
chr1	59887624	59887759	-	B1_Mur4	SINE	Alu	chr1	59887688	59887690	-	ENSMUST00000193096.1,ENSMUSG00000103131.1	Gm37977	ENSMUSG00000103131.1	ENSMUST00000193096.1	TEC	chr1:59886969-59887689
chr1	59929538	59929697	+	RSINE1	SINE	B4	chr1	59929687	59929689	+	ENSMUST00000191628.1,ENSMUSG00000103696.1	Gm37531	ENSMUSG00000103696.1	ENSMUST00000191628.1	TEC	chr1:59929688-59935102
chr1	60043063	60043177	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr1	60043086	60043088	-	ENSMUST00000027172.12,ENSMUSG00000026018.12	Ica1l	ENSMUSG00000026018.12	ENSMUST00000027172.12	protein_coding	chr1:59989068-60043087
chr1	60043063	60043177	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr1	60043121	60043123	-	ENSMUST00000191251.6,ENSMUSG00000026018.12	Ica1l	ENSMUSG00000026018.12	ENSMUST00000191251.6	protein_coding	chr1:59989075-60043122
chr1	60101153	60101319	+	(TGG)n	Simple_repeat	Simple_repeat	chr1	60101245	60101247	+	ENSMUST00000191232.1,ENSMUSG00000026017.13	Carf	ENSMUSG00000026017.13	ENSMUST00000191232.1	protein_coding	chr1:60101246-60104480
chr1	60105292	60105617	-	MER74A	LTR	ERVL	chr1	60105343	60105345	+	ENSMUST00000187978.6,ENSMUSG00000026017.13	Carf	ENSMUSG00000026017.13	ENSMUST00000187978.6	protein_coding	chr1:60105344-60153953
chr1	60139770	60139802	+	AT_rich	Low_complexity	Low_complexity	chr1	60139795	60139797	+	ENSMUST00000186779.1,ENSMUSG00000026017.13	Carf	ENSMUSG00000026017.13	ENSMUST00000186779.1	protein_coding	chr1:60139796-60142211
chr1	60265908	60266183	-	B4	SINE	B4	chr1	60266138	60266140	+	ENSMUST00000185984.1,ENSMUSG00000073664.11	Nbeal1	ENSMUSG00000073664.11	ENSMUST00000185984.1	protein_coding	chr1:60266139-60269356
chr1	60409757	60409795	+	(GGA)n	Simple_repeat	Simple_repeat	chr1	60409780	60409782	+	ENSMUST00000191493.1,ENSMUSG00000026782.15	Abi2	ENSMUSG00000026782.15	ENSMUST00000191493.1	protein_coding	chr1:60409781-60444778
chr1	60409757	60409795	+	(GGA)n	Simple_repeat	Simple_repeat	chr1	60409794	60409796	+	ENSMUST00000189082.6,ENSMUSG00000026782.15	Abi2	ENSMUSG00000026782.15	ENSMUST00000189082.6	protein_coding	chr1:60409795-60447304
chr1	60613515	60613905	-	ORR1C1	LTR	ERVL-MaLR	chr1	60613802	60613804	-	ENSMUST00000158348.1,ENSMUSG00000088973.1	Gm23762	ENSMUSG00000088973.1	ENSMUST00000158348.1	miRNA	chr1:60613698-60613803
chr1	60781661	60782210	+	Lx9	LINE	L1	chr1	60781833	60781835	-	ENSMUST00000145502.1,ENSMUSG00000086795.1	Gm11579	ENSMUSG00000086795.1	ENSMUST00000145502.1	lincRNA	chr1:60776665-60781834
chr1	61123521	61124393	-	Tigger1	DNA	TcMar-Tigger	chr1	61124003	61124005	-	ENSMUST00000118999.1,ENSMUSG00000082661.1	Gm11590	ENSMUSG00000082661.1	ENSMUST00000118999.1	processed_pseudogene	chr1:61121378-61124004
chr1	61470440	61470542	+	U6	snRNA	snRNA	chr1	61470440	61470442	+	ENSMUST00000158921.1,ENSMUSG00000089546.1	Gm25839	ENSMUSG00000089546.1	ENSMUST00000158921.1	snRNA	chr1:61470441-61470543
chr1	61654375	61654863	-	L1M2	LINE	L1	chr1	61654422	61654424	+	ENSMUST00000194820.1,ENSMUSG00000103656.1	Gm37205	ENSMUSG00000103656.1	ENSMUST00000194820.1	TEC	chr1:61654423-61657158
chr1	61676317	61677313	+	L1Md_A	LINE	L1	chr1	61677248	61677250	+	ENSMUST00000193022.1,ENSMUSG00000104402.1	Gm38012	ENSMUSG00000104402.1	ENSMUST00000193022.1	TEC	chr1:61677249-61680277
chr1	61851447	61851586	-	MLT1A	LTR	ERVL-MaLR	chr1	61851461	61851463	-	ENSMUST00000138535.7,ENSMUSG00000085842.7	Pard3bos1	ENSMUSG00000085842.7	ENSMUST00000138535.7	antisense	chr1:61767415-61851462
chr1	61851447	61851586	-	MLT1A	LTR	ERVL-MaLR	chr1	61851539	61851541	-	ENSMUST00000130699.1,ENSMUSG00000085842.7	Pard3bos1	ENSMUSG00000085842.7	ENSMUST00000130699.1	antisense	chr1:61786744-61851540
chr1	62247036	62247172	-	B1_Mm	SINE	Alu	chr1	62247152	62247154	+	ENSMUST00000195466.1,ENSMUSG00000102359.1	Gm38351	ENSMUSG00000102359.1	ENSMUST00000195466.1	TEC	chr1:62247153-62249670
chr1	62534470	62540866	-	IAPEz-int	LTR	ERVK	chr1	62535941	62535943	-	ENSMUST00000185587.1,ENSMUSG00000100750.1	Gm29084	ENSMUSG00000100750.1	ENSMUST00000185587.1	antisense	chr1:62534491-62535942
chr1	62809292	62809584	+	B4	SINE	B4	chr1	62809301	62809303	+	ENSMUST00000192219.1,ENSMUSG00000103032.1	Gm37121	ENSMUSG00000103032.1	ENSMUST00000192219.1	TEC	chr1:62809302-62811857
chr1	62832368	62832478	-	MIRc	SINE	MIR	chr1	62832369	62832371	-	ENSMUST00000189802.1,ENSMUSG00000100426.1	Gm4208	ENSMUSG00000100426.1	ENSMUST00000189802.1	lincRNA	chr1:62821355-62832370
chr1	63025090	63025754	+	MYSERV6-int	LTR	ERVK	chr1	63025741	63025743	+	ENSMUST00000199516.1,ENSMUSG00000104991.1	Gm44468	ENSMUSG00000104991.1	ENSMUST00000199516.1	miRNA	chr1:63025742-63025846
chr1	63038089	63038228	+	ORR1A4	LTR	ERVL-MaLR	chr1	63038213	63038215	+	ENSMUST00000122045.1,ENSMUSG00000081617.1	Rps13-ps7	ENSMUSG00000081617.1	ENSMUST00000122045.1	processed_pseudogene	chr1:63038214-63038581
chr1	63063437	63063609	+	B4A	SINE	B4	chr1	63063560	63063562	-	ENSMUST00000188100.1,ENSMUSG00000040865.15	Ino80d	ENSMUSG00000040865.15	ENSMUST00000188100.1	protein_coding	chr1:63060135-63063561
chr1	63114076	63114171	+	GC_rich	Low_complexity	Low_complexity	chr1	63114095	63114097	+	ENSMUST00000186786.1,ENSMUSG00000084799.7	Ino80dos	ENSMUSG00000084799.7	ENSMUST00000186786.1	lincRNA	chr1:63114096-63115331
chr1	63116996	63117139	-	B1_Mus1	SINE	Alu	chr1	63117117	63117119	+	ENSMUST00000185480.1,ENSMUSG00000101599.1	Gm20342	ENSMUSG00000101599.1	ENSMUST00000185480.1	lincRNA	chr1:63117118-63126837
chr1	63144868	63145136	+	B2_Mm2	SINE	B2	chr1	63144960	63144962	-	ENSMUST00000190095.1,ENSMUSG00000025968.16	Ndufs1	ENSMUSG00000025968.16	ENSMUST00000190095.1	protein_coding	chr1:63143596-63144961
chr1	63147654	63147790	+	B1_Mus1	SINE	Alu	chr1	63147722	63147724	-	ENSMUST00000187835.1,ENSMUSG00000025968.16	Ndufs1	ENSMUSG00000025968.16	ENSMUST00000187835.1	protein_coding	chr1:63143604-63147723
chr1	63161815	63161901	-	RLTR17B_Mm	LTR	ERVK	chr1	63161854	63161856	+	ENSMUST00000104692.2,ENSMUSG00000077884.2	Gm24557	ENSMUSG00000077884.2	ENSMUST00000104692.2	miRNA	chr1:63161855-63161943
chr1	63198012	63198156	-	B1_Mus1	SINE	Alu	chr1	63198030	63198032	+	ENSMUST00000175328.3,ENSMUSG00000094290.2	Gm27512	ENSMUSG00000094290.2	ENSMUST00000175328.3	miRNA	chr1:63198031-63198156
chr1	63290565	63290807	+	L1ME3B	LINE	L1	chr1	63290737	63290739	+	ENSMUST00000029025.8,ENSMUSG00000027520.15	Zdbf2	ENSMUSG00000027520.15	ENSMUST00000029025.8	protein_coding	chr1:63290738-63314575
chr1	63300279	63300383	-	U6	snRNA	snRNA	chr1	63300382	63300384	-	ENSMUST00000083151.2,ENSMUSG00000094214.1	Gm23448	ENSMUSG00000094214.1	ENSMUST00000083151.2	snRNA	chr1:63300280-63300383
chr1	63575487	63575590	-	U6	snRNA	snRNA	chr1	63575589	63575591	-	ENSMUST00000157198.1,ENSMUSG00000087823.1	Gm22281	ENSMUSG00000087823.1	ENSMUST00000157198.1	snRNA	chr1:63575488-63575590
chr1	64121484	64121607	+	C-rich	Low_complexity	Low_complexity	chr1	64121490	64121492	-	ENSMUST00000114086.7,ENSMUSG00000025959.13	Klf7	ENSMUSG00000025959.13	ENSMUST00000114086.7	protein_coding	chr1:64029447-64121491
chr1	64396310	64396610	+	Lx5b	LINE	L1	chr1	64396333	64396335	+	ENSMUST00000175487.1,ENSMUSG00000093228.1	Gm25748	ENSMUSG00000093228.1	ENSMUST00000175487.1	miRNA	chr1:64396334-64396403
chr1	64560839	64560973	-	B1_Mus1	SINE	Alu	chr1	64560924	64560926	+	ENSMUST00000187035.1,ENSMUSG00000025958.14	Creb1	ENSMUSG00000025958.14	ENSMUST00000187035.1	protein_coding	chr1:64560925-64562566
chr1	65016504	65016644	-	B1_Mus1	SINE	Alu	chr1	65016542	65016544	-	ENSMUST00000159896.1,ENSMUSG00000025955.13	Akr1cl	ENSMUSG00000025955.13	ENSMUST00000159896.1	protein_coding	chr1:65014470-65016543
chr1	65032680	65032754	-	MRLTR33	LTR	ERVK	chr1	65032746	65032748	-	ENSMUST00000162800.7,ENSMUSG00000025955.13	Akr1cl	ENSMUSG00000025955.13	ENSMUST00000162800.7	protein_coding	chr1:65012689-65032747
chr1	65032680	65032754	-	MRLTR33	LTR	ERVK	chr1	65032685	65032687	-	ENSMUST00000159566.1,ENSMUSG00000025955.13	Akr1cl	ENSMUSG00000025955.13	ENSMUST00000159566.1	protein_coding	chr1:65016068-65032686
chr1	65032680	65032754	-	MRLTR33	LTR	ERVK	chr1	65032731	65032733	-	ENSMUST00000161313.1,ENSMUSG00000025955.13	Akr1cl	ENSMUSG00000025955.13	ENSMUST00000161313.1	protein_coding	chr1:65027685-65032732
chr1	65032680	65032754	-	MRLTR33	LTR	ERVK	chr1	65032747	65032749	-	ENSMUST00000160283.1,ENSMUSG00000025955.13	Akr1cl	ENSMUSG00000025955.13	ENSMUST00000160283.1	protein_coding	chr1:65029527-65032748
chr1	65032749	65032862	-	RLTR49	LTR	ERVK	chr1	65032758	65032760	-	ENSMUST00000069142.11,ENSMUSG00000025955.13	Akr1cl	ENSMUSG00000025955.13	ENSMUST00000069142.11	protein_coding	chr1:65012689-65032759
chr1	65281909	65282244	+	MLT1A1	LTR	ERVL-MaLR	chr1	65282055	65282057	+	ENSMUST00000140190.7,ENSMUSG00000025946.13	Pth2r	ENSMUSG00000025946.13	ENSMUST00000140190.7	protein_coding	chr1:65282056-65345341
chr1	66175196	66175307	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	66175272	66175274	+	ENSMUST00000156636.8,ENSMUSG00000015222.17	Map2	ENSMUSG00000015222.17	ENSMUST00000156636.8	protein_coding	chr1:66175273-66380617
chr1	66436081	66436224	+	U1	snRNA	snRNA	chr1	66436081	66436083	+	ENSMUST00000083760.1,ENSMUSG00000065694.1	Gm25411	ENSMUSG00000065694.1	ENSMUST00000083760.1	snRNA	chr1:66436082-66436232
chr1	66692331	66692356	+	(A)n	Simple_repeat	Simple_repeat	chr1	66692355	66692357	-	ENSMUST00000192513.1,ENSMUSG00000103375.1	Gm37181	ENSMUSG00000103375.1	ENSMUST00000192513.1	TEC	chr1:66690630-66692356
chr1	66774813	66776209	+	L1_Rod	LINE	L1	chr1	66775510	66775512	+	ENSMUST00000195562.1,ENSMUSG00000102776.1	Gm38162	ENSMUSG00000102776.1	ENSMUST00000195562.1	TEC	chr1:66775511-66780107
chr1	66808707	66809050	+	ORR1D1	LTR	ERVL-MaLR	chr1	66808793	66808795	-	ENSMUST00000132960.1,ENSMUSG00000026004.15	Kansl1l	ENSMUSG00000026004.15	ENSMUST00000132960.1	protein_coding	chr1:66776998-66808794
chr1	66825773	66825972	+	MLT1A1	LTR	ERVL-MaLR	chr1	66825913	66825915	-	ENSMUST00000193555.1,ENSMUSG00000103553.1	Gm38218	ENSMUSG00000103553.1	ENSMUST00000193555.1	TEC	chr1:66821226-66825914
chr1	66855845	66856839	+	RLTR25B	LTR	ERVK	chr1	66856640	66856642	+	ENSMUST00000158795.2,ENSMUSG00000089420.2	Gm27934	ENSMUSG00000089420.2	ENSMUST00000158795.2	snRNA	chr1:66856641-66856703
chr1	66863172	66863342	+	G-rich	Low_complexity	Low_complexity	chr1	66863276	66863278	-	ENSMUST00000027153.5,ENSMUSG00000026003.5	Acadl	ENSMUSG00000026003.5	ENSMUST00000027153.5	protein_coding	chr1:66830839-66863277
chr1	67248976	67249381	+	MTB_Mm	LTR	ERVL-MaLR	chr1	67249199	67249201	+	ENSMUST00000140506.1,ENSMUSG00000086204.1	Gm15668	ENSMUSG00000086204.1	ENSMUST00000140506.1	lincRNA	chr1:67249200-67323609
chr1	67616944	67617075	-	B1_Mur4	SINE	Alu	chr1	67616974	67616976	+	ENSMUST00000174899.2,ENSMUSG00000095282.1	Gm22548	ENSMUSG00000095282.1	ENSMUST00000174899.2	miRNA	chr1:67616975-67617052
chr1	67616975	67617099	-	MT2B	LTR	ERVL	chr1	67616974	67616976	+	ENSMUST00000174899.2,ENSMUSG00000095282.1	Gm22548	ENSMUSG00000095282.1	ENSMUST00000174899.2	miRNA	chr1:67616975-67617052
chr1	67792463	67792531	-	MER117	DNA	hAT-Charlie	chr1	67792480	67792482	+	ENSMUST00000147834.1,ENSMUSG00000085075.1	Gm15669	ENSMUSG00000085075.1	ENSMUST00000147834.1	lincRNA	chr1:67792481-67805324
chr1	67903204	67903614	+	RMER10B	LTR	ERVL	chr1	67903229	67903231	+	ENSMUST00000192182.1,ENSMUSG00000104395.1	Gm37957	ENSMUSG00000104395.1	ENSMUST00000192182.1	TEC	chr1:67903230-67905532
chr1	67973608	67974003	+	MTA_Mm	LTR	ERVL-MaLR	chr1	67973675	67973677	+	ENSMUST00000178954.1,ENSMUSG00000096031.1	Gm23189	ENSMUSG00000096031.1	ENSMUST00000178954.1	miRNA	chr1:67973676-67973777
chr1	68024012	68024307	-	ORR1D2	LTR	ERVL-MaLR	chr1	68024242	68024244	+	ENSMUST00000124160.3,ENSMUSG00000087329.3	Gm15671	ENSMUSG00000087329.3	ENSMUST00000124160.3	lincRNA	chr1:68024243-68025763
chr1	68761642	68762210	-	Lx	LINE	L1	chr1	68761726	68761728	-	ENSMUST00000195066.1,ENSMUSG00000103809.1	Gm37061	ENSMUSG00000103809.1	ENSMUST00000195066.1	TEC	chr1:68758485-68761727
chr1	69685286	69685348	+	C-rich	Low_complexity	Low_complexity	chr1	69685299	69685301	-	ENSMUST00000190016.1,ENSMUSG00000025997.13	Ikzf2	ENSMUSG00000025997.13	ENSMUST00000190016.1	protein_coding	chr1:69577890-69685300
chr1	69685811	69685835	+	(GAAA)n	Simple_repeat	Simple_repeat	chr1	69685820	69685822	-	ENSMUST00000027146.8,ENSMUSG00000025997.13	Ikzf2	ENSMUSG00000025997.13	ENSMUST00000027146.8	protein_coding	chr1:69531214-69685821
chr1	69770853	69771000	-	B1_Mur2	SINE	Alu	chr1	69770867	69770869	+	ENSMUST00000194308.1,ENSMUSG00000103402.1	Gm37930	ENSMUSG00000103402.1	ENSMUST00000194308.1	TEC	chr1:69770868-69772753
chr1	69831513	69831856	+	IAPLTR2b	LTR	ERVK	chr1	69831739	69831741	+	ENSMUST00000161131.2,ENSMUSG00000053153.14	Spag16	ENSMUSG00000053153.14	ENSMUST00000161131.2	protein_coding	chr1:69831740-69873760
chr1	70596814	70596920	+	U6	snRNA	snRNA	chr1	70596814	70596816	+	ENSMUST00000102000.1,ENSMUSG00000075952.1	Gm23422	ENSMUSG00000075952.1	ENSMUST00000102000.1	snRNA	chr1:70596815-70596921
chr1	71846522	71846791	-	B4	SINE	B4	chr1	71846609	71846611	-	ENSMUST00000194017.1,ENSMUSG00000102689.1	Gm37217	ENSMUSG00000102689.1	ENSMUST00000194017.1	TEC	chr1:71843090-71846610
chr1	71898919	71898977	+	L1_Mus2	LINE	L1	chr1	71898934	71898936	-	ENSMUST00000189983.1,ENSMUSG00000101211.1	Gm28818	ENSMUSG00000101211.1	ENSMUST00000189983.1	lincRNA	chr1:71896742-71898935
chr1	72038679	72039019	+	ORR1B2	LTR	ERVL-MaLR	chr1	72038730	72038732	-	ENSMUST00000185689.1,ENSMUSG00000101764.1	4930556G22Rik	ENSMUSG00000101764.1	ENSMUST00000185689.1	lincRNA	chr1:71983681-72038731
chr1	72226239	72226426	+	U2	snRNA	snRNA	chr1	72226239	72226241	+	ENSMUST00000178786.1,ENSMUSG00000094655.1	Gm25360	ENSMUSG00000094655.1	ENSMUST00000178786.1	snRNA	chr1:72226240-72226430
chr1	72236945	72237132	+	U2	snRNA	snRNA	chr1	72236945	72236947	+	ENSMUST00000101806.2,ENSMUSG00000094050.1	Gm23472	ENSMUSG00000094050.1	ENSMUST00000101806.2	snRNA	chr1:72236946-72237136
chr1	72244212	72244397	+	U2	snRNA	snRNA	chr1	72244212	72244214	+	ENSMUST00000177868.1,ENSMUSG00000093956.1	Gm24497	ENSMUSG00000093956.1	ENSMUST00000177868.1	snRNA	chr1:72244213-72244403
chr1	72255007	72255194	+	U2	snRNA	snRNA	chr1	72255007	72255009	+	ENSMUST00000179876.1,ENSMUSG00000093843.1	Gm25939	ENSMUSG00000093843.1	ENSMUST00000179876.1	snRNA	chr1:72255008-72255198
chr1	72848588	72848910	-	ORR1E	LTR	ERVL-MaLR	chr1	72848698	72848700	+	ENSMUST00000155703.1,ENSMUSG00000039323.18	Igfbp2	ENSMUSG00000039323.18	ENSMUST00000155703.1	protein_coding	chr1:72848699-72852148
chr1	73398803	73399130	-	MamTip3	DNA	hAT-Tip100	chr1	73398967	73398969	+	ENSMUST00000186582.1,ENSMUSG00000101812.1	D530049I02Rik	ENSMUSG00000101812.1	ENSMUST00000186582.1	lincRNA	chr1:73398968-73430790
chr1	73525420	73525778	+	ORR1C1	LTR	ERVL-MaLR	chr1	73525626	73525628	-	ENSMUST00000188155.1,ENSMUSG00000100444.1	C530043A13Rik	ENSMUSG00000100444.1	ENSMUST00000188155.1	lincRNA	chr1:73522095-73525627
chr1	73525420	73525778	+	ORR1C1	LTR	ERVL-MaLR	chr1	73525459	73525461	-	ENSMUST00000189247.1,ENSMUSG00000100444.1	C530043A13Rik	ENSMUSG00000100444.1	ENSMUST00000189247.1	lincRNA	chr1:73522097-73525460
chr1	73528610	73529061	-	MLT1F1	LTR	ERVL-MaLR	chr1	73528936	73528938	+	ENSMUST00000189178.1,ENSMUSG00000100429.1	Gm29186	ENSMUSG00000100429.1	ENSMUST00000189178.1	lincRNA	chr1:73528937-73536349
chr1	73763708	73763794	+	5S	rRNA	rRNA	chr1	73763709	73763711	+	ENSMUST00000158041.1,ENSMUSG00000088666.1	Gm25329	ENSMUSG00000088666.1	ENSMUST00000158041.1	rRNA	chr1:73763710-73763835
chr1	73841734	73842132	-	MTC	LTR	ERVL-MaLR	chr1	73841916	73841918	-	ENSMUST00000188600.1,ENSMUSG00000101344.1	Gm29183	ENSMUSG00000101344.1	ENSMUST00000188600.1	lincRNA	chr1:73750321-73841917
chr1	73855392	73855662	+	LTR72_RN	LTR	ERV1	chr1	73855574	73855576	-	ENSMUST00000183826.1,ENSMUSG00000098504.1	Mir6351	ENSMUSG00000098504.1	ENSMUST00000183826.1	miRNA	chr1:73855477-73855575
chr1	73863782	73864702	+	RLTR19-int	LTR	ERVK	chr1	73864465	73864467	-	ENSMUST00000189514.1,ENSMUSG00000100301.6	6030407O03Rik	ENSMUSG00000100301.6	ENSMUST00000189514.1	lincRNA	chr1:73618088-73864466
chr1	73986995	73987105	+	(TC)n	Simple_repeat	Simple_repeat	chr1	73987062	73987064	-	ENSMUST00000188942.1,ENSMUSG00000055322.15	Tns1	ENSMUSG00000055322.15	ENSMUST00000188942.1	protein_coding	chr1:73980640-73987063
chr1	74091337	74091411	+	C-rich	Low_complexity	Low_complexity	chr1	74091350	74091352	-	ENSMUST00000187584.6,ENSMUSG00000055322.15	Tns1	ENSMUSG00000055322.15	ENSMUST00000187584.6	protein_coding	chr1:73910232-74091351
chr1	74124447	74124479	+	GC_rich	Low_complexity	Low_complexity	chr1	74124446	74124448	-	ENSMUST00000169786.7,ENSMUSG00000055322.15	Tns1	ENSMUSG00000055322.15	ENSMUST00000169786.7	protein_coding	chr1:73910231-74124447
chr1	74124447	74124479	+	GC_rich	Low_complexity	Low_complexity	chr1	74124448	74124450	-	ENSMUST00000191104.6,ENSMUSG00000055322.15	Tns1	ENSMUSG00000055322.15	ENSMUST00000191104.6	protein_coding	chr1:73910232-74124449
chr1	74124447	74124479	+	GC_rich	Low_complexity	Low_complexity	chr1	74124446	74124448	-	ENSMUST00000212888.1,ENSMUSG00000055322.15	Tns1	ENSMUSG00000055322.15	ENSMUST00000212888.1	protein_coding	chr1:73914530-74124447
chr1	74206561	74206645	+	ID4	SINE	ID	chr1	74206619	74206621	-	ENSMUST00000157195.1,ENSMUSG00000087820.1	Mir1928	ENSMUSG00000087820.1	ENSMUST00000157195.1	miRNA	chr1:74206554-74206620
chr1	74212812	74212909	+	U6	snRNA	snRNA	chr1	74212812	74212814	+	ENSMUST00000101821.1,ENSMUSG00000094768.1	Gm25524	ENSMUSG00000094768.1	ENSMUST00000101821.1	snRNA	chr1:74212813-74212919
chr1	74236418	74236543	+	G-rich	Low_complexity	Low_complexity	chr1	74236496	74236498	+	ENSMUST00000113820.8,ENSMUSG00000006304.14	Arpc2	ENSMUSG00000006304.14	ENSMUST00000113820.8	protein_coding	chr1:74236497-74268209
chr1	74236418	74236543	+	G-rich	Low_complexity	Low_complexity	chr1	74236516	74236518	+	ENSMUST00000006467.13,ENSMUSG00000006304.14	Arpc2	ENSMUSG00000006304.14	ENSMUST00000006467.13	protein_coding	chr1:74236517-74267987
chr1	74287848	74287878	+	AT_rich	Low_complexity	Low_complexity	chr1	74287859	74287861	-	ENSMUST00000192088.1,ENSMUSG00000103013.1	Gm37503	ENSMUSG00000103013.1	ENSMUST00000192088.1	TEC	chr1:74287542-74287860
chr1	74305427	74305757	-	ORR1A3	LTR	ERVL-MaLR	chr1	74305621	74305623	-	ENSMUST00000130763.7,ENSMUSG00000006301.17	Tmbim1	ENSMUSG00000006301.17	ENSMUST00000130763.7	protein_coding	chr1:74293910-74305622
chr1	74391719	74391823	+	C-rich	Low_complexity	Low_complexity	chr1	74391794	74391796	+	ENSMUST00000141175.1,ENSMUSG00000026176.13	Ctdsp1	ENSMUSG00000026176.13	ENSMUST00000141175.1	protein_coding	chr1:74391795-74397282
chr1	74503291	74503326	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr1	74503300	74503302	-	ENSMUST00000195478.1,ENSMUSG00000103227.1	Gm37733	ENSMUSG00000103227.1	ENSMUST00000195478.1	TEC	chr1:74500340-74503301
chr1	74586888	74587009	+	B1_Mur2	SINE	Alu	chr1	74586971	74586973	-	ENSMUST00000175414.1,ENSMUSG00000093155.1	Gm25035	ENSMUSG00000093155.1	ENSMUST00000175414.1	miRNA	chr1:74586896-74586972
chr1	74695190	74695326	+	B1F	SINE	Alu	chr1	74695212	74695214	+	ENSMUST00000128891.7,ENSMUSG00000033257.14	Ttll4	ENSMUSG00000033257.14	ENSMUST00000128891.7	protein_coding	chr1:74695213-74699878
chr1	75137828	75137962	+	B1F	SINE	Alu	chr1	75137860	75137862	-	ENSMUST00000187888.1,ENSMUSG00000033159.14	Cnppd1	ENSMUSG00000033159.14	ENSMUST00000187888.1	protein_coding	chr1:75136785-75137861
chr1	75138846	75139038	+	B2_Mm1a	SINE	B2	chr1	75138875	75138877	-	ENSMUST00000189043.1,ENSMUSG00000033159.14	Cnppd1	ENSMUSG00000033159.14	ENSMUST00000189043.1	protein_coding	chr1:75135771-75138876
chr1	75191698	75191747	+	GC_rich	Low_complexity	Low_complexity	chr1	75191724	75191726	-	ENSMUST00000188430.6,ENSMUSG00000033124.15	Atg9a	ENSMUSG00000033124.15	ENSMUST00000188430.6	protein_coding	chr1:75187557-75191725
chr1	75191698	75191747	+	GC_rich	Low_complexity	Low_complexity	chr1	75191713	75191715	-	ENSMUST00000186744.1,ENSMUSG00000033124.15	Atg9a	ENSMUSG00000033124.15	ENSMUST00000186744.1	protein_coding	chr1:75190117-75191714
chr1	75209612	75209731	+	MER5A1	DNA	hAT-Charlie	chr1	75209727	75209729	-	ENSMUST00000184844.2,ENSMUSG00000099204.2	Gm27943	ENSMUSG00000099204.2	ENSMUST00000184844.2	miRNA	chr1:75209613-75209728
chr1	75212277	75212412	-	B1_Mus1	SINE	Alu	chr1	75212398	75212400	+	ENSMUST00000186350.1,ENSMUSG00000026201.12	Stk16	ENSMUSG00000026201.12	ENSMUST00000186350.1	protein_coding	chr1:75212399-75213155
chr1	75236390	75236418	+	(CCCCCG)n	Simple_repeat	Simple_repeat	chr1	75236405	75236407	+	ENSMUST00000188931.6,ENSMUSG00000026203.16	Dnajb2	ENSMUSG00000026203.16	ENSMUST00000188931.6	protein_coding	chr1:75236406-75245688
chr1	75263846	75263907	+	(CACCT)n	Simple_repeat	Simple_repeat	chr1	75263906	75263908	-	ENSMUST00000186178.6,ENSMUSG00000026204.15	Ptprn	ENSMUSG00000026204.15	ENSMUST00000186178.6	protein_coding	chr1:75258491-75263907
chr1	75382058	75382141	+	C-rich	Low_complexity	Low_complexity	chr1	75382113	75382115	+	ENSMUST00000148515.7,ENSMUSG00000026207.16	Speg	ENSMUSG00000026207.16	ENSMUST00000148515.7	protein_coding	chr1:75382114-75388345
chr1	75382058	75382141	+	C-rich	Low_complexity	Low_complexity	chr1	75382113	75382115	+	ENSMUST00000113590.7,ENSMUSG00000026207.16	Speg	ENSMUSG00000026207.16	ENSMUST00000113590.7	protein_coding	chr1:75382114-75404563
chr1	75382058	75382141	+	C-rich	Low_complexity	Low_complexity	chr1	75382125	75382127	+	ENSMUST00000187214.1,ENSMUSG00000026207.16	Speg	ENSMUSG00000026207.16	ENSMUST00000187214.1	protein_coding	chr1:75382126-75383382
chr1	75382058	75382141	+	C-rich	Low_complexity	Low_complexity	chr1	75382137	75382139	+	ENSMUST00000125306.1,ENSMUSG00000026207.16	Speg	ENSMUSG00000026207.16	ENSMUST00000125306.1	protein_coding	chr1:75382138-75387895
chr1	75383551	75383585	+	(T)n	Simple_repeat	Simple_repeat	chr1	75383555	75383557	+	ENSMUST00000146705.1,ENSMUSG00000026207.16	Speg	ENSMUSG00000026207.16	ENSMUST00000146705.1	protein_coding	chr1:75383556-75384975
chr1	75396335	75396493	+	MIR	SINE	MIR	chr1	75396362	75396364	-	ENSMUST00000132100.1,ENSMUSG00000086053.1	Gm15178	ENSMUSG00000086053.1	ENSMUST00000132100.1	antisense	chr1:75392131-75396363
chr1	75491738	75491901	-	MIR	SINE	MIR	chr1	75491810	75491812	-	ENSMUST00000145382.1,ENSMUSG00000026211.17	Obsl1	ENSMUSG00000026211.17	ENSMUST00000145382.1	protein_coding	chr1:75490969-75491811
chr1	75528594	75528740	+	MER103C	DNA	hAT-Charlie	chr1	75528639	75528641	+	ENSMUST00000156838.7,ENSMUSG00000026213.15	Stk11ip	ENSMUSG00000026213.15	ENSMUST00000156838.7	protein_coding	chr1:75528640-75536935
chr1	76488924	76489204	+	MTC	LTR	ERVL-MaLR	chr1	76489132	76489134	+	ENSMUST00000190362.6,ENSMUSG00000100553.6	Gm17751	ENSMUSG00000100553.6	ENSMUST00000190362.6	lincRNA	chr1:76489133-76501444
chr1	76488924	76489204	+	MTC	LTR	ERVL-MaLR	chr1	76489132	76489134	+	ENSMUST00000189132.1,ENSMUSG00000100553.6	Gm17751	ENSMUSG00000100553.6	ENSMUST00000189132.1	lincRNA	chr1:76489133-76502028
chr1	77027778	77027920	+	Eulor11	DNA	DNA	chr1	77027791	77027793	-	ENSMUST00000191156.1,ENSMUSG00000100534.1	Gm816	ENSMUSG00000100534.1	ENSMUST00000191156.1	lincRNA	chr1:76890472-77027792
chr1	77146980	77147044	+	(CA)n	Simple_repeat	Simple_repeat	chr1	77146991	77146993	-	ENSMUST00000193479.1,ENSMUSG00000102904.1	Gm38265	ENSMUSG00000102904.1	ENSMUST00000193479.1	TEC	chr1:77143227-77146992
chr1	77570552	77570693	+	ORR1A1	LTR	ERVL-MaLR	chr1	77570671	77570673	+	ENSMUST00000185671.1,ENSMUSG00000101506.1	Gm28385	ENSMUSG00000101506.1	ENSMUST00000185671.1	processed_pseudogene	chr1:77570672-77570963
chr1	78466917	78466950	+	(CCA)n	Simple_repeat	Simple_repeat	chr1	78466925	78466927	-	ENSMUST00000195509.1,ENSMUSG00000104018.1	4833412K13Rik	ENSMUSG00000104018.1	ENSMUST00000195509.1	TEC	chr1:78465448-78466926
chr1	78500001	78501969	-	MMERGLN-int	LTR	ERV1	chr1	78501164	78501166	-	ENSMUST00000190853.1,ENSMUSG00000090486.2	BC035947	ENSMUSG00000090486.2	ENSMUST00000190853.1	protein_coding	chr1:78497029-78501165
chr1	78510937	78511187	+	B4	SINE	B4	chr1	78510990	78510992	+	ENSMUST00000134947.7,ENSMUSG00000012187.13	Mogat1	ENSMUSG00000012187.13	ENSMUST00000134947.7	protein_coding	chr1:78510991-78527695
chr1	78510937	78511187	+	B4	SINE	B4	chr1	78511159	78511161	+	ENSMUST00000149732.7,ENSMUSG00000012187.13	Mogat1	ENSMUSG00000012187.13	ENSMUST00000149732.7	protein_coding	chr1:78511160-78529235
chr1	78510937	78511187	+	B4	SINE	B4	chr1	78511168	78511170	+	ENSMUST00000113524.7,ENSMUSG00000012187.13	Mogat1	ENSMUSG00000012187.13	ENSMUST00000113524.7	protein_coding	chr1:78511169-78538171
chr1	78615451	78615629	-	MTE2b	LTR	ERVL-MaLR	chr1	78615466	78615468	+	ENSMUST00000186132.1,ENSMUSG00000100562.1	Gm29611	ENSMUSG00000100562.1	ENSMUST00000186132.1	lincRNA	chr1:78615467-78620165
chr1	78670820	78670922	-	PB1D9	SINE	Alu	chr1	78670892	78670894	+	ENSMUST00000135642.1,ENSMUSG00000032883.15	Acsl3	ENSMUSG00000032883.15	ENSMUST00000135642.1	protein_coding	chr1:78670893-78688282
chr1	78696633	78696786	+	RSINE1	SINE	B4	chr1	78696655	78696657	+	ENSMUST00000148608.1,ENSMUSG00000032883.15	Acsl3	ENSMUSG00000032883.15	ENSMUST00000148608.1	protein_coding	chr1:78696656-78701289
chr1	79513850	79514094	-	L1_Mur2	LINE	L1	chr1	79513863	79513865	-	ENSMUST00000104594.1,ENSMUSG00000077782.1	Gm24160	ENSMUSG00000077782.1	ENSMUST00000104594.1	snoRNA	chr1:79513739-79513864
chr1	79620743	79621641	+	Lx4B	LINE	L1	chr1	79621033	79621035	-	ENSMUST00000195349.1,ENSMUSG00000102235.1	Gm37886	ENSMUSG00000102235.1	ENSMUST00000195349.1	TEC	chr1:79619522-79621034
chr1	79762031	79762093	-	Kanga1b	DNA	TcMar-Tc2	chr1	79762046	79762048	-	ENSMUST00000125641.1,ENSMUSG00000073643.11	Wdfy1	ENSMUSG00000073643.11	ENSMUST00000125641.1	protein_coding	chr1:79733853-79762047
chr1	79762716	79762771	+	MTEa	LTR	ERVL-MaLR	chr1	79762716	79762718	+	ENSMUST00000193178.1,ENSMUSG00000104497.1	Gm10555	ENSMUSG00000104497.1	ENSMUST00000193178.1	TEC	chr1:79762717-79764507
chr1	79858676	79858724	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	79858695	79858697	-	ENSMUST00000027467.10,ENSMUSG00000026249.10	Serpine2	ENSMUSG00000026249.10	ENSMUST00000027467.10	protein_coding	chr1:79794197-79858696
chr1	79858676	79858724	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	79858695	79858697	-	ENSMUST00000153862.1,ENSMUSG00000026249.10	Serpine2	ENSMUSG00000026249.10	ENSMUST00000153862.1	protein_coding	chr1:79815108-79858696
chr1	80135465	80135572	+	U6	snRNA	snRNA	chr1	80135465	80135467	+	ENSMUST00000179111.1,ENSMUSG00000096297.1	Gm23934	ENSMUSG00000096297.1	ENSMUST00000179111.1	snRNA	chr1:80135466-80135572
chr1	80184554	80184900	+	ORR1A3	LTR	ERVL-MaLR	chr1	80184718	80184720	+	ENSMUST00000191325.1,ENSMUSG00000099552.1	9830004L10Rik	ENSMUSG00000099552.1	ENSMUST00000191325.1	lincRNA	chr1:80184719-80192028
chr1	80186736	80191612	+	RMER16-int	LTR	ERVK	chr1	80186949	80186951	+	ENSMUST00000188074.1,ENSMUSG00000099552.1	9830004L10Rik	ENSMUSG00000099552.1	ENSMUST00000188074.1	lincRNA	chr1:80186950-80192028
chr1	80186736	80191612	+	RMER16-int	LTR	ERVK	chr1	80186971	80186973	+	ENSMUST00000185548.1,ENSMUSG00000099552.1	9830004L10Rik	ENSMUSG00000099552.1	ENSMUST00000185548.1	lincRNA	chr1:80186972-80192073
chr1	80256016	80256200	+	B2_Mm1t	SINE	B2	chr1	80256196	80256198	-	ENSMUST00000192258.1,ENSMUSG00000103404.1	Gm37932	ENSMUSG00000103404.1	ENSMUST00000192258.1	TEC	chr1:80255031-80256197
chr1	80340398	80340532	+	G-rich	Low_complexity	Low_complexity	chr1	80340479	80340481	-	ENSMUST00000163119.7,ENSMUSG00000004364.14	Cul3	ENSMUSG00000004364.14	ENSMUST00000163119.7	protein_coding	chr1:80264923-80340480
chr1	80382727	80382890	-	L1MB8	LINE	L1	chr1	80382821	80382823	+	ENSMUST00000187121.1,ENSMUSG00000101722.1	Gm29125	ENSMUSG00000101722.1	ENSMUST00000187121.1	lincRNA	chr1:80382822-80386251
chr1	80506127	80506396	+	RMER15	LTR	ERVL	chr1	80506309	80506311	-	ENSMUST00000186835.1,ENSMUSG00000038608.15	Dock10	ENSMUSG00000038608.15	ENSMUST00000186835.1	protein_coding	chr1:80502891-80506310
chr1	80669506	80669814	-	L1_Mus1	LINE	L1	chr1	80669563	80669565	-	ENSMUST00000194285.1,ENSMUSG00000103192.1	Gm37645	ENSMUSG00000103192.1	ENSMUST00000194285.1	TEC	chr1:80666009-80669564
chr1	80749040	80749412	+	MTA_Mm	LTR	ERVL-MaLR	chr1	80749053	80749055	-	ENSMUST00000195842.1,ENSMUSG00000102721.1	A630081D01Rik	ENSMUSG00000102721.1	ENSMUST00000195842.1	TEC	chr1:80747222-80749054
chr1	81077116	81077261	-	IMPB_01	Satellite	Satellite	chr1	81077203	81077205	+	ENSMUST00000123720.7,ENSMUSG00000054976.14	Nyap2	ENSMUSG00000054976.14	ENSMUST00000123720.7	protein_coding	chr1:81077204-81298909
chr1	82291386	82291441	+	(TCC)n	Simple_repeat	Simple_repeat	chr1	82291415	82291417	-	ENSMUST00000069799.2,ENSMUSG00000055980.2	Irs1	ENSMUSG00000055980.2	ENSMUST00000069799.2	protein_coding	chr1:82233101-82291416
chr1	82352197	82352291	-	ORR1E	LTR	ERVL-MaLR	chr1	82352216	82352218	+	ENSMUST00000194744.1,ENSMUSG00000104493.1	Gm19552	ENSMUSG00000104493.1	ENSMUST00000194744.1	TEC	chr1:82352217-82355049
chr1	82396583	82397069	-	MT2_Mm	LTR	ERVL	chr1	82396816	82396818	-	ENSMUST00000117032.2,ENSMUSG00000096779.1	Gm22112	ENSMUSG00000096779.1	ENSMUST00000117032.2	miRNA	chr1:82396697-82396817
chr1	82402553	82403045	-	MT2_Mm	LTR	ERVL	chr1	82402745	82402747	-	ENSMUST00000187929.1,ENSMUSG00000100786.1	Gm28940	ENSMUSG00000100786.1	ENSMUST00000187929.1	antisense	chr1:82392493-82402746
chr1	82635012	82635116	+	5S	rRNA	rRNA	chr1	82635012	82635014	+	ENSMUST00000083121.1,ENSMUSG00000065055.1	n-R5s213	ENSMUSG00000065055.1	ENSMUST00000083121.1	rRNA	chr1:82635013-82635110
chr1	82748280	82748574	-	B4	SINE	B4	chr1	82748388	82748390	+	ENSMUST00000162573.2,ENSMUSG00000026150.14	Mff	ENSMUSG00000026150.14	ENSMUST00000162573.2	protein_coding	chr1:82748389-82751728
chr1	82839657	82839701	+	GC_rich	Low_complexity	Low_complexity	chr1	82839668	82839670	+	ENSMUST00000190052.6,ENSMUSG00000026159.13	Agfg1	ENSMUSG00000026159.13	ENSMUST00000190052.6	protein_coding	chr1:82839669-82896381
chr1	82839657	82839701	+	GC_rich	Low_complexity	Low_complexity	chr1	82839670	82839672	+	ENSMUST00000063380.10,ENSMUSG00000026159.13	Agfg1	ENSMUSG00000026159.13	ENSMUST00000063380.10	protein_coding	chr1:82839671-82896279
chr1	82839657	82839701	+	GC_rich	Low_complexity	Low_complexity	chr1	82839673	82839675	+	ENSMUST00000187899.6,ENSMUSG00000026159.13	Agfg1	ENSMUSG00000026159.13	ENSMUST00000187899.6	protein_coding	chr1:82839674-82895521
chr1	82839657	82839701	+	GC_rich	Low_complexity	Low_complexity	chr1	82839673	82839675	+	ENSMUST00000186302.6,ENSMUSG00000026159.13	Agfg1	ENSMUSG00000026159.13	ENSMUST00000186302.6	protein_coding	chr1:82839674-82895675
chr1	83004901	83005017	-	MTC	LTR	ERVL-MaLR	chr1	83004906	83004908	-	ENSMUST00000185805.1,ENSMUSG00000101784.1	Gm7553	ENSMUSG00000101784.1	ENSMUST00000185805.1	processed_pseudogene	chr1:83003482-83004907
chr1	83216702	83216791	-	5S	rRNA	rRNA	chr1	83216790	83216792	-	ENSMUST00000122494.1,ENSMUSG00000084443.1	n-R5s214	ENSMUSG00000084443.1	ENSMUST00000122494.1	rRNA	chr1:83216671-83216791
chr1	83795711	83796145	+	MT2_Mm	LTR	ERVL	chr1	83795911	83795913	+	ENSMUST00000178653.1,ENSMUSG00000094946.1	Gm25754	ENSMUSG00000094946.1	ENSMUST00000178653.1	miRNA	chr1:83795912-83796032
chr1	83910712	83911737	+	L1Md_F2	LINE	L1	chr1	83911570	83911572	-	ENSMUST00000189405.6,ENSMUSG00000100580.6	4933436I20Rik	ENSMUSG00000100580.6	ENSMUST00000189405.6	lincRNA	chr1:83659550-83911571
chr1	83910712	83911737	+	L1Md_F2	LINE	L1	chr1	83911643	83911645	-	ENSMUST00000190615.1,ENSMUSG00000100580.6	4933436I20Rik	ENSMUSG00000100580.6	ENSMUST00000190615.1	lincRNA	chr1:83843602-83911644
chr1	84284617	84284670	+	GC_rich	Low_complexity	Low_complexity	chr1	84284644	84284646	-	ENSMUST00000168574.8,ENSMUSG00000045658.16	Pid1	ENSMUSG00000045658.16	ENSMUST00000168574.8	protein_coding	chr1:84036296-84284645
chr1	84284617	84284670	+	GC_rich	Low_complexity	Low_complexity	chr1	84284622	84284624	-	ENSMUST00000187992.1,ENSMUSG00000045658.16	Pid1	ENSMUSG00000045658.16	ENSMUST00000187992.1	protein_coding	chr1:84283193-84284623
chr1	84335952	84336352	-	MTB	LTR	ERVL-MaLR	chr1	84336172	84336174	-	ENSMUST00000176559.7,ENSMUSG00000045658.16	Pid1	ENSMUSG00000045658.16	ENSMUST00000176559.7	protein_coding	chr1:84037231-84336173
chr1	84340551	84346950	+	L1_Mus1	LINE	L1	chr1	84341109	84341111	-	ENSMUST00000176822.1,ENSMUSG00000045658.16	Pid1	ENSMUSG00000045658.16	ENSMUST00000176822.1	protein_coding	chr1:84115332-84341110
chr1	84363950	84364372	-	MTE2a	LTR	ERVL-MaLR	chr1	84364179	84364181	-	ENSMUST00000175996.7,ENSMUSG00000045658.16	Pid1	ENSMUSG00000045658.16	ENSMUST00000175996.7	protein_coding	chr1:84107794-84364180
chr1	84669420	84669449	+	(A)n	Simple_repeat	Simple_repeat	chr1	84669442	84669444	-	ENSMUST00000195352.1,ENSMUSG00000102481.1	Gm37925	ENSMUSG00000102481.1	ENSMUST00000195352.1	TEC	chr1:84665189-84669443
chr1	84750540	84750562	+	(A)n	Simple_repeat	Simple_repeat	chr1	84750542	84750544	-	ENSMUST00000190125.1,ENSMUSG00000026219.14	Trip12	ENSMUSG00000026219.14	ENSMUST00000190125.1	protein_coding	chr1:84749158-84750543
chr1	84766626	84766808	+	B2_Mm2	SINE	B2	chr1	84766714	84766716	-	ENSMUST00000185672.1,ENSMUSG00000026219.14	Trip12	ENSMUSG00000026219.14	ENSMUST00000185672.1	protein_coding	chr1:84765951-84766715
chr1	84784217	84784356	+	B1_Mus1	SINE	Alu	chr1	84784297	84784299	-	ENSMUST00000190474.1,ENSMUSG00000026219.14	Trip12	ENSMUSG00000026219.14	ENSMUST00000190474.1	protein_coding	chr1:84782361-84784298
chr1	84824575	84824690	-	MIRb	SINE	MIR	chr1	84824682	84824684	-	ENSMUST00000192396.1,ENSMUSG00000104503.1	Gm37738	ENSMUSG00000104503.1	ENSMUST00000192396.1	TEC	chr1:84819968-84824683
chr1	85106227	85106767	+	MT2_Mm	LTR	ERVL	chr1	85106633	85106635	+	ENSMUST00000093501.9,ENSMUSG00000072109.11	A530040E14Rik	ENSMUSG00000072109.11	ENSMUST00000093501.9	antisense	chr1:85106634-85114035
chr1	85106227	85106767	+	MT2_Mm	LTR	ERVL	chr1	85106643	85106645	+	ENSMUST00000162453.7,ENSMUSG00000072109.11	A530040E14Rik	ENSMUSG00000072109.11	ENSMUST00000162453.7	antisense	chr1:85106644-85113463
chr1	85106227	85106767	+	MT2_Mm	LTR	ERVL	chr1	85106651	85106653	+	ENSMUST00000161666.7,ENSMUSG00000072109.11	A530040E14Rik	ENSMUSG00000072109.11	ENSMUST00000161666.7	antisense	chr1:85106652-85113583
chr1	85106227	85106767	+	MT2_Mm	LTR	ERVL	chr1	85106653	85106655	+	ENSMUST00000159087.7,ENSMUSG00000072109.11	A530040E14Rik	ENSMUSG00000072109.11	ENSMUST00000159087.7	antisense	chr1:85106654-85113774
chr1	85159140	85160239	+	MTA_Mm-int	LTR	ERVL-MaLR	chr1	85159763	85159765	+	ENSMUST00000160802.7,ENSMUSG00000089716.7	Gm6264	ENSMUSG00000089716.7	ENSMUST00000160802.7	transcribed_unprocessed_pseudogene	chr1:85159764-85171155
chr1	85266397	85266889	+	MT2_Mm	LTR	ERVL	chr1	85266697	85266699	+	ENSMUST00000163068.7,ENSMUSG00000079455.9	Gm16026	ENSMUSG00000079455.9	ENSMUST00000163068.7	transcribed_unprocessed_pseudogene	chr1:85266698-85277814
chr1	85266397	85266889	+	MT2_Mm	LTR	ERVL	chr1	85266700	85266702	+	ENSMUST00000162652.7,ENSMUSG00000079455.9	Gm16026	ENSMUSG00000079455.9	ENSMUST00000162652.7	transcribed_unprocessed_pseudogene	chr1:85266701-85276176
chr1	85266397	85266889	+	MT2_Mm	LTR	ERVL	chr1	85266713	85266715	+	ENSMUST00000162923.7,ENSMUSG00000079455.9	Gm16026	ENSMUSG00000079455.9	ENSMUST00000162923.7	transcribed_unprocessed_pseudogene	chr1:85266714-85276926
chr1	85575500	85575679	+	(TCTCC)n	Simple_repeat	Simple_repeat	chr1	85575675	85575677	+	ENSMUST00000178024.1,ENSMUSG00000094127.1	G530012D18Rik	ENSMUSG00000094127.1	ENSMUST00000178024.1	protein_coding	chr1:85575676-85577295
chr1	85671809	85671999	+	B3	SINE	B2	chr1	85671824	85671826	+	ENSMUST00000129951.7,ENSMUSG00000026222.16	Sp100	ENSMUSG00000026222.16	ENSMUST00000129951.7	protein_coding	chr1:85671825-85682716
chr1	85674881	85674994	+	5S	rRNA	rRNA	chr1	85674881	85674883	+	ENSMUST00000082480.1,ENSMUSG00000064414.1	n-R5s215	ENSMUSG00000064414.1	ENSMUST00000082480.1	rRNA	chr1:85674882-85674985
chr1	85693939	85694042	+	MER58A	DNA	hAT-Charlie	chr1	85693938	85693940	+	ENSMUST00000134283.1,ENSMUSG00000026222.16	Sp100	ENSMUSG00000026222.16	ENSMUST00000134283.1	protein_coding	chr1:85693939-85699671
chr1	85703193	85703585	-	RLTR53B_Mm	LTR	ERVK	chr1	85703441	85703443	+	ENSMUST00000141709.1,ENSMUSG00000026222.16	Sp100	ENSMUSG00000026222.16	ENSMUST00000141709.1	protein_coding	chr1:85703442-85707995
chr1	85763759	85763891	-	B1_Mur4	SINE	Alu	chr1	85763793	85763795	+	ENSMUST00000175454.3,ENSMUSG00000094834.1	Gm25472	ENSMUSG00000094834.1	ENSMUST00000175454.3	miRNA	chr1:85763794-85763871
chr1	85778430	85778791	-	ORR1B1	LTR	ERVL-MaLR	chr1	85778642	85778644	-	ENSMUST00000159122.7,ENSMUSG00000052760.16	A630001G21Rik	ENSMUSG00000052760.16	ENSMUST00000159122.7	protein_coding	chr1:85717083-85778643
chr1	85784712	85784858	+	B1_Mm	SINE	Alu	chr1	85784712	85784714	+	ENSMUST00000175191.2,ENSMUSG00000092932.2	Gm22906	ENSMUSG00000092932.2	ENSMUST00000175191.2	misc_RNA	chr1:85784713-85784962
chr1	85928668	85928933	+	ORR1E	LTR	ERVL-MaLR	chr1	85928726	85928728	+	ENSMUST00000129392.1,ENSMUSG00000026224.11	4933407L21Rik	ENSMUSG00000026224.11	ENSMUST00000129392.1	protein_coding	chr1:85928727-85940624
chr1	85928668	85928933	+	ORR1E	LTR	ERVL-MaLR	chr1	85928885	85928887	+	ENSMUST00000188949.1,ENSMUSG00000026224.11	4933407L21Rik	ENSMUSG00000026224.11	ENSMUST00000188949.1	protein_coding	chr1:85928886-85931754
chr1	86120725	86121009	+	B4A	SINE	B4	chr1	86120882	86120884	+	ENSMUST00000195317.1,ENSMUSG00000103272.1	Gm37914	ENSMUSG00000103272.1	ENSMUST00000195317.1	TEC	chr1:86120883-86123561
chr1	86127676	86127886	+	B3	SINE	B2	chr1	86127866	86127868	+	ENSMUST00000149946.1,ENSMUSG00000026229.17	Psmd1	ENSMUSG00000026229.17	ENSMUST00000149946.1	protein_coding	chr1:86127867-86132767
chr1	86302729	86302857	-	B1_Mur1	SINE	Alu	chr1	86302831	86302833	+	ENSMUST00000189618.1,ENSMUSG00000079445.3	B3gnt7	ENSMUSG00000079445.3	ENSMUST00000189618.1	protein_coding	chr1:86302832-86304707
chr1	86377931	86378292	-	Charlie8	DNA	hAT-Charlie	chr1	86378275	86378277	-	ENSMUST00000212977.1,ENSMUSG00000110510.1	Gm45908	ENSMUSG00000110510.1	ENSMUST00000212977.1	processed_pseudogene	chr1:86377100-86378276
chr1	86801058	86801092	+	(CA)n	Simple_repeat	Simple_repeat	chr1	86801074	86801076	+	ENSMUST00000192326.1,ENSMUSG00000104121.1	Gm37485	ENSMUSG00000104121.1	ENSMUST00000192326.1	TEC	chr1:86801075-86804027
chr1	86825715	86826346	-	L1MC	LINE	L1	chr1	86826100	86826102	+	ENSMUST00000194093.1,ENSMUSG00000102383.1	Gm38142	ENSMUSG00000102383.1	ENSMUST00000194093.1	TEC	chr1:86826101-86829655
chr1	86834736	86835250	-	MLT1F2	LTR	ERVL-MaLR	chr1	86834994	86834996	+	ENSMUST00000192592.1,ENSMUSG00000104400.1	Gm38010	ENSMUSG00000104400.1	ENSMUST00000192592.1	TEC	chr1:86834995-86837778
chr1	86893292	86893624	+	Lx3A	LINE	L1	chr1	86893572	86893574	+	ENSMUST00000195687.1,ENSMUSG00000102649.1	Gm38021	ENSMUSG00000102649.1	ENSMUST00000195687.1	TEC	chr1:86893573-86895132
chr1	86987732	86988335	+	L1Md_T	LINE	L1	chr1	86988269	86988271	+	ENSMUST00000195266.1,ENSMUSG00000102956.1	Gm37017	ENSMUSG00000102956.1	ENSMUST00000195266.1	TEC	chr1:86988270-86989016
chr1	87079379	87080174	-	RLTR6-int	LTR	ERV1	chr1	87080170	87080172	+	ENSMUST00000186823.1,ENSMUSG00000101625.1	Gm29371	ENSMUSG00000101625.1	ENSMUST00000186823.1	lincRNA	chr1:87080171-87096418
chr1	87089893	87089948	+	B1_Mur4	SINE	Alu	chr1	87089910	87089912	-	ENSMUST00000027455.12,ENSMUSG00000026246.12	Alppl2	ENSMUSG00000026246.12	ENSMUST00000027455.12	protein_coding	chr1:87086694-87089911
chr1	87089893	87089948	+	B1_Mur4	SINE	Alu	chr1	87089927	87089929	-	ENSMUST00000188310.1,ENSMUSG00000026246.12	Alppl2	ENSMUSG00000026246.12	ENSMUST00000188310.1	protein_coding	chr1:87086695-87089928
chr1	87156121	87156188	+	GC_rich	Low_complexity	Low_complexity	chr1	87156164	87156166	-	ENSMUST00000160810.1,ENSMUSG00000026247.13	Ecel1	ENSMUSG00000026247.13	ENSMUST00000160810.1	protein_coding	chr1:87147662-87156165
chr1	87251066	87251151	+	PB1D10	SINE	Alu	chr1	87251147	87251149	+	ENSMUST00000157693.1,ENSMUSG00000088318.1	Gm26187	ENSMUSG00000088318.1	ENSMUST00000157693.1	snRNA	chr1:87251148-87251248
chr1	87308728	87309295	-	Lx8	LINE	L1	chr1	87309225	87309227	+	ENSMUST00000150831.1,ENSMUSG00000026255.15	Efhd1	ENSMUSG00000026255.15	ENSMUST00000150831.1	protein_coding	chr1:87309226-87309742
chr1	87326968	87326999	+	GC_rich	Low_complexity	Low_complexity	chr1	87326997	87326999	+	ENSMUST00000174846.7,ENSMUSG00000048000.15	Gigyf2	ENSMUSG00000048000.15	ENSMUST00000174846.7	protein_coding	chr1:87326998-87355722
chr1	87341454	87341561	-	U6	snRNA	snRNA	chr1	87341560	87341562	-	ENSMUST00000178461.1,ENSMUSG00000095281.1	Gm22549	ENSMUSG00000095281.1	ENSMUST00000178461.1	snRNA	chr1:87341455-87341561
chr1	87341561	87341683	-	ID_B1	SINE	B4	chr1	87341560	87341562	-	ENSMUST00000178461.1,ENSMUSG00000095281.1	Gm22549	ENSMUSG00000095281.1	ENSMUST00000178461.1	snRNA	chr1:87341455-87341561
chr1	87820534	87820724	+	B2_Mm2	SINE	B2	chr1	87820706	87820708	+	ENSMUST00000136708.1,ENSMUSG00000056055.13	Sag	ENSMUSG00000056055.13	ENSMUST00000136708.1	protein_coding	chr1:87820707-87824469
chr1	87826444	87826756	+	MLT1A0	LTR	ERVL-MaLR	chr1	87826487	87826489	+	ENSMUST00000145385.1,ENSMUSG00000056055.13	Sag	ENSMUSG00000056055.13	ENSMUST00000145385.1	protein_coding	chr1:87826488-87835414
chr1	87865062	87865102	+	(T)n	Simple_repeat	Simple_repeat	chr1	87865072	87865074	+	ENSMUST00000191704.1,ENSMUSG00000103996.1	4833421G17Rik	ENSMUSG00000103996.1	ENSMUST00000191704.1	TEC	chr1:87865073-87865916
chr1	88015721	88016252	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	88015923	88015925	+	ENSMUST00000178574.1,ENSMUSG00000095942.1	Gm25198	ENSMUSG00000095942.1	ENSMUST00000178574.1	miRNA	chr1:88015924-88016033
chr1	88129337	88129588	+	(TC)n	Simple_repeat	Simple_repeat	chr1	88129580	88129582	+	ENSMUST00000117158.1,ENSMUSG00000081261.1	Gm15370	ENSMUSG00000081261.1	ENSMUST00000117158.1	unprocessed_pseudogene	chr1:88129581-88129833
chr1	88153741	88153790	+	(TG)n	Simple_repeat	Simple_repeat	chr1	88153787	88153789	+	ENSMUST00000117057.1,ENSMUSG00000082677.1	Gm15371	ENSMUSG00000082677.1	ENSMUST00000117057.1	unprocessed_pseudogene	chr1:88153788-88154571
chr1	88218549	88218570	+	AT_rich	Low_complexity	Low_complexity	chr1	88218553	88218555	-	ENSMUST00000174821.1,ENSMUSG00000092220.1	Gm20528	ENSMUSG00000092220.1	ENSMUST00000174821.1	processed_transcript	chr1:88211969-88218554
chr1	88270793	88271290	+	RLTR10C	LTR	ERVK	chr1	88270946	88270948	-	ENSMUST00000148384.1,ENSMUSG00000044783.16	Hjurp	ENSMUSG00000044783.16	ENSMUST00000148384.1	protein_coding	chr1:88269378-88270947
chr1	88459656	88459850	-	ORR1E	LTR	ERVL-MaLR	chr1	88459682	88459684	+	ENSMUST00000186556.1,ENSMUSG00000100908.1	Gm28888	ENSMUSG00000100908.1	ENSMUST00000186556.1	lincRNA	chr1:88459683-88465558
chr1	88509933	88510276	-	MLT1A0	LTR	ERVL-MaLR	chr1	88510065	88510067	-	ENSMUST00000067625.8,ENSMUSG00000062310.7	Glrp1	ENSMUSG00000062310.7	ENSMUST00000067625.8	protein_coding	chr1:88499871-88510066
chr1	88551216	88551560	-	RLTR10B	LTR	ERVK	chr1	88551516	88551518	+	ENSMUST00000189394.1,ENSMUSG00000100798.1	Gm19589	ENSMUSG00000100798.1	ENSMUST00000189394.1	lincRNA	chr1:88551517-88562167
chr1	88754788	88755137	+	ORR1A4	LTR	ERVL-MaLR	chr1	88754889	88754891	+	ENSMUST00000181016.2,ENSMUSG00000097398.2	Platr5	ENSMUSG00000097398.2	ENSMUST00000181016.2	lincRNA	chr1:88754890-88755736
chr1	88754788	88755137	+	ORR1A4	LTR	ERVL-MaLR	chr1	88754953	88754955	+	ENSMUST00000180596.1,ENSMUSG00000097398.2	Platr5	ENSMUSG00000097398.2	ENSMUST00000180596.1	lincRNA	chr1:88754954-88755709
chr1	89070251	89070433	+	C-rich	Low_complexity	Low_complexity	chr1	89070414	89070416	+	ENSMUST00000066279.10,ENSMUSG00000036206.12	Sh3bp4	ENSMUSG00000036206.12	ENSMUST00000066279.10	protein_coding	chr1:89070415-89155068
chr1	89096764	89097081	-	ERVB7_1-LTR_MM	LTR	ERVK	chr1	89097072	89097074	+	ENSMUST00000195426.1,ENSMUSG00000102700.1	Gm38312	ENSMUSG00000102700.1	ENSMUST00000195426.1	TEC	chr1:89097073-89098818
chr1	89455206	89455302	-	L1MEd	LINE	L1	chr1	89455255	89455257	+	ENSMUST00000185417.1,ENSMUSG00000055013.15	Agap1	ENSMUSG00000055013.15	ENSMUST00000185417.1	protein_coding	chr1:89455256-89459706
chr1	89580211	89580239	+	GC_rich	Low_complexity	Low_complexity	chr1	89580235	89580237	+	ENSMUST00000074945.6,ENSMUSG00000055013.15	Agap1	ENSMUSG00000055013.15	ENSMUST00000074945.6	protein_coding	chr1:89580236-89895277
chr1	89684801	89685051	+	7SK	RNA	RNA	chr1	89684801	89684803	+	ENSMUST00000158150.1,ENSMUSG00000088775.1	Gm26037	ENSMUSG00000088775.1	ENSMUST00000158150.1	misc_RNA	chr1:89684802-89685112
chr1	89825396	89825885	-	MT2C_Mm	LTR	ERVL	chr1	89825480	89825482	+	ENSMUST00000193177.1,ENSMUSG00000103252.1	Gm37521	ENSMUSG00000103252.1	ENSMUST00000193177.1	TEC	chr1:89825481-89827525
chr1	90089925	90090364	-	IAPLTR2a2_Mm	LTR	ERVK	chr1	90090143	90090145	-	ENSMUST00000189690.6,ENSMUSG00000026301.16	Iqca	ENSMUSG00000026301.16	ENSMUST00000189690.6	protein_coding	chr1:90042135-90090144
chr1	90089925	90090364	-	IAPLTR2a2_Mm	LTR	ERVK	chr1	90090142	90090144	-	ENSMUST00000186403.1,ENSMUSG00000026301.16	Iqca	ENSMUSG00000026301.16	ENSMUST00000186403.1	protein_coding	chr1:90082266-90090143
chr1	90327306	90327400	+	5S	rRNA	rRNA	chr1	90327311	90327313	+	ENSMUST00000184315.1,ENSMUSG00000098368.1	Gm27648	ENSMUSG00000098368.1	ENSMUST00000184315.1	rRNA	chr1:90327312-90327418
chr1	90602980	90603031	+	(TG)n	Simple_repeat	Simple_repeat	chr1	90602980	90602982	+	ENSMUST00000036153.11,ENSMUSG00000034432.11	Cops8	ENSMUSG00000034432.11	ENSMUST00000036153.11	protein_coding	chr1:90602981-90613341
chr1	90871337	90871666	-	Tigger5b	DNA	TcMar-Tigger	chr1	90871418	90871420	-	ENSMUST00000194161.1,ENSMUSG00000103978.1	4930474B08Rik	ENSMUSG00000103978.1	ENSMUST00000194161.1	TEC	chr1:90870583-90871419
chr1	90938902	90939213	+	L1MB2	LINE	L1	chr1	90939168	90939170	+	ENSMUST00000136220.1,ENSMUSG00000026303.6	Mlph	ENSMUSG00000026303.6	ENSMUST00000136220.1	protein_coding	chr1:90939169-90940239
chr1	91053412	91053459	+	GC_rich	Low_complexity	Low_complexity	chr1	91053443	91053445	+	ENSMUST00000068167.12,ENSMUSG00000026305.15	Lrrfip1	ENSMUSG00000026305.15	ENSMUST00000068167.12	protein_coding	chr1:91053444-91128944
chr1	91053412	91053459	+	GC_rich	Low_complexity	Low_complexity	chr1	91053453	91053455	+	ENSMUST00000097649.9,ENSMUSG00000026305.15	Lrrfip1	ENSMUSG00000026305.15	ENSMUST00000097649.9	protein_coding	chr1:91053454-91117315
chr1	91111009	91111406	+	MTA_Mm	LTR	ERVL-MaLR	chr1	91111213	91111215	+	ENSMUST00000188094.6,ENSMUSG00000026305.15	Lrrfip1	ENSMUSG00000026305.15	ENSMUST00000188094.6	protein_coding	chr1:91111214-91116921
chr1	91111009	91111406	+	MTA_Mm	LTR	ERVL-MaLR	chr1	91111232	91111234	+	ENSMUST00000188708.1,ENSMUSG00000026305.15	Lrrfip1	ENSMUSG00000026305.15	ENSMUST00000188708.1	protein_coding	chr1:91111233-91114852
chr1	91283465	91283654	+	B3	SINE	B2	chr1	91283651	91283653	+	ENSMUST00000185697.1,ENSMUSG00000034343.14	Ube2f	ENSMUSG00000034343.14	ENSMUST00000185697.1	protein_coding	chr1:91283652-91285016
chr1	91304213	91304694	-	MT2C_Mm	LTR	ERVL	chr1	91304404	91304406	-	ENSMUST00000181737.1,ENSMUSG00000097285.1	Gm26683	ENSMUSG00000097285.1	ENSMUST00000181737.1	lincRNA	chr1:91297203-91304405
chr1	91398744	91398766	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	91398754	91398756	-	ENSMUST00000187105.6,ENSMUSG00000026309.14	Ilkap	ENSMUSG00000026309.14	ENSMUST00000187105.6	protein_coding	chr1:91375832-91398755
chr1	91489975	91490039	+	(TTC)n	Simple_repeat	Simple_repeat	chr1	91490008	91490010	-	ENSMUST00000188924.1,ENSMUSG00000101958.1	Gm19085	ENSMUSG00000101958.1	ENSMUST00000188924.1	processed_pseudogene	chr1:91487729-91490009
chr1	91822400	91822769	-	L1MB3	LINE	L1	chr1	91822514	91822516	+	ENSMUST00000188329.1,ENSMUSG00000101414.1	Gm29101	ENSMUSG00000101414.1	ENSMUST00000188329.1	sense_intronic	chr1:91822515-91823985
chr1	91934846	91934868	+	(A)n	Simple_repeat	Simple_repeat	chr1	91934863	91934865	-	ENSMUST00000191327.1,ENSMUSG00000026313.16	Hdac4	ENSMUSG00000026313.16	ENSMUST00000191327.1	protein_coding	chr1:91933203-91934864
chr1	91992492	91992638	+	B1_Mus1	SINE	Alu	chr1	91992625	91992627	-	ENSMUST00000189730.1,ENSMUSG00000026313.16	Hdac4	ENSMUSG00000026313.16	ENSMUST00000189730.1	protein_coding	chr1:91989051-91992626
chr1	92195669	92195707	+	(A)n	Simple_repeat	Simple_repeat	chr1	92195693	92195695	-	ENSMUST00000212867.1,ENSMUSG00000026313.16	Hdac4	ENSMUSG00000026313.16	ENSMUST00000212867.1	protein_coding	chr1:92030144-92195694
chr1	92195669	92195707	+	(A)n	Simple_repeat	Simple_repeat	chr1	92195698	92195700	-	ENSMUST00000212408.1,ENSMUSG00000026313.16	Hdac4	ENSMUSG00000026313.16	ENSMUST00000212408.1	protein_coding	chr1:92030144-92195699
chr1	92574508	92574614	+	B3A	SINE	B2	chr1	92574613	92574615	+	ENSMUST00000185802.1,ENSMUSG00000099363.1	Gm28478	ENSMUSG00000099363.1	ENSMUST00000185802.1	unprocessed_pseudogene	chr1:92574614-92574796
chr1	92589612	92589876	+	MLTR14	LTR	ERV1	chr1	92589871	92589873	+	ENSMUST00000204141.1,ENSMUSG00000107778.1	Gm44098	ENSMUSG00000107778.1	ENSMUST00000204141.1	unprocessed_pseudogene	chr1:92589872-92589917
chr1	92716989	92717368	-	MTD	LTR	ERVL-MaLR	chr1	92717201	92717203	-	ENSMUST00000188188.1,ENSMUSG00000100546.1	Gm29483	ENSMUSG00000100546.1	ENSMUST00000188188.1	lincRNA	chr1:92714234-92717202
chr1	92831634	92831684	+	GC_rich	Low_complexity	Low_complexity	chr1	92831644	92831646	+	ENSMUST00000045970.7,ENSMUSG00000034220.7	Gpc1	ENSMUSG00000034220.7	ENSMUST00000045970.7	protein_coding	chr1:92831645-92860779
chr1	92910770	92910817	+	GC_rich	Low_complexity	Low_complexity	chr1	92910782	92910784	+	ENSMUST00000027487.14,ENSMUSG00000026269.14	Rnpepl1	ENSMUSG00000026269.14	ENSMUST00000027487.14	protein_coding	chr1:92910783-92920841
chr1	92910840	92910900	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	92910852	92910854	+	ENSMUST00000180306.1,ENSMUSG00000026269.14	Rnpepl1	ENSMUSG00000026269.14	ENSMUST00000180306.1	protein_coding	chr1:92910853-92913408
chr1	92950446	92950613	+	MLT1A0	LTR	ERVL-MaLR	chr1	92950589	92950591	-	ENSMUST00000191563.1,ENSMUSG00000100632.1	9430060I03Rik	ENSMUSG00000100632.1	ENSMUST00000191563.1	antisense	chr1:92933526-92950590
chr1	92955424	92956590	+	MTB-int	LTR	ERVL-MaLR	chr1	92956163	92956165	+	ENSMUST00000189697.1,ENSMUSG00000026271.15	Gpr35	ENSMUSG00000026271.15	ENSMUST00000189697.1	protein_coding	chr1:92956164-92983009
chr1	93311161	93311582	+	MTD	LTR	ERVL-MaLR	chr1	93311343	93311345	-	ENSMUST00000148355.1,ENSMUSG00000026274.11	Pask	ENSMUSG00000026274.11	ENSMUST00000148355.1	protein_coding	chr1:93310085-93311344
chr1	93363254	93363357	+	U6	snRNA	snRNA	chr1	93363254	93363256	+	ENSMUST00000082455.1,ENSMUSG00000064389.1	Gm26446	ENSMUSG00000064389.1	ENSMUST00000082455.1	snRNA	chr1:93363255-93363357
chr1	93445651	93445673	+	GC_rich	Low_complexity	Low_complexity	chr1	93445651	93445653	-	ENSMUST00000189951.6,ENSMUSG00000034088.15	Hdlbp	ENSMUSG00000034088.15	ENSMUST00000189951.6	protein_coding	chr1:93428569-93445652
chr1	93504980	93505428	-	RLTR28B	LTR	ERVL	chr1	93505192	93505194	+	ENSMUST00000152476.1,ENSMUSG00000026276.20	Sept2	ENSMUSG00000026276.20	ENSMUST00000152476.1	protein_coding	chr1:93505193-93507019
chr1	93512057	93512217	+	G-rich	Low_complexity	Low_complexity	chr1	93512078	93512080	+	ENSMUST00000120301.7,ENSMUSG00000034066.13	Farp2	ENSMUSG00000034066.13	ENSMUST00000120301.7	protein_coding	chr1:93512079-93621976
chr1	93512057	93512217	+	G-rich	Low_complexity	Low_complexity	chr1	93512111	93512113	+	ENSMUST00000122402.2,ENSMUSG00000034066.13	Farp2	ENSMUSG00000034066.13	ENSMUST00000122402.2	protein_coding	chr1:93512112-93581296
chr1	93531796	93531926	-	B1_Mur1	SINE	Alu	chr1	93531814	93531816	+	ENSMUST00000194919.1,ENSMUSG00000103854.1	Gm37250	ENSMUSG00000103854.1	ENSMUST00000194919.1	TEC	chr1:93531815-93534202
chr1	93658247	93658721	-	RMER19B	LTR	ERVK	chr1	93658658	93658660	-	ENSMUST00000186287.2,ENSMUSG00000026277.14	Stk25	ENSMUSG00000026277.14	ENSMUST00000186287.2	protein_coding	chr1:93627654-93658659
chr1	93751283	93751746	+	RLTR12D	LTR	ERVK	chr1	93751499	93751501	+	ENSMUST00000149436.7,ENSMUSG00000026280.17	Atg4b	ENSMUSG00000026280.17	ENSMUST00000149436.7	protein_coding	chr1:93751500-93775683
chr1	93754833	93754866	+	GC_rich	Low_complexity	Low_complexity	chr1	93754863	93754865	-	ENSMUST00000112905.3,ENSMUSG00000026279.14	Thap4	ENSMUSG00000026279.14	ENSMUST00000112905.3	protein_coding	chr1:93705390-93754864
chr1	93798932	93799056	+	L1MC2	LINE	L1	chr1	93799000	93799002	-	ENSMUST00000112893.1,ENSMUSG00000026281.15	Dtymk	ENSMUSG00000026281.15	ENSMUST00000112893.1	protein_coding	chr1:93792724-93799001
chr1	93808572	93808671	-	U6	snRNA	snRNA	chr1	93808670	93808672	-	ENSMUST00000158336.1,ENSMUSG00000088961.1	Gm22089	ENSMUSG00000088961.1	ENSMUST00000158336.1	snRNA	chr1:93808570-93808671
chr1	93861800	93861886	-	ID2	SINE	ID	chr1	93861825	93861827	+	ENSMUST00000187896.1,ENSMUSG00000094651.2	Gal3st2	ENSMUSG00000094651.2	ENSMUST00000187896.1	protein_coding	chr1:93861826-93873824
chr1	93990101	93990563	-	RLTR10	LTR	ERVK	chr1	93990508	93990510	+	ENSMUST00000097632.4,ENSMUSG00000073608.4	Gal3st2c	ENSMUSG00000073608.4	ENSMUST00000097632.4	protein_coding	chr1:93990509-94017147
chr1	94796603	94797651	-	Lx6	LINE	L1	chr1	94797082	94797084	+	ENSMUST00000190754.1,ENSMUSG00000100518.1	4930440C22Rik	ENSMUSG00000100518.1	ENSMUST00000190754.1	lincRNA	chr1:94797083-94802452
chr1	94796603	94797651	-	Lx6	LINE	L1	chr1	94797441	94797443	+	ENSMUST00000185490.1,ENSMUSG00000100518.1	4930440C22Rik	ENSMUSG00000100518.1	ENSMUST00000185490.1	lincRNA	chr1:94797442-94802472
chr1	95040043	95040095	+	(TTA)n	Simple_repeat	Simple_repeat	chr1	95040042	95040044	-	ENSMUST00000158685.1,ENSMUSG00000089310.1	Gm23181	ENSMUSG00000089310.1	ENSMUST00000158685.1	snoRNA	chr1:95039934-95040043
chr1	95328416	95328883	+	Lx9	LINE	L1	chr1	95328680	95328682	+	ENSMUST00000193380.1,ENSMUSG00000103973.1	BC055308	ENSMUSG00000103973.1	ENSMUST00000193380.1	TEC	chr1:95328681-95331218
chr1	95716106	95716720	-	MTD-int	LTR	ERVL-MaLR	chr1	95716517	95716519	-	ENSMUST00000187352.1,ENSMUSG00000100777.1	4930598F16Rik	ENSMUSG00000100777.1	ENSMUST00000187352.1	lincRNA	chr1:95701184-95716518
chr1	95736169	95741608	+	L1_Mus2	LINE	L1	chr1	95738195	95738197	+	ENSMUST00000194989.1,ENSMUSG00000102718.1	Gm37761	ENSMUSG00000102718.1	ENSMUST00000194989.1	TEC	chr1:95738196-95740293
chr1	95832128	95832235	-	U6	snRNA	snRNA	chr1	95832234	95832236	-	ENSMUST00000179775.1,ENSMUSG00000095955.1	Gm22360	ENSMUSG00000095955.1	ENSMUST00000179775.1	snRNA	chr1:95832129-95832235
chr1	96266896	96266945	+	(CA)n	Simple_repeat	Simple_repeat	chr1	96266940	96266942	-	ENSMUST00000116695.3,ENSMUSG00000080345.3	Gm24586	ENSMUSG00000080345.3	ENSMUST00000116695.3	miRNA	chr1:96266853-96266941
chr1	96302943	96303460	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	96303145	96303147	+	ENSMUST00000180116.1,ENSMUSG00000096585.1	Gm22917	ENSMUSG00000096585.1	ENSMUST00000180116.1	miRNA	chr1:96303146-96303255
chr1	96313049	96314560	-	Lx5	LINE	L1	chr1	96313241	96313243	+	ENSMUST00000192033.1,ENSMUSG00000102658.1	Gm37076	ENSMUSG00000102658.1	ENSMUST00000192033.1	TEC	chr1:96313242-96315535
chr1	96556661	96556870	+	RMER5	LTR	ERV1	chr1	96556702	96556704	-	ENSMUST00000187961.1,ENSMUSG00000100336.1	Gm29601	ENSMUSG00000100336.1	ENSMUST00000187961.1	lincRNA	chr1:96543059-96556703
chr1	96617098	96617205	+	U6	snRNA	snRNA	chr1	96617098	96617100	+	ENSMUST00000178491.1,ENSMUSG00000095610.1	Gm26245	ENSMUSG00000095610.1	ENSMUST00000178491.1	snRNA	chr1:96617099-96617205
chr1	97715127	97715198	+	(CCA)n	Simple_repeat	Simple_repeat	chr1	97715148	97715150	-	ENSMUST00000137758.1,ENSMUSG00000040648.14	Ppip5k2	ENSMUSG00000040648.14	ENSMUST00000137758.1	protein_coding	chr1:97706048-97715149
chr1	97721287	97721322	+	(A)n	Simple_repeat	Simple_repeat	chr1	97721306	97721308	-	ENSMUST00000189992.1,ENSMUSG00000040648.14	Ppip5k2	ENSMUSG00000040648.14	ENSMUST00000189992.1	protein_coding	chr1:97718785-97721307
chr1	97773586	97773718	-	B1_Mus2	SINE	Alu	chr1	97773714	97773716	+	ENSMUST00000188101.1,ENSMUSG00000026333.14	Gin1	ENSMUSG00000026333.14	ENSMUST00000188101.1	protein_coding	chr1:97773715-97776040
chr1	97936399	97936616	+	7SK	RNA	RNA	chr1	97936399	97936401	+	ENSMUST00000158544.1,ENSMUSG00000089169.1	Gm25413	ENSMUSG00000089169.1	ENSMUST00000158544.1	misc_RNA	chr1:97936400-97936711
chr1	98049821	98049928	+	U6	snRNA	snRNA	chr1	98049821	98049823	+	ENSMUST00000178398.1,ENSMUSG00000096085.1	Gm24465	ENSMUSG00000096085.1	ENSMUST00000178398.1	snRNA	chr1:98049822-98049928
chr1	98173439	98173695	+	MTC	LTR	ERVL-MaLR	chr1	98173647	98173649	+	ENSMUST00000189232.1,ENSMUSG00000100711.1	Gm29461	ENSMUSG00000100711.1	ENSMUST00000189232.1	lincRNA	chr1:98173648-98190698
chr1	98549248	98549744	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	98549450	98549452	+	ENSMUST00000178484.1,ENSMUSG00000096193.1	Gm26134	ENSMUSG00000096193.1	ENSMUST00000178484.1	miRNA	chr1:98549451-98549560
chr1	98589314	98589572	+	IAP1-MM_LTR	LTR	ERVK	chr1	98589516	98589518	+	ENSMUST00000191042.1,ENSMUSG00000100009.6	Gm7967	ENSMUSG00000100009.6	ENSMUST00000191042.1	lincRNA	chr1:98589517-98594558
chr1	98589314	98589572	+	IAP1-MM_LTR	LTR	ERVK	chr1	98589516	98589518	+	ENSMUST00000191409.6,ENSMUSG00000100009.6	Gm7967	ENSMUSG00000100009.6	ENSMUST00000191409.6	lincRNA	chr1:98589517-98607384
chr1	98589314	98589572	+	IAP1-MM_LTR	LTR	ERVK	chr1	98589517	98589519	+	ENSMUST00000190991.1,ENSMUSG00000100009.6	Gm7967	ENSMUSG00000100009.6	ENSMUST00000190991.1	lincRNA	chr1:98589518-98607144
chr1	99847964	99848013	+	(T)n	Simple_repeat	Simple_repeat	chr1	99847983	99847985	+	ENSMUST00000191630.1,ENSMUSG00000104104.1	Gm37877	ENSMUSG00000104104.1	ENSMUST00000191630.1	TEC	chr1:99847984-99850692
chr1	100861588	100862106	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	100861792	100861794	+	ENSMUST00000103851.1,ENSMUSG00000077039.1	Gm25537	ENSMUSG00000077039.1	ENSMUST00000103851.1	miRNA	chr1:100861793-100861901
chr1	101155645	101155959	-	RMER17B	LTR	ERVK	chr1	101155808	101155810	+	ENSMUST00000187932.1,ENSMUSG00000100684.1	Gm20268	ENSMUSG00000100684.1	ENSMUST00000187932.1	lincRNA	chr1:101155809-101175202
chr1	101880740	101882314	+	L1_Mus1	LINE	L1	chr1	101880740	101880742	-	ENSMUST00000190483.1,ENSMUSG00000100349.1	Gm28188	ENSMUSG00000100349.1	ENSMUST00000190483.1	processed_pseudogene	chr1:101880506-101880741
chr1	101892960	101895314	-	Lx3A	LINE	L1	chr1	101895090	101895092	-	ENSMUST00000186885.1,ENSMUSG00000099375.1	Gm28187	ENSMUSG00000099375.1	ENSMUST00000186885.1	lincRNA	chr1:101892958-101895091
chr1	103724226	103724436	+	L1Md_T	LINE	L1	chr1	103724344	103724346	+	ENSMUST00000192862.1,ENSMUSG00000102325.1	Gm37789	ENSMUSG00000102325.1	ENSMUST00000192862.1	TEC	chr1:103724345-103727233
chr1	104484967	104486012	-	Lx	LINE	L1	chr1	104485956	104485958	+	ENSMUST00000157536.1,ENSMUSG00000088161.1	Gm23537	ENSMUSG00000088161.1	ENSMUST00000157536.1	misc_RNA	chr1:104485957-104486286
chr1	105564522	105564741	-	URR1A	DNA	hAT-Charlie	chr1	105564577	105564579	-	ENSMUST00000190242.1,ENSMUSG00000100672.1	Gm28404	ENSMUSG00000100672.1	ENSMUST00000190242.1	sense_intronic	chr1:105564126-105564578
chr1	105567977	105573406	+	L1Md_T	LINE	L1	chr1	105569138	105569140	-	ENSMUST00000188743.1,ENSMUSG00000101214.1	Gm28403	ENSMUSG00000101214.1	ENSMUST00000188743.1	sense_overlapping	chr1:105382260-105569139
chr1	105567977	105573406	+	L1Md_T	LINE	L1	chr1	105568947	105568949	-	ENSMUST00000190945.6,ENSMUSG00000056536.14	Pign	ENSMUSG00000056536.14	ENSMUST00000190945.6	protein_coding	chr1:105521137-105568948
chr1	105567977	105573406	+	L1Md_T	LINE	L1	chr1	105569164	105569166	-	ENSMUST00000190139.1,ENSMUSG00000056536.14	Pign	ENSMUSG00000056536.14	ENSMUST00000190139.1	protein_coding	chr1:105521146-105569165
chr1	105649472	105649653	-	B2_Mm2	SINE	B2	chr1	105649650	105649652	-	ENSMUST00000188858.1,ENSMUSG00000056536.14	Pign	ENSMUSG00000056536.14	ENSMUST00000188858.1	protein_coding	chr1:105646783-105649651
chr1	105706896	105709003	-	Lx3C	LINE	L1	chr1	105708572	105708574	+	ENSMUST00000192363.1,ENSMUSG00000104044.1	Gm37566	ENSMUSG00000104044.1	ENSMUST00000192363.1	TEC	chr1:105708573-105712927
chr1	105730814	105730924	+	B2_Mm2	SINE	B2	chr1	105730813	105730815	+	ENSMUST00000185750.1,ENSMUSG00000026319.13	Relch	ENSMUSG00000026319.13	ENSMUST00000185750.1	protein_coding	chr1:105730814-105734580
chr1	105780720	105780794	+	GC_rich	Low_complexity	Low_complexity	chr1	105780749	105780751	+	ENSMUST00000187812.1,ENSMUSG00000026321.7	Tnfrsf11a	ENSMUSG00000026321.7	ENSMUST00000187812.1	protein_coding	chr1:105780750-105814403
chr1	105890965	105891075	+	CT-rich	Low_complexity	Low_complexity	chr1	105891011	105891013	-	ENSMUST00000194221.1,ENSMUSG00000102690.1	Gm37779	ENSMUSG00000102690.1	ENSMUST00000194221.1	TEC	chr1:105887633-105891012
chr1	105945554	105945658	+	U6	snRNA	snRNA	chr1	105945553	105945555	+	ENSMUST00000158581.1,ENSMUSG00000089206.1	Gm26214	ENSMUSG00000089206.1	ENSMUST00000158581.1	snRNA	chr1:105945554-105945660
chr1	106075852	106076193	+	RLTR31B2	LTR	ERVK	chr1	106075893	106075895	-	ENSMUST00000193577.1,ENSMUSG00000102501.1	Gm37372	ENSMUSG00000102501.1	ENSMUST00000193577.1	TEC	chr1:106072584-106075894
chr1	106218666	106219462	-	Lx5	LINE	L1	chr1	106219313	106219315	+	ENSMUST00000194600.1,ENSMUSG00000103291.1	Gm38235	ENSMUSG00000103291.1	ENSMUST00000194600.1	TEC	chr1:106219314-106224265
chr1	106546582	106546704	+	B3A	SINE	B2	chr1	106546630	106546632	-	ENSMUST00000183743.1,ENSMUSG00000098344.1	Mir3473f	ENSMUSG00000098344.1	ENSMUST00000183743.1	miRNA	chr1:106546496-106546631
chr1	106714261	106714343	+	G-rich	Low_complexity	Low_complexity	chr1	106714273	106714275	-	ENSMUST00000112751.1,ENSMUSG00000057329.7	Bcl2	ENSMUSG00000057329.7	ENSMUST00000112751.1	protein_coding	chr1:106538178-106714274
chr1	107686731	107687147	+	RLTR10B2	LTR	ERVK	chr1	107687007	107687009	+	ENSMUST00000153774.1,ENSMUSG00000086161.1	Gm15389	ENSMUSG00000086161.1	ENSMUST00000153774.1	lincRNA	chr1:107687008-107693514
chr1	107756601	107756708	-	U6	snRNA	snRNA	chr1	107756707	107756709	-	ENSMUST00000179841.1,ENSMUSG00000096241.1	Gm24267	ENSMUSG00000096241.1	ENSMUST00000179841.1	snRNA	chr1:107756602-107756708
chr1	107756708	107756786	-	Lx5	LINE	L1	chr1	107756707	107756709	-	ENSMUST00000179841.1,ENSMUSG00000096241.1	Gm24267	ENSMUSG00000096241.1	ENSMUST00000179841.1	snRNA	chr1:107756602-107756708
chr1	107916812	107917465	-	Lx9	LINE	L1	chr1	107917258	107917260	+	ENSMUST00000189845.6,ENSMUSG00000100457.6	D830032E09Rik	ENSMUSG00000100457.6	ENSMUST00000189845.6	lincRNA	chr1:107917259-107950934
chr1	107916812	107917465	-	Lx9	LINE	L1	chr1	107917284	107917286	+	ENSMUST00000186875.6,ENSMUSG00000100457.6	D830032E09Rik	ENSMUSG00000100457.6	ENSMUST00000186875.6	lincRNA	chr1:107917285-107950947
chr1	108416879	108417171	-	Lx5	LINE	L1	chr1	108417076	108417078	+	ENSMUST00000194081.1,ENSMUSG00000104478.1	Gm38212	ENSMUSG00000104478.1	ENSMUST00000194081.1	TEC	chr1:108417077-108419832
chr1	109804759	109804989	+	7SK	RNA	RNA	chr1	109804759	109804761	+	ENSMUST00000122792.1,ENSMUSG00000084741.1	Gm25293	ENSMUSG00000084741.1	ENSMUST00000122792.1	misc_RNA	chr1:109804760-109805044
chr1	109982314	109982431	+	(TG)n	Simple_repeat	Simple_repeat	chr1	109982430	109982432	+	ENSMUST00000137092.7,ENSMUSG00000026312.17	Cdh7	ENSMUSG00000026312.17	ENSMUST00000137092.7	protein_coding	chr1:109982431-109995955
chr1	110967337	110967972	+	Lx	LINE	L1	chr1	110967436	110967438	-	ENSMUST00000192257.1,ENSMUSG00000102160.1	Gm36944	ENSMUSG00000102160.1	ENSMUST00000192257.1	TEC	chr1:110964679-110967437
chr1	110977552	110977680	+	(TC)n	Simple_repeat	Simple_repeat	chr1	110977583	110977585	-	ENSMUST00000187555.1,ENSMUSG00000047216.8	Cdh19	ENSMUSG00000047216.8	ENSMUST00000187555.1	protein_coding	chr1:110950353-110977584
chr1	113963932	113964300	-	RLTR9E	LTR	ERVK	chr1	113964133	113964135	-	ENSMUST00000180837.1,ENSMUSG00000097648.1	9330185C12Rik	ENSMUSG00000097648.1	ENSMUST00000180837.1	lincRNA	chr1:113891385-113964134
chr1	115219761	115220228	-	L1Md_F2	LINE	L1	chr1	115219762	115219764	-	ENSMUST00000185902.1,ENSMUSG00000101687.1	Gm4854	ENSMUSG00000101687.1	ENSMUST00000185902.1	processed_pseudogene	chr1:115219190-115219763
chr1	116394373	116395120	+	L1_Mus1	LINE	L1	chr1	116394412	116394414	-	ENSMUST00000175207.1,ENSMUSG00000092948.1	Gm23393	ENSMUSG00000092948.1	ENSMUST00000175207.1	miRNA	chr1:116394342-116394413
chr1	117536300	117536461	+	U1	snRNA	snRNA	chr1	117536300	117536302	+	ENSMUST00000083931.1,ENSMUSG00000065865.1	Gm24030	ENSMUSG00000065865.1	ENSMUST00000083931.1	snRNA	chr1:117536301-117536464
chr1	117561021	117561540	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr1	117561229	117561231	+	ENSMUST00000184268.1,ENSMUSG00000098815.1	Gm27785	ENSMUSG00000098815.1	ENSMUST00000184268.1	miRNA	chr1:117561230-117561339
chr1	117625478	117627382	+	MMSAT4	Satellite	Satellite	chr1	117625521	117625523	+	ENSMUST00000186652.2,ENSMUSG00000101373.2	Zfp813-ps	ENSMUSG00000101373.2	ENSMUST00000186652.2	processed_pseudogene	chr1:117625522-117628027
chr1	117662030	117662298	-	L1_Mus3	LINE	L1	chr1	117662290	117662292	+	ENSMUST00000189430.1,ENSMUSG00000099615.1	Gm28362	ENSMUSG00000099615.1	ENSMUST00000189430.1	unprocessed_pseudogene	chr1:117662291-117678373
chr1	117662283	117662423	+	MurSatRep1	Unknown	Unknown	chr1	117662290	117662292	+	ENSMUST00000189430.1,ENSMUSG00000099615.1	Gm28362	ENSMUSG00000099615.1	ENSMUST00000189430.1	unprocessed_pseudogene	chr1:117662291-117678373
chr1	117741107	117741377	-	L1_Mus3	LINE	L1	chr1	117741366	117741368	+	ENSMUST00000187470.1,ENSMUSG00000100527.1	Gm28359	ENSMUSG00000100527.1	ENSMUST00000187470.1	unprocessed_pseudogene	chr1:117741367-117768622
chr1	117868247	117868527	-	L1_Mus3	LINE	L1	chr1	117868521	117868523	+	ENSMUST00000190869.1,ENSMUSG00000100886.1	Gm7195	ENSMUSG00000100886.1	ENSMUST00000190869.1	unprocessed_pseudogene	chr1:117868522-117899722
chr1	117868512	117868652	+	MurSatRep1	Unknown	Unknown	chr1	117868521	117868523	+	ENSMUST00000190869.1,ENSMUSG00000100886.1	Gm7195	ENSMUSG00000100886.1	ENSMUST00000190869.1	unprocessed_pseudogene	chr1:117868522-117899722
chr1	118010238	118010518	-	L1_Mus3	LINE	L1	chr1	118010510	118010512	+	ENSMUST00000189292.1,ENSMUSG00000100703.6	Gm28358	ENSMUSG00000100703.6	ENSMUST00000189292.1	transcribed_unprocessed_pseudogene	chr1:118010511-118011828
chr1	118010503	118010643	+	MurSatRep1	Unknown	Unknown	chr1	118010510	118010512	+	ENSMUST00000189292.1,ENSMUSG00000100703.6	Gm28358	ENSMUSG00000100703.6	ENSMUST00000189292.1	transcribed_unprocessed_pseudogene	chr1:118010511-118011828
chr1	118030042	118030322	-	L1_Mus3	LINE	L1	chr1	118030314	118030316	+	ENSMUST00000188934.1,ENSMUSG00000100177.1	Gm29489	ENSMUSG00000100177.1	ENSMUST00000188934.1	unprocessed_pseudogene	chr1:118030315-118046849
chr1	118030307	118030447	+	MurSatRep1	Unknown	Unknown	chr1	118030314	118030316	+	ENSMUST00000188934.1,ENSMUSG00000100177.1	Gm29489	ENSMUSG00000100177.1	ENSMUST00000188934.1	unprocessed_pseudogene	chr1:118030315-118046849
chr1	118064113	118064253	+	MurSatRep1	Unknown	Unknown	chr1	118064117	118064119	+	ENSMUST00000186304.1,ENSMUSG00000101590.1	Gm29104	ENSMUSG00000101590.1	ENSMUST00000186304.1	unprocessed_pseudogene	chr1:118064118-118064959
chr1	118311715	118311903	+	B2_Mm2	SINE	B2	chr1	118311738	118311740	-	ENSMUST00000186163.1,ENSMUSG00000026374.14	Tsn	ENSMUSG00000026374.14	ENSMUST00000186163.1	protein_coding	chr1:118310681-118311739
chr1	118356647	118358076	+	ORR1B2-int	LTR	ERVL-MaLR	chr1	118357311	118357313	+	ENSMUST00000190194.1,ENSMUSG00000099936.1	Gm28867	ENSMUSG00000099936.1	ENSMUST00000190194.1	lincRNA	chr1:118357312-118363449
chr1	118458738	118458836	+	PB1D9	SINE	Alu	chr1	118458746	118458748	-	ENSMUST00000204125.1,ENSMUSG00000107722.1	2900060B14Rik	ENSMUSG00000107722.1	ENSMUST00000204125.1	antisense	chr1:118458670-118458747
chr1	118554102	118554249	+	B1_Mus1	SINE	Alu	chr1	118554233	118554235	+	ENSMUST00000203870.1,ENSMUSG00000064302.13	Clasp1	ENSMUSG00000064302.13	ENSMUST00000203870.1	protein_coding	chr1:118554234-118556323
chr1	118604501	118604899	-	L1_Mus1	LINE	L1	chr1	118604726	118604728	+	ENSMUST00000187575.2,ENSMUSG00000064302.13	Clasp1	ENSMUSG00000064302.13	ENSMUST00000187575.2	protein_coding	chr1:118604727-118609432
chr1	118681772	118681832	-	MT2A	LTR	ERVL	chr1	118681820	118681822	+	ENSMUST00000157738.1,ENSMUSG00000088363.1	Gm23497	ENSMUSG00000088363.1	ENSMUST00000157738.1	snRNA	chr1:118681821-118681950
chr1	118681820	118681903	+	U1	snRNA	snRNA	chr1	118681820	118681822	+	ENSMUST00000157738.1,ENSMUSG00000088363.1	Gm23497	ENSMUSG00000088363.1	ENSMUST00000157738.1	snRNA	chr1:118681821-118681950
chr1	119058390	119058599	-	B4A	SINE	B4	chr1	119058468	119058470	+	ENSMUST00000181458.1,ENSMUSG00000097408.1	Gm26831	ENSMUSG00000097408.1	ENSMUST00000181458.1	lincRNA	chr1:119058469-119059848
chr1	119530019	119530212	+	B3	SINE	B2	chr1	119530210	119530212	+	ENSMUST00000122556.1,ENSMUSG00000084505.1	Gm25322	ENSMUSG00000084505.1	ENSMUST00000122556.1	snRNA	chr1:119530211-119530314
chr1	119535044	119535361	+	Lx5	LINE	L1	chr1	119535244	119535246	-	ENSMUST00000186206.1,ENSMUSG00000101731.1	3830432H09Rik	ENSMUSG00000101731.1	ENSMUST00000186206.1	lincRNA	chr1:119530293-119535245
chr1	119535950	119536283	+	RLTR14	LTR	ERV1	chr1	119536164	119536166	-	ENSMUST00000188909.1,ENSMUSG00000101731.1	3830432H09Rik	ENSMUSG00000101731.1	ENSMUST00000188909.1	lincRNA	chr1:119529480-119536165
chr1	119599229	119599379	+	RMER20A	LTR	ERVK	chr1	119599239	119599241	-	ENSMUST00000185467.1,ENSMUSG00000026383.14	Epb41l5	ENSMUSG00000026383.14	ENSMUST00000185467.1	protein_coding	chr1:119595442-119599240
chr1	119631669	119631696	+	(A)n	Simple_repeat	Simple_repeat	chr1	119631668	119631670	-	ENSMUST00000192036.1,ENSMUSG00000102687.1	Gm37219	ENSMUSG00000102687.1	ENSMUST00000192036.1	TEC	chr1:119630744-119631669
chr1	119633814	119634008	-	B2_Mm2	SINE	B2	chr1	119633999	119634001	-	ENSMUST00000189042.1,ENSMUSG00000026383.14	Epb41l5	ENSMUSG00000026383.14	ENSMUST00000189042.1	protein_coding	chr1:119617655-119634000
chr1	119793501	119793646	+	B3	SINE	B2	chr1	119793519	119793521	+	ENSMUST00000189807.1,ENSMUSG00000100436.1	Gm29657	ENSMUSG00000100436.1	ENSMUST00000189807.1	processed_pseudogene	chr1:119793520-119794229
chr1	120160330	120160504	+	ID_B1	SINE	B4	chr1	120160479	120160481	+	ENSMUST00000128578.1,ENSMUSG00000026388.15	3110009E18Rik	ENSMUSG00000026388.15	ENSMUST00000128578.1	protein_coding	chr1:120160480-120173566
chr1	120272387	120272848	-	RMER15	LTR	ERVL	chr1	120272704	120272706	-	ENSMUST00000112643.1,ENSMUSG00000026389.16	Steap3	ENSMUSG00000026389.16	ENSMUST00000112643.1	protein_coding	chr1:120226653-120272705
chr1	120435799	120435891	-	L2a	LINE	L2	chr1	120435804	120435806	+	ENSMUST00000186237.1,ENSMUSG00000101275.1	1700012E03Rik	ENSMUSG00000101275.1	ENSMUST00000186237.1	lincRNA	chr1:120435805-120438455
chr1	120856652	120856805	-	RSINE1	SINE	B4	chr1	120856673	120856675	+	ENSMUST00000186695.1,ENSMUSG00000100979.1	Gm29347	ENSMUSG00000100979.1	ENSMUST00000186695.1	lincRNA	chr1:120856674-120858010
chr1	122204956	122205337	+	MTC	LTR	ERVL-MaLR	chr1	122205144	122205146	+	ENSMUST00000185679.1,ENSMUSG00000099960.1	Gm28590	ENSMUSG00000099960.1	ENSMUST00000185679.1	lincRNA	chr1:122205145-122252180
chr1	122510549	122510708	+	U1	snRNA	snRNA	chr1	122510548	122510550	+	ENSMUST00000158649.1,ENSMUSG00000089274.1	Gm24547	ENSMUSG00000089274.1	ENSMUST00000158649.1	snRNA	chr1:122510549-122510697
chr1	122521350	122521820	-	L1_Mus1	LINE	L1	chr1	122521748	122521750	+	ENSMUST00000193796.1,ENSMUSG00000103263.1	Gm36982	ENSMUSG00000103263.1	ENSMUST00000193796.1	TEC	chr1:122521749-122522876
chr1	122865399	122866627	-	L1_Mur1	LINE	L1	chr1	122866041	122866043	+	ENSMUST00000193865.1,ENSMUSG00000104180.1	Gm37970	ENSMUSG00000104180.1	ENSMUST00000193865.1	TEC	chr1:122866042-122867773
chr1	123205068	123205152	-	L1Md_T	LINE	L1	chr1	123205148	123205150	+	ENSMUST00000188837.1,ENSMUSG00000100405.1	Gm28911	ENSMUSG00000100405.1	ENSMUST00000188837.1	processed_pseudogene	chr1:123205149-123205265
chr1	123367073	123367481	+	MTE2a	LTR	ERVL-MaLR	chr1	123367233	123367235	-	ENSMUST00000193624.1,ENSMUSG00000102801.1	Gm37478	ENSMUSG00000102801.1	ENSMUST00000193624.1	TEC	chr1:123363740-123367234
chr1	123460446	123460744	-	MTEa	LTR	ERVL-MaLR	chr1	123460450	123460452	-	ENSMUST00000194773.1,ENSMUSG00000102521.1	Gm37781	ENSMUSG00000102521.1	ENSMUST00000194773.1	TEC	chr1:123457234-123460451
chr1	123469745	123470761	+	L1_Mur3	LINE	L1	chr1	123469943	123469945	-	ENSMUST00000191827.1,ENSMUSG00000104205.1	Gm37396	ENSMUSG00000104205.1	ENSMUST00000191827.1	TEC	chr1:123468450-123469944
chr1	124379186	124379567	-	L1_Mus2	LINE	L1	chr1	124379241	124379243	-	ENSMUST00000195141.1,ENSMUSG00000103914.1	Gm38073	ENSMUSG00000103914.1	ENSMUST00000195141.1	TEC	chr1:124375578-124379242
chr1	124490729	124490868	-	MTC	LTR	ERVL-MaLR	chr1	124490855	124490857	+	ENSMUST00000083406.1,ENSMUSG00000065340.1	Gm25578	ENSMUSG00000065340.1	ENSMUST00000083406.1	snRNA	chr1:124490856-124490959
chr1	124827638	124828235	-	L1_Mus4	LINE	L1	chr1	124827727	124827729	-	ENSMUST00000192647.1,ENSMUSG00000102240.1	Gm37717	ENSMUSG00000102240.1	ENSMUST00000192647.1	TEC	chr1:124824702-124827728
chr1	125197381	125197760	+	ORR1E	LTR	ERVL-MaLR	chr1	125197454	125197456	-	ENSMUST00000187796.1,ENSMUSG00000099574.1	1700121L03Rik	ENSMUSG00000099574.1	ENSMUST00000187796.1	lincRNA	chr1:125190282-125197455
chr1	125408849	125409041	+	Lx7	LINE	L1	chr1	125408940	125408942	-	ENSMUST00000189192.1,ENSMUSG00000026341.16	Actr3	ENSMUSG00000026341.16	ENSMUST00000189192.1	protein_coding	chr1:125405861-125408941
chr1	125435432	125435457	+	(GGGA)n	Simple_repeat	Simple_repeat	chr1	125435453	125435455	-	ENSMUST00000191004.6,ENSMUSG00000026341.16	Actr3	ENSMUSG00000026341.16	ENSMUST00000191004.6	protein_coding	chr1:125407292-125435454
chr1	125435543	125435658	+	C-rich	Low_complexity	Low_complexity	chr1	125435546	125435548	-	ENSMUST00000178474.7,ENSMUSG00000026341.16	Actr3	ENSMUSG00000026341.16	ENSMUST00000178474.7	protein_coding	chr1:125392906-125435547
chr1	125444437	125444670	+	MLT1J	LTR	ERVL-MaLR	chr1	125444566	125444568	+	ENSMUST00000186830.1,ENSMUSG00000102063.1	Gm28706	ENSMUSG00000102063.1	ENSMUST00000186830.1	lincRNA	chr1:125444567-125447398
chr1	125561003	125561035	+	GC_rich	Low_complexity	Low_complexity	chr1	125561015	125561017	+	ENSMUST00000027580.10,ENSMUSG00000026342.10	Slc35f5	ENSMUSG00000026342.10	ENSMUST00000027580.10	protein_coding	chr1:125561016-125595820
chr1	127270108	127270585	+	RMER5	LTR	ERV1	chr1	127270523	127270525	+	ENSMUST00000194151.1,ENSMUSG00000104378.1	Gm37510	ENSMUSG00000104378.1	ENSMUST00000194151.1	TEC	chr1:127270524-127275285
chr1	127406650	127406867	+	ID_B1	SINE	B4	chr1	127406775	127406777	+	ENSMUST00000195573.1,ENSMUSG00000103390.1	Gm38301	ENSMUSG00000103390.1	ENSMUST00000195573.1	TEC	chr1:127406776-127407318
chr1	127923053	127923093	+	(T)n	Simple_repeat	Simple_repeat	chr1	127923072	127923074	+	ENSMUST00000189259.1,ENSMUSG00000036104.12	Rab3gap1	ENSMUSG00000036104.12	ENSMUST00000189259.1	protein_coding	chr1:127923073-127926267
chr1	127959355	127959534	+	G-rich	Low_complexity	Low_complexity	chr1	127959515	127959517	+	ENSMUST00000186230.1,ENSMUSG00000099760.1	Gm28800	ENSMUSG00000099760.1	ENSMUST00000186230.1	antisense	chr1:127959516-127967452
chr1	127984633	127984728	+	RMER5	LTR	ERV1	chr1	127984686	127984688	-	ENSMUST00000193744.1,ENSMUSG00000104164.1	Gm38248	ENSMUSG00000104164.1	ENSMUST00000193744.1	TEC	chr1:127978905-127984687
chr1	128018522	128018833	-	ORR1A1	LTR	ERVL-MaLR	chr1	128018692	128018694	-	ENSMUST00000131732.1,ENSMUSG00000036086.16	Zranb3	ENSMUSG00000036086.16	ENSMUST00000131732.1	protein_coding	chr1:127996853-128018693
chr1	128087162	128089561	+	IAPEy-int	LTR	ERVK	chr1	128089330	128089332	-	ENSMUST00000194969.1,ENSMUSG00000102782.1	Gm37625	ENSMUSG00000102782.1	ENSMUST00000194969.1	TEC	chr1:128084460-128089331
chr1	128132087	128132253	+	MIR	SINE	MIR	chr1	128132156	128132158	+	ENSMUST00000195024.1,ENSMUSG00000104239.1	Gm37588	ENSMUSG00000104239.1	ENSMUST00000195024.1	TEC	chr1:128132157-128134652
chr1	128143575	128143658	+	T-rich	Low_complexity	Low_complexity	chr1	128143613	128143615	+	ENSMUST00000195578.1,ENSMUSG00000102179.1	Gm37868	ENSMUSG00000102179.1	ENSMUST00000195578.1	TEC	chr1:128143614-128146348
chr1	128171626	128171653	+	(T)n	Simple_repeat	Simple_repeat	chr1	128171630	128171632	+	ENSMUST00000187605.1,ENSMUSG00000056211.13	R3hdm1	ENSMUSG00000056211.13	ENSMUST00000187605.1	protein_coding	chr1:128171631-128178143
chr1	128206805	128207002	+	B3	SINE	B2	chr1	128206991	128206993	+	ENSMUST00000190288.1,ENSMUSG00000056211.13	R3hdm1	ENSMUSG00000056211.13	ENSMUST00000190288.1	protein_coding	chr1:128206992-128237735
chr1	128515114	128515218	-	U6	snRNA	snRNA	chr1	128515116	128515118	-	ENSMUST00000188035.1,ENSMUSG00000100941.1	Gm29597	ENSMUSG00000100941.1	ENSMUST00000188035.1	processed_pseudogene	chr1:128514810-128515117
chr1	128773220	128778688	+	L1Md_T	LINE	L1	chr1	128774420	128774422	-	ENSMUST00000181951.1,ENSMUSG00000097283.1	Gm26686	ENSMUSG00000097283.1	ENSMUST00000181951.1	lincRNA	chr1:128770599-128774421
chr1	129273329	129273361	+	GC_rich	Low_complexity	Low_complexity	chr1	129273343	129273345	+	ENSMUST00000073527.12,ENSMUSG00000042581.14	Thsd7b	ENSMUSG00000042581.14	ENSMUST00000073527.12	protein_coding	chr1:129273344-130219278
chr1	129372111	129372370	-	RMER15	LTR	ERVL	chr1	129372303	129372305	+	ENSMUST00000192743.1,ENSMUSG00000103637.1	Gm38330	ENSMUSG00000103637.1	ENSMUST00000192743.1	TEC	chr1:129372304-129373262
chr1	129537438	129537580	+	IMPB_01	Satellite	Satellite	chr1	129537510	129537512	+	ENSMUST00000152305.2,ENSMUSG00000042581.14	Thsd7b	ENSMUSG00000042581.14	ENSMUST00000152305.2	protein_coding	chr1:129537511-129629046
chr1	130437158	130437288	-	L1MC4	LINE	L1	chr1	130437190	130437192	-	ENSMUST00000130486.1,ENSMUSG00000086825.1	Gm15675	ENSMUSG00000086825.1	ENSMUST00000130486.1	lincRNA	chr1:130429781-130437191
chr1	130473392	130473922	-	RLTR1D	LTR	ERV1	chr1	130473742	130473744	+	ENSMUST00000193111.1,ENSMUSG00000103751.1	Gm37283	ENSMUSG00000103751.1	ENSMUST00000193111.1	TEC	chr1:130473743-130475313
chr1	130595675	130596188	+	L1_Mm	LINE	L1	chr1	130595675	130595677	-	ENSMUST00000082461.1,ENSMUSG00000064395.1	Gm23623	ENSMUSG00000064395.1	ENSMUST00000082461.1	snRNA	chr1:130595570-130595676
chr1	130823830	130824169	+	MLT1C	LTR	ERVL-MaLR	chr1	130824083	130824085	-	ENSMUST00000125056.7,ENSMUSG00000086706.7	Gm15848	ENSMUSG00000086706.7	ENSMUST00000125056.7	antisense	chr1:130809977-130824084
chr1	130885881	130886092	+	MLT1A1	LTR	ERVL-MaLR	chr1	130885995	130885997	-	ENSMUST00000187650.6,ENSMUSG00000026420.16	Il24	ENSMUSG00000026420.16	ENSMUST00000187650.6	protein_coding	chr1:130882074-130885996
chr1	131072496	131072574	+	L3	LINE	CR1	chr1	131072525	131072527	-	ENSMUST00000188459.3,ENSMUSG00000016528.10	Mapkapk2	ENSMUSG00000016528.10	ENSMUST00000188459.3	protein_coding	chr1:131056889-131072526
chr1	131276704	131276746	-	MIRc	SINE	MIR	chr1	131276712	131276714	-	ENSMUST00000159195.1,ENSMUSG00000042349.13	Ikbke	ENSMUSG00000042349.13	ENSMUST00000159195.1	protein_coding	chr1:131273791-131276713
chr1	131279571	131279632	+	CT-rich	Low_complexity	Low_complexity	chr1	131279605	131279607	-	ENSMUST00000062108.9,ENSMUSG00000042349.13	Ikbke	ENSMUSG00000042349.13	ENSMUST00000062108.9	protein_coding	chr1:131254597-131279606
chr1	131408992	131409242	+	L1ME3A	LINE	L1	chr1	131409212	131409214	-	ENSMUST00000191427.1,ENSMUSG00000101778.1	Gm29488	ENSMUSG00000101778.1	ENSMUST00000191427.1	sense_intronic	chr1:131406812-131409213
chr1	131498408	131499281	-	MMAR1	DNA	TcMar-Mariner	chr1	131498801	131498803	-	ENSMUST00000102332.1,ENSMUSG00000076287.1	Gm24273	ENSMUSG00000076287.1	ENSMUST00000102332.1	miRNA	chr1:131498639-131498802
chr1	131504252	131504413	-	L2c	LINE	L2	chr1	131504365	131504367	-	ENSMUST00000187273.2,ENSMUSG00000026425.15	Srgap2	ENSMUSG00000026425.15	ENSMUST00000187273.2	protein_coding	chr1:131436675-131504366
chr1	131599620	131599730	+	C-rich	Low_complexity	Low_complexity	chr1	131599722	131599724	+	ENSMUST00000190410.1,ENSMUSG00000026432.7	Avpr1b	ENSMUSG00000026432.7	ENSMUST00000190410.1	protein_coding	chr1:131599723-131609754
chr1	131638315	131638509	-	MIR	SINE	MIR	chr1	131638493	131638495	+	ENSMUST00000112411.1,ENSMUSG00000004552.16	Ctse	ENSMUSG00000004552.16	ENSMUST00000112411.1	protein_coding	chr1:131638494-131675503
chr1	131914347	131914539	-	B2_Mm2	SINE	B2	chr1	131914528	131914530	+	ENSMUST00000192346.1,ENSMUSG00000103569.1	Gm38067	ENSMUSG00000103569.1	ENSMUST00000192346.1	TEC	chr1:131914529-131916439
chr1	131932947	131932970	+	(TAAA)n	Simple_repeat	Simple_repeat	chr1	131932969	131932971	-	ENSMUST00000195496.1,ENSMUSG00000103975.1	Gm37676	ENSMUSG00000103975.1	ENSMUST00000195496.1	TEC	chr1:131932464-131932970
chr1	132100638	132100754	+	U6	snRNA	snRNA	chr1	132100638	132100640	+	ENSMUST00000158154.1,ENSMUSG00000088779.1	Gm26034	ENSMUSG00000088779.1	ENSMUST00000158154.1	snRNA	chr1:132100639-132100754
chr1	132191400	132191468	+	G-rich	Low_complexity	Low_complexity	chr1	132191430	132191432	+	ENSMUST00000188169.6,ENSMUSG00000079330.8	Lemd1	ENSMUSG00000079330.8	ENSMUST00000188169.6	protein_coding	chr1:132191431-132259227
chr1	132191400	132191468	+	G-rich	Low_complexity	Low_complexity	chr1	132191454	132191456	+	ENSMUST00000112357.8,ENSMUSG00000079330.8	Lemd1	ENSMUSG00000079330.8	ENSMUST00000112357.8	protein_coding	chr1:132191455-132257382
chr1	132191400	132191468	+	G-rich	Low_complexity	Low_complexity	chr1	132191456	132191458	+	ENSMUST00000188175.1,ENSMUSG00000079330.8	Lemd1	ENSMUSG00000079330.8	ENSMUST00000188175.1	protein_coding	chr1:132191457-132209546
chr1	132418369	132418405	+	(TTG)n	Simple_repeat	Simple_repeat	chr1	132418376	132418378	+	ENSMUST00000188973.1,ENSMUSG00000042046.15	Dstyk	ENSMUSG00000042046.15	ENSMUST00000188973.1	protein_coding	chr1:132418377-132434148
chr1	132454450	132454590	+	B1_Mus2	SINE	Alu	chr1	132454574	132454576	+	ENSMUST00000188006.1,ENSMUSG00000042046.15	Dstyk	ENSMUSG00000042046.15	ENSMUST00000188006.1	protein_coding	chr1:132454575-132457639
chr1	132506765	132506914	-	B1_Mur3	SINE	Alu	chr1	132506888	132506890	+	ENSMUST00000188789.1,ENSMUSG00000048174.2	Tmem81	ENSMUSG00000048174.2	ENSMUST00000188789.1	protein_coding	chr1:132506889-132508639
chr1	132624470	132624562	+	L1MEg	LINE	L1	chr1	132624511	132624513	-	ENSMUST00000191294.1,ENSMUSG00000026442.14	Nfasc	ENSMUSG00000026442.14	ENSMUST00000191294.1	protein_coding	chr1:132619380-132624512
chr1	132741797	132741849	+	GC_rich	Low_complexity	Low_complexity	chr1	132741796	132741798	-	ENSMUST00000188307.1,ENSMUSG00000026442.14	Nfasc	ENSMUSG00000026442.14	ENSMUST00000188307.1	protein_coding	chr1:132599835-132741797
chr1	132814309	132814389	-	B3	SINE	B2	chr1	132814347	132814349	-	ENSMUST00000158286.1,ENSMUSG00000088911.1	Gm22609	ENSMUSG00000088911.1	ENSMUST00000158286.1	snoRNA	chr1:132814228-132814348
chr1	132923613	132923756	-	MLT1C	LTR	ERVL-MaLR	chr1	132923743	132923745	-	ENSMUST00000196792.1,ENSMUSG00000106377.1	Gm44300	ENSMUSG00000106377.1	ENSMUST00000196792.1	miRNA	chr1:132923624-132923744
chr1	133025679	133025823	+	B1_Mm	SINE	Alu	chr1	133025800	133025802	+	ENSMUST00000186115.1,ENSMUSG00000100228.1	Gm29257	ENSMUSG00000100228.1	ENSMUST00000186115.1	processed_pseudogene	chr1:133025801-133026439
chr1	133030397	133030806	-	RMER4A	LTR	ERVK	chr1	133030560	133030562	-	ENSMUST00000190807.1,ENSMUSG00000054387.13	Mdm4	ENSMUSG00000054387.13	ENSMUST00000190807.1	protein_coding	chr1:133009151-133030561
chr1	133291656	133291838	-	MLT1C-int	LTR	ERVL-MaLR	chr1	133291749	133291751	+	ENSMUST00000190884.1,ENSMUSG00000041757.16	Plekha6	ENSMUSG00000041757.16	ENSMUST00000190884.1	protein_coding	chr1:133291750-133294226
chr1	133350196	133350598	-	RMER17B2	LTR	ERVK	chr1	133350509	133350511	+	ENSMUST00000094556.2,ENSMUSG00000070645.5	Ren1	ENSMUSG00000070645.5	ENSMUST00000094556.2	protein_coding	chr1:133350510-133360325
chr1	133351849	133351951	+	MIRb	SINE	MIR	chr1	133351908	133351910	+	ENSMUST00000112287.1,ENSMUSG00000070645.5	Ren1	ENSMUSG00000070645.5	ENSMUST00000112287.1	protein_coding	chr1:133351909-133354276
chr1	133701851	133701928	+	(TCC)n	Simple_repeat	Simple_repeat	chr1	133701880	133701882	-	ENSMUST00000167348.1,ENSMUSG00000026463.17	Atp2b4	ENSMUSG00000026463.17	ENSMUST00000167348.1	protein_coding	chr1:133701639-133701881
chr1	133921414	133921517	+	G-rich	Low_complexity	Low_complexity	chr1	133921413	133921415	-	ENSMUST00000048432.5,ENSMUSG00000041577.5	Prelp	ENSMUSG00000041577.5	ENSMUST00000048432.5	protein_coding	chr1:133910304-133921414
chr1	134111126	134111442	+	ORR1A4	LTR	ERVL-MaLR	chr1	134111241	134111243	+	ENSMUST00000159963.7,ENSMUSG00000026450.14	Chit1	ENSMUSG00000026450.14	ENSMUST00000159963.7	protein_coding	chr1:134111242-134151540
chr1	134111126	134111442	+	ORR1A4	LTR	ERVL-MaLR	chr1	134111241	134111243	+	ENSMUST00000160060.7,ENSMUSG00000026450.14	Chit1	ENSMUSG00000026450.14	ENSMUST00000160060.7	protein_coding	chr1:134111242-134151540
chr1	134280897	134280991	-	U6	snRNA	snRNA	chr1	134280990	134280992	-	ENSMUST00000122560.1,ENSMUSG00000096676.1	Gm24517	ENSMUSG00000096676.1	ENSMUST00000122560.1	snRNA	chr1:134280885-134280991
chr1	134304613	134304817	+	MTEa	LTR	ERVL-MaLR	chr1	134304807	134304809	-	ENSMUST00000189862.6,ENSMUSG00000026458.13	Ppfia4	ENSMUSG00000026458.13	ENSMUST00000189862.6	protein_coding	chr1:134296789-134304808
chr1	134361675	134361770	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	134361689	134361691	-	ENSMUST00000185903.1,ENSMUSG00000042305.12	Tmem183a	ENSMUSG00000042305.12	ENSMUST00000185903.1	protein_coding	chr1:134355708-134361690
chr1	134405270	134405591	+	RLTRETN_Mm	LTR	ERVK	chr1	134405558	134405560	+	ENSMUST00000186489.6,ENSMUSG00000026456.18	Cyb5r1	ENSMUSG00000026456.18	ENSMUST00000186489.6	protein_coding	chr1:134405559-134407990
chr1	134435490	134435689	-	B3	SINE	B2	chr1	134435627	134435629	+	ENSMUST00000188474.1,ENSMUSG00000101061.1	Platr1	ENSMUSG00000101061.1	ENSMUST00000188474.1	lincRNA	chr1:134435628-134439597
chr1	134468842	134468892	+	(T)n	Simple_repeat	Simple_repeat	chr1	134468878	134468880	+	ENSMUST00000189981.1,ENSMUSG00000026455.14	Klhl12	ENSMUSG00000026455.14	ENSMUST00000189981.1	protein_coding	chr1:134468879-134473868
chr1	134646505	134646636	+	C-rich	Low_complexity	Low_complexity	chr1	134646519	134646521	-	ENSMUST00000181197.1,ENSMUSG00000097435.1	Gm26783	ENSMUSG00000097435.1	ENSMUST00000181197.1	lincRNA	chr1:134642254-134646520
chr1	134783291	134783317	+	(CCCA)n	Simple_repeat	Simple_repeat	chr1	134783296	134783298	-	ENSMUST00000191540.1,ENSMUSG00000073557.11	Ppp1r12b	ENSMUSG00000073557.11	ENSMUST00000191540.1	protein_coding	chr1:134780947-134783297
chr1	135150686	135150767	-	5S	rRNA	rRNA	chr1	135150765	135150767	-	ENSMUST00000157096.1,ENSMUSG00000087721.1	Gm26280	ENSMUSG00000087721.1	ENSMUST00000157096.1	rRNA	chr1:135150666-135150766
chr1	135279824	135280004	+	B2_Mm2	SINE	B2	chr1	135279914	135279916	-	ENSMUST00000189615.1,ENSMUSG00000041926.15	Rnpep	ENSMUSG00000041926.15	ENSMUST00000189615.1	protein_coding	chr1:135277641-135279915
chr1	135353717	135353822	-	U6	snRNA	snRNA	chr1	135353821	135353823	-	ENSMUST00000157234.1,ENSMUSG00000087859.1	Gm22796	ENSMUSG00000087859.1	ENSMUST00000157234.1	snRNA	chr1:135353717-135353822
chr1	135414087	135414576	+	L1M2	LINE	L1	chr1	135414185	135414187	-	ENSMUST00000187450.1,ENSMUSG00000100620.1	Gm28277	ENSMUSG00000100620.1	ENSMUST00000187450.1	sense_intronic	chr1:135409622-135414186
chr1	135453777	135453990	-	Tigger5b	DNA	TcMar-Tigger	chr1	135453906	135453908	-	ENSMUST00000187311.1,ENSMUSG00000009418.15	Nav1	ENSMUSG00000009418.15	ENSMUST00000187311.1	protein_coding	chr1:135452375-135453907
chr1	135782933	135783077	-	MIRc	SINE	MIR	chr1	135783064	135783066	+	ENSMUST00000132795.7,ENSMUSG00000026418.16	Tnni1	ENSMUSG00000026418.16	ENSMUST00000132795.7	protein_coding	chr1:135783065-135805622
chr1	136117252	136117330	+	MER5B	DNA	hAT-Charlie	chr1	136117255	136117257	+	ENSMUST00000159106.1,ENSMUSG00000026407.17	Cacna1s	ENSMUSG00000026407.17	ENSMUST00000159106.1	protein_coding	chr1:136117256-136119529
chr1	136255756	136255955	-	MIRc	SINE	MIR	chr1	136255845	136255847	-	ENSMUST00000193939.1,ENSMUSG00000102941.1	Gm37552	ENSMUSG00000102941.1	ENSMUST00000193939.1	lincRNA	chr1:136252671-136255846
chr1	136259243	136259408	+	G-rich	Low_complexity	Low_complexity	chr1	136259406	136259408	+	ENSMUST00000181385.1,ENSMUSG00000097433.1	Gm26781	ENSMUSG00000097433.1	ENSMUST00000181385.1	antisense	chr1:136259407-136274406
chr1	136697373	136697466	+	U6	snRNA	snRNA	chr1	136697373	136697375	+	ENSMUST00000175171.1,ENSMUSG00000092912.1	Gm24086	ENSMUSG00000092912.1	ENSMUST00000175171.1	snRNA	chr1:136697374-136697471
chr1	136757291	136757678	-	MTA_Mm	LTR	ERVL-MaLR	chr1	136757608	136757610	-	ENSMUST00000175316.2,ENSMUSG00000096432.1	Gm22132	ENSMUSG00000096432.1	ENSMUST00000175316.2	miRNA	chr1:136757510-136757609
chr1	136990205	136990270	-	U7	snRNA	snRNA	chr1	136990269	136990271	-	ENSMUST00000158345.1,ENSMUSG00000088970.1	Gm23763	ENSMUSG00000088970.1	ENSMUST00000158345.1	snRNA	chr1:136990211-136990270
chr1	137215545	137215647	-	U6	snRNA	snRNA	chr1	137215646	137215648	-	ENSMUST00000104019.1,ENSMUSG00000077207.1	Gm25609	ENSMUSG00000077207.1	ENSMUST00000104019.1	snRNA	chr1:137215544-137215647
chr1	137526861	137532119	+	L1Md_T	LINE	L1	chr1	137531229	137531231	-	ENSMUST00000192122.1,ENSMUSG00000103070.1	Gm37903	ENSMUSG00000103070.1	ENSMUST00000192122.1	TEC	chr1:137528850-137531230
chr1	137971067	137971185	+	(TTTC)n	Simple_repeat	Simple_repeat	chr1	137971173	137971175	+	ENSMUST00000191811.1,ENSMUSG00000104197.1	Gm37632	ENSMUSG00000104197.1	ENSMUST00000191811.1	TEC	chr1:137971174-137972315
chr1	137987776	137987799	+	AT_rich	Low_complexity	Low_complexity	chr1	137987775	137987777	-	ENSMUST00000157939.1,ENSMUSG00000088564.1	Gm23782	ENSMUSG00000088564.1	ENSMUST00000157939.1	rRNA	chr1:137987657-137987776
chr1	138175157	138175246	+	L3	LINE	CR1	chr1	138175233	138175235	-	ENSMUST00000195533.5,ENSMUSG00000026395.16	Ptprc	ENSMUSG00000026395.16	ENSMUST00000195533.5	protein_coding	chr1:138112252-138175234
chr1	138175157	138175246	+	L3	LINE	CR1	chr1	138175188	138175190	-	ENSMUST00000185570.1,ENSMUSG00000026395.16	Ptprc	ENSMUSG00000026395.16	ENSMUST00000185570.1	protein_coding	chr1:138171977-138175189
chr1	138183604	138184106	+	Lx2B2	LINE	L1	chr1	138184100	138184102	+	ENSMUST00000186523.2,ENSMUSG00000099656.2	Gm18667	ENSMUSG00000099656.2	ENSMUST00000186523.2	processed_pseudogene	chr1:138184101-138184584
chr1	138554519	138554708	-	B3	SINE	B2	chr1	138554707	138554709	-	ENSMUST00000194804.1,ENSMUSG00000102651.1	Gm37080	ENSMUSG00000102651.1	ENSMUST00000194804.1	TEC	chr1:138552305-138554708
chr1	138833620	138833709	+	(GA)n	Simple_repeat	Simple_repeat	chr1	138833658	138833660	-	ENSMUST00000192425.1,ENSMUSG00000019230.14	Lhx9	ENSMUSG00000019230.14	ENSMUST00000192425.1	protein_coding	chr1:138831714-138833659
chr1	138847655	138847788	+	(TC)n	Simple_repeat	Simple_repeat	chr1	138847718	138847720	-	ENSMUST00000046870.12,ENSMUSG00000019230.14	Lhx9	ENSMUSG00000019230.14	ENSMUST00000046870.12	protein_coding	chr1:138829146-138847719
chr1	138856822	138856910	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	138856851	138856853	-	ENSMUST00000112025.2,ENSMUSG00000079283.2	2310009B15Rik	ENSMUSG00000079283.2	ENSMUST00000112025.2	protein_coding	chr1:138851983-138856852
chr1	138856822	138856910	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	138856846	138856848	-	ENSMUST00000193374.1,ENSMUSG00000079283.2	2310009B15Rik	ENSMUSG00000079283.2	ENSMUST00000193374.1	protein_coding	chr1:138852033-138856847
chr1	138878286	138878377	-	5S	rRNA	rRNA	chr1	138878376	138878378	-	ENSMUST00000083341.1,ENSMUSG00000065275.1	n-R5s217	ENSMUSG00000065275.1	ENSMUST00000083341.1	rRNA	chr1:138878262-138878377
chr1	138963707	138963736	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr1	138963708	138963710	+	ENSMUST00000168527.7,ENSMUSG00000056268.15	Dennd1b	ENSMUSG00000056268.15	ENSMUST00000168527.7	protein_coding	chr1:138963709-139176043
chr1	138963707	138963736	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr1	138963727	138963729	+	ENSMUST00000198759.4,ENSMUSG00000056268.15	Dennd1b	ENSMUSG00000056268.15	ENSMUST00000198759.4	protein_coding	chr1:138963728-139085928
chr1	138968404	138968528	-	B1F1	SINE	Alu	chr1	138968509	138968511	+	ENSMUST00000194246.1,ENSMUSG00000104436.1	Gm37423	ENSMUSG00000104436.1	ENSMUST00000194246.1	processed_transcript	chr1:138968510-138971851
chr1	138992052	138992078	+	(CAAG)n	Simple_repeat	Simple_repeat	chr1	138992068	138992070	-	ENSMUST00000140747.2,ENSMUSG00000085361.2	Gm16305	ENSMUSG00000085361.2	ENSMUST00000140747.2	processed_pseudogene	chr1:138991514-138992069
chr1	139116513	139122778	-	L1Md_T	LINE	L1	chr1	139121754	139121756	+	ENSMUST00000200295.4,ENSMUSG00000056268.15	Dennd1b	ENSMUSG00000056268.15	ENSMUST00000200295.4	protein_coding	chr1:139121755-139174094
chr1	139116513	139122778	-	L1Md_T	LINE	L1	chr1	139121754	139121756	+	ENSMUST00000199634.1,ENSMUSG00000056268.15	Dennd1b	ENSMUSG00000056268.15	ENSMUST00000199634.1	protein_coding	chr1:139121755-139175983
chr1	139154748	139155245	+	L1Md_T	LINE	L1	chr1	139155151	139155153	+	ENSMUST00000191655.1,ENSMUSG00000102243.1	Gm37718	ENSMUSG00000102243.1	ENSMUST00000191655.1	TEC	chr1:139155152-139157782
chr1	139378873	139379693	-	RMER1A	Other	Other	chr1	139379451	139379453	+	ENSMUST00000192824.1,ENSMUSG00000103844.1	4933436E23Rik	ENSMUSG00000103844.1	ENSMUST00000192824.1	lincRNA	chr1:139379452-139402852
chr1	139408134	139408526	+	MTC	LTR	ERVL-MaLR	chr1	139408277	139408279	+	ENSMUST00000193363.1,ENSMUSG00000102661.1	Gm34816	ENSMUSG00000102661.1	ENSMUST00000193363.1	lincRNA	chr1:139408278-139413864
chr1	139483318	139483703	+	MTB	LTR	ERVL-MaLR	chr1	139483525	139483527	+	ENSMUST00000196272.1,ENSMUSG00000033952.14	Aspm	ENSMUSG00000033952.14	ENSMUST00000196272.1	protein_coding	chr1:139483526-139487396
chr1	139671603	139671705	+	U6	snRNA	snRNA	chr1	139671603	139671605	+	ENSMUST00000158349.1,ENSMUSG00000096117.1	Gm26271	ENSMUSG00000096117.1	ENSMUST00000158349.1	snRNA	chr1:139671604-139671707
chr1	139786982	139787084	+	U6	snRNA	snRNA	chr1	139786982	139786984	+	ENSMUST00000122621.1,ENSMUSG00000095393.1	Gm25619	ENSMUSG00000095393.1	ENSMUST00000122621.1	snRNA	chr1:139786983-139787086
chr1	140003609	140003869	+	L1_Mur3	LINE	L1	chr1	140003824	140003826	+	ENSMUST00000157305.1,ENSMUSG00000087930.1	Gm26048	ENSMUSG00000087930.1	ENSMUST00000157305.1	snoRNA	chr1:140003825-140003966
chr1	140656352	140656693	+	IAPEY_LTR	LTR	ERVK	chr1	140656403	140656405	-	ENSMUST00000193820.1,ENSMUSG00000102368.1	4930590L20Rik	ENSMUSG00000102368.1	ENSMUST00000193820.1	antisense	chr1:140570176-140656404
chr1	140817161	140823568	+	IAPEz-int	LTR	ERVK	chr1	140823326	140823328	+	ENSMUST00000194837.1,ENSMUSG00000102500.1	Gm37371	ENSMUSG00000102500.1	ENSMUST00000194837.1	TEC	chr1:140823327-140823718
chr1	141298099	141298206	+	U6	snRNA	snRNA	chr1	141298099	141298101	+	ENSMUST00000179509.1,ENSMUSG00000093879.1	Gm25457	ENSMUSG00000093879.1	ENSMUST00000179509.1	snRNA	chr1:141298100-141298206
chr1	141314354	141314460	+	HY1	scRNA	scRNA	chr1	141314354	141314356	+	ENSMUST00000158793.2,ENSMUSG00000089418.2	Gm22016	ENSMUSG00000089418.2	ENSMUST00000158793.2	misc_RNA	chr1:141314355-141314468
chr1	141543816	141548139	-	MMERVK9E_I-int	LTR	ERVK	chr1	141546205	141546207	+	ENSMUST00000191749.1,ENSMUSG00000103858.1	Gm37604	ENSMUSG00000103858.1	ENSMUST00000191749.1	TEC	chr1:141546206-141547477
chr1	143636017	143637161	+	ORR1A4-int	LTR	ERVL-MaLR	chr1	143636576	143636578	-	ENSMUST00000188838.1,ENSMUSG00000026361.9	Cdc73	ENSMUSG00000026361.9	ENSMUST00000188838.1	protein_coding	chr1:143633851-143636577
chr1	143711067	143717187	-	L1Md_T	LINE	L1	chr1	143716337	143716339	+	ENSMUST00000185367.1,ENSMUSG00000018196.18	Glrx2	ENSMUSG00000018196.18	ENSMUST00000185367.1	protein_coding	chr1:143716338-143746774
chr1	143777029	143777078	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	143777067	143777069	-	ENSMUST00000159879.1,ENSMUSG00000018199.9	Trove2	ENSMUSG00000018199.9	ENSMUST00000159879.1	protein_coding	chr1:143750790-143777068
chr1	144609049	144609110	-	U4	snRNA	snRNA	chr1	144609109	144609111	-	ENSMUST00000157471.1,ENSMUSG00000088096.1	Gm23672	ENSMUSG00000088096.1	ENSMUST00000157471.1	snRNA	chr1:144609004-144609110
chr1	144979312	144979613	-	MTA_Mm	LTR	ERVL-MaLR	chr1	144979584	144979586	-	ENSMUST00000177687.1,ENSMUSG00000096352.1	Gm25708	ENSMUSG00000096352.1	ENSMUST00000177687.1	miRNA	chr1:144979484-144979585
chr1	146482027	146482394	+	RLTR45	LTR	ERVK	chr1	146482354	146482356	-	ENSMUST00000195609.1,ENSMUSG00000102403.1	Gm38187	ENSMUSG00000102403.1	ENSMUST00000195609.1	TEC	chr1:146477647-146482355
chr1	146805792	146806250	-	IAPLTR2_Mm	LTR	ERVK	chr1	146806021	146806023	-	ENSMUST00000126596.1,ENSMUSG00000087627.2	A230059L01Rik	ENSMUSG00000087627.2	ENSMUST00000126596.1	processed_transcript	chr1:146802965-146806022
chr1	146807145	146807345	-	L1M2	LINE	L1	chr1	146807339	146807341	-	ENSMUST00000191937.1,ENSMUSG00000087627.2	A230059L01Rik	ENSMUSG00000087627.2	ENSMUST00000191937.1	processed_transcript	chr1:146804601-146807340
chr1	147989997	147990260	+	L1_Mur2	LINE	L1	chr1	147990084	147990086	+	ENSMUST00000190402.1,ENSMUSG00000101973.1	Gm29516	ENSMUSG00000101973.1	ENSMUST00000190402.1	processed_pseudogene	chr1:147990085-147990552
chr1	148248367	148248546	+	(GA)n	Simple_repeat	Simple_repeat	chr1	148248377	148248379	-	ENSMUST00000188273.1,ENSMUSG00000099629.1	Gm29515	ENSMUSG00000099629.1	ENSMUST00000188273.1	lincRNA	chr1:148234517-148248378
chr1	148651017	148651384	-	RLTR17	LTR	ERVK	chr1	148651133	148651135	-	ENSMUST00000187360.1,ENSMUSG00000101735.1	Gm18505	ENSMUSG00000101735.1	ENSMUST00000187360.1	processed_pseudogene	chr1:148650345-148651134
chr1	149433883	149434733	-	Lx2	LINE	L1	chr1	149433966	149433968	-	ENSMUST00000192317.1,ENSMUSG00000103724.1	Gm37096	ENSMUSG00000103724.1	ENSMUST00000192317.1	TEC	chr1:149431910-149433967
chr1	149437047	149440026	+	L1_Mus4	LINE	L1	chr1	149437326	149437328	-	ENSMUST00000194120.1,ENSMUSG00000104036.1	Gm37775	ENSMUSG00000104036.1	ENSMUST00000194120.1	TEC	chr1:149435015-149437327
chr1	149707377	149707482	-	U6	snRNA	snRNA	chr1	149707481	149707483	-	ENSMUST00000157542.1,ENSMUSG00000088167.1	Gm23535	ENSMUSG00000088167.1	ENSMUST00000157542.1	snRNA	chr1:149707377-149707482
chr1	149734848	149736240	+	Lx6	LINE	L1	chr1	149734857	149734859	-	ENSMUST00000122583.1,ENSMUSG00000084532.1	n-R5s218	ENSMUSG00000084532.1	ENSMUST00000122583.1	rRNA	chr1:149734750-149734858
chr1	150063222	150063435	-	RMER1B	Other	Other	chr1	150063267	150063269	-	ENSMUST00000197469.1,ENSMUSG00000104812.1	Gm44329	ENSMUSG00000104812.1	ENSMUST00000197469.1	miRNA	chr1:150063157-150063268
chr1	150346583	150346932	-	ORR1D2	LTR	ERVL-MaLR	chr1	150346770	150346772	-	ENSMUST00000186460.1,ENSMUSG00000099447.1	2310030A07Rik	ENSMUSG00000099447.1	ENSMUST00000186460.1	antisense	chr1:150320681-150346771
chr1	150565479	150565619	+	B1_Mm	SINE	Alu	chr1	150565603	150565605	-	ENSMUST00000151899.1,ENSMUSG00000066842.18	Hmcn1	ENSMUSG00000066842.18	ENSMUST00000151899.1	protein_coding	chr1:150563711-150565604
chr1	150624836	150625406	-	L1MB7	LINE	L1	chr1	150625265	150625267	+	ENSMUST00000177239.2,ENSMUSG00000093650.2	Gm20631	ENSMUSG00000093650.2	ENSMUST00000177239.2	antisense	chr1:150625266-150668475
chr1	150624836	150625406	-	L1MB7	LINE	L1	chr1	150625298	150625300	+	ENSMUST00000177268.1,ENSMUSG00000093650.2	Gm20631	ENSMUSG00000093650.2	ENSMUST00000177268.1	antisense	chr1:150625299-150783499
chr1	151062003	151062110	-	U6	snRNA	snRNA	chr1	151062109	151062111	-	ENSMUST00000180118.1,ENSMUSG00000096851.1	Gm22756	ENSMUSG00000096851.1	ENSMUST00000180118.1	snRNA	chr1:151062004-151062110
chr1	151260873	151260914	-	U2	snRNA	snRNA	chr1	151260913	151260915	-	ENSMUST00000157873.1,ENSMUSG00000088498.1	Gm24402	ENSMUSG00000088498.1	ENSMUST00000157873.1	snRNA	chr1:151260824-151260914
chr1	151260914	151261470	+	L2a	LINE	L2	chr1	151260913	151260915	-	ENSMUST00000157873.1,ENSMUSG00000088498.1	Gm24402	ENSMUSG00000088498.1	ENSMUST00000157873.1	snRNA	chr1:151260824-151260914
chr1	151344458	151344551	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	151344476	151344478	+	ENSMUST00000023918.12,ENSMUSG00000023150.14	Ivns1abp	ENSMUSG00000023150.14	ENSMUST00000023918.12	protein_coding	chr1:151344477-151364422
chr1	151344458	151344551	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	151344508	151344510	+	ENSMUST00000111887.9,ENSMUSG00000023150.14	Ivns1abp	ENSMUSG00000023150.14	ENSMUST00000111887.9	protein_coding	chr1:151344509-151356799
chr1	151344458	151344551	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	151344517	151344519	+	ENSMUST00000097543.7,ENSMUSG00000023150.14	Ivns1abp	ENSMUSG00000023150.14	ENSMUST00000097543.7	protein_coding	chr1:151344518-151364415
chr1	151412966	151415046	-	L1_Mus3	LINE	L1	chr1	151412978	151412980	-	ENSMUST00000138095.1,ENSMUSG00000052748.14	Swt1	ENSMUSG00000052748.14	ENSMUST00000138095.1	protein_coding	chr1:151411158-151412979
chr1	151550926	151551135	-	MER126	DNA	DNA	chr1	151550942	151550944	-	ENSMUST00000191460.1,ENSMUSG00000100357.1	Gm28181	ENSMUSG00000100357.1	ENSMUST00000191460.1	lincRNA	chr1:151549245-151550943
chr1	151854884	151854955	-	U4	snRNA	snRNA	chr1	151854954	151854956	-	ENSMUST00000122608.1,ENSMUSG00000084557.1	Gm25279	ENSMUSG00000084557.1	ENSMUST00000122608.1	snRNA	chr1:151854823-151854955
chr1	152055230	152055466	-	ORR1F	LTR	ERVL-MaLR	chr1	152055291	152055293	-	ENSMUST00000121533.2,ENSMUSG00000032666.16	1700025G04Rik	ENSMUSG00000032666.16	ENSMUST00000121533.2	protein_coding	chr1:151893237-152055292
chr1	152384031	152384143	-	MER2	DNA	TcMar-Tigger	chr1	152384091	152384093	-	ENSMUST00000159717.1,ENSMUSG00000014980.14	Tsen15	ENSMUSG00000014980.14	ENSMUST00000159717.1	protein_coding	chr1:152371775-152384092
chr1	152799848	152800281	+	RMER10A	LTR	ERVL	chr1	152800193	152800195	+	ENSMUST00000186568.6,ENSMUSG00000026480.12	Ncf2	ENSMUSG00000026480.12	ENSMUST00000186568.6	protein_coding	chr1:152800194-152836991
chr1	152822700	152823627	+	Lx8	LINE	L1	chr1	152823568	152823570	+	ENSMUST00000187235.1,ENSMUSG00000026480.12	Ncf2	ENSMUSG00000026480.12	ENSMUST00000187235.1	protein_coding	chr1:152823569-152824484
chr1	153089331	153089523	+	B2_Mm1t	SINE	B2	chr1	153089506	153089508	-	ENSMUST00000190117.1,ENSMUSG00000099969.1	Gm28960	ENSMUSG00000099969.1	ENSMUST00000190117.1	antisense	chr1:153066481-153089507
chr1	153407677	153408072	-	RLTR10A	LTR	ERVK	chr1	153407789	153407791	-	ENSMUST00000186785.6,ENSMUSG00000073538.10	E330020D12Rik	ENSMUSG00000073538.10	ENSMUST00000186785.6	processed_transcript	chr1:153404827-153407790
chr1	153414132	153414446	-	RLTR27	LTR	ERVK	chr1	153414232	153414234	-	ENSMUST00000188717.1,ENSMUSG00000073538.10	E330020D12Rik	ENSMUSG00000073538.10	ENSMUST00000188717.1	processed_transcript	chr1:153406247-153414233
chr1	153443142	153443764	-	RLTR40	LTR	ERVK	chr1	153443480	153443482	+	ENSMUST00000192184.1,ENSMUSG00000103543.1	Gm37669	ENSMUSG00000103543.1	ENSMUST00000192184.1	TEC	chr1:153443481-153444300
chr1	153480470	153480615	+	B3	SINE	B2	chr1	153480549	153480551	-	ENSMUST00000190383.1,ENSMUSG00000042699.11	Dhx9	ENSMUSG00000042699.11	ENSMUST00000190383.1	protein_coding	chr1:153478277-153480550
chr1	153664559	153664641	-	MER5A	DNA	hAT-Charlie	chr1	153664615	153664617	+	ENSMUST00000111815.7,ENSMUSG00000042671.12	Rgs8	ENSMUSG00000042671.12	ENSMUST00000111815.7	protein_coding	chr1:153664616-153692985
chr1	153713802	153715637	+	ORR1A2-int	LTR	ERVL-MaLR	chr1	153714653	153714655	+	ENSMUST00000193511.1,ENSMUSG00000102404.1	5530400K19Rik	ENSMUSG00000102404.1	ENSMUST00000193511.1	TEC	chr1:153714654-153716569
chr1	153749307	153749588	+	MER90	LTR	ERV1	chr1	153749323	153749325	-	ENSMUST00000191474.1,ENSMUSG00000099568.1	Gm28513	ENSMUSG00000099568.1	ENSMUST00000191474.1	antisense	chr1:153743552-153749324
chr1	153749307	153749588	+	MER90	LTR	ERV1	chr1	153749425	153749427	+	ENSMUST00000086209.9,ENSMUSG00000066800.11	Rnasel	ENSMUSG00000066800.11	ENSMUST00000086209.9	protein_coding	chr1:153749426-153762401
chr1	153749307	153749588	+	MER90	LTR	ERV1	chr1	153749503	153749505	+	ENSMUST00000182722.7,ENSMUSG00000066800.11	Rnasel	ENSMUSG00000066800.11	ENSMUST00000182722.7	protein_coding	chr1:153749504-153760830
chr1	153813728	153813864	+	B1_Mus1	SINE	Alu	chr1	153813837	153813839	-	ENSMUST00000206321.1,ENSMUSG00000042641.18	Rgsl1	ENSMUSG00000042641.18	ENSMUST00000206321.1	protein_coding	chr1:153799794-153813838
chr1	153938870	153939364	+	MT2_Mm	LTR	ERVL	chr1	153939225	153939227	+	ENSMUST00000185385.1,ENSMUSG00000100014.1	Gm29290	ENSMUSG00000100014.1	ENSMUST00000185385.1	lincRNA	chr1:153939226-153941290
chr1	154005910	154006346	-	L1MC3	LINE	L1	chr1	154006216	154006218	-	ENSMUST00000188927.1,ENSMUSG00000101903.1	Gm29291	ENSMUSG00000101903.1	ENSMUST00000188927.1	lincRNA	chr1:154003396-154006217
chr1	154005910	154006346	-	L1MC3	LINE	L1	chr1	154006220	154006222	-	ENSMUST00000186055.1,ENSMUSG00000101903.1	Gm29291	ENSMUSG00000101903.1	ENSMUST00000186055.1	lincRNA	chr1:154003552-154006221
chr1	154311515	154311900	+	L1_Mus4	LINE	L1	chr1	154311526	154311528	-	ENSMUST00000082926.1,ENSMUSG00000064860.1	n-R5s220	ENSMUSG00000064860.1	ENSMUST00000082926.1	rRNA	chr1:154311408-154311527
chr1	154816721	154816944	-	MIR	SINE	MIR	chr1	154816940	154816942	-	ENSMUST00000188965.6,ENSMUSG00000004110.16	Cacna1e	ENSMUSG00000004110.16	ENSMUST00000188965.6	protein_coding	chr1:154481075-154816941
chr1	154863616	154864572	+	L1Md_F2	LINE	L1	chr1	154864066	154864068	-	ENSMUST00000211821.1,ENSMUSG00000004110.16	Cacna1e	ENSMUSG00000004110.16	ENSMUST00000211821.1	protein_coding	chr1:154398393-154864067
chr1	154884022	154884175	+	G-rich	Low_complexity	Low_complexity	chr1	154884023	154884025	-	ENSMUST00000186256.1,ENSMUSG00000004110.16	Cacna1e	ENSMUSG00000004110.16	ENSMUST00000186256.1	protein_coding	chr1:154882166-154884024
chr1	155057099	155057408	+	MTEa	LTR	ERVL-MaLR	chr1	155057178	155057180	-	ENSMUST00000190720.1,ENSMUSG00000101880.1	Gm29282	ENSMUSG00000101880.1	ENSMUST00000190720.1	lincRNA	chr1:155011332-155057179
chr1	155184302	155184506	+	B3	SINE	B2	chr1	155184309	155184311	+	ENSMUST00000192091.1,ENSMUSG00000026470.14	Stx6	ENSMUSG00000026470.14	ENSMUST00000192091.1	protein_coding	chr1:155184310-155188338
chr1	155194826	155195068	+	HAL1	LINE	L1	chr1	155195020	155195022	+	ENSMUST00000194158.1,ENSMUSG00000026470.14	Stx6	ENSMUSG00000026470.14	ENSMUST00000194158.1	protein_coding	chr1:155195021-155202247
chr1	155231876	155232139	+	L2c	LINE	L2	chr1	155231903	155231905	-	ENSMUST00000188492.1,ENSMUSG00000033722.9	BC034090	ENSMUSG00000033722.9	ENSMUST00000188492.1	protein_coding	chr1:155229114-155231904
chr1	155291940	155292077	-	B1_Mus1	SINE	Alu	chr1	155292026	155292028	-	ENSMUST00000192359.1,ENSMUSG00000026469.14	Xpr1	ENSMUSG00000026469.14	ENSMUST00000192359.1	protein_coding	chr1:155289290-155292027
chr1	155309570	155309708	+	B1_Mus1	SINE	Alu	chr1	155309641	155309643	-	ENSMUST00000139925.1,ENSMUSG00000026469.14	Xpr1	ENSMUSG00000026469.14	ENSMUST00000139925.1	protein_coding	chr1:155282183-155309642
chr1	155315948	155316092	-	B1_Mus2	SINE	Alu	chr1	155315965	155315967	+	ENSMUST00000175545.1,ENSMUSG00000093286.1	Gm22569	ENSMUSG00000093286.1	ENSMUST00000175545.1	miRNA	chr1:155315966-155316089
chr1	155818467	155818618	-	RSINE1	SINE	B4	chr1	155818493	155818495	+	ENSMUST00000195048.1,ENSMUSG00000102558.1	Gm37571	ENSMUSG00000102558.1	ENSMUST00000195048.1	antisense	chr1:155818494-155859591
chr1	155882484	155882555	+	T-rich	Low_complexity	Low_complexity	chr1	155882545	155882547	-	ENSMUST00000191750.1,ENSMUSG00000102837.1	Gm37383	ENSMUSG00000102837.1	ENSMUST00000191750.1	TEC	chr1:155881802-155882546
chr1	155954573	155954650	+	U2	snRNA	snRNA	chr1	155954573	155954575	+	ENSMUST00000104231.1,ENSMUSG00000077419.1	Gm23744	ENSMUSG00000077419.1	ENSMUST00000104231.1	snRNA	chr1:155954574-155954722
chr1	156018596	156018743	-	B1_Mus1	SINE	Alu	chr1	156018618	156018620	-	ENSMUST00000124212.1,ENSMUSG00000026466.16	Tor1aip1	ENSMUSG00000026466.16	ENSMUST00000124212.1	protein_coding	chr1:156017324-156018619
chr1	156035661	156035730	+	GC_rich	Low_complexity	Low_complexity	chr1	156035725	156035727	+	ENSMUST00000111754.8,ENSMUSG00000050565.16	Tor1aip2	ENSMUSG00000050565.16	ENSMUST00000111754.8	protein_coding	chr1:156035726-156053529
chr1	156303642	156303669	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	156303663	156303665	-	ENSMUST00000121146.9,ENSMUSG00000060985.15	Tdrd5	ENSMUSG00000060985.15	ENSMUST00000121146.9	protein_coding	chr1:156255296-156303664
chr1	156399892	156400029	-	RLTR51A_Mm	LTR	ERVK?	chr1	156399989	156399991	-	ENSMUST00000027895.7,ENSMUSG00000026601.14	Axdnd1	ENSMUSG00000026601.14	ENSMUST00000027895.7	protein_coding	chr1:156364926-156399990
chr1	156455116	156455493	+	ORR1B1	LTR	ERVL-MaLR	chr1	156455289	156455291	+	ENSMUST00000192072.1,ENSMUSG00000103199.1	Gm37648	ENSMUSG00000103199.1	ENSMUST00000192072.1	TEC	chr1:156455290-156457852
chr1	156678537	156678570	+	AT_rich	Low_complexity	Low_complexity	chr1	156678544	156678546	+	ENSMUST00000194858.1,ENSMUSG00000102961.1	Gm19918	ENSMUSG00000102961.1	ENSMUST00000194858.1	TEC	chr1:156678545-156678944
chr1	156718914	156719089	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	156719071	156719073	-	ENSMUST00000122424.7,ENSMUSG00000033557.17	Fam20b	ENSMUSG00000033557.17	ENSMUST00000122424.7	protein_coding	chr1:156678532-156719072
chr1	156718914	156719089	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	156719085	156719087	-	ENSMUST00000086153.7,ENSMUSG00000033557.17	Fam20b	ENSMUSG00000033557.17	ENSMUST00000086153.7	protein_coding	chr1:156678571-156719086
chr1	156837688	156838057	+	MTC	LTR	ERVL-MaLR	chr1	156837923	156837925	-	ENSMUST00000189622.1,ENSMUSG00000101964.1	Gm28693	ENSMUSG00000101964.1	ENSMUST00000189622.1	transcribed_processed_pseudogene	chr1:156835287-156837924
chr1	156838548	156838604	+	(TTTTC)n	Simple_repeat	Simple_repeat	chr1	156838561	156838563	+	ENSMUST00000027885.7,ENSMUSG00000033544.6	Angptl1	ENSMUSG00000033544.6	ENSMUST00000027885.7	protein_coding	chr1:156838562-156861078
chr1	156858846	156859007	+	B2_Mm1t	SINE	B2	chr1	156858858	156858860	-	ENSMUST00000194998.1,ENSMUSG00000103303.1	Gm37802	ENSMUSG00000103303.1	ENSMUST00000194998.1	TEC	chr1:156856217-156858859
chr1	156939365	156939515	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	156939386	156939388	-	ENSMUST00000171292.7,ENSMUSG00000026594.14	Ralgps2	ENSMUSG00000026594.14	ENSMUST00000171292.7	protein_coding	chr1:156807710-156939387
chr1	156939618	156939671	+	GC_rich	Low_complexity	Low_complexity	chr1	156939625	156939627	-	ENSMUST00000185198.6,ENSMUSG00000026594.14	Ralgps2	ENSMUSG00000026594.14	ENSMUST00000185198.6	protein_coding	chr1:156813081-156939626
chr1	157053835	157054239	-	MTB_Mm	LTR	ERVL-MaLR	chr1	157054033	157054035	-	ENSMUST00000190681.1,ENSMUSG00000101768.1	Gm28694	ENSMUSG00000101768.1	ENSMUST00000190681.1	lincRNA	chr1:156972760-157054034
chr1	157349330	157350339	+	L1Md_F3	LINE	L1	chr1	157350042	157350044	-	ENSMUST00000193958.1,ENSMUSG00000102326.1	Gm37788	ENSMUSG00000102326.1	ENSMUST00000193958.1	TEC	chr1:157347339-157350043
chr1	157355387	157355905	-	Lx2	LINE	L1	chr1	157355649	157355651	-	ENSMUST00000192256.1,ENSMUSG00000102391.1	Gm37578	ENSMUSG00000102391.1	ENSMUST00000192256.1	TEC	chr1:157354474-157355650
chr1	157406589	157406863	+	B4A	SINE	B4	chr1	157406720	157406722	-	ENSMUST00000194997.1,ENSMUSG00000103808.1	Gm37060	ENSMUSG00000103808.1	ENSMUST00000194997.1	TEC	chr1:157404325-157406721
chr1	158362283	158362355	+	C-rich	Low_complexity	Low_complexity	chr1	158362303	158362305	+	ENSMUST00000046110.15,ENSMUSG00000026587.15	Astn1	ENSMUSG00000026587.15	ENSMUST00000046110.15	protein_coding	chr1:158362304-158691781
chr1	158362283	158362355	+	C-rich	Low_complexity	Low_complexity	chr1	158362339	158362341	+	ENSMUST00000170718.6,ENSMUSG00000026587.15	Astn1	ENSMUSG00000026587.15	ENSMUST00000170718.6	protein_coding	chr1:158362340-158611018
chr1	158534661	158534858	-	B4A	SINE	B4	chr1	158534806	158534808	+	ENSMUST00000191771.1,ENSMUSG00000102508.1	Gm37367	ENSMUSG00000102508.1	ENSMUST00000191771.1	TEC	chr1:158534807-158537408
chr1	158552649	158552857	-	LTR16A	LTR	ERVL	chr1	158552707	158552709	+	ENSMUST00000193599.1,ENSMUSG00000026587.15	Astn1	ENSMUSG00000026587.15	ENSMUST00000193599.1	protein_coding	chr1:158552708-158597227
chr1	158979784	158980169	-	RLTR9A4	LTR	ERVK	chr1	158980070	158980072	-	ENSMUST00000162474.1,ENSMUSG00000047661.9	1600012P17Rik	ENSMUSG00000047661.9	ENSMUST00000162474.1	lincRNA	chr1:158969608-158980071
chr1	159133376	159134433	+	Lx8b	LINE	L1	chr1	159134271	159134273	+	ENSMUST00000195279.1,ENSMUSG00000104014.1	4930562F17Rik	ENSMUSG00000104014.1	ENSMUST00000195279.1	lincRNA	chr1:159134272-159166387
chr1	159211139	159211218	-	PB1D9	SINE	Alu	chr1	159211140	159211142	-	ENSMUST00000193824.1,ENSMUSG00000104169.1	Gm7430	ENSMUSG00000104169.1	ENSMUST00000193824.1	unprocessed_pseudogene	chr1:159209135-159211141
chr1	159232540	159232696	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	159232647	159232649	+	ENSMUST00000192215.5,ENSMUSG00000040782.12	Cop1	ENSMUSG00000040782.12	ENSMUST00000192215.5	protein_coding	chr1:159232648-159289019
chr1	159232540	159232696	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	159232689	159232691	+	ENSMUST00000195554.5,ENSMUSG00000040782.12	Cop1	ENSMUSG00000040782.12	ENSMUST00000195554.5	protein_coding	chr1:159232690-159250142
chr1	159257782	159258766	-	L1M5	LINE	L1	chr1	159258667	159258669	+	ENSMUST00000195044.1,ENSMUSG00000040782.12	Cop1	ENSMUSG00000040782.12	ENSMUST00000195044.1	protein_coding	chr1:159258668-159308489
chr1	159595132	159595169	+	(TG)n	Simple_repeat	Simple_repeat	chr1	159595147	159595149	+	ENSMUST00000194545.1,ENSMUSG00000103225.1	Gm37731	ENSMUSG00000103225.1	ENSMUST00000194545.1	TEC	chr1:159595148-159597384
chr1	160264068	160264338	+	B4A	SINE	B4	chr1	160264323	160264325	+	ENSMUST00000194105.1,ENSMUSG00000104302.1	Gm36975	ENSMUSG00000104302.1	ENSMUST00000194105.1	antisense	chr1:160264324-160443072
chr1	160293345	160293370	+	(A)n	Simple_repeat	Simple_repeat	chr1	160293360	160293362	-	ENSMUST00000192281.1,ENSMUSG00000026721.16	Rabgap1l	ENSMUSG00000026721.16	ENSMUST00000192281.1	protein_coding	chr1:160288605-160293361
chr1	160295822	160295997	+	B3	SINE	B2	chr1	160295971	160295973	-	ENSMUST00000158579.1,ENSMUSG00000089204.1	Mir1927	ENSMUSG00000089204.1	ENSMUST00000158579.1	miRNA	chr1:160295864-160295972
chr1	160316344	160316507	-	B3	SINE	B2	chr1	160316494	160316496	-	ENSMUST00000195414.1,ENSMUSG00000103522.1	9430087J23Rik	ENSMUSG00000103522.1	ENSMUST00000195414.1	TEC	chr1:160315344-160316495
chr1	160573786	160573873	+	(GGAA)n	Simple_repeat	Simple_repeat	chr1	160573809	160573811	-	ENSMUST00000192582.1,ENSMUSG00000104026.1	Gm37212	ENSMUSG00000104026.1	ENSMUST00000192582.1	TEC	chr1:160570161-160573810
chr1	160649784	160650651	+	RMER13B	LTR	ERVK	chr1	160650301	160650303	-	ENSMUST00000194571.1,ENSMUSG00000102172.1	Gm37873	ENSMUSG00000102172.1	ENSMUST00000194571.1	TEC	chr1:160648023-160650302
chr1	160728113	160728302	+	B3	SINE	B2	chr1	160728159	160728161	-	ENSMUST00000193473.1,ENSMUSG00000103632.1	Gm38329	ENSMUSG00000103632.1	ENSMUST00000193473.1	TEC	chr1:160727734-160728160
chr1	160792851	160792947	+	G-rich	Low_complexity	Low_complexity	chr1	160792945	160792947	-	ENSMUST00000028049.12,ENSMUSG00000026721.16	Rabgap1l	ENSMUSG00000026721.16	ENSMUST00000028049.12	protein_coding	chr1:160257205-160792946
chr1	160792851	160792947	+	G-rich	Low_complexity	Low_complexity	chr1	160792937	160792939	-	ENSMUST00000195442.5,ENSMUSG00000026721.16	Rabgap1l	ENSMUSG00000026721.16	ENSMUST00000195442.5	protein_coding	chr1:160672451-160792938
chr1	160798333	160798709	+	Lx6	LINE	L1	chr1	160798681	160798683	+	ENSMUST00000195784.1,ENSMUSG00000102852.1	Gm37083	ENSMUSG00000102852.1	ENSMUST00000195784.1	lincRNA	chr1:160798682-160800819
chr1	160906417	160906484	+	GA-rich	Low_complexity	Low_complexity	chr1	160906417	160906419	+	ENSMUST00000161609.7,ENSMUSG00000040423.10	Rc3h1	ENSMUSG00000040423.10	ENSMUST00000161609.7	protein_coding	chr1:160906418-160974978
chr1	160910772	160910810	+	(TG)n	Simple_repeat	Simple_repeat	chr1	160910788	160910790	+	ENSMUST00000194929.1,ENSMUSG00000103343.1	Gm37052	ENSMUSG00000103343.1	ENSMUST00000194929.1	TEC	chr1:160910789-160912619
chr1	160913448	160913587	-	B1_Mur2	SINE	Alu	chr1	160913471	160913473	+	ENSMUST00000195050.1,ENSMUSG00000103846.1	Gm37809	ENSMUSG00000103846.1	ENSMUST00000195050.1	TEC	chr1:160913472-160914402
chr1	160915323	160915887	-	L1MA6	LINE	L1	chr1	160915323	160915325	+	ENSMUST00000195401.1,ENSMUSG00000103739.1	Gm37653	ENSMUSG00000103739.1	ENSMUST00000195401.1	TEC	chr1:160915324-160918901
chr1	160978465	160978588	-	MER5A1	DNA	hAT-Charlie	chr1	160978584	160978586	+	ENSMUST00000193477.1,ENSMUSG00000026715.12	Serpinc1	ENSMUSG00000026715.12	ENSMUST00000193477.1	protein_coding	chr1:160978585-160981770
chr1	160984546	160984930	+	MTA_Mm	LTR	ERVL-MaLR	chr1	160984767	160984769	+	ENSMUST00000194592.1,ENSMUSG00000026715.12	Serpinc1	ENSMUSG00000026715.12	ENSMUST00000194592.1	protein_coding	chr1:160984768-160997443
chr1	160985606	160985770	-	RSINE1	SINE	B4	chr1	160985757	160985759	+	ENSMUST00000194761.1,ENSMUSG00000103222.1	Gm37729	ENSMUSG00000103222.1	ENSMUST00000194761.1	TEC	chr1:160985758-160986929
chr1	160986998	160987107	+	ID_B1	SINE	B4	chr1	160987086	160987088	+	ENSMUST00000194777.1,ENSMUSG00000026715.12	Serpinc1	ENSMUSG00000026715.12	ENSMUST00000194777.1	protein_coding	chr1:160987087-160989748
chr1	161030553	161030598	+	B1F	SINE	Alu	chr1	161030581	161030583	+	ENSMUST00000194567.1,ENSMUSG00000104016.1	Gm37362	ENSMUSG00000104016.1	ENSMUST00000194567.1	antisense	chr1:161030582-161031456
chr1	161047036	161047317	-	MTC	LTR	ERVL-MaLR	chr1	161047141	161047143	-	ENSMUST00000161748.7,ENSMUSG00000026709.10	Dars2	ENSMUSG00000026709.10	ENSMUST00000161748.7	protein_coding	chr1:161041499-161047142
chr1	161251210	161251247	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	161251218	161251220	-	ENSMUST00000071718.11,ENSMUSG00000026701.15	Prdx6	ENSMUSG00000026701.15	ENSMUST00000071718.11	protein_coding	chr1:161240112-161251219
chr1	161298936	161299232	+	Lx8	LINE	L1	chr1	161299013	161299015	-	ENSMUST00000194329.1,ENSMUSG00000104163.1	Gm19057	ENSMUSG00000104163.1	ENSMUST00000194329.1	processed_pseudogene	chr1:161297818-161299014
chr1	161844328	161844364	+	(CA)n	Simple_repeat	Simple_repeat	chr1	161844352	161844354	-	ENSMUST00000194106.1,ENSMUSG00000040297.12	Suco	ENSMUSG00000040297.12	ENSMUST00000194106.1	protein_coding	chr1:161838777-161844353
chr1	161876597	161876703	+	C-rich	Low_complexity	Low_complexity	chr1	161876681	161876683	-	ENSMUST00000048377.10,ENSMUSG00000040297.12	Suco	ENSMUSG00000040297.12	ENSMUST00000048377.10	protein_coding	chr1:161816114-161876682
chr1	161890243	161890610	+	MTA_Mm	LTR	ERVL-MaLR	chr1	161890457	161890459	+	ENSMUST00000193561.5,ENSMUSG00000103158.5	Gm31925	ENSMUSG00000103158.5	ENSMUST00000193561.5	lincRNA	chr1:161890458-161900947
chr1	161892121	161892323	+	ORR1F	LTR	ERVL-MaLR	chr1	161892146	161892148	+	ENSMUST00000194266.1,ENSMUSG00000103158.5	Gm31925	ENSMUSG00000103158.5	ENSMUST00000194266.1	lincRNA	chr1:161892147-161903173
chr1	161985703	161985743	+	(A)n	Simple_repeat	Simple_repeat	chr1	161985728	161985730	-	ENSMUST00000195403.1,ENSMUSG00000040265.16	Dnm3	ENSMUSG00000040265.16	ENSMUST00000195403.1	protein_coding	chr1:161982458-161985729
chr1	162088373	162088514	+	L1Md_A	LINE	L1	chr1	162088467	162088469	-	ENSMUST00000193239.1,ENSMUSG00000102994.1	Gm37767	ENSMUSG00000102994.1	ENSMUST00000193239.1	TEC	chr1:162086635-162088468
chr1	162424414	162424820	-	MTD	LTR	ERVL-MaLR	chr1	162424588	162424590	-	ENSMUST00000161894.1,ENSMUSG00000040265.16	Dnm3	ENSMUSG00000040265.16	ENSMUST00000161894.1	protein_coding	chr1:162386023-162424589
chr1	162730707	162730860	+	MT2B	LTR	ERVL	chr1	162730720	162730722	-	ENSMUST00000193937.1,ENSMUSG00000040225.15	Prrc2c	ENSMUSG00000040225.15	ENSMUST00000193937.1	protein_coding	chr1:162728617-162730721
chr1	163313702	163313776	+	G-rich	Low_complexity	Low_complexity	chr1	163313709	163313711	-	ENSMUST00000027878.13,ENSMUSG00000026586.16	Prrx1	ENSMUSG00000026586.16	ENSMUST00000027878.13	protein_coding	chr1:163245119-163313710
chr1	163951056	163951221	+	B3A	SINE	B2	chr1	163951212	163951214	+	ENSMUST00000162920.1,ENSMUSG00000026584.14	Scyl3	ENSMUSG00000026584.14	ENSMUST00000162920.1	protein_coding	chr1:163951213-163953802
chr1	164031878	164031968	+	RMER1B	Other	Other	chr1	164031959	164031961	+	ENSMUST00000195691.1,ENSMUSG00000103960.1	Gm37119	ENSMUSG00000103960.1	ENSMUST00000195691.1	processed_pseudogene	chr1:164031960-164032348
chr1	164061970	164062015	+	(GA)n	Simple_repeat	Simple_repeat	chr1	164061981	164061983	+	ENSMUST00000192047.5,ENSMUSG00000026581.14	Sell	ENSMUSG00000026581.14	ENSMUST00000192047.5	protein_coding	chr1:164061982-164084181
chr1	164146636	164146804	+	L1Md_F2	LINE	L1	chr1	164146762	164146764	+	ENSMUST00000162102.1,ENSMUSG00000026580.16	Selp	ENSMUSG00000026580.16	ENSMUST00000162102.1	protein_coding	chr1:164146763-164149154
chr1	164152197	164152234	+	(GGA)n	Simple_repeat	Simple_repeat	chr1	164152216	164152218	-	ENSMUST00000133341.2,ENSMUSG00000086593.2	Gm16548	ENSMUSG00000086593.2	ENSMUST00000133341.2	lincRNA	chr1:164148591-164152217
chr1	164166553	164166614	-	PB1D10	SINE	Alu	chr1	164166578	164166580	+	ENSMUST00000162889.1,ENSMUSG00000089790.1	Gm16588	ENSMUSG00000089790.1	ENSMUST00000162889.1	processed_pseudogene	chr1:164166579-164166933
chr1	164312313	164313113	-	Lx8	LINE	L1	chr1	164312878	164312880	+	ENSMUST00000086028.5,ENSMUSG00000026575.15	Nme7	ENSMUSG00000026575.15	ENSMUST00000086028.5	protein_coding	chr1:164312879-164348181
chr1	164443594	164443745	-	MIRb	SINE	MIR	chr1	164443718	164443720	-	ENSMUST00000193980.1,ENSMUSG00000026576.12	Atp1b1	ENSMUSG00000026576.12	ENSMUST00000193980.1	protein_coding	chr1:164441459-164443719
chr1	164575449	164575484	+	(GA)n	Simple_repeat	Simple_repeat	chr1	164575454	164575456	+	ENSMUST00000191913.1,ENSMUSG00000102389.1	D630023O14Rik	ENSMUSG00000102389.1	ENSMUST00000191913.1	TEC	chr1:164575455-164578553
chr1	164693519	164698965	+	L1Md_F3	LINE	L1	chr1	164698232	164698234	-	ENSMUST00000195748.1,ENSMUSG00000102897.1	Gm37853	ENSMUSG00000102897.1	ENSMUST00000195748.1	lincRNA	chr1:164640953-164698233
chr1	164712427	164713039	+	RLTR49	LTR	ERVK	chr1	164712512	164712514	-	ENSMUST00000192040.1,ENSMUSG00000102163.1	Gm36945	ENSMUSG00000102163.1	ENSMUST00000192040.1	lincRNA	chr1:164705419-164712513
chr1	164712427	164713039	+	RLTR49	LTR	ERVK	chr1	164712540	164712542	-	ENSMUST00000193985.1,ENSMUSG00000102163.1	Gm36945	ENSMUSG00000102163.1	ENSMUST00000193985.1	lincRNA	chr1:164705596-164712541
chr1	164960828	164960935	-	MIR	SINE	MIR	chr1	164960920	164960922	+	ENSMUST00000187300.1,ENSMUSG00000101189.1	1700029M03Rik	ENSMUSG00000101189.1	ENSMUST00000187300.1	lincRNA	chr1:164960921-164962825
chr1	164960828	164960935	-	MIR	SINE	MIR	chr1	164960922	164960924	+	ENSMUST00000187517.1,ENSMUSG00000101189.1	1700029M03Rik	ENSMUSG00000101189.1	ENSMUST00000187517.1	lincRNA	chr1:164960923-164961402
chr1	165024314	165024346	+	(CA)n	Simple_repeat	Simple_repeat	chr1	165024344	165024346	+	ENSMUST00000116911.1,ENSMUSG00000080561.1	Gm26042	ENSMUSG00000080561.1	ENSMUST00000116911.1	miRNA	chr1:165024345-165024456
chr1	165148949	165149107	+	B2_Mm2	SINE	B2	chr1	165148948	165148950	-	ENSMUST00000162550.1,ENSMUSG00000089967.1	Gm16550	ENSMUSG00000089967.1	ENSMUST00000162550.1	processed_pseudogene	chr1:165148824-165148949
chr1	165216501	165216626	+	Lx9	LINE	L1	chr1	165216526	165216528	-	ENSMUST00000192726.1,ENSMUSG00000040843.10	Tiprl	ENSMUSG00000040843.10	ENSMUST00000192726.1	protein_coding	chr1:165215582-165216527
chr1	165295493	165295966	+	MT2C_Mm	LTR	ERVL	chr1	165295788	165295790	+	ENSMUST00000178700.7,ENSMUSG00000040836.15	Gpr161	ENSMUSG00000040836.15	ENSMUST00000178700.7	protein_coding	chr1:165295789-165321797
chr1	165379157	165379606	-	L2a	LINE	L2	chr1	165379518	165379520	+	ENSMUST00000193181.1,ENSMUSG00000104427.1	Gm38368	ENSMUSG00000104427.1	ENSMUST00000193181.1	TEC	chr1:165379519-165380853
chr1	165454231	165454635	+	ORR1C2	LTR	ERVL-MaLR	chr1	165454628	165454630	-	ENSMUST00000195308.1,ENSMUSG00000102401.1	Gm37864	ENSMUSG00000102401.1	ENSMUST00000195308.1	sense_intronic	chr1:165451555-165454629
chr1	165495119	165495660	+	MMSAT4	Satellite	Satellite	chr1	165495166	165495168	-	ENSMUST00000194507.1,ENSMUSG00000103583.1	Gm38325	ENSMUSG00000103583.1	ENSMUST00000194507.1	antisense	chr1:165493791-165495167
chr1	165498040	165498254	-	7SK	RNA	RNA	chr1	165498248	165498250	-	ENSMUST00000157261.1,ENSMUSG00000087886.1	Gm23599	ENSMUSG00000087886.1	ENSMUST00000157261.1	misc_RNA	chr1:165497999-165498249
chr1	165509889	165510024	+	B1_Mur3	SINE	Alu	chr1	165509910	165509912	+	ENSMUST00000195194.1,ENSMUSG00000026567.16	Adcy10	ENSMUSG00000026567.16	ENSMUST00000195194.1	protein_coding	chr1:165509911-165543280
chr1	165609213	165609665	-	L1MC2	LINE	L1	chr1	165609545	165609547	-	ENSMUST00000191818.5,ENSMUSG00000026566.15	Mpzl1	ENSMUSG00000026566.15	ENSMUST00000191818.5	protein_coding	chr1:165593410-165609546
chr1	165644672	165644746	+	CT-rich	Low_complexity	Low_complexity	chr1	165644687	165644689	-	ENSMUST00000192126.1,ENSMUSG00000104517.1	Gm18407	ENSMUSG00000104517.1	ENSMUST00000192126.1	processed_pseudogene	chr1:165643899-165644688
chr1	165694764	165694831	+	Tigger7	DNA	TcMar-Tigger	chr1	165694764	165694766	+	ENSMUST00000196594.1,ENSMUSG00000105249.1	Gm44458	ENSMUSG00000105249.1	ENSMUST00000196594.1	miRNA	chr1:165694765-165694907
chr1	165709295	165709417	+	MIRb	SINE	MIR	chr1	165709392	165709394	-	ENSMUST00000193714.1,ENSMUSG00000040723.14	Rcsd1	ENSMUSG00000040723.14	ENSMUST00000193714.1	protein_coding	chr1:165664953-165709393
chr1	165721503	165721661	+	L1M3	LINE	L1	chr1	165721555	165721557	+	ENSMUST00000192469.1,ENSMUSG00000103686.1	Gm37073	ENSMUSG00000103686.1	ENSMUST00000192469.1	lincRNA	chr1:165721556-165722777
chr1	165809635	165809742	-	U6	snRNA	snRNA	chr1	165809741	165809743	-	ENSMUST00000178130.1,ENSMUSG00000094394.1	Gm23402	ENSMUSG00000094394.1	ENSMUST00000178130.1	snRNA	chr1:165809636-165809742
chr1	165892109	165892138	+	(CCCA)n	Simple_repeat	Simple_repeat	chr1	165892118	165892120	-	ENSMUST00000176004.1,ENSMUSG00000026565.18	Pou2f1	ENSMUSG00000026565.18	ENSMUST00000176004.1	protein_coding	chr1:165875584-165892119
chr1	166002658	166002742	+	C-rich	Low_complexity	Low_complexity	chr1	166002677	166002679	-	ENSMUST00000160260.8,ENSMUSG00000026565.18	Pou2f1	ENSMUSG00000026565.18	ENSMUST00000160260.8	protein_coding	chr1:165865154-166002678
chr1	166430816	166432497	-	Lx2	LINE	L1	chr1	166431874	166431876	-	ENSMUST00000118577.1,ENSMUSG00000084093.1	Gm16418	ENSMUSG00000084093.1	ENSMUST00000118577.1	processed_pseudogene	chr1:166431705-166431875
chr1	166620126	166620595	+	MT2_Mm	LTR	ERVL	chr1	166620361	166620363	+	ENSMUST00000179496.1,ENSMUSG00000096172.1	Gm22992	ENSMUSG00000096172.1	ENSMUST00000179496.1	miRNA	chr1:166620362-166620482
chr1	167340266	167340543	-	LSU-rRNA_Hsa	rRNA	rRNA	chr1	167340423	167340425	-	ENSMUST00000157621.1,ENSMUSG00000088246.1	Gm25911	ENSMUSG00000088246.1	ENSMUST00000157621.1	miRNA	chr1:167340369-167340424
chr1	167349025	167349131	+	U6	snRNA	snRNA	chr1	167349024	167349026	+	ENSMUST00000179419.1,ENSMUSG00000095752.1	Gm24182	ENSMUSG00000095752.1	ENSMUST00000179419.1	snRNA	chr1:167349025-167349131
chr1	167393828	167393865	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	167393840	167393842	-	ENSMUST00000028005.2,ENSMUSG00000026688.5	Mgst3	ENSMUSG00000026688.5	ENSMUST00000028005.2	protein_coding	chr1:167371966-167393841
chr1	167598365	167598427	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	167598383	167598385	+	ENSMUST00000015987.9,ENSMUSG00000015843.10	Rxrg	ENSMUSG00000015843.10	ENSMUST00000015987.9	protein_coding	chr1:167598384-167639623
chr1	168003836	168004214	+	RLTR10C	LTR	ERVK	chr1	168004138	168004140	+	ENSMUST00000177351.2,ENSMUSG00000093538.2	Gm20711	ENSMUSG00000093538.2	ENSMUST00000177351.2	antisense	chr1:168004139-168122465
chr1	168337592	168337880	-	B4A	SINE	B4	chr1	168337670	168337672	-	ENSMUST00000192272.1,ENSMUSG00000103780.1	Gm37524	ENSMUSG00000103780.1	ENSMUST00000192272.1	TEC	chr1:168335980-168337671
chr1	168431697	168431771	+	G-rich	Low_complexity	Low_complexity	chr1	168431749	168431751	-	ENSMUST00000176790.7,ENSMUSG00000052534.15	Pbx1	ENSMUSG00000052534.15	ENSMUST00000176790.7	protein_coding	chr1:168158330-168431750
chr1	168432199	168432306	+	(GGA)n	Simple_repeat	Simple_repeat	chr1	168432269	168432271	-	ENSMUST00000188912.6,ENSMUSG00000052534.15	Pbx1	ENSMUSG00000052534.15	ENSMUST00000188912.6	protein_coding	chr1:168119364-168432270
chr1	169018916	169019191	+	B4A	SINE	B4	chr1	169019088	169019090	-	ENSMUST00000184979.1,ENSMUSG00000098829.1	Mir6354	ENSMUSG00000098829.1	ENSMUST00000184979.1	miRNA	chr1:169018974-169019089
chr1	169799449	169799556	-	U6	snRNA	snRNA	chr1	169799555	169799557	-	ENSMUST00000177756.1,ENSMUSG00000096772.1	Gm22114	ENSMUSG00000096772.1	ENSMUST00000177756.1	snRNA	chr1:169799450-169799556
chr1	170097149	170097491	-	ORR1A0	LTR	ERVL-MaLR	chr1	170097327	170097329	-	ENSMUST00000194619.1,ENSMUSG00000026674.9	Ddr2	ENSMUSG00000026674.9	ENSMUST00000194619.1	protein_coding	chr1:170083632-170097328
chr1	170174831	170174911	+	GC_rich	Low_complexity	Low_complexity	chr1	170174885	170174887	-	ENSMUST00000191690.1,ENSMUSG00000026670.15	Uap1	ENSMUSG00000026670.15	ENSMUST00000191690.1	protein_coding	chr1:170169332-170174886
chr1	170454815	170454980	-	MIRb	SINE	MIR	chr1	170454913	170454915	-	ENSMUST00000160816.7,ENSMUSG00000038473.14	Nos1ap	ENSMUSG00000038473.14	ENSMUST00000160816.7	protein_coding	chr1:170338209-170454914
chr1	170751716	170751823	-	U6	snRNA	snRNA	chr1	170751822	170751824	-	ENSMUST00000180190.1,ENSMUSG00000096310.1	Gm23523	ENSMUSG00000096310.1	ENSMUST00000180190.1	snRNA	chr1:170751717-170751823
chr1	170751823	170751879	+	Tigger13a	DNA	TcMar-Tigger	chr1	170751822	170751824	-	ENSMUST00000180190.1,ENSMUSG00000096310.1	Gm23523	ENSMUSG00000096310.1	ENSMUST00000180190.1	snRNA	chr1:170751717-170751823
chr1	170794347	170794371	+	AT_rich	Low_complexity	Low_complexity	chr1	170794370	170794372	-	ENSMUST00000182787.1,ENSMUSG00000026663.6	Atf6	ENSMUSG00000026663.6	ENSMUST00000182787.1	protein_coding	chr1:170792287-170794371
chr1	170832768	170832871	-	U6	snRNA	snRNA	chr1	170832870	170832872	-	ENSMUST00000179933.1,ENSMUSG00000096547.1	Gm25235	ENSMUSG00000096547.1	ENSMUST00000179933.1	snRNA	chr1:170832765-170832871
chr1	170935728	170935774	+	MTEb	LTR	ERVL-MaLR	chr1	170935770	170935772	+	ENSMUST00000194254.1,ENSMUSG00000104386.1	Gm37030	ENSMUSG00000104386.1	ENSMUST00000194254.1	processed_pseudogene	chr1:170935771-170936065
chr1	170981823	170982097	+	ORR1A2	LTR	ERVL-MaLR	chr1	170981943	170981945	+	ENSMUST00000194503.1,ENSMUSG00000104340.1	Gm10522	ENSMUSG00000104340.1	ENSMUST00000194503.1	lincRNA	chr1:170981944-170986466
chr1	171027964	171028128	+	U1	snRNA	snRNA	chr1	171027964	171027966	+	ENSMUST00000083971.1,ENSMUSG00000065905.1	Gm26110	ENSMUSG00000065905.1	ENSMUST00000083971.1	snRNA	chr1:171027965-171028129
chr1	171273387	171273533	-	B1_Mus2	SINE	Alu	chr1	171273514	171273516	+	ENSMUST00000132890.1,ENSMUSG00000052423.14	B4galt3	ENSMUSG00000052423.14	ENSMUST00000132890.1	protein_coding	chr1:171273515-171276894
chr1	171290397	171290440	+	(CA)n	Simple_repeat	Simple_repeat	chr1	171290439	171290441	-	ENSMUST00000138974.1,ENSMUSG00000062963.10	Ufc1	ENSMUSG00000062963.10	ENSMUST00000138974.1	protein_coding	chr1:171288565-171290440
chr1	171326136	171326275	+	B1_Mur2	SINE	Alu	chr1	171326176	171326178	-	ENSMUST00000192658.1,ENSMUSG00000103983.1	Gm20045	ENSMUSG00000103983.1	ENSMUST00000192658.1	lincRNA	chr1:171320601-171326177
chr1	171329404	171329439	+	(CGG)n	Simple_repeat	Simple_repeat	chr1	171329407	171329409	+	ENSMUST00000064950.10,ENSMUSG00000013973.12	Dedd	ENSMUSG00000013973.12	ENSMUST00000064950.10	protein_coding	chr1:171329408-171341682
chr1	171329502	171329597	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	171329568	171329570	+	ENSMUST00000142063.7,ENSMUSG00000013973.12	Dedd	ENSMUSG00000013973.12	ENSMUST00000142063.7	protein_coding	chr1:171329569-171340295
chr1	171336778	171336909	-	B2_Mm2	SINE	B2	chr1	171336790	171336792	+	ENSMUST00000131653.1,ENSMUSG00000013973.12	Dedd	ENSMUSG00000013973.12	ENSMUST00000131653.1	protein_coding	chr1:171336791-171340132
chr1	171503046	171503163	-	U5	snRNA	snRNA	chr1	171503162	171503164	-	ENSMUST00000083099.1,ENSMUSG00000094668.1	Gm24871	ENSMUSG00000094668.1	ENSMUST00000083099.1	snRNA	chr1:171503048-171503163
chr1	171634860	171634897	+	(TTTTG)n	Simple_repeat	Simple_repeat	chr1	171634878	171634880	+	ENSMUST00000192524.1,ENSMUSG00000103219.1	Gm37787	ENSMUSG00000103219.1	ENSMUST00000192524.1	antisense	chr1:171634879-171636022
chr1	171641835	171642551	-	RMER13A1	LTR	ERVK	chr1	171641899	171641901	-	ENSMUST00000183842.1,ENSMUSG00000098316.1	Mir7683	ENSMUSG00000098316.1	ENSMUST00000183842.1	miRNA	chr1:171641840-171641900
chr1	171651955	171653043	+	Lx8	LINE	L1	chr1	171653034	171653036	-	ENSMUST00000192195.5,ENSMUSG00000038179.13	Slamf7	ENSMUSG00000038179.13	ENSMUST00000192195.5	protein_coding	chr1:171632403-171653035
chr1	171687992	171688575	-	L1_Mus2	LINE	L1	chr1	171688310	171688312	+	ENSMUST00000194539.1,ENSMUSG00000103883.1	Gm37010	ENSMUSG00000103883.1	ENSMUST00000194539.1	TEC	chr1:171688311-171690014
chr1	171725638	171728669	+	MMERVK10C-int	LTR	ERVK	chr1	171725637	171725639	-	ENSMUST00000194562.1,ENSMUSG00000104224.1	Gm37693	ENSMUSG00000104224.1	ENSMUST00000194562.1	processed_pseudogene	chr1:171725405-171725638
chr1	171733405	171733666	-	ORR1A4	LTR	ERVL-MaLR	chr1	171733404	171733406	-	ENSMUST00000082776.2,ENSMUSG00000095636.1	Gm22950	ENSMUSG00000095636.1	ENSMUST00000082776.2	snRNA	chr1:171733299-171733405
chr1	171895196	171895708	-	RLTR45	LTR	ERVK	chr1	171895663	171895665	+	ENSMUST00000097466.2,ENSMUSG00000073492.2	Gm10521	ENSMUSG00000073492.2	ENSMUST00000097466.2	protein_coding	chr1:171895664-171898237
chr1	171917303	171917584	-	Lx5b	LINE	L1	chr1	171917514	171917516	+	ENSMUST00000195656.5,ENSMUSG00000015314.10	Slamf6	ENSMUSG00000015314.10	ENSMUST00000195656.5	protein_coding	chr1:171917515-171953170
chr1	171917303	171917584	-	Lx5b	LINE	L1	chr1	171917536	171917538	+	ENSMUST00000171330.6,ENSMUSG00000015314.10	Slamf6	ENSMUSG00000015314.10	ENSMUST00000171330.6	protein_coding	chr1:171917537-171943910
chr1	171931468	171931560	+	PB1D10	SINE	Alu	chr1	171931556	171931558	+	ENSMUST00000193311.1,ENSMUSG00000015314.10	Slamf6	ENSMUSG00000015314.10	ENSMUST00000193311.1	protein_coding	chr1:171931557-171934476
chr1	172027286	172027357	+	G-rich	Low_complexity	Low_complexity	chr1	172027294	172027296	-	ENSMUST00000027837.12,ENSMUSG00000026556.15	Vangl2	ENSMUSG00000026556.15	ENSMUST00000027837.12	protein_coding	chr1:172000960-172027295
chr1	172027286	172027357	+	G-rich	Low_complexity	Low_complexity	chr1	172027294	172027296	-	ENSMUST00000111264.7,ENSMUSG00000026556.15	Vangl2	ENSMUSG00000026556.15	ENSMUST00000111264.7	protein_coding	chr1:172004429-172027295
chr1	172057526	172057591	+	IMPB_01	Satellite	Satellite	chr1	172057572	172057574	-	ENSMUST00000059794.3,ENSMUSG00000051251.3	Nhlh1	ENSMUSG00000051251.3	ENSMUST00000059794.3	protein_coding	chr1:172052292-172057573
chr1	172092674	172092702	+	AT_rich	Low_complexity	Low_complexity	chr1	172092678	172092680	-	ENSMUST00000191834.1,ENSMUSG00000103380.1	Gm37756	ENSMUSG00000103380.1	ENSMUST00000191834.1	antisense	chr1:172089910-172092679
chr1	172114312	172114682	-	MLT1F2	LTR	ERVL-MaLR	chr1	172114336	172114338	+	ENSMUST00000122845.7,ENSMUSG00000026553.17	Copa	ENSMUSG00000026553.17	ENSMUST00000122845.7	protein_coding	chr1:172114337-172122328
chr1	172178426	172178626	-	B3	SINE	B2	chr1	172178536	172178538	+	ENSMUST00000192428.1,ENSMUSG00000026554.15	Dcaf8	ENSMUSG00000026554.15	ENSMUST00000192428.1	protein_coding	chr1:172178537-172183073
chr1	172206679	172206723	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	172206696	172206698	-	ENSMUST00000155109.1,ENSMUSG00000013698.12	Pea15a	ENSMUSG00000013698.12	ENSMUST00000155109.1	protein_coding	chr1:172199161-172206697
chr1	172206787	172206843	+	G-rich	Low_complexity	Low_complexity	chr1	172206803	172206805	-	ENSMUST00000013842.11,ENSMUSG00000013698.12	Pea15a	ENSMUSG00000013698.12	ENSMUST00000013842.11	protein_coding	chr1:172196728-172206804
chr1	172206787	172206843	+	G-rich	Low_complexity	Low_complexity	chr1	172206803	172206805	-	ENSMUST00000111247.7,ENSMUSG00000013698.12	Pea15a	ENSMUSG00000013698.12	ENSMUST00000111247.7	protein_coding	chr1:172196728-172206804
chr1	172206787	172206843	+	G-rich	Low_complexity	Low_complexity	chr1	172206803	172206805	-	ENSMUST00000152432.1,ENSMUSG00000013698.12	Pea15a	ENSMUSG00000013698.12	ENSMUST00000152432.1	protein_coding	chr1:172199775-172206804
chr1	172276462	172276507	+	(TG)n	Simple_repeat	Simple_repeat	chr1	172276477	172276479	-	ENSMUST00000191781.1,ENSMUSG00000007097.14	Atp1a2	ENSMUSG00000007097.14	ENSMUST00000191781.1	protein_coding	chr1:172275918-172276478
chr1	172390787	172391155	-	ORR1B1	LTR	ERVL-MaLR	chr1	172390988	172390990	-	ENSMUST00000193540.1,ENSMUSG00000102278.1	Gm37145	ENSMUSG00000102278.1	ENSMUST00000193540.1	TEC	chr1:172388234-172390989
chr1	172525949	172526069	-	L3b	LINE	CR1	chr1	172526048	172526050	+	ENSMUST00000159792.7,ENSMUSG00000026546.16	Cfap45	ENSMUSG00000026546.16	ENSMUST00000159792.7	protein_coding	chr1:172526049-172532685
chr1	172669636	172669746	-	BC1_Mm	scRNA	scRNA	chr1	172669635	172669637	-	ENSMUST00000073196.3,ENSMUSG00000060128.5	Gm2710	ENSMUSG00000060128.5	ENSMUST00000073196.3	processed_pseudogene	chr1:172669034-172669636
chr1	172843620	172844541	+	Lx3_Mus	LINE	L1	chr1	172843637	172843639	-	ENSMUST00000093672.1,ENSMUSG00000070182.1	Gm24817	ENSMUSG00000070182.1	ENSMUST00000093672.1	snRNA	chr1:172843534-172843638
chr1	173341916	173341994	+	(TC)n	Simple_repeat	Simple_repeat	chr1	173341925	173341927	-	ENSMUST00000136540.1,ENSMUSG00000005338.13	Cadm3	ENSMUSG00000005338.13	ENSMUST00000136540.1	protein_coding	chr1:173336839-173341926
chr1	173420411	173420765	+	ORR1E	LTR	ERVL-MaLR	chr1	173420597	173420599	+	ENSMUST00000173023.1,ENSMUSG00000037860.15	Aim2	ENSMUSG00000037860.15	ENSMUST00000173023.1	protein_coding	chr1:173420598-173459719
chr1	173454731	173455049	+	L1MD	LINE	L1	chr1	173454970	173454972	+	ENSMUST00000151176.1,ENSMUSG00000037860.15	Aim2	ENSMUSG00000037860.15	ENSMUST00000151176.1	protein_coding	chr1:173454971-173455595
chr1	173491020	173491109	-	RMER17C2	LTR	ERVK	chr1	173491040	173491042	-	ENSMUST00000160565.3,ENSMUSG00000037849.8	Ifi206	ENSMUSG00000037849.8	ENSMUST00000160565.3	protein_coding	chr1:173468485-173491041
chr1	173580305	173580638	-	IAPEY3_LTR	LTR	ERVK	chr1	173580352	173580354	-	ENSMUST00000178186.7,ENSMUSG00000073491.11	Ifi213	ENSMUSG00000073491.11	ENSMUST00000178186.7	protein_coding	chr1:173566284-173580353
chr1	173580305	173580638	-	IAPEY3_LTR	LTR	ERVK	chr1	173580399	173580401	-	ENSMUST00000179648.1,ENSMUSG00000073491.11	Ifi213	ENSMUSG00000073491.11	ENSMUST00000179648.1	protein_coding	chr1:173566284-173580400
chr1	173599092	173599133	+	(TG)n	Simple_repeat	Simple_repeat	chr1	173599108	173599110	-	ENSMUST00000180215.1,ENSMUSG00000073491.11	Ifi213	ENSMUSG00000073491.11	ENSMUST00000180215.1	protein_coding	chr1:173593777-173599109
chr1	173866479	173869021	+	MMERVK9C_I-int	LTR	ERVK	chr1	173868759	173868761	-	ENSMUST00000189474.6,ENSMUSG00000090272.8	Mndal	ENSMUSG00000090272.8	ENSMUST00000189474.6	protein_coding	chr1:173857490-173868760
chr1	173880282	173880312	+	(CA)n	Simple_repeat	Simple_repeat	chr1	173880304	173880306	-	ENSMUST00000188804.6,ENSMUSG00000090272.8	Mndal	ENSMUSG00000090272.8	ENSMUST00000188804.6	protein_coding	chr1:173857220-173880305
chr1	173880749	173881137	+	RLTR19	LTR	ERVK	chr1	173880880	173880882	-	ENSMUST00000189501.6,ENSMUSG00000090272.8	Mndal	ENSMUSG00000090272.8	ENSMUST00000189501.6	protein_coding	chr1:173871482-173880881
chr1	174093915	174094971	+	RLTR13E	LTR	ERVK	chr1	174094966	174094968	+	ENSMUST00000201135.1,ENSMUSG00000106975.1	Olfr428-ps1	ENSMUSG00000106975.1	ENSMUST00000201135.1	unprocessed_pseudogene	chr1:174094967-174095432
chr1	175619622	175620445	+	RMER19B	LTR	ERVK	chr1	175620380	175620382	+	ENSMUST00000140474.7,ENSMUSG00000039783.15	Kmo	ENSMUSG00000039783.15	ENSMUST00000140474.7	protein_coding	chr1:175620381-175659962
chr1	175904544	175904648	+	U6	snRNA	snRNA	chr1	175904544	175904546	+	ENSMUST00000180129.1,ENSMUSG00000094820.1	Gm23805	ENSMUSG00000094820.1	ENSMUST00000180129.1	snRNA	chr1:175904545-175904651
chr1	175907500	175907618	-	B1F2	SINE	Alu	chr1	175907568	175907570	+	ENSMUST00000192378.1,ENSMUSG00000039748.11	Exo1	ENSMUSG00000039748.11	ENSMUST00000192378.1	protein_coding	chr1:175907569-175908744
chr1	175978962	175979203	-	MT2B1	LTR	ERVL	chr1	175979113	175979115	-	ENSMUST00000104983.1,ENSMUSG00000078184.1	Rbm8a2	ENSMUSG00000078184.1	ENSMUST00000104983.1	protein_coding	chr1:175977777-175979114
chr1	176032656	176033318	-	L1Md_F3	LINE	L1	chr1	176032722	176032724	-	ENSMUST00000192680.1,ENSMUSG00000104363.1	Gm38081	ENSMUSG00000104363.1	ENSMUST00000192680.1	TEC	chr1:176031079-176032723
chr1	176700616	176700702	+	U6	snRNA	snRNA	chr1	176700616	176700618	+	ENSMUST00000157250.1,ENSMUSG00000087875.1	Gm26104	ENSMUSG00000087875.1	ENSMUST00000157250.1	snRNA	chr1:176700617-176700724
chr1	176772419	176772481	+	(TCTA)n	Simple_repeat	Simple_repeat	chr1	176772422	176772424	-	ENSMUST00000083639.1,ENSMUSG00000065573.1	Mir350	ENSMUSG00000065573.1	ENSMUST00000083639.1	miRNA	chr1:176772325-176772423
chr1	176793955	176794166	+	7SK	RNA	RNA	chr1	176793955	176793957	+	ENSMUST00000122800.1,ENSMUSG00000084749.1	Gm25288	ENSMUSG00000084749.1	ENSMUST00000122800.1	misc_RNA	chr1:176793956-176794220
chr1	176889237	176889537	-	ORR1F	LTR	ERVL-MaLR	chr1	176889506	176889508	+	ENSMUST00000195566.1,ENSMUSG00000102211.1	Gm37490	ENSMUSG00000102211.1	ENSMUST00000195566.1	TEC	chr1:176889507-176890230
chr1	176974130	176974291	-	L1Md_F2	LINE	L1	chr1	176974235	176974237	+	ENSMUST00000191687.1,ENSMUSG00000103251.1	Gm37519	ENSMUSG00000103251.1	ENSMUST00000191687.1	TEC	chr1:176974236-176976445
chr1	177248791	177248853	+	(CTG)n	Simple_repeat	Simple_repeat	chr1	177248804	177248806	-	ENSMUST00000019843.14,ENSMUSG00000019699.16	Akt3	ENSMUSG00000019699.16	ENSMUST00000019843.14	protein_coding	chr1:177020073-177248805
chr1	177258058	177258231	+	G-rich	Low_complexity	Low_complexity	chr1	177258202	177258204	-	ENSMUST00000111159.1,ENSMUSG00000019699.16	Akt3	ENSMUSG00000019699.16	ENSMUST00000111159.1	protein_coding	chr1:177022116-177258203
chr1	177442436	177442541	+	G-rich	Low_complexity	Low_complexity	chr1	177442465	177442467	+	ENSMUST00000195549.5,ENSMUSG00000063659.11	Zbtb18	ENSMUSG00000063659.11	ENSMUST00000195549.5	protein_coding	chr1:177442466-177447486
chr1	177442541	177442561	+	(GGA)n	Simple_repeat	Simple_repeat	chr1	177442543	177442545	+	ENSMUST00000194319.1,ENSMUSG00000063659.11	Zbtb18	ENSMUSG00000063659.11	ENSMUST00000194319.1	protein_coding	chr1:177442544-177447145
chr1	177796503	177796573	+	C-rich	Low_complexity	Low_complexity	chr1	177796510	177796512	-	ENSMUST00000016105.8,ENSMUSG00000015961.8	Adss	ENSMUSG00000015961.8	ENSMUST00000016105.8	protein_coding	chr1:177762962-177796511
chr1	178028032	178028139	-	U6	snRNA	snRNA	chr1	178028138	178028140	-	ENSMUST00000178972.1,ENSMUSG00000095731.1	Gm25312	ENSMUSG00000095731.1	ENSMUST00000178972.1	snRNA	chr1:178028033-178028139
chr1	178028139	178028367	-	L1_Mus3	LINE	L1	chr1	178028138	178028140	-	ENSMUST00000178972.1,ENSMUSG00000095731.1	Gm25312	ENSMUSG00000095731.1	ENSMUST00000178972.1	snRNA	chr1:178028033-178028139
chr1	178390818	178390922	+	U6	snRNA	snRNA	chr1	178390818	178390820	+	ENSMUST00000083020.1,ENSMUSG00000064954.1	Gm24919	ENSMUSG00000064954.1	ENSMUST00000083020.1	snRNA	chr1:178390819-178390924
chr1	178636904	178637070	+	U1	snRNA	snRNA	chr1	178636904	178636906	+	ENSMUST00000083033.1,ENSMUSG00000064967.1	Gm24405	ENSMUSG00000064967.1	ENSMUST00000083033.1	snRNA	chr1:178636905-178637071
chr1	179593321	179593515	+	B3	SINE	B2	chr1	179593389	179593391	+	ENSMUST00000143270.1,ENSMUSG00000038949.8	Cnst	ENSMUSG00000038949.8	ENSMUST00000143270.1	protein_coding	chr1:179593390-179605374
chr1	179975688	179976058	+	MTD	LTR	ERVL-MaLR	chr1	179975898	179975900	+	ENSMUST00000143350.7,ENSMUSG00000026490.18	Cdc42bpa	ENSMUSG00000026490.18	ENSMUST00000143350.7	protein_coding	chr1:179975899-180041641
chr1	179988404	179991040	+	Lx3_Mus	LINE	L1	chr1	179990739	179990741	+	ENSMUST00000132894.2,ENSMUSG00000026490.18	Cdc42bpa	ENSMUSG00000026490.18	ENSMUST00000132894.2	protein_coding	chr1:179990740-180038386
chr1	180147914	180148295	-	ORR1B1	LTR	ERVL-MaLR	chr1	180148150	180148152	-	ENSMUST00000195719.1,ENSMUSG00000103636.1	Gm38331	ENSMUSG00000103636.1	ENSMUST00000195719.1	TEC	chr1:180145481-180148151
chr1	180199376	180199863	+	L2a	LINE	L2	chr1	180199601	180199603	-	ENSMUST00000161743.2,ENSMUSG00000026489.13	Coq8a	ENSMUSG00000026489.13	ENSMUST00000161743.2	protein_coding	chr1:180179248-180199602
chr1	180248075	180248215	-	MTE2b	LTR	ERVL-MaLR	chr1	180248149	180248151	-	ENSMUST00000111105.7,ENSMUSG00000010609.15	Psen2	ENSMUSG00000010609.15	ENSMUST00000111105.7	protein_coding	chr1:180227443-180248150
chr1	180263359	180263498	+	B1F2	SINE	Alu	chr1	180263437	180263439	-	ENSMUST00000133340.1,ENSMUSG00000010609.15	Psen2	ENSMUSG00000010609.15	ENSMUST00000133340.1	protein_coding	chr1:180245638-180263438
chr1	180679449	180679585	+	B1_Mus2	SINE	Alu	chr1	180679459	180679461	+	ENSMUST00000193162.5,ENSMUSG00000058729.13	Lin9	ENSMUSG00000058729.13	ENSMUST00000193162.5	protein_coding	chr1:180679460-180688867
chr1	180680705	180680897	+	B3A	SINE	B2	chr1	180680886	180680888	+	ENSMUST00000194847.1,ENSMUSG00000058729.13	Lin9	ENSMUSG00000058729.13	ENSMUST00000194847.1	protein_coding	chr1:180680887-180690687
chr1	180755779	180755936	+	RSINE1	SINE	B4	chr1	180755835	180755837	-	ENSMUST00000192748.1,ENSMUSG00000103649.1	Gm37768	ENSMUSG00000103649.1	ENSMUST00000192748.1	antisense	chr1:180743210-180755836
chr1	180813596	180813619	+	GC_rich	Low_complexity	Low_complexity	chr1	180813602	180813604	-	ENSMUST00000159441.7,ENSMUSG00000060743.12	H3f3a	ENSMUSG00000060743.12	ENSMUST00000159441.7	protein_coding	chr1:180809748-180813603
chr1	180813596	180813619	+	GC_rich	Low_complexity	Low_complexity	chr1	180813602	180813604	-	ENSMUST00000162118.7,ENSMUSG00000060743.12	H3f3a	ENSMUSG00000060743.12	ENSMUST00000162118.7	protein_coding	chr1:180810233-180813603
chr1	180813596	180813619	+	GC_rich	Low_complexity	Low_complexity	chr1	180813602	180813604	-	ENSMUST00000159685.1,ENSMUSG00000060743.12	H3f3a	ENSMUSG00000060743.12	ENSMUST00000159685.1	protein_coding	chr1:180810241-180813603
chr1	180813917	180813997	+	GC_rich	Low_complexity	Low_complexity	chr1	180813942	180813944	-	ENSMUST00000162814.7,ENSMUSG00000060743.12	H3f3a	ENSMUSG00000060743.12	ENSMUST00000162814.7	protein_coding	chr1:180803024-180813943
chr1	180832768	180832874	+	U6	snRNA	snRNA	chr1	180832768	180832770	+	ENSMUST00000122609.1,ENSMUSG00000084558.1	Gm24836	ENSMUSG00000084558.1	ENSMUST00000122609.1	snRNA	chr1:180832769-180832876
chr1	180861947	180862118	+	B2_Mm2	SINE	B2	chr1	180862099	180862101	+	ENSMUST00000194948.1,ENSMUSG00000038806.7	Sde2	ENSMUSG00000038806.7	ENSMUST00000194948.1	protein_coding	chr1:180862100-180866253
chr1	181026240	181026779	+	MMERVK9E_I-int	LTR	ERVK	chr1	181026277	181026279	+	ENSMUST00000193082.1,ENSMUSG00000102858.1	Gm37086	ENSMUSG00000102858.1	ENSMUST00000193082.1	TEC	chr1:181026278-181029729
chr1	181138636	181138778	+	B1_Mm	SINE	Alu	chr1	181138681	181138683	-	ENSMUST00000193758.1,ENSMUSG00000026516.8	Nvl	ENSMUSG00000026516.8	ENSMUST00000193758.1	protein_coding	chr1:181136154-181138682
chr1	181225835	181226014	-	B2_Mm2	SINE	B2	chr1	181225985	181225987	+	ENSMUST00000181680.1,ENSMUSG00000054135.2	A430110L20Rik	ENSMUSG00000054135.2	ENSMUST00000181680.1	lincRNA	chr1:181225986-181228498
chr1	181813062	181813605	-	L1_Mus1	LINE	L1	chr1	181813457	181813459	+	ENSMUST00000195808.1,ENSMUSG00000047369.15	Dnah14	ENSMUSG00000047369.15	ENSMUST00000195808.1	protein_coding	chr1:181813458-181815774
chr1	181813606	181813700	-	U6	snRNA	snRNA	chr1	181813699	181813701	-	ENSMUST00000083036.1,ENSMUSG00000064970.1	Gm23690	ENSMUSG00000064970.1	ENSMUST00000083036.1	snRNA	chr1:181813607-181813700
chr1	181820530	181820553	+	AT_rich	Low_complexity	Low_complexity	chr1	181820541	181820543	-	ENSMUST00000192075.1,ENSMUSG00000004880.11	Lbr	ENSMUSG00000004880.11	ENSMUST00000192075.1	protein_coding	chr1:181815356-181820542
chr1	181829036	181829244	+	B3	SINE	B2	chr1	181829153	181829155	-	ENSMUST00000194302.1,ENSMUSG00000004880.11	Lbr	ENSMUSG00000004880.11	ENSMUST00000194302.1	protein_coding	chr1:181821557-181829154
chr1	181840459	181840568	-	5S	rRNA	rRNA	chr1	181840567	181840569	-	ENSMUST00000158804.1,ENSMUSG00000089429.1	Gm26004	ENSMUSG00000089429.1	ENSMUST00000158804.1	rRNA	chr1:181840453-181840568
chr1	181912499	181912683	-	B3	SINE	B2	chr1	181912596	181912598	-	ENSMUST00000192768.1,ENSMUSG00000022995.16	Enah	ENSMUSG00000022995.16	ENSMUST00000192768.1	protein_coding	chr1:181910708-181912597
chr1	181990173	181990220	+	(CA)n	Simple_repeat	Simple_repeat	chr1	181990203	181990205	-	ENSMUST00000192441.1,ENSMUSG00000102950.1	Gm37018	ENSMUSG00000102950.1	ENSMUST00000192441.1	TEC	chr1:181986336-181990204
chr1	182007637	182007785	+	B1_Mm	SINE	Alu	chr1	182007685	182007687	-	ENSMUST00000191734.1,ENSMUSG00000102760.1	Gm37258	ENSMUSG00000102760.1	ENSMUST00000191734.1	TEC	chr1:182006060-182007686
chr1	182019968	182020006	+	GC_rich	Low_complexity	Low_complexity	chr1	182019989	182019991	-	ENSMUST00000111024.9,ENSMUSG00000022995.16	Enah	ENSMUSG00000022995.16	ENSMUST00000111024.9	protein_coding	chr1:181904400-182019990
chr1	182019968	182020006	+	GC_rich	Low_complexity	Low_complexity	chr1	182019979	182019981	-	ENSMUST00000177811.7,ENSMUSG00000022995.16	Enah	ENSMUSG00000022995.16	ENSMUST00000177811.7	protein_coding	chr1:181904445-182019980
chr1	182019968	182020006	+	GC_rich	Low_complexity	Low_complexity	chr1	182019979	182019981	-	ENSMUST00000111025.7,ENSMUSG00000022995.16	Enah	ENSMUSG00000022995.16	ENSMUST00000111025.7	protein_coding	chr1:181904445-182019980
chr1	182130682	182130745	+	L1Md_A	LINE	L1	chr1	182130698	182130700	+	ENSMUST00000193005.1,ENSMUSG00000026511.7	Srp9	ENSMUSG00000026511.7	ENSMUST00000193005.1	protein_coding	chr1:182130699-182131805
chr1	182687472	182687914	+	RLTR31B2	LTR	ERVK	chr1	182687729	182687731	+	ENSMUST00000192917.1,ENSMUSG00000102688.1	Gm37218	ENSMUSG00000102688.1	ENSMUST00000192917.1	lincRNA	chr1:182687730-182688228
chr1	182763814	182763891	+	(TG)n	Simple_repeat	Simple_repeat	chr1	182763859	182763861	+	ENSMUST00000155229.6,ENSMUSG00000038576.15	Susd4	ENSMUSG00000038576.15	ENSMUST00000155229.6	protein_coding	chr1:182763860-182854040
chr1	182907626	182907968	+	Arthur1	DNA	hAT-Tip100	chr1	182907709	182907711	+	ENSMUST00000192563.1,ENSMUSG00000102291.1	Gm37542	ENSMUSG00000102291.1	ENSMUST00000192563.1	TEC	chr1:182907710-182910541
chr1	182972013	182972319	-	ORR1C2	LTR	ERVL-MaLR	chr1	182972176	182972178	+	ENSMUST00000191820.1,ENSMUSG00000079164.8	Tlr5	ENSMUSG00000079164.8	ENSMUST00000191820.1	protein_coding	chr1:182972177-182975994
chr1	183074537	183074931	+	MTA_Mm	LTR	ERVL-MaLR	chr1	183074605	183074607	+	ENSMUST00000178492.2,ENSMUSG00000094807.2	Gm24975	ENSMUSG00000094807.2	ENSMUST00000178492.2	miRNA	chr1:183074606-183074706
chr1	183295781	183296266	+	Lx3_Mus	LINE	L1	chr1	183295851	183295853	-	ENSMUST00000192829.1,ENSMUSG00000046836.13	Brox	ENSMUSG00000046836.13	ENSMUST00000192829.1	protein_coding	chr1:183291937-183295852
chr1	184013293	184013361	+	MIRb	SINE	MIR	chr1	184013301	184013303	+	ENSMUST00000139839.1,ENSMUSG00000039384.8	Dusp10	ENSMUSG00000039384.8	ENSMUST00000139839.1	protein_coding	chr1:184013302-184037274
chr1	184382382	184382550	+	Lx8b	LINE	L1	chr1	184382440	184382442	-	ENSMUST00000194295.1,ENSMUSG00000102794.1	Gm37712	ENSMUSG00000102794.1	ENSMUST00000194295.1	lincRNA	chr1:184376344-184382441
chr1	184712186	184712667	-	RLTR11A	LTR	ERVK	chr1	184712496	184712498	+	ENSMUST00000172500.1,ENSMUSG00000092578.1	4930488B22Rik	ENSMUSG00000092578.1	ENSMUST00000172500.1	lincRNA	chr1:184712497-184718989
chr1	184808823	184809245	-	L1MB4	LINE	L1	chr1	184808852	184808854	-	ENSMUST00000189492.1,ENSMUSG00000026621.13	Marc1	ENSMUSG00000026621.13	ENSMUST00000189492.1	protein_coding	chr1:184787289-184808853
chr1	184858203	184858429	-	7SK	RNA	RNA	chr1	184858411	184858413	-	ENSMUST00000157937.2,ENSMUSG00000088562.2	Gm23780	ENSMUSG00000088562.2	ENSMUST00000157937.2	misc_RNA	chr1:184858138-184858412
chr1	184999494	184999667	+	GC_rich	Low_complexity	Low_complexity	chr1	184999569	184999571	-	ENSMUST00000027929.9,ENSMUSG00000026620.11	Mark1	ENSMUSG00000026620.11	ENSMUST00000027929.9	protein_coding	chr1:184896789-184999570
chr1	185085913	185086289	+	ORR1C2	LTR	ERVL-MaLR	chr1	185085963	185085965	-	ENSMUST00000195441.1,ENSMUSG00000103942.1	Gm34732	ENSMUSG00000103942.1	ENSMUST00000195441.1	lincRNA	chr1:185082738-185085964
chr1	185085913	185086289	+	ORR1C2	LTR	ERVL-MaLR	chr1	185086101	185086103	+	ENSMUST00000194719.1,ENSMUSG00000103478.1	4930433J02Rik	ENSMUSG00000103478.1	ENSMUST00000194719.1	lincRNA	chr1:185086102-185091319
chr1	185277482	185278002	-	RLTR31_Mm	LTR	ERVK	chr1	185277797	185277799	+	ENSMUST00000195534.1,ENSMUSG00000039318.12	Rab3gap2	ENSMUSG00000039318.12	ENSMUST00000195534.1	protein_coding	chr1:185277798-185281695
chr1	185365459	185365720	-	Lx5	LINE	L1	chr1	185365470	185365472	+	ENSMUST00000194157.5,ENSMUSG00000026615.14	Eprs	ENSMUSG00000026615.14	ENSMUST00000194157.5	protein_coding	chr1:185365471-185373430
chr1	185399568	185399748	-	B2_Mm2	SINE	B2	chr1	185399657	185399659	+	ENSMUST00000192049.1,ENSMUSG00000026615.14	Eprs	ENSMUSG00000026615.14	ENSMUST00000192049.1	protein_coding	chr1:185399658-185403539
chr1	186122798	186123203	-	L1_Mus2	LINE	L1	chr1	186123200	186123202	+	ENSMUST00000158738.1,ENSMUSG00000089363.1	Gm23821	ENSMUSG00000089363.1	ENSMUST00000158738.1	rRNA	chr1:186123201-186123306
chr1	187083849	187084244	-	MT2B1	LTR	ERVL	chr1	187083883	187083885	-	ENSMUST00000201137.1,ENSMUSG00000106839.1	Gm43497	ENSMUSG00000106839.1	ENSMUST00000201137.1	TEC	chr1:187081569-187083884
chr1	187091066	187091172	-	L1M2	LINE	L1	chr1	187091159	187091161	-	ENSMUST00000201682.1,ENSMUSG00000107163.1	Gm43496	ENSMUSG00000107163.1	ENSMUST00000201682.1	TEC	chr1:187088160-187091160
chr1	187125130	187125424	+	L1MCa	LINE	L1	chr1	187125137	187125139	+	ENSMUST00000160380.2,ENSMUSG00000089730.2	1700007P06Rik	ENSMUSG00000089730.2	ENSMUST00000160380.2	antisense	chr1:187125138-187127852
chr1	187236171	187236705	-	Tigger17a	DNA	TcMar-Tigger	chr1	187236456	187236458	+	ENSMUST00000193542.2,ENSMUSG00000104394.2	Gm37254	ENSMUSG00000104394.2	ENSMUST00000193542.2	TEC	chr1:187236457-187240357
chr1	188760472	188760552	+	U6	snRNA	snRNA	chr1	188760475	188760477	+	ENSMUST00000122601.1,ENSMUSG00000084550.1	Gm25269	ENSMUSG00000084550.1	ENSMUST00000122601.1	snRNA	chr1:188760476-188760579
chr1	189393096	189393583	+	MT2_Mm	LTR	ERVL	chr1	189393349	189393351	+	ENSMUST00000180257.1,ENSMUSG00000093791.1	Gm24092	ENSMUSG00000093791.1	ENSMUST00000180257.1	miRNA	chr1:189393350-189393470
chr1	189640228	189640273	+	C-rich	Low_complexity	Low_complexity	chr1	189640233	189640235	-	ENSMUST00000192679.1,ENSMUSG00000103087.1	Gm38122	ENSMUSG00000103087.1	ENSMUST00000192679.1	TEC	chr1:189639350-189640234
chr1	189915956	189916007	+	C-rich	Low_complexity	Low_complexity	chr1	189915958	189915960	-	ENSMUST00000191702.1,ENSMUSG00000103467.1	Gm38245	ENSMUSG00000103467.1	ENSMUST00000191702.1	TEC	chr1:189913339-189915959
chr1	190170296	190170359	+	CT-rich	Low_complexity	Low_complexity	chr1	190170295	190170297	+	ENSMUST00000110279.3,ENSMUSG00000079045.3	Prox1os	ENSMUSG00000079045.3	ENSMUST00000110279.3	antisense	chr1:190170296-190217276
chr1	190482942	190483152	-	7SLRNA	srpRNA	srpRNA	chr1	190483015	190483017	-	ENSMUST00000198711.1,ENSMUSG00000106474.1	Gm47294	ENSMUSG00000106474.1	ENSMUST00000198711.1	miRNA	chr1:190482929-190483016
chr1	190924967	190925310	+	MTB_Mm	LTR	ERVL-MaLR	chr1	190925111	190925113	+	ENSMUST00000027947.12,ENSMUSG00000026634.16	Angel2	ENSMUSG00000026634.16	ENSMUST00000027947.12	protein_coding	chr1:190925112-190946962
chr1	190928804	190928842	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	190928821	190928823	+	ENSMUST00000135364.6,ENSMUSG00000026634.16	Angel2	ENSMUSG00000026634.16	ENSMUST00000135364.6	protein_coding	chr1:190928822-190937702
chr1	191059397	191059524	+	B1_Mus2	SINE	Alu	chr1	191059440	191059442	-	ENSMUST00000124497.1,ENSMUSG00000026632.17	Tatdn3	ENSMUSG00000026632.17	ENSMUST00000124497.1	protein_coding	chr1:191057899-191059441
chr1	191078533	191078884	-	ORR1B2	LTR	ERVL-MaLR	chr1	191078679	191078681	-	ENSMUST00000192879.1,ENSMUSG00000103576.1	Gm38188	ENSMUSG00000103576.1	ENSMUST00000192879.1	antisense	chr1:191077825-191078680
chr1	191098233	191098411	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	191098324	191098326	+	ENSMUST00000027943.5,ENSMUSG00000026630.9	Batf3	ENSMUSG00000026630.9	ENSMUST00000027943.5	protein_coding	chr1:191098325-191108943
chr1	191098233	191098411	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr1	191098382	191098384	+	ENSMUST00000192268.1,ENSMUSG00000026630.9	Batf3	ENSMUSG00000026630.9	ENSMUST00000192268.1	protein_coding	chr1:191098383-191108486
chr1	191100474	191100552	-	ID4_	SINE	ID	chr1	191100476	191100478	+	ENSMUST00000191621.1,ENSMUSG00000026630.9	Batf3	ENSMUSG00000026630.9	ENSMUST00000191621.1	protein_coding	chr1:191100477-191108909
chr1	191196905	191197013	+	7SK	RNA	RNA	chr1	191196905	191196907	+	ENSMUST00000157836.1,ENSMUSG00000088461.1	Gm24748	ENSMUSG00000088461.1	ENSMUST00000157836.1	misc_RNA	chr1:191196906-191197013
chr1	191536134	191536912	+	RMER12	LTR	ERVK	chr1	191536891	191536893	-	ENSMUST00000192556.1,ENSMUSG00000102246.1	9430037O13Rik	ENSMUSG00000102246.1	ENSMUST00000192556.1	TEC	chr1:191535885-191536892
chr1	191597447	191597667	+	URR1B	DNA	hAT-Charlie	chr1	191597646	191597648	+	ENSMUST00000194205.1,ENSMUSG00000102970.1	Gm37349	ENSMUSG00000102970.1	ENSMUST00000194205.1	TEC	chr1:191597647-191598270
chr1	191718025	191718047	+	GC_rich	Low_complexity	Low_complexity	chr1	191718026	191718028	+	ENSMUST00000138494.1,ENSMUSG00000026623.16	Lpgat1	ENSMUSG00000026623.16	ENSMUST00000138494.1	protein_coding	chr1:191718027-191719786
chr1	191762202	191762303	-	U6	snRNA	snRNA	chr1	191762302	191762304	-	ENSMUST00000180108.1,ENSMUSG00000095504.1	Gm22446	ENSMUSG00000095504.1	ENSMUST00000180108.1	snRNA	chr1:191762200-191762303
chr1	191821973	191822069	-	MTEa	LTR	ERVL-MaLR	chr1	191821992	191821994	-	ENSMUST00000192600.1,ENSMUSG00000102840.1	Gm38037	ENSMUSG00000102840.1	ENSMUST00000192600.1	antisense	chr1:191820370-191821993
chr1	191907494	191907544	+	GC_rich	Low_complexity	Low_complexity	chr1	191907518	191907520	-	ENSMUST00000139827.7,ENSMUSG00000055833.14	1700034H15Rik	ENSMUSG00000055833.14	ENSMUST00000139827.7	antisense	chr1:191894072-191907519
chr1	191907494	191907544	+	GC_rich	Low_complexity	Low_complexity	chr1	191907526	191907528	-	ENSMUST00000069573.5,ENSMUSG00000055833.14	1700034H15Rik	ENSMUSG00000055833.14	ENSMUST00000069573.5	antisense	chr1:191899970-191907527
chr1	191998610	191998799	+	B2_Mm2	SINE	B2	chr1	191998617	191998619	-	ENSMUST00000194408.1,ENSMUSG00000026637.13	Traf5	ENSMUSG00000026637.13	ENSMUST00000194408.1	protein_coding	chr1:191997205-191998618
chr1	191998610	191998799	+	B2_Mm2	SINE	B2	chr1	191998633	191998635	-	ENSMUST00000175262.1,ENSMUSG00000093003.1	Mir3473c	ENSMUSG00000093003.1	ENSMUST00000175262.1	miRNA	chr1:191998554-191998634
chr1	192137573	192137735	+	G-rich	Low_complexity	Low_complexity	chr1	192137659	192137661	-	ENSMUST00000193144.1,ENSMUSG00000037395.15	Rcor3	ENSMUSG00000037395.15	ENSMUST00000193144.1	protein_coding	chr1:192127990-192137660
chr1	192137902	192137981	+	G-rich	Low_complexity	Low_complexity	chr1	192137926	192137928	-	ENSMUST00000192128.5,ENSMUSG00000037395.15	Rcor3	ENSMUSG00000037395.15	ENSMUST00000192128.5	protein_coding	chr1:192101388-192137927
chr1	192138029	192138106	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	192138039	192138041	-	ENSMUST00000073279.12,ENSMUSG00000037395.15	Rcor3	ENSMUSG00000037395.15	ENSMUST00000073279.12	protein_coding	chr1:192098561-192138040
chr1	192138029	192138106	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	192138030	192138032	-	ENSMUST00000192158.5,ENSMUSG00000037395.15	Rcor3	ENSMUSG00000037395.15	ENSMUST00000192158.5	protein_coding	chr1:192098771-192138031
chr1	192138029	192138106	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	192138061	192138063	-	ENSMUST00000192866.5,ENSMUSG00000037395.15	Rcor3	ENSMUSG00000037395.15	ENSMUST00000192866.5	protein_coding	chr1:192100787-192138062
chr1	192138029	192138106	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr1	192138034	192138036	-	ENSMUST00000194493.1,ENSMUSG00000037395.15	Rcor3	ENSMUSG00000037395.15	ENSMUST00000194493.1	protein_coding	chr1:192134198-192138035
chr1	192687505	192687915	-	MTB_Mm	LTR	ERVL-MaLR	chr1	192687705	192687707	-	ENSMUST00000123721.1,ENSMUSG00000037375.16	Hhat	ENSMUSG00000037375.16	ENSMUST00000123721.1	protein_coding	chr1:192654960-192687706
chr1	192745570	192745687	+	U5	snRNA	snRNA	chr1	192745570	192745572	+	ENSMUST00000082947.1,ENSMUSG00000094131.1	Gm22265	ENSMUSG00000094131.1	ENSMUST00000082947.1	snRNA	chr1:192745571-192745686
chr1	192841657	192841861	+	B4A	SINE	B4	chr1	192841660	192841662	+	ENSMUST00000190576.2,ENSMUSG00000100872.2	1700065J18Rik	ENSMUSG00000100872.2	ENSMUST00000190576.2	lincRNA	chr1:192841661-192842734
chr1	192841657	192841861	+	B4A	SINE	B4	chr1	192841670	192841672	+	ENSMUST00000188648.1,ENSMUSG00000100872.2	1700065J18Rik	ENSMUSG00000100872.2	ENSMUST00000188648.1	lincRNA	chr1:192841671-192842740
chr1	192855460	192855571	+	(CCG)n	Simple_repeat	Simple_repeat	chr1	192855485	192855487	-	ENSMUST00000125391.1,ENSMUSG00000016262.14	Sertad4	ENSMUSG00000016262.14	ENSMUST00000125391.1	protein_coding	chr1:192854202-192855486
chr1	192855710	192855840	+	C-rich	Low_complexity	Low_complexity	chr1	192855755	192855757	-	ENSMUST00000155579.7,ENSMUSG00000016262.14	Sertad4	ENSMUSG00000016262.14	ENSMUST00000155579.7	protein_coding	chr1:192844488-192855756
chr1	193115294	193115410	+	B1F	SINE	Alu	chr1	193115377	193115379	-	ENSMUST00000193070.1,ENSMUSG00000016181.9	Diexf	ENSMUSG00000016181.9	ENSMUST00000193070.1	protein_coding	chr1:193107753-193115378
chr1	193201653	193201850	+	ID_B1	SINE	B4	chr1	193201702	193201704	-	ENSMUST00000162905.1,ENSMUSG00000037318.10	Traf3ip3	ENSMUSG00000037318.10	ENSMUST00000162905.1	protein_coding	chr1:193200896-193201703
chr1	193202930	193203269	+	ORR1F	LTR	ERVL-MaLR	chr1	193203037	193203039	+	ENSMUST00000159273.2,ENSMUSG00000089683.2	4930570N18Rik	ENSMUSG00000089683.2	ENSMUST00000159273.2	antisense	chr1:193203038-193226208
chr1	193207624	193207939	+	ORR1B1	LTR	ERVL-MaLR	chr1	193207698	193207700	+	ENSMUST00000194407.1,ENSMUSG00000026639.18	Lamb3	ENSMUSG00000026639.18	ENSMUST00000194407.1	protein_coding	chr1:193207699-193208938
chr1	193207624	193207939	+	ORR1B1	LTR	ERVL-MaLR	chr1	193207724	193207726	+	ENSMUST00000194677.5,ENSMUSG00000026639.18	Lamb3	ENSMUSG00000026639.18	ENSMUST00000194677.5	protein_coding	chr1:193207725-193343878
chr1	193207624	193207939	+	ORR1B1	LTR	ERVL-MaLR	chr1	193207731	193207733	+	ENSMUST00000192322.5,ENSMUSG00000026639.18	Lamb3	ENSMUSG00000026639.18	ENSMUST00000192322.5	protein_coding	chr1:193207732-193325992
chr1	193207624	193207939	+	ORR1B1	LTR	ERVL-MaLR	chr1	193207749	193207751	+	ENSMUST00000162977.1,ENSMUSG00000026639.18	Lamb3	ENSMUSG00000026639.18	ENSMUST00000162977.1	protein_coding	chr1:193207750-193254474
chr1	193242627	193242707	+	G-rich	Low_complexity	Low_complexity	chr1	193242628	193242630	-	ENSMUST00000016338.14,ENSMUSG00000016194.14	Hsd11b1	ENSMUSG00000016194.14	ENSMUST00000016338.14	protein_coding	chr1:193221634-193242629
chr1	193493072	193493704	+	L1Md_T	LINE	L1	chr1	193493586	193493588	+	ENSMUST00000194074.1,ENSMUSG00000102981.1	Gm38322	ENSMUSG00000102981.1	ENSMUST00000194074.1	TEC	chr1:193493587-193495886
chr1	194669639	194669749	-	RLTR17B_Mm	LTR	ERVK	chr1	194669672	194669674	+	ENSMUST00000194177.1,ENSMUSG00000102621.1	Gm37674	ENSMUSG00000102621.1	ENSMUST00000194177.1	TEC	chr1:194669673-194671506
chr1	194676529	194677226	-	L1MA4A	LINE	L1	chr1	194677001	194677003	+	ENSMUST00000194586.1,ENSMUSG00000102841.1	Gm38036	ENSMUSG00000102841.1	ENSMUST00000194586.1	TEC	chr1:194677002-194680565
chr1	194804687	194804736	+	(TG)n	Simple_repeat	Simple_repeat	chr1	194804709	194804711	+	ENSMUST00000124785.1,ENSMUSG00000026640.12	Plxna2	ENSMUSG00000026640.12	ENSMUST00000124785.1	protein_coding	chr1:194804710-194814227
chr1	194821980	194822183	+	MIRb	SINE	MIR	chr1	194822000	194822002	+	ENSMUST00000174892.1,ENSMUSG00000092633.1	Mir3962	ENSMUSG00000092633.1	ENSMUST00000174892.1	miRNA	chr1:194822001-194822064
chr1	194858656	194858899	+	7SK	RNA	RNA	chr1	194858656	194858658	+	ENSMUST00000122682.1,ENSMUSG00000084631.1	Gm23885	ENSMUSG00000084631.1	ENSMUST00000122682.1	misc_RNA	chr1:194858657-194858950
chr1	195068962	195069465	+	Lx	LINE	L1	chr1	195069113	195069115	-	ENSMUST00000161772.7,ENSMUSG00000016493.13	Cd46	ENSMUSG00000016493.13	ENSMUST00000161772.7	protein_coding	chr1:195041835-195069114
chr1	195081141	195081855	-	L1ME1	LINE	L1	chr1	195081335	195081337	-	ENSMUST00000195553.1,ENSMUSG00000103443.1	Gm37132	ENSMUSG00000103443.1	ENSMUST00000195553.1	TEC	chr1:195079099-195081336
chr1	195107300	195107463	+	MER2	DNA	TcMar-Tigger	chr1	195107367	195107369	-	ENSMUST00000194732.1,ENSMUSG00000016481.15	Cr1l	ENSMUSG00000016481.15	ENSMUST00000194732.1	protein_coding	chr1:195103694-195107368
chr1	195228077	195228511	+	MT2_Mm	LTR	ERVL	chr1	195228277	195228279	+	ENSMUST00000178897.1,ENSMUSG00000093823.1	Gm24802	ENSMUSG00000093823.1	ENSMUST00000178897.1	miRNA	chr1:195228278-195228398
chr1	195255398	195261753	-	ETnERV-int	LTR	ERVK	chr1	195259847	195259849	-	ENSMUST00000192733.1,ENSMUSG00000104297.1	Gm38046	ENSMUSG00000104297.1	ENSMUST00000192733.1	TEC	chr1:195259299-195259848
chr1	195320657	195327090	+	IAPEz-int	LTR	ERVK	chr1	195321282	195321284	+	ENSMUST00000194529.1,ENSMUSG00000102307.1	Gm38194	ENSMUSG00000102307.1	ENSMUST00000194529.1	TEC	chr1:195321283-195323493
chr10	3131340	3133834	+	L1_Mus3	LINE	L1	chr10	3133192	3133194	-	ENSMUST00000217333.1,ENSMUSG00000110909.1	B020014A21Rik	ENSMUSG00000110909.1	ENSMUST00000217333.1	lincRNA	chr10:3125091-3133193
chr10	3141043	3141291	-	RLTR17	LTR	ERVK	chr10	3141057	3141059	-	ENSMUST00000216363.1,ENSMUSG00000111242.1	Gm8155	ENSMUSG00000111242.1	ENSMUST00000216363.1	processed_pseudogene	chr10:3139447-3141058
chr10	4104313	4104475	+	U1	snRNA	snRNA	chr10	4104312	4104314	+	ENSMUST00000083858.1,ENSMUSG00000065792.1	Gm25515	ENSMUSG00000065792.1	ENSMUST00000083858.1	snRNA	chr10:4104313-4104469
chr10	4169887	4170019	+	U8	snRNA	snRNA	chr10	4169886	4169888	+	ENSMUST00000158848.1,ENSMUSG00000089473.1	Gm25369	ENSMUSG00000089473.1	ENSMUST00000158848.1	snoRNA	chr10:4169887-4170018
chr10	4213037	4213145	-	B1_Mur1	SINE	Alu	chr10	4213113	4213115	-	ENSMUST00000213553.1,ENSMUSG00000111266.1	Gm30570	ENSMUSG00000111266.1	ENSMUST00000213553.1	lincRNA	chr10:4206426-4213114
chr10	4213041	4213157	-	B4A	SINE	B4	chr10	4213113	4213115	-	ENSMUST00000213553.1,ENSMUSG00000111266.1	Gm30570	ENSMUSG00000111266.1	ENSMUST00000213553.1	lincRNA	chr10:4206426-4213114
chr10	4391523	4391644	-	ID_B1	SINE	B4	chr10	4391586	4391588	+	ENSMUST00000178920.1,ENSMUSG00000095123.1	Gm21781	ENSMUSG00000095123.1	ENSMUST00000178920.1	lincRNA	chr10:4391587-4396424
chr10	4409018	4409042	+	(TTTTG)n	Simple_repeat	Simple_repeat	chr10	4409032	4409034	+	ENSMUST00000132184.1,ENSMUSG00000085687.1	Gm16153	ENSMUSG00000085687.1	ENSMUST00000132184.1	processed_transcript	chr10:4409033-4423369
chr10	4413684	4413749	+	L1M5	LINE	L1	chr10	4413744	4413746	-	ENSMUST00000137429.1,ENSMUSG00000019763.11	Rmnd1	ENSMUSG00000019763.11	ENSMUST00000137429.1	protein_coding	chr10:4403984-4413745
chr10	4434542	4434617	-	PB1D11	SINE	Alu	chr10	4434580	4434582	+	ENSMUST00000131636.1,ENSMUSG00000061759.15	Armt1	ENSMUSG00000061759.15	ENSMUST00000131636.1	protein_coding	chr10:4434581-4440469
chr10	4483908	4484248	+	ORR1B1	LTR	ERVL-MaLR	chr10	4484233	4484235	+	ENSMUST00000083437.1,ENSMUSG00000065371.1	Gm22739	ENSMUSG00000065371.1	ENSMUST00000083437.1	snRNA	chr10:4484234-4484393
chr10	4511532	4511760	-	B4	SINE	B4	chr10	4511542	4511544	+	ENSMUST00000145465.2,ENSMUSG00000019767.12	Ccdc170	ENSMUSG00000019767.12	ENSMUST00000145465.2	protein_coding	chr10:4511543-4514312
chr10	4935652	4937599	+	RLTR10-int	LTR	ERVK	chr10	4936525	4936527	+	ENSMUST00000137012.1,ENSMUSG00000019768.16	Esr1	ENSMUSG00000019768.16	ENSMUST00000137012.1	protein_coding	chr10:4936526-5001656
chr10	5036412	5036582	-	MTB_Mm	LTR	ERVL-MaLR	chr10	5036455	5036457	-	ENSMUST00000175448.1,ENSMUSG00000093189.1	Gm25694	ENSMUSG00000093189.1	ENSMUST00000175448.1	ribozyme	chr10:5036175-5036456
chr10	5089785	5095646	+	L1Md_T	LINE	L1	chr10	5091285	5091287	-	ENSMUST00000220298.1,ENSMUSG00000111890.1	Gm48836	ENSMUSG00000111890.1	ENSMUST00000220298.1	processed_pseudogene	chr10:5091006-5091286
chr10	5142527	5142603	+	(TCCC)n	Simple_repeat	Simple_repeat	chr10	5142527	5142529	-	ENSMUST00000215021.1,ENSMUSG00000096054.3	Syne1	ENSMUSG00000096054.3	ENSMUST00000215021.1	protein_coding	chr10:5131014-5142528
chr10	5357172	5357279	+	U6	snRNA	snRNA	chr10	5357172	5357174	+	ENSMUST00000104408.1,ENSMUSG00000094906.1	Gm23573	ENSMUSG00000094906.1	ENSMUST00000104408.1	snRNA	chr10:5357173-5357279
chr10	6761755	6761792	+	(TTG)n	Simple_repeat	Simple_repeat	chr10	6761760	6761762	-	ENSMUST00000105596.1,ENSMUSG00000078488.1	Gm10945	ENSMUSG00000078488.1	ENSMUST00000105596.1	protein_coding	chr10:6740629-6761761
chr10	7651465	7651662	+	B2_Mm1t	SINE	B2	chr10	7651535	7651537	-	ENSMUST00000159835.7,ENSMUSG00000019795.17	Pcmt1	ENSMUSG00000019795.17	ENSMUST00000159835.7	protein_coding	chr10:7647594-7651536
chr10	7761061	7761157	+	B1F	SINE	Alu	chr10	7761098	7761100	-	ENSMUST00000174654.1,ENSMUSG00000092190.1	Gm20470	ENSMUSG00000092190.1	ENSMUST00000174654.1	processed_transcript	chr10:7743520-7761099
chr10	7780184	7780234	+	(CA)n	Simple_repeat	Simple_repeat	chr10	7780184	7780186	+	ENSMUST00000180853.1,ENSMUSG00000085211.2	B430219N15Rik	ENSMUSG00000085211.2	ENSMUST00000180853.1	antisense	chr10:7780185-7781289
chr10	7780891	7780969	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	7780916	7780918	-	ENSMUST00000039763.13,ENSMUSG00000040006.13	Ginm1	ENSMUSG00000040006.13	ENSMUST00000039763.13	protein_coding	chr10:7767947-7780917
chr10	7780891	7780969	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	7780890	7780892	-	ENSMUST00000124838.1,ENSMUSG00000040006.13	Ginm1	ENSMUSG00000040006.13	ENSMUST00000124838.1	protein_coding	chr10:7767956-7780891
chr10	7836226	7836412	-	B3	SINE	B2	chr10	7836380	7836382	+	ENSMUST00000175319.1,ENSMUSG00000093060.1	Mir5104	ENSMUSG00000093060.1	ENSMUST00000175319.1	miRNA	chr10:7836381-7836474
chr10	7955804	7955905	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	7955892	7955894	-	ENSMUST00000147938.1,ENSMUSG00000015755.16	Tab2	ENSMUSG00000015755.16	ENSMUST00000147938.1	protein_coding	chr10:7911492-7955893
chr10	7956112	7956237	+	C-rich	Low_complexity	Low_complexity	chr10	7956229	7956231	-	ENSMUST00000146444.7,ENSMUSG00000015755.16	Tab2	ENSMUSG00000015755.16	ENSMUST00000146444.7	protein_coding	chr10:7905653-7956230
chr10	8021038	8021594	-	RMER15	LTR	ERVL	chr10	8021291	8021293	-	ENSMUST00000218165.1,ENSMUSG00000112360.1	Gm48614	ENSMUSG00000112360.1	ENSMUST00000218165.1	lincRNA	chr10:8001943-8021292
chr10	8642933	8643036	+	U6	snRNA	snRNA	chr10	8642933	8642935	+	ENSMUST00000104394.1,ENSMUSG00000077582.1	Gm24374	ENSMUSG00000077582.1	ENSMUST00000104394.1	snRNA	chr10:8642934-8643039
chr10	8713020	8713376	-	MT2B1	LTR	ERVL	chr10	8713240	8713242	+	ENSMUST00000213934.1,ENSMUSG00000111215.1	Gm48654	ENSMUSG00000111215.1	ENSMUST00000213934.1	lincRNA	chr10:8713241-8717073
chr10	8824142	8824180	+	(TG)n	Simple_repeat	Simple_repeat	chr10	8824146	8824148	-	ENSMUST00000083758.1,ENSMUSG00000065692.1	Gm25410	ENSMUSG00000065692.1	ENSMUST00000083758.1	snoRNA	chr10:8824011-8824147
chr10	8884429	8884658	-	MIRb	SINE	MIR	chr10	8884636	8884638	+	ENSMUST00000180770.2,ENSMUSG00000097597.2	Gm26674	ENSMUSG00000097597.2	ENSMUST00000180770.2	antisense	chr10:8884637-8886878
chr10	8951779	8951988	-	Lx9	LINE	L1	chr10	8951948	8951950	+	ENSMUST00000213841.1,ENSMUSG00000111674.1	Gm48728	ENSMUSG00000111674.1	ENSMUST00000213841.1	lincRNA	chr10:8951949-8967244
chr10	9071397	9071509	+	L1MA8	LINE	L1	chr10	9071474	9071476	-	ENSMUST00000216441.1,ENSMUSG00000111077.1	Gm48743	ENSMUSG00000111077.1	ENSMUST00000216441.1	TEC	chr10:9069419-9071475
chr10	9224701	9225633	-	L1_Mus1	LINE	L1	chr10	9224750	9224752	-	ENSMUST00000218588.1,ENSMUSG00000112543.1	Gm48744	ENSMUSG00000112543.1	ENSMUST00000218588.1	TEC	chr10:9223971-9224751
chr10	9566128	9566569	+	MTC	LTR	ERVL-MaLR	chr10	9566375	9566377	+	ENSMUST00000218493.1,ENSMUSG00000112700.1	Gm48757	ENSMUSG00000112700.1	ENSMUST00000218493.1	lincRNA	chr10:9566376-9567605
chr10	9684340	9684737	-	MTA_Mm	LTR	ERVL-MaLR	chr10	9684721	9684723	+	ENSMUST00000219888.1,ENSMUSG00000111901.1	Gm6150	ENSMUSG00000111901.1	ENSMUST00000219888.1	transcribed_processed_pseudogene	chr10:9684722-9691906
chr10	10040228	10040920	-	L1Md_F2	LINE	L1	chr10	10040919	10040921	+	ENSMUST00000219625.1,ENSMUSG00000112059.1	Gm48282	ENSMUSG00000112059.1	ENSMUST00000219625.1	processed_pseudogene	chr10:10040920-10041426
chr10	10078975	10085178	-	L1Md_T	LINE	L1	chr10	10083942	10083944	+	ENSMUST00000219020.1,ENSMUSG00000112074.1	Gm48278	ENSMUSG00000112074.1	ENSMUST00000219020.1	lincRNA	chr10:10083943-10092295
chr10	10100834	10100964	+	B1_Mus1	SINE	Alu	chr10	10100952	10100954	+	ENSMUST00000083942.1,ENSMUSG00000065876.1	Gm25682	ENSMUSG00000065876.1	ENSMUST00000083942.1	snRNA	chr10:10100953-10101116
chr10	10131019	10131288	-	MTD	LTR	ERVL-MaLR	chr10	10131271	10131273	+	ENSMUST00000218822.1,ENSMUSG00000112589.1	Gm48280	ENSMUSG00000112589.1	ENSMUST00000218822.1	processed_pseudogene	chr10:10131272-10131640
chr10	10234991	10235293	+	ORR1F	LTR	ERVL-MaLR	chr10	10234990	10234992	+	ENSMUST00000207048.1,ENSMUSG00000109160.1	4930598N05Rik	ENSMUSG00000109160.1	ENSMUST00000207048.1	processed_transcript	chr10:10234991-10258038
chr10	10234991	10235293	+	ORR1F	LTR	ERVL-MaLR	chr10	10234993	10234995	+	ENSMUST00000207631.1,ENSMUSG00000109160.1	4930598N05Rik	ENSMUSG00000109160.1	ENSMUST00000207631.1	processed_transcript	chr10:10234994-10254576
chr10	10234991	10235293	+	ORR1F	LTR	ERVL-MaLR	chr10	10234993	10234995	+	ENSMUST00000208693.1,ENSMUSG00000109160.1	4930598N05Rik	ENSMUSG00000109160.1	ENSMUST00000208693.1	processed_transcript	chr10:10234994-10258699
chr10	10234991	10235293	+	ORR1F	LTR	ERVL-MaLR	chr10	10235000	10235002	+	ENSMUST00000207288.1,ENSMUSG00000109160.1	4930598N05Rik	ENSMUSG00000109160.1	ENSMUST00000207288.1	processed_transcript	chr10:10235001-10258699
chr10	10235450	10235651	+	MIR	SINE	MIR	chr10	10235460	10235462	+	ENSMUST00000208935.1,ENSMUSG00000109160.1	4930598N05Rik	ENSMUSG00000109160.1	ENSMUST00000208935.1	processed_transcript	chr10:10235461-10255476
chr10	10296894	10297301	+	MTC	LTR	ERVL-MaLR	chr10	10296928	10296930	-	ENSMUST00000218424.1,ENSMUSG00000112573.1	Gm48324	ENSMUSG00000112573.1	ENSMUST00000218424.1	lincRNA	chr10:10270402-10296929
chr10	11580071	11585273	+	L1Md_T	LINE	L1	chr10	11580085	11580087	+	ENSMUST00000218979.1,ENSMUSG00000112151.1	Gm48680	ENSMUSG00000112151.1	ENSMUST00000218979.1	lincRNA	chr10:11580086-11587244
chr10	11940963	11940992	+	(TG)n	Simple_repeat	Simple_repeat	chr10	11940972	11940974	+	ENSMUST00000116869.1,ENSMUSG00000080519.1	Gm22194	ENSMUSG00000080519.1	ENSMUST00000116869.1	miRNA	chr10:11940973-11941067
chr10	12009576	12009968	-	MTA_Mm	LTR	ERVL-MaLR	chr10	12009770	12009772	-	ENSMUST00000218793.1,ENSMUSG00000112747.1	Gm48721	ENSMUSG00000112747.1	ENSMUST00000218793.1	lincRNA	chr10:12002790-12009771
chr10	12031397	12031706	+	RLTR51A_Mm	LTR	ERVK?	chr10	12031439	12031441	-	ENSMUST00000220015.1,ENSMUSG00000112775.1	Gm48722	ENSMUSG00000112775.1	ENSMUST00000220015.1	lincRNA	chr10:12020860-12031440
chr10	12363409	12363581	+	U1	snRNA	snRNA	chr10	12363409	12363411	+	ENSMUST00000083162.1,ENSMUSG00000065096.1	Gm23680	ENSMUSG00000065096.1	ENSMUST00000083162.1	snRNA	chr10:12363410-12363573
chr10	12368621	12368829	+	U17	snRNA	snRNA	chr10	12368622	12368624	+	ENSMUST00000083247.1,ENSMUSG00000065181.1	Gm25139	ENSMUSG00000065181.1	ENSMUST00000083247.1	snoRNA	chr10:12368623-12368832
chr10	12688855	12689027	+	(CCA)n	Simple_repeat	Simple_repeat	chr10	12688861	12688863	-	ENSMUST00000219724.1,ENSMUSG00000019820.11	Utrn	ENSMUSG00000019820.11	ENSMUST00000219724.1	protein_coding	chr10:12666423-12688862
chr10	12793916	12793974	-	U6	snRNA	snRNA	chr10	12793973	12793975	-	ENSMUST00000157891.1,ENSMUSG00000088516.1	Gm23044	ENSMUSG00000088516.1	ENSMUST00000157891.1	snRNA	chr10:12793875-12793974
chr10	13005333	13005373	+	AT_rich	Low_complexity	Low_complexity	chr10	13005342	13005344	+	ENSMUST00000105139.4,ENSMUSG00000078348.4	Sf3b5	ENSMUSG00000078348.4	ENSMUST00000105139.4	protein_coding	chr10:13005343-13009183
chr10	13050949	13052046	+	Lx8b	LINE	L1	chr10	13051384	13051386	-	ENSMUST00000219965.1,ENSMUSG00000112498.1	Gm47691	ENSMUSG00000112498.1	ENSMUST00000219965.1	lincRNA	chr10:13043097-13051385
chr10	13626939	13627489	-	FordPrefect	DNA	hAT-Tip100	chr10	13627197	13627199	+	ENSMUST00000219684.1,ENSMUSG00000112055.1	Gm48773	ENSMUSG00000112055.1	ENSMUST00000219684.1	lincRNA	chr10:13627198-13635107
chr10	13888536	13888643	-	U6	snRNA	snRNA	chr10	13888642	13888644	-	ENSMUST00000179670.1,ENSMUSG00000096790.1	Gm22995	ENSMUSG00000096790.1	ENSMUST00000179670.1	snRNA	chr10:13888537-13888643
chr10	13928790	13929086	-	ERVL-E-int	LTR	ERVL	chr10	13928963	13928965	-	ENSMUST00000220438.1,ENSMUSG00000112494.1	4930444K16Rik	ENSMUSG00000112494.1	ENSMUST00000220438.1	TEC	chr10:13927198-13928964
chr10	14007357	14007438	+	MIRc	SINE	MIR	chr10	14007404	14007406	-	ENSMUST00000181888.1,ENSMUSG00000097300.1	Gm26835	ENSMUSG00000097300.1	ENSMUST00000181888.1	lincRNA	chr10:13967024-14007405
chr10	14296839	14296939	+	(AGGGGG)n	Simple_repeat	Simple_repeat	chr10	14296920	14296922	+	ENSMUST00000218016.1,ENSMUSG00000112679.1	Gm40603	ENSMUSG00000112679.1	ENSMUST00000218016.1	lincRNA	chr10:14296921-14324450
chr10	14327346	14327428	+	(CAGA)n	Simple_repeat	Simple_repeat	chr10	14327410	14327412	+	ENSMUST00000218527.1,ENSMUSG00000112225.1	Gm48854	ENSMUSG00000112225.1	ENSMUST00000218527.1	lincRNA	chr10:14327411-14336615
chr10	14664000	14664392	+	MTA_Mm	LTR	ERVL-MaLR	chr10	14664219	14664221	+	ENSMUST00000124976.1,ENSMUSG00000085572.1	Gm16234	ENSMUSG00000085572.1	ENSMUST00000124976.1	antisense	chr10:14664220-14668318
chr10	14760711	14760757	+	(TAAA)n	Simple_repeat	Simple_repeat	chr10	14760719	14760721	-	ENSMUST00000181479.1,ENSMUSG00000096963.1	B230364G03Rik	ENSMUSG00000096963.1	ENSMUST00000181479.1	antisense	chr10:14758635-14760720
chr10	14771901	14772018	-	MIR	SINE	MIR	chr10	14771939	14771941	+	ENSMUST00000220206.1,ENSMUSG00000112113.1	Gm47698	ENSMUSG00000112113.1	ENSMUST00000220206.1	lincRNA	chr10:14771940-14774519
chr10	15595039	15601383	-	L1Md_A	LINE	L1	chr10	15600226	15600228	+	ENSMUST00000219416.1,ENSMUSG00000112089.1	Gm47712	ENSMUSG00000112089.1	ENSMUST00000219416.1	lincRNA	chr10:15600227-15780010
chr10	15791513	15791921	+	RLTR9E	LTR	ERVK	chr10	15791776	15791778	+	ENSMUST00000218833.1,ENSMUSG00000112227.1	C330004P14Rik	ENSMUSG00000112227.1	ENSMUST00000218833.1	lincRNA	chr10:15791777-15807065
chr10	16977068	16977643	-	MERVL_2A-int	LTR	ERVL	chr10	16977147	16977149	-	ENSMUST00000209129.1,ENSMUSG00000101969.2	Gm20125	ENSMUSG00000101969.2	ENSMUST00000209129.1	processed_transcript	chr10:16951293-16977148
chr10	17086050	17086410	+	L1MA6	LINE	L1	chr10	17086292	17086294	-	ENSMUST00000208596.1,ENSMUSG00000101969.2	Gm20125	ENSMUSG00000101969.2	ENSMUST00000208596.1	processed_transcript	chr10:16952950-17086293
chr10	17095617	17096014	+	L1M2	LINE	L1	chr10	17095781	17095783	-	ENSMUST00000185722.1,ENSMUSG00000101969.2	Gm20125	ENSMUSG00000101969.2	ENSMUST00000185722.1	processed_transcript	chr10:16951294-17095782
chr10	17095617	17096014	+	L1M2	LINE	L1	chr10	17095656	17095658	-	ENSMUST00000208005.1,ENSMUSG00000101969.2	Gm20125	ENSMUSG00000101969.2	ENSMUST00000208005.1	processed_transcript	chr10:16952953-17095657
chr10	17095617	17096014	+	L1M2	LINE	L1	chr10	17095806	17095808	-	ENSMUST00000208870.1,ENSMUSG00000101969.2	Gm20125	ENSMUSG00000101969.2	ENSMUST00000208870.1	processed_transcript	chr10:16981304-17095807
chr10	17116804	17116900	+	U6	snRNA	snRNA	chr10	17116803	17116805	+	ENSMUST00000157811.1,ENSMUSG00000088436.1	Gm25382	ENSMUSG00000088436.1	ENSMUST00000157811.1	snRNA	chr10:17116804-17116900
chr10	17318562	17324233	-	MMERGLN-int	LTR	ERV1	chr10	17323227	17323229	-	ENSMUST00000217920.1,ENSMUSG00000112478.1	Gm47761	ENSMUSG00000112478.1	ENSMUST00000217920.1	lincRNA	chr10:17318085-17323228
chr10	17318562	17324233	-	MMERGLN-int	LTR	ERV1	chr10	17321610	17321612	-	ENSMUST00000219259.1,ENSMUSG00000112478.1	Gm47761	ENSMUSG00000112478.1	ENSMUST00000219259.1	lincRNA	chr10:17318836-17321611
chr10	17526858	17526957	+	L2b	LINE	L2	chr10	17526913	17526915	-	ENSMUST00000220318.1,ENSMUSG00000111927.1	Gm47770	ENSMUSG00000111927.1	ENSMUST00000220318.1	lincRNA	chr10:17522613-17526914
chr10	17795320	17795483	-	MLT1D	LTR	ERVL-MaLR	chr10	17795327	17795329	-	ENSMUST00000181428.1,ENSMUSG00000093672.2	Gm20655	ENSMUSG00000093672.2	ENSMUST00000181428.1	antisense	chr10:17790522-17795328
chr10	17796230	17796286	+	(TG)n	Simple_repeat	Simple_repeat	chr10	17796255	17796257	+	ENSMUST00000037964.6,ENSMUSG00000039891.6	Txlnb	ENSMUSG00000039891.6	ENSMUST00000037964.6	protein_coding	chr10:17796256-17845665
chr10	17817312	17817382	+	RLTR12G	LTR	ERVK	chr10	17817378	17817380	+	ENSMUST00000175829.1,ENSMUSG00000093537.1	Gm7584	ENSMUSG00000093537.1	ENSMUST00000175829.1	processed_pseudogene	chr10:17817379-17818318
chr10	18055882	18055954	+	GC_rich	Low_complexity	Low_complexity	chr10	18055905	18055907	+	ENSMUST00000155284.7,ENSMUSG00000019854.17	Reps1	ENSMUSG00000019854.17	ENSMUST00000155284.7	protein_coding	chr10:18055906-18125144
chr10	18055882	18055954	+	GC_rich	Low_complexity	Low_complexity	chr10	18055939	18055941	+	ENSMUST00000126390.7,ENSMUSG00000019854.17	Reps1	ENSMUSG00000019854.17	ENSMUST00000126390.7	protein_coding	chr10:18055940-18125132
chr10	18055882	18055954	+	GC_rich	Low_complexity	Low_complexity	chr10	18055939	18055941	+	ENSMUST00000164556.7,ENSMUSG00000019854.17	Reps1	ENSMUSG00000019854.17	ENSMUST00000164556.7	protein_coding	chr10:18055940-18125155
chr10	18091388	18091476	-	PB1D7	SINE	Alu	chr10	18091467	18091469	+	ENSMUST00000128711.1,ENSMUSG00000019854.17	Reps1	ENSMUSG00000019854.17	ENSMUST00000128711.1	protein_coding	chr10:18091468-18105026
chr10	18227363	18227727	-	MTD	LTR	ERVL-MaLR	chr10	18227472	18227474	-	ENSMUST00000174592.7,ENSMUSG00000059554.12	Ccdc28a	ENSMUSG00000059554.12	ENSMUST00000174592.7	protein_coding	chr10:18213682-18227473
chr10	19290786	19291180	+	MTA_Mm	LTR	ERVL-MaLR	chr10	19290988	19290990	+	ENSMUST00000213234.1,ENSMUSG00000110917.1	Gm33056	ENSMUSG00000110917.1	ENSMUST00000213234.1	lincRNA	chr10:19290989-19325817
chr10	19644092	19644942	-	RMER13A	LTR	ERVK	chr10	19644749	19644751	+	ENSMUST00000216922.1,ENSMUSG00000042940.8	9230106D20Rik	ENSMUSG00000042940.8	ENSMUST00000216922.1	lincRNA	chr10:19644750-19660801
chr10	19644092	19644942	-	RMER13A	LTR	ERVK	chr10	19644749	19644751	+	ENSMUST00000052806.7,ENSMUSG00000042940.8	9230106D20Rik	ENSMUSG00000042940.8	ENSMUST00000052806.7	lincRNA	chr10:19644750-19660801
chr10	19782853	19782960	+	U6	snRNA	snRNA	chr10	19782853	19782855	+	ENSMUST00000177746.1,ENSMUSG00000094977.1	Gm25256	ENSMUSG00000094977.1	ENSMUST00000177746.1	snRNA	chr10:19782854-19782960
chr10	19934409	19934475	+	GC_rich	Low_complexity	Low_complexity	chr10	19934471	19934473	+	ENSMUST00000095806.9,ENSMUSG00000071369.11	Map3k5	ENSMUSG00000071369.11	ENSMUST00000095806.9	protein_coding	chr10:19934472-20142753
chr10	19950850	19951248	+	MTB_Mm	LTR	ERVL-MaLR	chr10	19951054	19951056	+	ENSMUST00000152533.1,ENSMUSG00000071369.11	Map3k5	ENSMUSG00000071369.11	ENSMUST00000152533.1	protein_coding	chr10:19951055-20023699
chr10	20201832	20202103	+	L1MA9	LINE	L1	chr10	20201837	20201839	-	ENSMUST00000214323.1,ENSMUSG00000110754.1	4930405J17Rik	ENSMUSG00000110754.1	ENSMUST00000214323.1	antisense	chr10:20199240-20201838
chr10	20315936	20315956	+	(TTTTA)n	Simple_repeat	Simple_repeat	chr10	20315953	20315955	+	ENSMUST00000215262.1,ENSMUSG00000037608.16	Bclaf1	ENSMUSG00000037608.16	ENSMUST00000215262.1	protein_coding	chr10:20315954-20319941
chr10	20446701	20447069	+	L1MC4	LINE	L1	chr10	20446890	20446892	-	ENSMUST00000217240.1,ENSMUSG00000019990.15	Pde7b	ENSMUSG00000019990.15	ENSMUST00000217240.1	protein_coding	chr10:20441528-20446891
chr10	20755913	20756308	+	MTA_Mm	LTR	ERVL-MaLR	chr10	20756116	20756118	+	ENSMUST00000213510.1,ENSMUSG00000111091.1	Gm48651	ENSMUSG00000111091.1	ENSMUST00000213510.1	lincRNA	chr10:20756117-20831303
chr10	21160851	21160917	+	GA-rich	Low_complexity	Low_complexity	chr10	21160904	21160906	-	ENSMUST00000188495.7,ENSMUSG00000019982.15	Myb	ENSMUSG00000019982.15	ENSMUST00000188495.7	protein_coding	chr10:21124935-21160905
chr10	21186857	21187033	-	MER102b	DNA	hAT-Charlie	chr10	21186946	21186948	+	ENSMUST00000216598.1,ENSMUSG00000111005.1	Gm33619	ENSMUSG00000111005.1	ENSMUST00000216598.1	lincRNA	chr10:21186947-21188618
chr10	21367385	21367436	+	(CA)n	Simple_repeat	Simple_repeat	chr10	21367400	21367402	+	ENSMUST00000220392.1,ENSMUSG00000019977.16	Hbs1l	ENSMUSG00000019977.16	ENSMUST00000220392.1	protein_coding	chr10:21367401-21368543
chr10	21419168	21419432	+	MTEa	LTR	ERVL-MaLR	chr10	21419357	21419359	+	ENSMUST00000188024.1,ENSMUSG00000037535.5	1700021A07Rik	ENSMUSG00000037535.5	ENSMUST00000188024.1	lincRNA	chr10:21419358-21426565
chr10	21419429	21419594	+	MTEa	LTR	ERVL-MaLR	chr10	21419476	21419478	+	ENSMUST00000187763.1,ENSMUSG00000037535.5	1700021A07Rik	ENSMUSG00000037535.5	ENSMUST00000187763.1	lincRNA	chr10:21419477-21425746
chr10	22074038	22074364	+	RLTR17	LTR	ERVK	chr10	22074236	22074238	+	ENSMUST00000180720.1,ENSMUSG00000097739.1	Gm2539	ENSMUSG00000097739.1	ENSMUST00000180720.1	transcribed_unprocessed_pseudogene	chr10:22074237-22102259
chr10	22089530	22089609	+	RLTRETN_Mm	LTR	ERVK	chr10	22089596	22089598	+	ENSMUST00000180781.1,ENSMUSG00000097739.1	Gm2539	ENSMUSG00000097739.1	ENSMUST00000180781.1	transcribed_unprocessed_pseudogene	chr10:22089597-22100644
chr10	23166864	23166971	-	U6	snRNA	snRNA	chr10	23166970	23166972	-	ENSMUST00000178790.1,ENSMUSG00000094033.1	Gm24655	ENSMUSG00000094033.1	ENSMUST00000178790.1	snRNA	chr10:23166865-23166971
chr10	23621733	23622435	+	Lx7	LINE	L1	chr10	23622147	23622149	-	ENSMUST00000219658.1,ENSMUSG00000112868.1	4930520K02Rik	ENSMUSG00000112868.1	ENSMUST00000219658.1	lincRNA	chr10:23611263-23622148
chr10	23621733	23622435	+	Lx7	LINE	L1	chr10	23622147	23622149	-	ENSMUST00000219522.1,ENSMUSG00000112868.1	4930520K02Rik	ENSMUSG00000112868.1	ENSMUST00000219522.1	lincRNA	chr10:23613522-23622148
chr10	23824459	23824554	+	(GAA)n	Simple_repeat	Simple_repeat	chr10	23824486	23824488	+	ENSMUST00000143931.1,ENSMUSG00000037455.16	Slc18b1	ENSMUSG00000037455.16	ENSMUST00000143931.1	protein_coding	chr10:23824487-23827088
chr10	24223491	24223535	+	GC_rich	Low_complexity	Low_complexity	chr10	24223516	24223518	+	ENSMUST00000095784.2,ENSMUSG00000020000.7	Moxd1	ENSMUSG00000020000.7	ENSMUST00000095784.2	protein_coding	chr10:24223517-24302790
chr10	24514509	24515450	+	MMERVK10C-int	LTR	ERVK	chr10	24514510	24514512	-	ENSMUST00000120865.1,ENSMUSG00000083196.1	Gm15272	ENSMUSG00000083196.1	ENSMUST00000120865.1	processed_pseudogene	chr10:24514279-24514511
chr10	24550312	24550368	+	(TG)n	Simple_repeat	Simple_repeat	chr10	24550339	24550341	-	ENSMUST00000146208.1,ENSMUSG00000087400.8	Gm15270	ENSMUSG00000087400.8	ENSMUST00000146208.1	processed_transcript	chr10:24549441-24550340
chr10	24842298	24843122	+	MTD-int	LTR	ERVL-MaLR	chr10	24842822	24842824	-	ENSMUST00000219342.1,ENSMUSG00000019989.8	Enpp3	ENSMUSG00000019989.8	ENSMUST00000219342.1	protein_coding	chr10:24808151-24842823
chr10	24842298	24843122	+	MTD-int	LTR	ERVL-MaLR	chr10	24842739	24842741	-	ENSMUST00000219968.1,ENSMUSG00000019989.8	Enpp3	ENSMUSG00000019989.8	ENSMUST00000219968.1	protein_coding	chr10:24817867-24842740
chr10	24893979	24894086	+	U6	snRNA	snRNA	chr10	24893979	24893981	+	ENSMUST00000179967.1,ENSMUSG00000096809.1	Gm23410	ENSMUSG00000096809.1	ENSMUST00000179967.1	snRNA	chr10:24893980-24894086
chr10	25298313	25298892	+	Lx5c	LINE	L1	chr10	25298608	25298610	+	ENSMUST00000218840.1,ENSMUSG00000112352.1	Gm40617	ENSMUSG00000112352.1	ENSMUST00000218840.1	antisense	chr10:25298609-25306432
chr10	25623592	25628918	-	MERVL-int	LTR	ERVL	chr10	25628873	25628875	-	ENSMUST00000219989.1,ENSMUSG00000112101.1	Gm47924	ENSMUSG00000112101.1	ENSMUST00000219989.1	processed_pseudogene	chr10:25627573-25628874
chr10	25837419	25837455	+	RLTR10B	LTR	ERVK	chr10	25837436	25837438	-	ENSMUST00000218300.1,ENSMUSG00000112444.1	4930401C15Rik	ENSMUSG00000112444.1	ENSMUST00000218300.1	lincRNA	chr10:25779314-25837437
chr10	25896040	25903595	+	MMERGLN-int	LTR	ERV1	chr10	25899278	25899280	+	ENSMUST00000219283.1,ENSMUSG00000112324.1	Gm47939	ENSMUSG00000112324.1	ENSMUST00000219283.1	lincRNA	chr10:25899279-25903916
chr10	26017524	26017926	+	RMER17C	LTR	ERVK	chr10	26017542	26017544	-	ENSMUST00000219651.1,ENSMUSG00000049420.9	Tmem200a	ENSMUSG00000049420.9	ENSMUST00000219651.1	protein_coding	chr10:25993658-26017543
chr10	26106082	26110953	+	L1_Mus1	LINE	L1	chr10	26107788	26107790	+	ENSMUST00000218296.1,ENSMUSG00000112808.1	Gm4739	ENSMUSG00000112808.1	ENSMUST00000218296.1	processed_pseudogene	chr10:26107789-26108421
chr10	26356731	26356876	+	B1_Mus1	SINE	Alu	chr10	26356856	26356858	-	ENSMUST00000183340.1,ENSMUSG00000098898.1	Gm27754	ENSMUSG00000098898.1	ENSMUST00000183340.1	miRNA	chr10:26356732-26356857
chr10	26863174	26863402	-	B4A	SINE	B4	chr10	26863341	26863343	+	ENSMUST00000142284.1,ENSMUSG00000039031.16	Arhgap18	ENSMUSG00000039031.16	ENSMUST00000142284.1	protein_coding	chr10:26863342-26918458
chr10	28737085	28737483	-	L1MCa	LINE	L1	chr10	28737424	28737426	+	ENSMUST00000219119.1,ENSMUSG00000049109.15	Themis	ENSMUSG00000049109.15	ENSMUST00000219119.1	protein_coding	chr10:28737425-28740885
chr10	28922301	28922732	-	RLTR10C	LTR	ERVK	chr10	28922394	28922396	-	ENSMUST00000159347.1,ENSMUSG00000090126.1	4930519F09Rik	ENSMUSG00000090126.1	ENSMUST00000159347.1	transcribed_processed_pseudogene	chr10:28880921-28922395
chr10	29349584	29349691	+	U6	snRNA	snRNA	chr10	29349584	29349586	+	ENSMUST00000178368.1,ENSMUSG00000096841.1	Gm25596	ENSMUSG00000096841.1	ENSMUST00000178368.1	snRNA	chr10:29349585-29349691
chr10	29393594	29395052	+	Lx3_Mus	LINE	L1	chr10	29395035	29395037	+	ENSMUST00000157632.1,ENSMUSG00000088257.1	Gm24286	ENSMUSG00000088257.1	ENSMUST00000157632.1	snoRNA	chr10:29395036-29395163
chr10	29699373	29699464	-	Lx6	LINE	L1	chr10	29699379	29699381	-	ENSMUST00000092620.5,ENSMUSG00000069682.6	Gm10275	ENSMUSG00000069682.6	ENSMUST00000092620.5	transcribed_processed_pseudogene	chr10:29698746-29699380
chr10	30004115	30004583	+	L1_Mur2	LINE	L1	chr10	30004377	30004379	-	ENSMUST00000213166.1,ENSMUSG00000111195.1	Gm48215	ENSMUSG00000111195.1	ENSMUST00000213166.1	lincRNA	chr10:29984178-30004378
chr10	30493941	30494048	+	U6	snRNA	snRNA	chr10	30493941	30493943	+	ENSMUST00000179244.1,ENSMUSG00000094452.1	Gm22623	ENSMUSG00000094452.1	ENSMUST00000179244.1	snRNA	chr10:30493942-30494048
chr10	30532024	30532297	+	B4	SINE	B4	chr10	30532029	30532031	-	ENSMUST00000214092.1,ENSMUSG00000111211.1	Gm48233	ENSMUSG00000111211.1	ENSMUST00000214092.1	TEC	chr10:30530914-30532030
chr10	30605899	30607606	+	L1_Mus2	LINE	L1	chr10	30606633	30606635	-	ENSMUST00000214634.1,ENSMUSG00000111080.1	Gm20300	ENSMUSG00000111080.1	ENSMUST00000214634.1	lincRNA	chr10:30603195-30606634
chr10	30614498	30614695	-	L1Md_F3	LINE	L1	chr10	30614551	30614553	-	ENSMUST00000217266.1,ENSMUSG00000019791.12	Hint3	ENSMUSG00000019791.12	ENSMUST00000217266.1	protein_coding	chr10:30612108-30614552
chr10	30629455	30629788	-	ORR1A2	LTR	ERVL-MaLR	chr10	30629631	30629633	-	ENSMUST00000216617.1,ENSMUSG00000019791.12	Hint3	ENSMUSG00000019791.12	ENSMUST00000216617.1	protein_coding	chr10:30608231-30629632
chr10	30673130	30673227	-	5S	rRNA	rRNA	chr10	30673226	30673228	-	ENSMUST00000157975.1,ENSMUSG00000088600.1	Gm24189	ENSMUSG00000088600.1	ENSMUST00000157975.1	rRNA	chr10:30673134-30673227
chr10	30743898	30743967	-	ID4_	SINE	ID	chr10	30743961	30743963	-	ENSMUST00000215097.1,ENSMUSG00000110894.1	Gm48335	ENSMUSG00000110894.1	ENSMUST00000215097.1	TEC	chr10:30740152-30743962
chr10	30769315	30770337	+	L1MD2	LINE	L1	chr10	30769574	30769576	-	ENSMUST00000214553.1,ENSMUSG00000111442.1	Gm48334	ENSMUSG00000111442.1	ENSMUST00000214553.1	TEC	chr10:30768799-30769575
chr10	30841913	30842078	-	MER129	LTR?	LTR?	chr10	30842014	30842016	-	ENSMUST00000217504.1,ENSMUSG00000019789.9	Hey2	ENSMUSG00000019789.9	ENSMUST00000217504.1	protein_coding	chr10:30839810-30842015
chr10	30877788	30881588	-	L1_Mus3	LINE	L1	chr10	30880516	30880518	+	ENSMUST00000215584.1,ENSMUSG00000110918.1	Gm48862	ENSMUSG00000110918.1	ENSMUST00000215584.1	processed_pseudogene	chr10:30880517-30880850
chr10	30942378	30942485	-	U6	snRNA	snRNA	chr10	30942484	30942486	-	ENSMUST00000178825.1,ENSMUSG00000094008.1	Gm24168	ENSMUSG00000094008.1	ENSMUST00000178825.1	snRNA	chr10:30942379-30942485
chr10	31163525	31163632	-	U6	snRNA	snRNA	chr10	31163631	31163633	-	ENSMUST00000083013.1,ENSMUSG00000095305.1	Gm23790	ENSMUSG00000095305.1	ENSMUST00000083013.1	snRNA	chr10:31163526-31163632
chr10	31246167	31248134	+	L1_Mur3	LINE	L1	chr10	31248022	31248024	+	ENSMUST00000216161.1,ENSMUSG00000039684.9	Gm5422	ENSMUSG00000039684.9	ENSMUST00000216161.1	transcribed_processed_pseudogene	chr10:31248023-31251043
chr10	31317167	31317281	-	5S	rRNA	rRNA	chr10	31317280	31317282	-	ENSMUST00000122700.1,ENSMUSG00000084649.1	n-R5s76	ENSMUSG00000084649.1	ENSMUST00000122700.1	rRNA	chr10:31317169-31317281
chr10	31398125	31399645	+	RLTR22_Mur	LTR	ERVK	chr10	31398922	31398924	+	ENSMUST00000213319.1,ENSMUSG00000111256.1	Gm48094	ENSMUSG00000111256.1	ENSMUST00000213319.1	antisense	chr10:31398923-31414401
chr10	31452001	31452420	-	L1Md_A	LINE	L1	chr10	31452081	31452083	-	ENSMUST00000217582.1,ENSMUSG00000111865.1	Gm47687	ENSMUSG00000111865.1	ENSMUST00000217582.1	TEC	chr10:31448257-31452082
chr10	31609184	31609257	+	GC_rich	Low_complexity	Low_complexity	chr10	31609183	31609185	-	ENSMUST00000081989.7,ENSMUSG00000063760.9	Rnf217	ENSMUSG00000063760.9	ENSMUST00000081989.7	protein_coding	chr10:31493193-31609184
chr10	32266283	32266875	-	RLTR26	LTR	ERVK	chr10	32266538	32266540	-	ENSMUST00000218326.1,ENSMUSG00000112367.1	A230081H15Rik	ENSMUSG00000112367.1	ENSMUST00000218326.1	TEC	chr10:32263611-32266539
chr10	32409693	32410973	+	L1_Mus2	LINE	L1	chr10	32410334	32410336	-	ENSMUST00000092603.4,ENSMUSG00000069670.8	Nkain2	ENSMUSG00000069670.8	ENSMUST00000092603.4	protein_coding	chr10:32329765-32410335
chr10	33171614	33171710	+	RLTR17B_Mm	LTR	ERVK	chr10	33171709	33171711	+	ENSMUST00000218354.1,ENSMUSG00000112897.1	Gm47831	ENSMUSG00000112897.1	ENSMUST00000218354.1	TEC	chr10:33171710-33172486
chr10	33323328	33329136	-	L1Md_F2	LINE	L1	chr10	33327774	33327776	-	ENSMUST00000220106.1,ENSMUSG00000112855.1	Gm47842	ENSMUSG00000112855.1	ENSMUST00000220106.1	processed_pseudogene	chr10:33324012-33327775
chr10	33436811	33436918	-	MLT1C-int	LTR	ERVL-MaLR	chr10	33436852	33436854	-	ENSMUST00000219520.1,ENSMUSG00000111958.1	Gm47844	ENSMUSG00000111958.1	ENSMUST00000219520.1	processed_pseudogene	chr10:33435482-33436853
chr10	33856056	33860295	-	L1VL2	LINE	L1	chr10	33857720	33857722	+	ENSMUST00000218204.1,ENSMUSG00000069668.4	Sult3a1	ENSMUSG00000069668.4	ENSMUST00000218204.1	protein_coding	chr10:33857721-33879532
chr10	33933194	33933340	+	B1_Mus1	SINE	Alu	chr10	33933339	33933341	-	ENSMUST00000219935.1,ENSMUSG00000039531.8	Zup1	ENSMUSG00000039531.8	ENSMUST00000219935.1	protein_coding	chr10:33929965-33933340
chr10	33972141	33972308	+	L1MC4	LINE	L1	chr10	33972284	33972286	+	ENSMUST00000219391.1,ENSMUSG00000111993.1	Gm48018	ENSMUSG00000111993.1	ENSMUST00000219391.1	transcribed_unprocessed_pseudogene	chr10:33972285-33976689
chr10	34096494	34096566	+	MamGypLTR3a	LTR	Gypsy	chr10	34096518	34096520	-	ENSMUST00000069125.7,ENSMUSG00000049872.8	Calhm5	ENSMUSG00000049872.8	ENSMUST00000069125.7	protein_coding	chr10:34087815-34096519
chr10	34179747	34179983	+	MTEa	LTR	ERVL-MaLR	chr10	34179927	34179929	-	ENSMUST00000213617.1,ENSMUSG00000111361.1	Gm47445	ENSMUSG00000111361.1	ENSMUST00000213617.1	TEC	chr10:34178235-34179928
chr10	34233322	34233666	-	ORR1A4	LTR	ERVL-MaLR	chr10	34233530	34233532	-	ENSMUST00000216701.1,ENSMUSG00000111149.1	Gm26564	ENSMUSG00000111149.1	ENSMUST00000216701.1	lincRNA	chr10:34230907-34233531
chr10	34293530	34293653	+	B1_Mus2	SINE	Alu	chr10	34293557	34293559	+	ENSMUST00000213462.1,ENSMUSG00000110791.1	Gm47508	ENSMUSG00000110791.1	ENSMUST00000213462.1	TEC	chr10:34293558-34296573
chr10	34418544	34418603	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	34418551	34418553	-	ENSMUST00000047885.13,ENSMUSG00000039480.14	Nt5dc1	ENSMUSG00000039480.14	ENSMUST00000047885.13	protein_coding	chr10:34303609-34418552
chr10	34880882	34881412	+	L1MA8	LINE	L1	chr10	34881407	34881409	+	ENSMUST00000215855.1,ENSMUSG00000111042.1	Gm18252	ENSMUSG00000111042.1	ENSMUST00000215855.1	transcribed_processed_pseudogene	chr10:34881408-34882164
chr10	35485226	35485577	-	RLTR44A	LTR	ERVK	chr10	35485395	35485397	-	ENSMUST00000214107.1,ENSMUSG00000111753.1	1700054O05Rik	ENSMUSG00000111753.1	ENSMUST00000214107.1	lincRNA	chr10:35478827-35485396
chr10	35711892	35712060	-	MT2C_Mm	LTR	ERVL	chr10	35711891	35711893	-	ENSMUST00000080898.3,ENSMUSG00000063953.3	Amd2	ENSMUSG00000063953.3	ENSMUST00000080898.3	protein_coding	chr10:35708675-35711892
chr10	35838456	35838926	+	RMER17C	LTR	ERVK	chr10	35838489	35838491	+	ENSMUST00000213846.1,ENSMUSG00000111550.1	Gm49446	ENSMUSG00000111550.1	ENSMUST00000213846.1	lincRNA	chr10:35838490-35854475
chr10	35859415	35859938	+	L1Md_F2	LINE	L1	chr10	35859449	35859451	-	ENSMUST00000213320.1,ENSMUSG00000110865.1	Gm47046	ENSMUSG00000110865.1	ENSMUST00000213320.1	processed_pseudogene	chr10:35849310-35859450
chr10	36391117	36391829	+	Lx3A	LINE	L1	chr10	36391591	36391593	+	ENSMUST00000214163.1,ENSMUSG00000110731.1	Gm47049	ENSMUSG00000110731.1	ENSMUST00000214163.1	lincRNA	chr10:36391592-36396928
chr10	36613733	36614236	-	LTRIS2	LTR	ERV1	chr10	36614073	36614075	-	ENSMUST00000214665.1,ENSMUSG00000111231.1	Gm47054	ENSMUSG00000111231.1	ENSMUST00000214665.1	TEC	chr10:36611900-36614074
chr10	37263656	37263817	+	(CATTC)n	Simple_repeat	Simple_repeat	chr10	37263747	37263749	-	ENSMUST00000217044.1,ENSMUSG00000110799.1	4930543K20Rik	ENSMUSG00000110799.1	ENSMUST00000217044.1	lincRNA	chr10:37263394-37263748
chr10	37931611	37931991	+	MTA_Mm	LTR	ERVL-MaLR	chr10	37931679	37931681	+	ENSMUST00000175235.1,ENSMUSG00000096080.1	Gm24710	ENSMUSG00000096080.1	ENSMUST00000175235.1	miRNA	chr10:37931680-37931780
chr10	38175543	38176179	+	Lx	LINE	L1	chr10	38175779	38175781	+	ENSMUST00000215643.1,ENSMUSG00000111234.1	4930591E09Rik	ENSMUSG00000111234.1	ENSMUST00000215643.1	lincRNA	chr10:38175780-38181903
chr10	38615374	38615481	-	U6	snRNA	snRNA	chr10	38615480	38615482	-	ENSMUST00000177920.1,ENSMUSG00000094521.1	Gm22911	ENSMUSG00000094521.1	ENSMUST00000177920.1	snRNA	chr10:38615375-38615481
chr10	39613619	39613731	+	PB1D10	SINE	Alu	chr10	39613666	39613668	-	ENSMUST00000142723.7,ENSMUSG00000086915.7	Gm16365	ENSMUSG00000086915.7	ENSMUST00000142723.7	antisense	chr10:39560025-39613667
chr10	39613619	39613731	+	PB1D10	SINE	Alu	chr10	39613670	39613672	-	ENSMUST00000124241.7,ENSMUSG00000086915.7	Gm16365	ENSMUSG00000086915.7	ENSMUST00000124241.7	antisense	chr10:39562380-39613671
chr10	39613619	39613731	+	PB1D10	SINE	Alu	chr10	39613681	39613683	-	ENSMUST00000143877.1,ENSMUSG00000086915.7	Gm16365	ENSMUSG00000086915.7	ENSMUST00000143877.1	antisense	chr10:39595859-39613682
chr10	39650219	39650731	-	MT2B1	LTR	ERVL	chr10	39650554	39650556	+	ENSMUST00000155945.1,ENSMUSG00000019842.6	Traf3ip2	ENSMUSG00000019842.6	ENSMUST00000155945.1	protein_coding	chr10:39650555-39654825
chr10	39727867	39728261	+	MER45B	DNA	hAT-Tip100	chr10	39728180	39728182	-	ENSMUST00000136862.7,ENSMUSG00000087177.7	E130307A14Rik	ENSMUSG00000087177.7	ENSMUST00000136862.7	antisense	chr10:39653897-39728181
chr10	39731996	39732102	+	C-rich	Low_complexity	Low_complexity	chr10	39732006	39732008	-	ENSMUST00000129191.7,ENSMUSG00000087177.7	E130307A14Rik	ENSMUSG00000087177.7	ENSMUST00000129191.7	antisense	chr10:39621412-39732007
chr10	39731996	39732102	+	C-rich	Low_complexity	Low_complexity	chr10	39732005	39732007	-	ENSMUST00000151921.7,ENSMUSG00000087177.7	E130307A14Rik	ENSMUSG00000087177.7	ENSMUST00000151921.7	antisense	chr10:39621414-39732006
chr10	39731996	39732102	+	C-rich	Low_complexity	Low_complexity	chr10	39732000	39732002	-	ENSMUST00000133302.7,ENSMUSG00000087177.7	E130307A14Rik	ENSMUSG00000087177.7	ENSMUST00000133302.7	antisense	chr10:39622698-39732001
chr10	39731996	39732102	+	C-rich	Low_complexity	Low_complexity	chr10	39732005	39732007	-	ENSMUST00000149830.7,ENSMUSG00000087177.7	E130307A14Rik	ENSMUSG00000087177.7	ENSMUST00000149830.7	antisense	chr10:39654465-39732006
chr10	39731996	39732102	+	C-rich	Low_complexity	Low_complexity	chr10	39732005	39732007	-	ENSMUST00000155482.1,ENSMUSG00000087177.7	E130307A14Rik	ENSMUSG00000087177.7	ENSMUST00000155482.1	antisense	chr10:39679016-39732006
chr10	39866973	39867121	+	B1_Mus1	SINE	Alu	chr10	39867108	39867110	+	ENSMUST00000127726.1,ENSMUSG00000019841.15	Rev3l	ENSMUSG00000019841.15	ENSMUST00000127726.1	protein_coding	chr10:39867109-39874488
chr10	39895815	39896931	-	MTC-int	LTR	ERVL-MaLR	chr10	39895820	39895822	-	ENSMUST00000178045.7,ENSMUSG00000096687.7	Mfsd4b4	ENSMUSG00000096687.7	ENSMUST00000178045.7	protein_coding	chr10:39890018-39895821
chr10	40183672	40183696	+	(A)n	Simple_repeat	Simple_repeat	chr10	40183691	40183693	-	ENSMUST00000214034.1,ENSMUSG00000111045.1	Gm47598	ENSMUSG00000111045.1	ENSMUST00000214034.1	lincRNA	chr10:40180657-40183692
chr10	40258466	40258679	+	U3	snRNA	snRNA	chr10	40258466	40258468	+	ENSMUST00000196710.1,ENSMUSG00000106147.1	Rnu3a	ENSMUSG00000106147.1	ENSMUST00000196710.1	snoRNA	chr10:40258467-40258679
chr10	40258466	40258679	+	U3	snRNA	snRNA	chr10	40258466	40258468	+	ENSMUST00000083936.2,ENSMUSG00000065870.2	Rnu3a	ENSMUSG00000065870.2	ENSMUST00000083936.2	snoRNA	chr10:40258467-40258680
chr10	40260866	40260973	+	PB1D10	SINE	Alu	chr10	40260933	40260935	+	ENSMUST00000217206.1,ENSMUSG00000111665.1	A930033M14Rik	ENSMUSG00000111665.1	ENSMUST00000217206.1	lincRNA	chr10:40260934-40261333
chr10	40282052	40282185	-	B1_Mur1	SINE	Alu	chr10	40282052	40282054	-	ENSMUST00000213723.1,ENSMUSG00000111213.1	Gm47867	ENSMUSG00000111213.1	ENSMUST00000213723.1	processed_pseudogene	chr10:40280683-40282053
chr10	40339364	40339688	-	Charlie13a	DNA	hAT-Charlie	chr10	40339563	40339565	+	ENSMUST00000216736.1,ENSMUSG00000038481.13	Cdk19	ENSMUSG00000038481.13	ENSMUST00000216736.1	protein_coding	chr10:40339564-40480868
chr10	40566658	40566766	-	MLTR31F_MM	LTR	ERVK	chr10	40566671	40566673	-	ENSMUST00000214505.1,ENSMUSG00000111108.1	Gm17795	ENSMUSG00000111108.1	ENSMUST00000214505.1	processed_pseudogene	chr10:40565916-40566672
chr10	41387899	41388006	+	U6	snRNA	snRNA	chr10	41387899	41387901	+	ENSMUST00000177631.1,ENSMUSG00000094663.1	Gm25626	ENSMUSG00000094663.1	ENSMUST00000177631.1	snRNA	chr10:41387900-41388006
chr10	41408178	41408285	-	5S	rRNA	rRNA	chr10	41408276	41408278	-	ENSMUST00000183534.1,ENSMUSG00000098818.1	Gm27783	ENSMUSG00000098818.1	ENSMUST00000183534.1	rRNA	chr10:41408173-41408277
chr10	41489597	41489746	+	B3	SINE	B2	chr10	41489678	41489680	-	ENSMUST00000147367.7,ENSMUSG00000019822.12	Smpd2	ENSMUSG00000019822.12	ENSMUST00000147367.7	protein_coding	chr10:41488031-41489679
chr10	41560242	41560992	-	RMER19B	LTR	ERVK	chr10	41560675	41560677	-	ENSMUST00000160002.7,ENSMUSG00000075225.14	Ccdc162	ENSMUSG00000075225.14	ENSMUST00000160002.7	protein_coding	chr10:41548928-41560676
chr10	41575493	41575584	+	B1_Mur1	SINE	Alu	chr10	41575563	41575565	+	ENSMUST00000165647.1,ENSMUSG00000091370.1	5730435O14Rik	ENSMUSG00000091370.1	ENSMUST00000165647.1	processed_transcript	chr10:41575564-41576465
chr10	41587692	41587790	+	B1F1	SINE	Alu	chr10	41587752	41587754	-	ENSMUST00000160751.2,ENSMUSG00000075225.14	Ccdc162	ENSMUSG00000075225.14	ENSMUST00000160751.2	protein_coding	chr10:41580225-41587753
chr10	41670572	41670758	-	B2_Mm2	SINE	B2	chr10	41670738	41670740	+	ENSMUST00000175557.1,ENSMUSG00000093298.1	Mir3473b	ENSMUSG00000093298.1	ENSMUST00000175557.1	miRNA	chr10:41670739-41670793
chr10	41887417	41887441	+	GC_rich	Low_complexity	Low_complexity	chr10	41887438	41887440	+	ENSMUST00000041438.6,ENSMUSG00000038332.13	Sesn1	ENSMUSG00000038332.13	ENSMUST00000041438.6	protein_coding	chr10:41887439-41908424
chr10	41976023	41976187	+	MIR	SINE	MIR	chr10	41976121	41976123	-	ENSMUST00000160367.7,ENSMUSG00000071324.11	Armc2	ENSMUSG00000071324.11	ENSMUST00000160367.7	protein_coding	chr10:41916051-41976122
chr10	42018382	42018414	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	42018381	42018383	-	ENSMUST00000095729.10,ENSMUSG00000071324.11	Armc2	ENSMUSG00000071324.11	ENSMUST00000095729.10	protein_coding	chr10:41915000-42018382
chr10	42018382	42018414	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	42018381	42018383	-	ENSMUST00000161081.1,ENSMUSG00000071324.11	Armc2	ENSMUSG00000071324.11	ENSMUST00000161081.1	protein_coding	chr10:42000349-42018382
chr10	42493536	42493746	-	7SK	RNA	RNA	chr10	42493745	42493747	-	ENSMUST00000157266.1,ENSMUSG00000087891.1	Gm25277	ENSMUSG00000087891.1	ENSMUST00000157266.1	misc_RNA	chr10:42493423-42493746
chr10	42493743	42494069	+	MER31B	LTR	ERV1	chr10	42493745	42493747	-	ENSMUST00000157266.1,ENSMUSG00000087891.1	Gm25277	ENSMUSG00000087891.1	ENSMUST00000157266.1	misc_RNA	chr10:42493423-42493746
chr10	42502261	42502349	+	(CGG)n	Simple_repeat	Simple_repeat	chr10	42502289	42502291	+	ENSMUST00000105499.1,ENSMUSG00000019804.12	Snx3	ENSMUSG00000019804.12	ENSMUST00000105499.1	protein_coding	chr10:42502290-42535381
chr10	42761560	42761658	+	(CGG)n	Simple_repeat	Simple_repeat	chr10	42761614	42761616	+	ENSMUST00000155410.7,ENSMUSG00000019802.13	Sec63	ENSMUSG00000019802.13	ENSMUST00000155410.7	protein_coding	chr10:42761615-42830392
chr10	42864232	42864276	+	(CACG)n	Simple_repeat	Simple_repeat	chr10	42864239	42864241	-	ENSMUST00000217505.1,ENSMUSG00000111293.1	Gm34006	ENSMUSG00000111293.1	ENSMUST00000217505.1	antisense	chr10:42861382-42864240
chr10	42888706	42888818	+	BC1_Mm	scRNA	scRNA	chr10	42888796	42888798	-	ENSMUST00000214070.1,ENSMUSG00000111086.1	Gm48671	ENSMUSG00000111086.1	ENSMUST00000214070.1	lincRNA	chr10:42886705-42888797
chr10	42902290	42902634	+	ORR1A0	LTR	ERVL-MaLR	chr10	42902472	42902474	+	ENSMUST00000125576.1,ENSMUSG00000044770.14	Scml4	ENSMUSG00000044770.14	ENSMUST00000125576.1	protein_coding	chr10:42902473-42935139
chr10	42934186	42934361	+	L1MC3	LINE	L1	chr10	42934337	42934339	+	ENSMUST00000130511.7,ENSMUSG00000044770.14	Scml4	ENSMUSG00000044770.14	ENSMUST00000130511.7	protein_coding	chr10:42934338-42958770
chr10	43412421	43412535	-	B1_Mur2	SINE	Alu	chr10	43412530	43412532	+	ENSMUST00000216518.1,ENSMUSG00000110772.1	Gm47856	ENSMUSG00000110772.1	ENSMUST00000216518.1	TEC	chr10:43412531-43413762
chr10	43593289	43593459	-	MER5B	DNA	hAT-Charlie	chr10	43593396	43593398	+	ENSMUST00000215599.1,ENSMUSG00000075184.3	F930017D23Rik	ENSMUSG00000075184.3	ENSMUST00000215599.1	lincRNA	chr10:43593397-43707283
chr10	43593289	43593459	-	MER5B	DNA	hAT-Charlie	chr10	43593396	43593398	+	ENSMUST00000213342.1,ENSMUSG00000075184.3	F930017D23Rik	ENSMUSG00000075184.3	ENSMUST00000213342.1	lincRNA	chr10:43593397-43709668
chr10	43593289	43593459	-	MER5B	DNA	hAT-Charlie	chr10	43593425	43593427	+	ENSMUST00000216878.1,ENSMUSG00000075184.3	F930017D23Rik	ENSMUSG00000075184.3	ENSMUST00000216878.1	lincRNA	chr10:43593426-43605303
chr10	43593289	43593459	-	MER5B	DNA	hAT-Charlie	chr10	43593425	43593427	+	ENSMUST00000099888.3,ENSMUSG00000075184.3	F930017D23Rik	ENSMUSG00000075184.3	ENSMUST00000099888.3	lincRNA	chr10:43593426-43630916
chr10	43593289	43593459	-	MER5B	DNA	hAT-Charlie	chr10	43593438	43593440	+	ENSMUST00000217420.1,ENSMUSG00000075184.3	F930017D23Rik	ENSMUSG00000075184.3	ENSMUST00000217420.1	lincRNA	chr10:43593439-43604627
chr10	43687184	43687310	-	B4A	SINE	B4	chr10	43687301	43687303	-	ENSMUST00000217559.1,ENSMUSG00000111749.1	Gm47927	ENSMUSG00000111749.1	ENSMUST00000217559.1	lincRNA	chr10:43681001-43687302
chr10	43825809	43826319	+	MLTR31E_MM	LTR	ERVK	chr10	43825891	43825893	+	ENSMUST00000214651.1,ENSMUSG00000111342.1	4933404K13Rik	ENSMUSG00000111342.1	ENSMUST00000214651.1	lincRNA	chr10:43825892-43833392
chr10	43826569	43826844	-	ORR1F	LTR	ERVL-MaLR	chr10	43826579	43826581	+	ENSMUST00000217125.1,ENSMUSG00000111342.1	4933404K13Rik	ENSMUSG00000111342.1	ENSMUST00000217125.1	lincRNA	chr10:43826580-43833301
chr10	43877086	43877540	+	IAPLTR2_Mm	LTR	ERVK	chr10	43877103	43877105	-	ENSMUST00000146937.1,ENSMUSG00000019863.7	Qrsl1	ENSMUSG00000019863.7	ENSMUST00000146937.1	protein_coding	chr10:43874422-43877104
chr10	43947604	43947916	+	MTD	LTR	ERVL-MaLR	chr10	43947895	43947897	+	ENSMUST00000214453.1,ENSMUSG00000019864.14	Rtn4ip1	ENSMUSG00000019864.14	ENSMUST00000214453.1	protein_coding	chr10:43947896-43949316
chr10	44170431	44170530	+	PB1D10	SINE	Alu	chr10	44170446	44170448	+	ENSMUST00000169525.2,ENSMUSG00000091358.2	Speer5-ps1	ENSMUSG00000091358.2	ENSMUST00000169525.2	transcribed_processed_pseudogene	chr10:44170447-44219583
chr10	44216830	44217194	+	MTA_Mm	LTR	ERVL-MaLR	chr10	44217028	44217030	+	ENSMUST00000215938.1,ENSMUSG00000091358.2	Speer5-ps1	ENSMUSG00000091358.2	ENSMUST00000215938.1	transcribed_processed_pseudogene	chr10:44217029-44219582
chr10	44597313	44597378	+	(CA)n	Simple_repeat	Simple_repeat	chr10	44597326	44597328	-	ENSMUST00000158339.1,ENSMUSG00000088964.1	Gm22087	ENSMUSG00000088964.1	ENSMUST00000158339.1	snRNA	chr10:44597240-44597327
chr10	44732353	44732462	+	U6	snRNA	snRNA	chr10	44732352	44732354	+	ENSMUST00000158983.1,ENSMUSG00000089608.1	Gm22503	ENSMUSG00000089608.1	ENSMUST00000158983.1	snRNA	chr10:44732353-44732467
chr10	44738074	44743166	+	L1Md_F2	LINE	L1	chr10	44738899	44738901	-	ENSMUST00000213122.1,ENSMUSG00000111494.1	4930431F10Rik	ENSMUSG00000111494.1	ENSMUST00000213122.1	lincRNA	chr10:44730769-44738900
chr10	44922126	44922194	-	MER45B	DNA	hAT-Tip100	chr10	44922176	44922178	-	ENSMUST00000102327.1,ENSMUSG00000076282.1	Gm24271	ENSMUSG00000076282.1	ENSMUST00000102327.1	miRNA	chr10:44922067-44922177
chr10	45177725	45178270	+	MT2_Mm	LTR	ERVL	chr10	45178097	45178099	+	ENSMUST00000175658.1,ENSMUSG00000019848.14	Popdc3	ENSMUSG00000019848.14	ENSMUST00000175658.1	protein_coding	chr10:45178098-45315114
chr10	45353500	45353625	-	B1_Mus1	SINE	Alu	chr10	45353507	45353509	+	ENSMUST00000213557.1,ENSMUSG00000071317.4	Bves	ENSMUSG00000071317.4	ENSMUST00000213557.1	protein_coding	chr10:45353508-45354834
chr10	45531132	45537456	-	L1Md_T	LINE	L1	chr10	45537243	45537245	+	ENSMUST00000185192.1,ENSMUSG00000098993.1	Gm27731	ENSMUSG00000098993.1	ENSMUST00000185192.1	miRNA	chr10:45537244-45537350
chr10	45578218	45578281	+	G-rich	Low_complexity	Low_complexity	chr10	45578279	45578281	+	ENSMUST00000136905.7,ENSMUSG00000038822.15	Hace1	ENSMUSG00000038822.15	ENSMUST00000136905.7	protein_coding	chr10:45578280-45605587
chr10	45580854	45581220	+	L1Md_F2	LINE	L1	chr10	45581218	45581220	+	ENSMUST00000214524.1,ENSMUSG00000111466.1	Gm47504	ENSMUSG00000111466.1	ENSMUST00000214524.1	processed_pseudogene	chr10:45581219-45581571
chr10	45656778	45656968	-	B2_Mm1t	SINE	B2	chr10	45656954	45656956	+	ENSMUST00000215636.1,ENSMUSG00000111491.1	Gm47503	ENSMUSG00000111491.1	ENSMUST00000215636.1	TEC	chr10:45656955-45661912
chr10	45816419	45817086	+	RLTR26B_MM	LTR	ERVK	chr10	45816860	45816862	-	ENSMUST00000183851.1,ENSMUSG00000098409.1	Gm27410	ENSMUSG00000098409.1	ENSMUST00000183851.1	miRNA	chr10:45816747-45816861
chr10	45837838	45837927	+	GA-rich	Low_complexity	Low_complexity	chr10	45837879	45837881	+	ENSMUST00000215085.1,ENSMUSG00000110874.1	D030045P18Rik	ENSMUSG00000110874.1	ENSMUST00000215085.1	lincRNA	chr10:45837880-45852283
chr10	46232117	46232129	-	ID	SINE	ID	chr10	46232119	46232121	+	ENSMUST00000215053.1,ENSMUSG00000111182.1	Gm35430	ENSMUSG00000111182.1	ENSMUST00000215053.1	lincRNA	chr10:46232120-46237627
chr10	46377608	46377715	+	U6	snRNA	snRNA	chr10	46377608	46377610	+	ENSMUST00000180247.1,ENSMUSG00000094681.1	Gm25740	ENSMUSG00000094681.1	ENSMUST00000180247.1	snRNA	chr10:46377609-46377715
chr10	46838346	46838507	-	U1	snRNA	snRNA	chr10	46838506	46838508	-	ENSMUST00000083784.1,ENSMUSG00000065718.1	Gm25650	ENSMUSG00000065718.1	ENSMUST00000083784.1	snRNA	chr10:46838346-46838507
chr10	47023552	47024465	-	RMER17A2	LTR	ERVK	chr10	47024246	47024248	+	ENSMUST00000214033.1,ENSMUSG00000111419.1	Gm47568	ENSMUSG00000111419.1	ENSMUST00000214033.1	lincRNA	chr10:47024247-47037346
chr10	47640057	47640611	+	RLTR6B_Mm	LTR	ERV1	chr10	47640122	47640124	+	ENSMUST00000217715.1,ENSMUSG00000112702.1	Gm47571	ENSMUSG00000112702.1	ENSMUST00000217715.1	TEC	chr10:47640123-47640534
chr10	47940667	47945114	+	L1Md_F3	LINE	L1	chr10	47941840	47941842	+	ENSMUST00000218293.1,ENSMUSG00000112917.1	Gm47331	ENSMUSG00000112917.1	ENSMUST00000218293.1	processed_pseudogene	chr10:47941841-47945427
chr10	48535198	48536513	-	RLTR10-int	LTR	ERVK	chr10	48536355	48536357	-	ENSMUST00000217071.1,ENSMUSG00000111262.1	Gm47354	ENSMUSG00000111262.1	ENSMUST00000217071.1	lincRNA	chr10:48534981-48536356
chr10	48564467	48569683	+	L1Md_F2	LINE	L1	chr10	48566167	48566169	+	ENSMUST00000213397.1,ENSMUSG00000111585.1	Gm47355	ENSMUSG00000111585.1	ENSMUST00000213397.1	processed_pseudogene	chr10:48566168-48569999
chr10	48619392	48620671	-	L1_Mur2	LINE	L1	chr10	48619394	48619396	-	ENSMUST00000083696.1,ENSMUSG00000065630.1	Gm24256	ENSMUSG00000065630.1	ENSMUST00000083696.1	snRNA	chr10:48619312-48619395
chr10	48677333	48683746	-	L1Md_A	LINE	L1	chr10	48681856	48681858	-	ENSMUST00000214349.1,ENSMUSG00000111436.1	Gm47356	ENSMUSG00000111436.1	ENSMUST00000214349.1	processed_pseudogene	chr10:48678011-48681857
chr10	48677333	48683746	-	L1Md_A	LINE	L1	chr10	48682689	48682691	+	ENSMUST00000214448.1,ENSMUSG00000111581.1	Gm47364	ENSMUSG00000111581.1	ENSMUST00000214448.1	processed_pseudogene	chr10:48682690-48682973
chr10	48690097	48692856	-	L1_Mm	LINE	L1	chr10	48692851	48692853	+	ENSMUST00000218494.1,ENSMUSG00000111900.1	Gm47377	ENSMUSG00000111900.1	ENSMUST00000218494.1	processed_pseudogene	chr10:48692852-48694412
chr10	48692852	48694093	+	L1Md_F2	LINE	L1	chr10	48692851	48692853	+	ENSMUST00000218494.1,ENSMUSG00000111900.1	Gm47377	ENSMUSG00000111900.1	ENSMUST00000218494.1	processed_pseudogene	chr10:48692852-48694412
chr10	49225037	49230279	+	L1Md_T	LINE	L1	chr10	49225652	49225654	-	ENSMUST00000180729.1,ENSMUSG00000097884.1	Gm26543	ENSMUSG00000097884.1	ENSMUST00000180729.1	sense_intronic	chr10:49219422-49225653
chr10	49433157	49433811	-	Lx5c	LINE	L1	chr10	49433385	49433387	-	ENSMUST00000219051.1,ENSMUSG00000056073.16	Grik2	ENSMUSG00000056073.16	ENSMUST00000219051.1	protein_coding	chr10:49193630-49433386
chr10	49799281	49799428	+	MLT1C	LTR	ERVL-MaLR	chr10	49799324	49799326	+	ENSMUST00000215798.1,ENSMUSG00000110832.1	Gm48125	ENSMUSG00000110832.1	ENSMUST00000215798.1	TEC	chr10:49799325-49801079
chr10	49823496	49829795	+	L1Md_T	LINE	L1	chr10	49826269	49826271	+	ENSMUST00000215393.1,ENSMUSG00000111551.1	Gm48128	ENSMUSG00000111551.1	ENSMUST00000215393.1	processed_pseudogene	chr10:49826270-49830115
chr10	49955083	49959847	+	L1VL1	LINE	L1	chr10	49955980	49955982	-	ENSMUST00000213795.1,ENSMUSG00000110973.1	Gm48130	ENSMUSG00000110973.1	ENSMUST00000213795.1	processed_pseudogene	chr10:49955660-49955981
chr10	50178469	50184882	-	L1Md_A	LINE	L1	chr10	50182993	50182995	-	ENSMUST00000219753.1,ENSMUSG00000112349.1	Gm48132	ENSMUSG00000112349.1	ENSMUST00000219753.1	processed_pseudogene	chr10:50179151-50182994
chr10	50178469	50184882	-	L1Md_A	LINE	L1	chr10	50184148	50184150	-	ENSMUST00000218126.1,ENSMUSG00000112049.1	Gm48269	ENSMUSG00000112049.1	ENSMUST00000218126.1	processed_pseudogene	chr10:50183039-50184149
chr10	50253595	50259201	+	L1Md_A	LINE	L1	chr10	50255674	50255676	+	ENSMUST00000218660.1,ENSMUSG00000112667.1	Gm48270	ENSMUSG00000112667.1	ENSMUST00000218660.1	processed_pseudogene	chr10:50255675-50259522
chr10	50295942	50296434	-	MT2_Mm	LTR	ERVL	chr10	50296141	50296143	-	ENSMUST00000215028.1,ENSMUSG00000110779.1	Gm48271	ENSMUSG00000110779.1	ENSMUST00000215028.1	TEC	chr10:50292646-50296142
chr10	50333859	50334938	+	MTA_Mm-int	LTR	ERVL-MaLR	chr10	50334748	50334750	-	ENSMUST00000217629.1,ENSMUSG00000110896.1	Gm48273	ENSMUSG00000110896.1	ENSMUST00000217629.1	TEC	chr10:50333764-50334749
chr10	50422800	50426892	-	RLTR4_MM-int	LTR	ERV1	chr10	50422807	50422809	-	ENSMUST00000215196.1,ENSMUSG00000110720.1	Gm46223	ENSMUSG00000110720.1	ENSMUST00000215196.1	processed_pseudogene	chr10:50422134-50422808
chr10	50422800	50426892	-	RLTR4_MM-int	LTR	ERV1	chr10	50424085	50424087	+	ENSMUST00000216959.1,ENSMUSG00000111083.1	Gm48274	ENSMUSG00000111083.1	ENSMUST00000216959.1	TEC	chr10:50424086-50424340
chr10	50422800	50426892	-	RLTR4_MM-int	LTR	ERV1	chr10	50425329	50425331	-	ENSMUST00000213811.1,ENSMUSG00000111202.1	Gm48275	ENSMUSG00000111202.1	ENSMUST00000213811.1	lincRNA	chr10:50425044-50425330
chr10	50728744	50729036	-	L1MA9	LINE	L1	chr10	50728957	50728959	+	ENSMUST00000219085.1,ENSMUSG00000038774.9	Ascc3	ENSMUSG00000038774.9	ENSMUST00000219085.1	protein_coding	chr10:50728958-50734463
chr10	50808786	50814870	-	L1Md_F2	LINE	L1	chr10	50813724	50813726	+	ENSMUST00000220349.1,ENSMUSG00000112594.1	Gm48333	ENSMUSG00000112594.1	ENSMUST00000220349.1	processed_pseudogene	chr10:50813725-50813990
chr10	50866145	50866364	-	7SK	RNA	RNA	chr10	50866363	50866365	-	ENSMUST00000122686.1,ENSMUSG00000084635.1	Gm23883	ENSMUSG00000084635.1	ENSMUST00000122686.1	misc_RNA	chr10:50866075-50866364
chr10	51182109	51182302	-	Arthur1B	DNA	hAT-Tip100	chr10	51182298	51182300	+	ENSMUST00000122500.1,ENSMUSG00000084449.1	Gm26257	ENSMUSG00000084449.1	ENSMUST00000122500.1	snRNA	chr10:51182299-51182405
chr10	51526284	51526514	+	LTRIS2	LTR	ERV1	chr10	51526339	51526341	+	ENSMUST00000220221.1,ENSMUSG00000112843.1	Gm46224	ENSMUSG00000112843.1	ENSMUST00000220221.1	lincRNA	chr10:51526340-51531161
chr10	51541575	51546533	+	L1Md_F3	LINE	L1	chr10	51543034	51543036	+	ENSMUST00000219702.1,ENSMUSG00000112226.1	Gm48786	ENSMUSG00000112226.1	ENSMUST00000219702.1	processed_pseudogene	chr10:51543035-51546848
chr10	51757235	51757351	-	ORR1D1	LTR	ERVL-MaLR	chr10	51757256	51757258	+	ENSMUST00000220412.1,ENSMUSG00000112270.1	Gm47613	ENSMUSG00000112270.1	ENSMUST00000220412.1	lincRNA	chr10:51757257-51761015
chr10	51784722	51787114	+	Lx	LINE	L1	chr10	51786940	51786942	-	ENSMUST00000217696.1,ENSMUSG00000112337.1	Gm47614	ENSMUSG00000112337.1	ENSMUST00000217696.1	lincRNA	chr10:51781993-51786941
chr10	51985055	51991503	-	L1Md_T	LINE	L1	chr10	51989578	51989580	-	ENSMUST00000219916.1,ENSMUSG00000112557.1	Gm47626	ENSMUSG00000112557.1	ENSMUST00000219916.1	processed_pseudogene	chr10:51986342-51989579
chr10	52428788	52428975	-	B2_Mm2	SINE	B2	chr10	52428930	52428932	+	ENSMUST00000218983.1,ENSMUSG00000023068.16	Nus1	ENSMUSG00000023068.16	ENSMUST00000218983.1	protein_coding	chr10:52428931-52433372
chr10	52445137	52451393	-	L1Md_F2	LINE	L1	chr10	52450368	52450370	+	ENSMUST00000218661.1,ENSMUSG00000112563.1	Gm47608	ENSMUSG00000112563.1	ENSMUST00000218661.1	TEC	chr10:52450369-52452515
chr10	52453496	52453591	+	PB1D7	SINE	Alu	chr10	52453590	52453592	-	ENSMUST00000220145.1,ENSMUSG00000112361.1	Gm47607	ENSMUSG00000112361.1	ENSMUST00000220145.1	TEC	chr10:52451409-52453591
chr10	52521149	52526539	+	L1Md_T	LINE	L1	chr10	52523021	52523023	+	ENSMUST00000219080.1,ENSMUSG00000112149.1	Gm47611	ENSMUSG00000112149.1	ENSMUST00000219080.1	processed_pseudogene	chr10:52523022-52526859
chr10	52593575	52594131	+	RLTR34D_MM	LTR	ERVK	chr10	52594011	52594013	+	ENSMUST00000217856.1,ENSMUSG00000112552.1	Gm36065	ENSMUSG00000112552.1	ENSMUST00000217856.1	lincRNA	chr10:52594012-52594619
chr10	52593575	52594131	+	RLTR34D_MM	LTR	ERVK	chr10	52594015	52594017	+	ENSMUST00000219654.1,ENSMUSG00000112552.1	Gm36065	ENSMUSG00000112552.1	ENSMUST00000219654.1	lincRNA	chr10:52594016-52600673
chr10	52905637	52905741	+	U6	snRNA	snRNA	chr10	52905637	52905639	+	ENSMUST00000157697.1,ENSMUSG00000088322.1	Gm25664	ENSMUSG00000088322.1	ENSMUST00000157697.1	snRNA	chr10:52905638-52905744
chr10	53204192	53207095	-	ERVB5_1-I_MM-int	LTR	ERVK	chr10	53204314	53204316	-	ENSMUST00000218912.1,ENSMUSG00000112853.1	Gm47637	ENSMUSG00000112853.1	ENSMUST00000218912.1	TEC	chr10:53203022-53204315
chr10	53234993	53235246	-	MTE2a-int	LTR	ERVL-MaLR	chr10	53235186	53235188	+	ENSMUST00000219101.1,ENSMUSG00000112835.1	Gm36173	ENSMUSG00000112835.1	ENSMUST00000219101.1	lincRNA	chr10:53235187-53260736
chr10	53280139	53280276	-	L2	LINE	L2	chr10	53280147	53280149	-	ENSMUST00000219673.1,ENSMUSG00000038594.9	Cep85l	ENSMUSG00000038594.9	ENSMUST00000219673.1	protein_coding	chr10:53278045-53280148
chr10	53349773	53350607	-	Lx8	LINE	L1	chr10	53349822	53349824	-	ENSMUST00000220376.1,ENSMUSG00000038594.9	Cep85l	ENSMUSG00000038594.9	ENSMUST00000220376.1	protein_coding	chr10:53278039-53349823
chr10	53409757	53409939	+	RLTR16B_MM	LTR	ERVK	chr10	53409881	53409883	+	ENSMUST00000218737.1,ENSMUSG00000112132.1	Gm36229	ENSMUSG00000112132.1	ENSMUST00000218737.1	lincRNA	chr10:53409882-53424272
chr10	53488082	53488468	-	MTEa	LTR	ERVL-MaLR	chr10	53488221	53488223	+	ENSMUST00000218925.1,ENSMUSG00000112733.1	AC155941.1	ENSMUSG00000112733.1	ENSMUST00000218925.1	lincRNA	chr10:53488222-53514165
chr10	53510329	53511184	-	RMER19B	LTR	ERVK	chr10	53510547	53510549	+	ENSMUST00000218707.1,ENSMUSG00000112733.1	AC155941.1	ENSMUSG00000112733.1	ENSMUST00000218707.1	lincRNA	chr10:53510548-53514547
chr10	53569620	53570112	-	MT2_Mm	LTR	ERVL	chr10	53569668	53569670	+	ENSMUST00000218795.1,ENSMUSG00000112530.1	Gm47738	ENSMUSG00000112530.1	ENSMUST00000218795.1	antisense	chr10:53569669-53571582
chr10	53575563	53576055	-	MT2_Mm	LTR	ERVL	chr10	53575755	53575757	-	ENSMUST00000219731.1,ENSMUSG00000112731.1	Gm47739	ENSMUSG00000112731.1	ENSMUST00000219731.1	sense_intronic	chr10:53570625-53575756
chr10	53596645	53596782	+	GC_rich	Low_complexity	Low_complexity	chr10	53596756	53596758	+	ENSMUST00000219271.1,ENSMUSG00000019857.7	Asf1a	ENSMUSG00000019857.7	ENSMUST00000219271.1	protein_coding	chr10:53596757-53607912
chr10	53678791	53679190	-	MTA_Mm	LTR	ERVL-MaLR	chr10	53679053	53679055	-	ENSMUST00000168949.1,ENSMUSG00000019856.14	Fam184a	ENSMUSG00000019856.14	ENSMUST00000168949.1	protein_coding	chr10:53638180-53679054
chr10	54063672	54063981	+	MARNA	DNA	TcMar-Mariner	chr10	54063810	54063812	+	ENSMUST00000219148.1,ENSMUSG00000112824.1	Gm47917	ENSMUSG00000112824.1	ENSMUST00000219148.1	antisense	chr10:54063811-54065069
chr10	54211306	54216404	+	L1Md_F3	LINE	L1	chr10	54211733	54211735	+	ENSMUST00000220047.1,ENSMUSG00000112013.1	Gm47967	ENSMUSG00000112013.1	ENSMUST00000220047.1	processed_pseudogene	chr10:54211734-54212823
chr10	54211306	54216404	+	L1Md_F3	LINE	L1	chr10	54212870	54212872	+	ENSMUST00000218389.1,ENSMUSG00000112516.1	Gm47968	ENSMUSG00000112516.1	ENSMUST00000218389.1	processed_pseudogene	chr10:54212871-54216723
chr10	54311224	54311331	-	U6	snRNA	snRNA	chr10	54311330	54311332	-	ENSMUST00000178683.1,ENSMUSG00000094738.1	Gm26177	ENSMUSG00000094738.1	ENSMUST00000178683.1	snRNA	chr10:54311225-54311331
chr10	54712689	54713838	-	MLTR25A	LTR	ERVK	chr10	54713036	54713038	-	ENSMUST00000158362.1,ENSMUSG00000088987.1	Gm25602	ENSMUSG00000088987.1	ENSMUST00000158362.1	snRNA	chr10:54712976-54713037
chr10	56106784	56106948	+	RMER15	LTR	ERVL	chr10	56106916	56106918	+	ENSMUST00000063138.7,ENSMUSG00000047669.8	Msl3l2	ENSMUSG00000047669.8	ENSMUST00000063138.7	protein_coding	chr10:56106917-56116880
chr10	57117006	57117494	+	MT2B1	LTR	ERVL	chr10	57117221	57117223	+	ENSMUST00000218944.1,ENSMUSG00000112345.1	Gm40652	ENSMUSG00000112345.1	ENSMUST00000218944.1	lincRNA	chr10:57117222-57157621
chr10	57174024	57174128	+	U6	snRNA	snRNA	chr10	57174029	57174031	+	ENSMUST00000157628.1,ENSMUSG00000088253.1	Gm24285	ENSMUSG00000088253.1	ENSMUST00000157628.1	snRNA	chr10:57174030-57174129
chr10	57486332	57486361	+	GC_rich	Low_complexity	Low_complexity	chr10	57486350	57486352	-	ENSMUST00000180831.2,ENSMUSG00000097370.2	4930467K11Rik	ENSMUSG00000097370.2	ENSMUST00000180831.2	lincRNA	chr10:57478381-57486351
chr10	57486409	57486459	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	57486424	57486426	+	ENSMUST00000220042.1,ENSMUSG00000019878.8	Hsf2	ENSMUSG00000019878.8	ENSMUST00000220042.1	protein_coding	chr10:57486425-57512864
chr10	57500369	57500390	+	(T)n	Simple_repeat	Simple_repeat	chr10	57500373	57500375	+	ENSMUST00000218251.1,ENSMUSG00000019878.8	Hsf2	ENSMUSG00000019878.8	ENSMUST00000218251.1	protein_coding	chr10:57500374-57504900
chr10	57650714	57651035	-	L1MA6	LINE	L1	chr10	57650980	57650982	+	ENSMUST00000066028.12,ENSMUSG00000019876.15	Pkib	ENSMUSG00000019876.15	ENSMUST00000066028.12	protein_coding	chr10:57650981-57737083
chr10	57650714	57651035	-	L1MA6	LINE	L1	chr10	57650993	57650995	+	ENSMUST00000175852.1,ENSMUSG00000019876.15	Pkib	ENSMUSG00000019876.15	ENSMUST00000175852.1	protein_coding	chr10:57650994-57736371
chr10	58273402	58273766	-	L2	LINE	L2	chr10	58273445	58273447	+	ENSMUST00000160677.1,ENSMUSG00000038039.13	Gcc2	ENSMUSG00000038039.13	ENSMUST00000160677.1	protein_coding	chr10:58273446-58276294
chr10	58349499	58349604	-	U6	snRNA	snRNA	chr10	58349603	58349605	-	ENSMUST00000093703.1,ENSMUSG00000070214.1	Gm23058	ENSMUSG00000070214.1	ENSMUST00000093703.1	snRNA	chr10:58349498-58349604
chr10	58696348	58698689	-	Lx7	LINE	L1	chr10	58696744	58696746	+	ENSMUST00000218015.1,ENSMUSG00000091526.2	BB019430	ENSMUSG00000091526.2	ENSMUST00000218015.1	lincRNA	chr10:58696745-58704277
chr10	58704645	58705027	-	Lx8	LINE	L1	chr10	58704650	58704652	-	ENSMUST00000157369.1,ENSMUSG00000087994.1	Gm25055	ENSMUSG00000087994.1	ENSMUST00000157369.1	snoRNA	chr10:58704576-58704651
chr10	58718180	58718280	+	(GAAA)n	Simple_repeat	Simple_repeat	chr10	58718209	58718211	-	ENSMUST00000169859.1,ENSMUSG00000091731.1	Gm17542	ENSMUSG00000091731.1	ENSMUST00000169859.1	protein_coding	chr10:58713606-58718210
chr10	58962971	58967423	-	L1Md_T	LINE	L1	chr10	58965542	58965544	+	ENSMUST00000183751.1,ENSMUSG00000098653.1	Gm27672	ENSMUSG00000098653.1	ENSMUST00000183751.1	miRNA	chr10:58965543-58965746
chr10	59195654	59195700	+	(CA)n	Simple_repeat	Simple_repeat	chr10	59195698	59195700	+	ENSMUST00000158119.1,ENSMUSG00000088744.1	Gm23223	ENSMUSG00000088744.1	ENSMUST00000158119.1	snoRNA	chr10:59195699-59195825
chr10	59817796	59817987	+	RMER30	DNA	hAT-Charlie	chr10	59817796	59817798	-	ENSMUST00000104610.2,ENSMUSG00000094824.1	Gm23803	ENSMUSG00000094824.1	ENSMUST00000104610.2	snoRNA	chr10:59817666-59817797
chr10	59998267	59998344	+	PB1D11	SINE	Alu	chr10	59998309	59998311	-	ENSMUST00000183113.1,ENSMUSG00000020107.10	Anapc16	ENSMUSG00000020107.10	ENSMUST00000183113.1	protein_coding	chr10:59995847-59998310
chr10	60188678	60188719	+	B3	SINE	B2	chr10	60188706	60188708	-	ENSMUST00000068690.6,ENSMUSG00000057337.13	Chst3	ENSMUSG00000057337.13	ENSMUST00000068690.6	protein_coding	chr10:60181534-60188707
chr10	60211164	60211314	+	(CATA)n	Simple_repeat	Simple_repeat	chr10	60211250	60211252	-	ENSMUST00000103902.1,ENSMUSG00000077090.1	Gm22117	ENSMUSG00000077090.1	ENSMUST00000103902.1	miRNA	chr10:60211185-60211251
chr10	60652861	60653154	-	ORR1A2	LTR	ERVL-MaLR	chr10	60653032	60653034	-	ENSMUST00000153677.1,ENSMUSG00000012819.15	Cdh23	ENSMUSG00000012819.15	ENSMUST00000153677.1	protein_coding	chr10:60628480-60653033
chr10	60960693	60960785	+	(TG)n	Simple_repeat	Simple_repeat	chr10	60960722	60960724	+	ENSMUST00000116876.1,ENSMUSG00000080526.1	Mir466j	ENSMUSG00000080526.1	ENSMUST00000116876.1	miRNA	chr10:60960723-60960844
chr10	61042548	61043041	-	MT2_Mm	LTR	ERVL	chr10	61042810	61042812	-	ENSMUST00000177065.1,ENSMUSG00000093489.1	Gm20625	ENSMUSG00000093489.1	ENSMUST00000177065.1	lincRNA	chr10:61038229-61042811
chr10	61147671	61147693	+	GC_rich	Low_complexity	Low_complexity	chr10	61147673	61147675	-	ENSMUST00000092498.11,ENSMUSG00000020097.14	Sgpl1	ENSMUSG00000020097.14	ENSMUST00000092498.11	protein_coding	chr10:61098642-61147674
chr10	61147671	61147693	+	GC_rich	Low_complexity	Low_complexity	chr10	61147675	61147677	-	ENSMUST00000137833.1,ENSMUSG00000020097.14	Sgpl1	ENSMUSG00000020097.14	ENSMUST00000137833.1	protein_coding	chr10:61114094-61147676
chr10	61273419	61273508	+	G-rich	Low_complexity	Low_complexity	chr10	61273437	61273439	-	ENSMUST00000092486.10,ENSMUSG00000059901.12	Adamts14	ENSMUSG00000059901.12	ENSMUST00000092486.10	protein_coding	chr10:61197112-61273438
chr10	61498659	61498963	-	ORR1A4	LTR	ERVL-MaLR	chr10	61498843	61498845	-	ENSMUST00000217859.1,ENSMUSG00000112058.1	Gm47593	ENSMUSG00000112058.1	ENSMUST00000217859.1	antisense	chr10:61496893-61498844
chr10	61570906	61570918	-	B2_Mm1t	SINE	B2	chr10	61570910	61570912	+	ENSMUST00000219114.1,ENSMUSG00000112255.1	Gm47594	ENSMUSG00000112255.1	ENSMUST00000219114.1	TEC	chr10:61570911-61575064
chr10	61691050	61691210	-	B4A	SINE	B4	chr10	61691124	61691126	+	ENSMUST00000219174.1,ENSMUSG00000020088.10	Sar1a	ENSMUSG00000020088.10	ENSMUST00000219174.1	protein_coding	chr10:61691125-61691443
chr10	61715237	61715272	+	GC_rich	Low_complexity	Low_complexity	chr10	61715262	61715264	+	ENSMUST00000105455.8,ENSMUSG00000020085.15	Aifm2	ENSMUSG00000020085.15	ENSMUST00000105455.8	protein_coding	chr10:61715263-61738653
chr10	62139869	62141312	-	ORR1A4-int	LTR	ERVL-MaLR	chr10	62139869	62139871	-	ENSMUST00000027719.11,ENSMUSG00000020083.13	Fam241b	ENSMUSG00000020083.13	ENSMUST00000027719.11	protein_coding	chr10:62108835-62139870
chr10	62252427	62252520	+	MIRb	SINE	MIR	chr10	62252437	62252439	+	ENSMUST00000020278.5,ENSMUSG00000020081.5	Tacr2	ENSMUSG00000020081.5	ENSMUST00000020278.5	protein_coding	chr10:62252438-62265990
chr10	62342656	62342721	-	MIRc	SINE	MIR	chr10	62342698	62342700	-	ENSMUST00000143179.1,ENSMUSG00000037012.18	Hk1	ENSMUSG00000037012.18	ENSMUST00000143179.1	protein_coding	chr10:62296713-62342699
chr10	62342656	62342721	-	MIRc	SINE	MIR	chr10	62342707	62342709	-	ENSMUST00000142527.1,ENSMUSG00000037012.18	Hk1	ENSMUSG00000037012.18	ENSMUST00000142527.1	protein_coding	chr10:62296958-62342708
chr10	62430781	62430969	+	B2_Mm2	SINE	B2	chr10	62430967	62430969	-	ENSMUST00000159042.1,ENSMUSG00000020079.15	Supv3l1	ENSMUSG00000020079.15	ENSMUST00000159042.1	protein_coding	chr10:62429443-62430968
chr10	62486595	62486623	+	GC_rich	Low_complexity	Low_complexity	chr10	62486597	62486599	-	ENSMUST00000092473.4,ENSMUSG00000020078.16	Vps26a	ENSMUSG00000020078.16	ENSMUST00000092473.4	protein_coding	chr10:62455235-62486598
chr10	62563532	62563711	+	B2_Mm1t	SINE	B2	chr10	62563577	62563579	-	ENSMUST00000162263.1,ENSMUSG00000036955.16	Kif1bp	ENSMUSG00000036955.16	ENSMUST00000162263.1	protein_coding	chr10:62559599-62563578
chr10	62634443	62634673	+	L1MB5	LINE	L1	chr10	62634505	62634507	-	ENSMUST00000217970.1,ENSMUSG00000020076.7	Ddx50	ENSMUSG00000020076.7	ENSMUST00000217970.1	protein_coding	chr10:62622840-62634506
chr10	62641155	62641317	+	ID_B1	SINE	B4	chr10	62641163	62641165	-	ENSMUST00000219076.1,ENSMUSG00000020076.7	Ddx50	ENSMUSG00000020076.7	ENSMUST00000219076.1	protein_coding	chr10:62640495-62641164
chr10	62647599	62647785	+	MER46C	DNA	TcMar-Tigger	chr10	62647780	62647782	-	ENSMUST00000220370.1,ENSMUSG00000020076.7	Ddx50	ENSMUSG00000020076.7	ENSMUST00000220370.1	protein_coding	chr10:62646866-62647781
chr10	62649749	62649863	+	L1MB3	LINE	L1	chr10	62649752	62649754	-	ENSMUST00000218372.1,ENSMUSG00000020076.7	Ddx50	ENSMUSG00000020076.7	ENSMUST00000218372.1	protein_coding	chr10:62616226-62649753
chr10	62760322	62760350	+	AT_rich	Low_complexity	Low_complexity	chr10	62760348	62760350	-	ENSMUST00000220236.1,ENSMUSG00000020074.7	Ccar1	ENSMUSG00000020074.7	ENSMUST00000220236.1	protein_coding	chr10:62753273-62760349
chr10	62859985	62860124	-	B1_Mus1	SINE	Alu	chr10	62859993	62859995	-	ENSMUST00000220243.1,ENSMUSG00000112309.1	Gm48353	ENSMUSG00000112309.1	ENSMUST00000220243.1	TEC	chr10:62858124-62859994
chr10	62892910	62893037	-	MER21B	LTR	ERVL	chr10	62892985	62892987	-	ENSMUST00000227494.1,ENSMUSG00000047146.17	Tet1	ENSMUSG00000047146.17	ENSMUST00000227494.1	protein_coding	chr10:62879873-62892986
chr10	62899036	62899182	-	B1_Mus1	SINE	Alu	chr10	62899117	62899119	-	ENSMUST00000174189.1,ENSMUSG00000047146.17	Tet1	ENSMUSG00000047146.17	ENSMUST00000174189.1	protein_coding	chr10:62804577-62899118
chr10	62908789	62909136	-	ORR1A0	LTR	ERVL-MaLR	chr10	62908995	62908997	-	ENSMUST00000218782.1,ENSMUSG00000047146.17	Tet1	ENSMUSG00000047146.17	ENSMUST00000218782.1	protein_coding	chr10:62879873-62908996
chr10	62919448	62919588	-	B1_Mus2	SINE	Alu	chr10	62919558	62919560	+	ENSMUST00000158049.1,ENSMUSG00000088674.1	Gm22803	ENSMUSG00000088674.1	ENSMUST00000158049.1	misc_RNA	chr10:62919559-62919841
chr10	62923515	62923562	+	(A)n	Simple_repeat	Simple_repeat	chr10	62923523	62923525	-	ENSMUST00000158250.1,ENSMUSG00000088875.1	Gm25862	ENSMUSG00000088875.1	ENSMUST00000158250.1	snoRNA	chr10:62923396-62923524
chr10	62965606	62965788	-	B2_Mm1a	SINE	B2	chr10	62965680	62965682	+	ENSMUST00000139212.7,ENSMUSG00000036875.15	Dna2	ENSMUSG00000036875.15	ENSMUST00000139212.7	protein_coding	chr10:62965681-62974184
chr10	62965928	62966128	+	ID_B1	SINE	B4	chr10	62965975	62965977	+	ENSMUST00000137378.1,ENSMUSG00000036875.15	Dna2	ENSMUSG00000036875.15	ENSMUST00000137378.1	protein_coding	chr10:62965976-62974179
chr10	62998768	62998917	-	B1_Mm	SINE	Alu	chr10	62998778	62998780	+	ENSMUST00000129470.1,ENSMUSG00000084985.1	Gm16135	ENSMUSG00000084985.1	ENSMUST00000129470.1	antisense	chr10:62998779-62999689
chr10	63059616	63060330	+	RMER6A	LTR	ERVK	chr10	63060161	63060163	+	ENSMUST00000219204.1,ENSMUSG00000112129.1	Pbld1	ENSMUSG00000112129.1	ENSMUST00000219204.1	protein_coding	chr10:63060162-63060815
chr10	63243767	63243910	+	C-rich	Low_complexity	Low_complexity	chr10	63243809	63243811	+	ENSMUST00000219856.1,ENSMUSG00000020064.9	Herc4	ENSMUSG00000020064.9	ENSMUST00000219856.1	protein_coding	chr10:63243810-63245716
chr10	63243767	63243910	+	C-rich	Low_complexity	Low_complexity	chr10	63243828	63243830	+	ENSMUST00000219230.1,ENSMUSG00000020064.9	Herc4	ENSMUSG00000020064.9	ENSMUST00000219230.1	protein_coding	chr10:63243829-63266946
chr10	63250774	63250932	-	B1_Mur1	SINE	Alu	chr10	63250931	63250933	+	ENSMUST00000218100.1,ENSMUSG00000112411.1	Gm19337	ENSMUSG00000112411.1	ENSMUST00000218100.1	TEC	chr10:63250932-63252515
chr10	63250932	63250951	-	B4	SINE	B4	chr10	63250931	63250933	+	ENSMUST00000218100.1,ENSMUSG00000112411.1	Gm19337	ENSMUSG00000112411.1	ENSMUST00000218100.1	TEC	chr10:63250932-63252515
chr10	63269971	63270117	-	B1_Mur2	SINE	Alu	chr10	63270089	63270091	+	ENSMUST00000217955.1,ENSMUSG00000112759.1	Gm47615	ENSMUSG00000112759.1	ENSMUST00000217955.1	TEC	chr10:63270090-63270868
chr10	63295715	63295801	+	PB1D9	SINE	Alu	chr10	63295792	63295794	-	ENSMUST00000181342.1,ENSMUSG00000096991.1	Gm26789	ENSMUSG00000096991.1	ENSMUST00000181342.1	antisense	chr10:63292286-63295793
chr10	63325464	63325648	-	B2_Mm2	SINE	B2	chr10	63325625	63325627	-	ENSMUST00000148516.1,ENSMUSG00000020063.16	Sirt1	ENSMUSG00000020063.16	ENSMUST00000148516.1	protein_coding	chr10:63322147-63325626
chr10	63353723	63354090	+	ORR1A4	LTR	ERVL-MaLR	chr10	63353852	63353854	+	ENSMUST00000128807.1,ENSMUSG00000085372.1	Gm16145	ENSMUSG00000085372.1	ENSMUST00000128807.1	antisense	chr10:63353853-63366887
chr10	65907710	65908708	+	RLTR13D5	LTR	ERVK	chr10	65908249	65908251	-	ENSMUST00000218955.1,ENSMUSG00000112913.1	Gm30853	ENSMUSG00000112913.1	ENSMUST00000218955.1	lincRNA	chr10:65875605-65908250
chr10	65907710	65908708	+	RLTR13D5	LTR	ERVK	chr10	65908238	65908240	-	ENSMUST00000218367.1,ENSMUSG00000112913.1	Gm30853	ENSMUSG00000112913.1	ENSMUST00000218367.1	lincRNA	chr10:65875788-65908239
chr10	66123026	66123418	+	Lx2B	LINE	L1	chr10	66123075	66123077	-	ENSMUST00000188279.1,ENSMUSG00000100000.6	1700023F02Rik	ENSMUSG00000100000.6	ENSMUST00000188279.1	lincRNA	chr10:66120676-66123076
chr10	66145179	66145447	+	Lx8	LINE	L1	chr10	66145295	66145297	+	ENSMUST00000220265.1,ENSMUSG00000112210.1	4930407I19Rik	ENSMUSG00000112210.1	ENSMUST00000220265.1	lincRNA	chr10:66145296-66179514
chr10	66170400	66170506	-	U6	snRNA	snRNA	chr10	66170505	66170507	-	ENSMUST00000083771.1,ENSMUSG00000065705.1	Gm22829	ENSMUSG00000065705.1	ENSMUST00000083771.1	snRNA	chr10:66170401-66170506
chr10	66691606	66693703	+	MMERVK10C-int	LTR	ERVK	chr10	66691614	66691616	-	ENSMUST00000218242.1,ENSMUSG00000112247.1	Gm47894	ENSMUSG00000112247.1	ENSMUST00000218242.1	processed_pseudogene	chr10:66691342-66691615
chr10	66758976	66759647	-	RMER17A2	LTR	ERVK	chr10	66759453	66759455	+	ENSMUST00000220363.1,ENSMUSG00000112383.1	Gm47895	ENSMUSG00000112383.1	ENSMUST00000220363.1	lincRNA	chr10:66759454-66762095
chr10	66809539	66810032	+	MT2_Mm	LTR	ERVL	chr10	66809839	66809841	+	ENSMUST00000220426.1,ENSMUSG00000112425.1	Gm47896	ENSMUSG00000112425.1	ENSMUST00000220426.1	lincRNA	chr10:66809840-66822354
chr10	66823802	66824216	-	Lx8	LINE	L1	chr10	66824168	66824170	+	ENSMUST00000217783.1,ENSMUSG00000112514.1	Gm47897	ENSMUSG00000112514.1	ENSMUST00000217783.1	lincRNA	chr10:66824169-66827403
chr10	66917556	66917907	-	ORR1C1	LTR	ERVL-MaLR	chr10	66917738	66917740	-	ENSMUST00000219021.1,ENSMUSG00000097134.2	1110002J07Rik	ENSMUSG00000097134.2	ENSMUST00000219021.1	lincRNA	chr10:66915636-66917739
chr10	66920239	66920333	-	MIR3	SINE	MIR	chr10	66920257	66920259	-	ENSMUST00000181710.2,ENSMUSG00000097134.2	1110002J07Rik	ENSMUSG00000097134.2	ENSMUST00000181710.2	lincRNA	chr10:66912489-66920258
chr10	66920239	66920333	-	MIR3	SINE	MIR	chr10	66920301	66920303	+	ENSMUST00000181018.2,ENSMUSG00000097921.2	Gm26576	ENSMUSG00000097921.2	ENSMUST00000181018.2	lincRNA	chr10:66920302-66923599
chr10	67028281	67028427	-	B1_Mm	SINE	Alu	chr10	67028364	67028366	+	ENSMUST00000218205.1,ENSMUSG00000112925.1	Gm31763	ENSMUSG00000112925.1	ENSMUST00000218205.1	antisense	chr10:67028365-67030088
chr10	67037309	67037353	+	G-rich	Low_complexity	Low_complexity	chr10	67037321	67037323	-	ENSMUST00000219431.1,ENSMUSG00000019873.8	Reep3	ENSMUSG00000019873.8	ENSMUST00000219431.1	protein_coding	chr10:67035219-67037322
chr10	67096478	67096597	+	(CGGAG)n	Simple_repeat	Simple_repeat	chr10	67096491	67096493	+	ENSMUST00000174317.7,ENSMUSG00000037876.17	Jmjd1c	ENSMUSG00000037876.17	ENSMUST00000174317.7	protein_coding	chr10:67096492-67224962
chr10	67235868	67235961	-	U6	snRNA	snRNA	chr10	67235960	67235962	-	ENSMUST00000158873.1,ENSMUSG00000089498.1	Gm26359	ENSMUSG00000089498.1	ENSMUST00000158873.1	snRNA	chr10:67235861-67235961
chr10	67297098	67297644	-	MER44D	DNA	TcMar-Tigger	chr10	67297405	67297407	+	ENSMUST00000220398.1,ENSMUSG00000112314.1	Gm49454	ENSMUSG00000112314.1	ENSMUST00000220398.1	lincRNA	chr10:67297406-67418927
chr10	67423759	67424050	-	MTEb	LTR	ERVL-MaLR	chr10	67423993	67423995	+	ENSMUST00000220168.1,ENSMUSG00000112848.1	Gm32023	ENSMUSG00000112848.1	ENSMUST00000220168.1	lincRNA	chr10:67423994-67425251
chr10	67443223	67443458	-	MTE2b	LTR	ERVL-MaLR	chr10	67443428	67443430	-	ENSMUST00000219056.1,ENSMUSG00000112726.1	Gm47531	ENSMUSG00000112726.1	ENSMUST00000219056.1	lincRNA	chr10:67436090-67443429
chr10	67571970	67572091	+	MLT1L	LTR	ERVL-MaLR	chr10	67571988	67571990	-	ENSMUST00000218306.1,ENSMUSG00000112141.1	4930563J15Rik	ENSMUSG00000112141.1	ENSMUST00000218306.1	lincRNA	chr10:67568522-67571989
chr10	67571970	67572091	+	MLT1L	LTR	ERVL-MaLR	chr10	67572041	67572043	+	ENSMUST00000099661.2,ENSMUSG00000074999.2	Gm10797	ENSMUSG00000074999.2	ENSMUST00000099661.2	TEC	chr10:67572042-67574263
chr10	67901090	67901460	-	MTE2b	LTR	ERVL-MaLR	chr10	67901336	67901338	-	ENSMUST00000132870.7,ENSMUSG00000037855.15	Zfp365	ENSMUSG00000037855.15	ENSMUST00000132870.7	protein_coding	chr10:67886168-67901337
chr10	67973381	67973914	-	RLTR11A2	LTR	ERVK	chr10	67973707	67973709	-	ENSMUST00000219339.1,ENSMUSG00000112899.1	4930521O17Rik	ENSMUSG00000112899.1	ENSMUST00000219339.1	lincRNA	chr10:67962479-67973708
chr10	68312754	68313125	-	ORR1E	LTR	ERVL-MaLR	chr10	68313007	68313009	+	ENSMUST00000218333.1,ENSMUSG00000112275.1	Gm47078	ENSMUSG00000112275.1	ENSMUST00000218333.1	lincRNA	chr10:68313008-68326978
chr10	69097748	69097905	+	B3	SINE	B2	chr10	69097865	69097867	-	ENSMUST00000218524.1,ENSMUSG00000112083.1	Gm47107	ENSMUSG00000112083.1	ENSMUST00000218524.1	lincRNA	chr10:69096662-69097866
chr10	69350782	69350924	+	B1_Mus1	SINE	Alu	chr10	69350829	69350831	-	ENSMUST00000152448.1,ENSMUSG00000019942.13	Cdk1	ENSMUSG00000019942.13	ENSMUST00000152448.1	protein_coding	chr10:69340766-69350830
chr10	69533736	69533784	+	(TG)n	Simple_repeat	Simple_repeat	chr10	69533771	69533773	+	ENSMUST00000182379.6,ENSMUSG00000069601.14	Ank3	ENSMUSG00000069601.14	ENSMUST00000182379.6	protein_coding	chr10:69533772-69720860
chr10	69533736	69533784	+	(TG)n	Simple_repeat	Simple_repeat	chr10	69533771	69533773	+	ENSMUST00000182194.7,ENSMUSG00000069601.14	Ank3	ENSMUSG00000069601.14	ENSMUST00000182194.7	protein_coding	chr10:69533772-69872460
chr10	69533736	69533784	+	(TG)n	Simple_repeat	Simple_repeat	chr10	69533771	69533773	+	ENSMUST00000182884.7,ENSMUSG00000069601.14	Ank3	ENSMUSG00000069601.14	ENSMUST00000182884.7	protein_coding	chr10:69533772-70027438
chr10	69706277	69706339	+	(TC)n	Simple_repeat	Simple_repeat	chr10	69706295	69706297	+	ENSMUST00000182142.1,ENSMUSG00000069601.14	Ank3	ENSMUSG00000069601.14	ENSMUST00000182142.1	protein_coding	chr10:69706296-69710476
chr10	70245068	70245106	+	CT-rich	Low_complexity	Low_complexity	chr10	70245099	70245101	+	ENSMUST00000046807.6,ENSMUSG00000037762.6	Slc16a9	ENSMUSG00000037762.6	ENSMUST00000046807.6	protein_coding	chr10:70245100-70285968
chr10	70288169	70288251	+	RMER17C	LTR	ERVK	chr10	70288175	70288177	-	ENSMUST00000064271.4,ENSMUSG00000052426.4	Gm9877	ENSMUSG00000052426.4	ENSMUST00000064271.4	pseudogene	chr10:70285549-70288176
chr10	70415380	70415922	-	MT2B2	LTR	ERVL	chr10	70415580	70415582	-	ENSMUST00000219437.1,ENSMUSG00000112884.1	Gm47946	ENSMUSG00000112884.1	ENSMUST00000219437.1	lincRNA	chr10:70412460-70415581
chr10	70651767	70651985	+	L1ME1	LINE	L1	chr10	70651924	70651926	-	ENSMUST00000162571.7,ENSMUSG00000037747.9	Phyhipl	ENSMUSG00000037747.9	ENSMUST00000162571.7	protein_coding	chr10:70601049-70651925
chr10	70846952	70847362	-	RLTR23	LTR	ERV1	chr10	70847016	70847018	+	ENSMUST00000217694.1,ENSMUSG00000112883.1	Gm48023	ENSMUSG00000112883.1	ENSMUST00000217694.1	lincRNA	chr10:70847017-70853726
chr10	70882103	70882210	+	U6	snRNA	snRNA	chr10	70882103	70882105	+	ENSMUST00000178420.1,ENSMUSG00000094703.1	Gm24486	ENSMUSG00000094703.1	ENSMUST00000178420.1	snRNA	chr10:70882104-70882210
chr10	71082785	71082885	-	Tigger7	DNA	TcMar-Tigger	chr10	71082875	71082877	+	ENSMUST00000160178.1,ENSMUSG00000090212.1	Gm15647	ENSMUSG00000090212.1	ENSMUST00000160178.1	antisense	chr10:71082876-71083651
chr10	71147981	71148165	+	B2_Mm2	SINE	B2	chr10	71148159	71148161	+	ENSMUST00000217960.1,ENSMUSG00000112566.1	Gm32025	ENSMUSG00000112566.1	ENSMUST00000217960.1	processed_pseudogene	chr10:71148160-71148466
chr10	71181036	71181152	+	PB1D9	SINE	Alu	chr10	71181035	71181037	+	ENSMUST00000218730.1,ENSMUSG00000112028.1	1700113B09Rik	ENSMUSG00000112028.1	ENSMUST00000218730.1	lincRNA	chr10:71181036-71201144
chr10	71201622	71201888	+	RLTR15	LTR	ERVK	chr10	71201744	71201746	+	ENSMUST00000218350.1,ENSMUSG00000112028.1	1700113B09Rik	ENSMUSG00000112028.1	ENSMUST00000218350.1	lincRNA	chr10:71201745-71204487
chr10	71287617	71287760	+	B1_Mus2	SINE	Alu	chr10	71287728	71287730	+	ENSMUST00000218529.1,ENSMUSG00000112813.1	Gm34376	ENSMUSG00000112813.1	ENSMUST00000218529.1	lincRNA	chr10:71287729-71292483
chr10	71409102	71409529	+	MTC	LTR	ERVL-MaLR	chr10	71409362	71409364	+	ENSMUST00000145521.1,ENSMUSG00000060733.13	Ipmk	ENSMUSG00000060733.13	ENSMUST00000145521.1	protein_coding	chr10:71409363-71433327
chr10	72019044	72019225	-	ORR1C1	LTR	ERVL-MaLR	chr10	72019205	72019207	+	ENSMUST00000220117.1,ENSMUSG00000112185.1	Gm47060	ENSMUSG00000112185.1	ENSMUST00000220117.1	processed_pseudogene	chr10:72019206-72019517
chr10	72949446	72949934	-	RMER19C	LTR	ERVK	chr10	72949791	72949793	-	ENSMUST00000219415.1,ENSMUSG00000112168.1	Gm34776	ENSMUSG00000112168.1	ENSMUST00000219415.1	lincRNA	chr10:72940238-72949792
chr10	73326614	73327178	-	RLTR17	LTR	ERVK	chr10	73327026	73327028	-	ENSMUST00000147653.1,ENSMUSG00000085456.2	Gm15398	ENSMUSG00000085456.2	ENSMUST00000147653.1	lincRNA	chr10:73201399-73327027
chr10	73326614	73327178	-	RLTR17	LTR	ERVK	chr10	73327174	73327176	-	ENSMUST00000219998.1,ENSMUSG00000085456.2	Gm15398	ENSMUSG00000085456.2	ENSMUST00000219998.1	lincRNA	chr10:73282260-73327175
chr10	74631367	74631544	+	CT-rich	Low_complexity	Low_complexity	chr10	74631408	74631410	+	ENSMUST00000194729.1,ENSMUSG00000052613.16	Pcdh15	ENSMUSG00000052613.16	ENSMUST00000194729.1	protein_coding	chr10:74631409-74636680
chr10	74967148	74967184	+	GC_rich	Low_complexity	Low_complexity	chr10	74967176	74967178	+	ENSMUST00000037813.4,ENSMUSG00000040009.6	Gnaz	ENSMUSG00000040009.6	ENSMUST00000037813.4	protein_coding	chr10:74967177-75016907
chr10	75034331	75034535	+	B4	SINE	B4	chr10	75034344	75034346	+	ENSMUST00000220411.1,ENSMUSG00000112136.1	Gm40692	ENSMUSG00000112136.1	ENSMUST00000220411.1	processed_pseudogene	chr10:75034345-75035027
chr10	75229632	75230440	+	ORR1D-int	LTR	ERVL-MaLR	chr10	75229854	75229856	+	ENSMUST00000040105.7,ENSMUSG00000033444.14	Specc1l	ENSMUSG00000033444.14	ENSMUST00000040105.7	protein_coding	chr10:75229855-75312399
chr10	75260938	75261116	+	B2_Mm2	SINE	B2	chr10	75260966	75260968	+	ENSMUST00000219430.1,ENSMUSG00000033444.14	Specc1l	ENSMUSG00000033444.14	ENSMUST00000219430.1	protein_coding	chr10:75260967-75270358
chr10	75344420	75344507	+	MIR3	SINE	MIR	chr10	75344471	75344473	+	ENSMUST00000219564.1,ENSMUSG00000112471.1	Gm5779	ENSMUSG00000112471.1	ENSMUST00000219564.1	transcribed_processed_pseudogene	chr10:75344472-75353033
chr10	75399722	75401364	-	L1_Mur3	LINE	L1	chr10	75401114	75401116	+	ENSMUST00000219052.1,ENSMUSG00000033427.14	Upb1	ENSMUSG00000033427.14	ENSMUST00000219052.1	protein_coding	chr10:75401115-75424564
chr10	75442620	75442862	+	7SK	RNA	RNA	chr10	75442619	75442621	+	ENSMUST00000122673.1,ENSMUSG00000084622.1	Gm25545	ENSMUSG00000084622.1	ENSMUST00000122673.1	misc_RNA	chr10:75442620-75442942
chr10	75483359	75483572	+	MTC	LTR	ERVL-MaLR	chr10	75483391	75483393	-	ENSMUST00000218219.1,ENSMUSG00000112764.1	Gm48158	ENSMUSG00000112764.1	ENSMUST00000218219.1	processed_pseudogene	chr10:75483090-75483392
chr10	75668093	75668114	+	GC_rich	Low_complexity	Low_complexity	chr10	75668093	75668095	-	ENSMUST00000217664.1,ENSMUSG00000020196.10	Cabin1	ENSMUSG00000020196.10	ENSMUST00000217664.1	protein_coding	chr10:75657796-75668094
chr10	75700319	75700495	-	MER63B	DNA	hAT-Blackjack	chr10	75700374	75700376	-	ENSMUST00000218486.1,ENSMUSG00000020196.10	Cabin1	ENSMUSG00000020196.10	ENSMUST00000218486.1	protein_coding	chr10:75684375-75700375
chr10	75773406	75773457	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	75773413	75773415	-	ENSMUST00000001716.7,ENSMUSG00000001666.8	Ddt	ENSMUSG00000001666.8	ENSMUST00000001716.7	protein_coding	chr10:75771233-75773414
chr10	75777136	75777277	-	MamGypLTR1d	LTR	Gypsy	chr10	75777259	75777261	-	ENSMUST00000174649.1,ENSMUSG00000001665.11	Gstt3	ENSMUSG00000001665.11	ENSMUST00000174649.1	protein_coding	chr10:75774800-75777260
chr10	75914113	75914259	+	B1_Mus2	SINE	Alu	chr10	75914161	75914163	-	ENSMUST00000133189.7,ENSMUSG00000000902.13	Smarcb1	ENSMUSG00000000902.13	ENSMUST00000133189.7	protein_coding	chr10:75896773-75914162
chr10	76078482	76078828	+	ORR1A0	LTR	ERVL-MaLR	chr10	76078616	76078618	+	ENSMUST00000124320.1,ENSMUSG00000086798.1	Gm16222	ENSMUSG00000086798.1	ENSMUST00000124320.1	antisense	chr10:76078617-76080502
chr10	76345243	76345285	+	GC_rich	Low_complexity	Low_complexity	chr10	76345259	76345261	-	ENSMUST00000036033.13,ENSMUSG00000020231.15	Dip2a	ENSMUSG00000020231.15	ENSMUST00000036033.13	protein_coding	chr10:76263051-76345260
chr10	76367519	76367556	+	(TTTG)n	Simple_repeat	Simple_repeat	chr10	76367535	76367537	-	ENSMUST00000218747.1,ENSMUSG00000001151.10	Pcnt	ENSMUSG00000001151.10	ENSMUST00000218747.1	protein_coding	chr10:76356248-76367536
chr10	76413887	76414056	+	B4A	SINE	B4	chr10	76414031	76414033	-	ENSMUST00000219701.1,ENSMUSG00000001151.10	Pcnt	ENSMUSG00000001151.10	ENSMUST00000219701.1	protein_coding	chr10:76403758-76414032
chr10	76551140	76551260	+	RLTR17B_Mm	LTR	ERVK	chr10	76551209	76551211	+	ENSMUST00000162848.1,ENSMUSG00000033105.12	Lss	ENSMUSG00000033105.12	ENSMUST00000162848.1	protein_coding	chr10:76551210-76556618
chr10	77011451	77012218	-	L1MC3	LINE	L1	chr10	77011994	77011996	+	ENSMUST00000099552.2,ENSMUSG00000074919.2	Gm10787	ENSMUSG00000074919.2	ENSMUST00000099552.2	lincRNA	chr10:77011995-77022214
chr10	77029370	77029756	-	MTC	LTR	ERVL-MaLR	chr10	77029574	77029576	-	ENSMUST00000218177.1,ENSMUSG00000112773.1	Gm3137	ENSMUSG00000112773.1	ENSMUST00000218177.1	lincRNA	chr10:77011501-77029575
chr10	77089288	77089502	+	ORR1E	LTR	ERVL-MaLR	chr10	77089427	77089429	-	ENSMUST00000156009.1,ENSMUSG00000001435.15	Col18a1	ENSMUSG00000001435.15	ENSMUST00000156009.1	protein_coding	chr10:77080725-77089428
chr10	77370110	77370322	+	HAL1ME	LINE	L1	chr10	77370240	77370242	-	ENSMUST00000155117.1,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000155117.1	protein_coding	chr10:77325790-77370241
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418264	77418266	-	ENSMUST00000020496.13,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000020496.13	protein_coding	chr10:77290726-77418265
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418269	77418271	-	ENSMUST00000098374.8,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000098374.8	protein_coding	chr10:77290726-77418270
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418226	77418228	-	ENSMUST00000105404.8,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000105404.8	protein_coding	chr10:77290727-77418227
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418226	77418228	-	ENSMUST00000126073.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000126073.7	protein_coding	chr10:77290727-77418227
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418269	77418271	-	ENSMUST00000144547.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000144547.7	protein_coding	chr10:77290727-77418270
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418269	77418271	-	ENSMUST00000105406.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000105406.7	protein_coding	chr10:77290728-77418270
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418210	77418212	-	ENSMUST00000149738.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000149738.7	protein_coding	chr10:77316110-77418211
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418264	77418266	-	ENSMUST00000154607.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000154607.7	protein_coding	chr10:77316124-77418265
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418237	77418239	-	ENSMUST00000150227.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000150227.7	protein_coding	chr10:77322791-77418238
chr10	77418186	77418303	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	77418216	77418218	-	ENSMUST00000156583.7,ENSMUSG00000020262.15	Adarb1	ENSMUSG00000020262.15	ENSMUST00000156583.7	protein_coding	chr10:77325529-77418217
chr10	77592238	77592393	-	B1_Mur4	SINE	Alu	chr10	77592336	77592338	+	ENSMUST00000167006.1,ENSMUSG00000009291.13	Pttg1ip	ENSMUSG00000009291.13	ENSMUST00000167006.1	protein_coding	chr10:77592337-77597130
chr10	77615128	77615162	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr10	77615132	77615134	+	ENSMUST00000174295.1,ENSMUSG00000020265.16	Sumo3	ENSMUSG00000020265.16	ENSMUST00000174295.1	protein_coding	chr10:77615133-77616060
chr10	77931411	77931800	+	MER77	LTR	ERVL	chr10	77931778	77931780	-	ENSMUST00000140471.7,ENSMUSG00000009292.18	Trpm2	ENSMUSG00000009292.18	ENSMUST00000140471.7	protein_coding	chr10:77909303-77931779
chr10	77932840	77933032	+	B2_Mm1a	SINE	B2	chr10	77933030	77933032	-	ENSMUST00000153842.8,ENSMUSG00000009292.18	Trpm2	ENSMUSG00000009292.18	ENSMUST00000153842.8	protein_coding	chr10:77909361-77933031
chr10	77967451	77967468	+	B4	SINE	B4	chr10	77967456	77967458	-	ENSMUST00000105400.8,ENSMUSG00000009292.18	Trpm2	ENSMUSG00000009292.18	ENSMUST00000105400.8	protein_coding	chr10:77909165-77967457
chr10	77978673	77978694	+	GC_rich	Low_complexity	Low_complexity	chr10	77978672	77978674	+	ENSMUST00000105398.1,ENSMUSG00000020284.16	1810043G02Rik	ENSMUSG00000020284.16	ENSMUST00000105398.1	protein_coding	chr10:77978673-77986905
chr10	77978673	77978694	+	GC_rich	Low_complexity	Low_complexity	chr10	77978680	77978682	+	ENSMUST00000136275.1,ENSMUSG00000020284.16	1810043G02Rik	ENSMUSG00000020284.16	ENSMUST00000136275.1	protein_coding	chr10:77978681-77985436
chr10	77978673	77978694	+	GC_rich	Low_complexity	Low_complexity	chr10	77978692	77978694	+	ENSMUST00000130949.1,ENSMUSG00000020284.16	1810043G02Rik	ENSMUSG00000020284.16	ENSMUST00000130949.1	protein_coding	chr10:77978693-77980522
chr10	78038204	78038349	+	RMER20A	LTR	ERVK	chr10	78038257	78038259	-	ENSMUST00000143548.7,ENSMUSG00000000731.15	Aire	ENSMUSG00000000731.15	ENSMUST00000143548.7	protein_coding	chr10:78030023-78038258
chr10	78038204	78038349	+	RMER20A	LTR	ERVK	chr10	78038259	78038261	-	ENSMUST00000143452.1,ENSMUSG00000000731.15	Aire	ENSMUSG00000000731.15	ENSMUST00000143452.1	protein_coding	chr10:78031855-78038260
chr10	78073264	78073435	-	B3	SINE	B2	chr10	78073338	78073340	+	ENSMUST00000219633.1,ENSMUSG00000000732.9	Icosl	ENSMUSG00000000732.9	ENSMUST00000219633.1	protein_coding	chr10:78073339-78079525
chr10	78244517	78244636	+	GC_rich	Low_complexity	Low_complexity	chr10	78244621	78244623	-	ENSMUST00000217980.1,ENSMUSG00000000374.8	Trappc10	ENSMUSG00000000374.8	ENSMUST00000217980.1	protein_coding	chr10:78217187-78244622
chr10	78264021	78264476	+	L1Md_T	LINE	L1	chr10	78264138	78264140	-	ENSMUST00000218662.1,ENSMUSG00000112433.1	Gm30122	ENSMUSG00000112433.1	ENSMUST00000218662.1	lincRNA	chr10:78248880-78264139
chr10	78264021	78264476	+	L1Md_T	LINE	L1	chr10	78264138	78264140	-	ENSMUST00000218143.1,ENSMUSG00000112433.1	Gm30122	ENSMUSG00000112433.1	ENSMUST00000218143.1	lincRNA	chr10:78248880-78264139
chr10	78265999	78266170	-	B2_Mm2	SINE	B2	chr10	78266074	78266076	-	ENSMUST00000218207.1,ENSMUSG00000112300.1	Gm47976	ENSMUSG00000112300.1	ENSMUST00000218207.1	TEC	chr10:78264531-78266075
chr10	78314164	78314283	+	5S	rRNA	rRNA	chr10	78314164	78314166	+	ENSMUST00000083757.1,ENSMUSG00000065691.1	n-R5s77	ENSMUSG00000065691.1	ENSMUST00000083757.1	rRNA	chr10:78314165-78314283
chr10	78340124	78340329	+	MLT1F2	LTR	ERVL-MaLR	chr10	78340206	78340208	-	ENSMUST00000184079.1,ENSMUSG00000098885.1	Mir7659	ENSMUSG00000098885.1	ENSMUST00000184079.1	miRNA	chr10:78340150-78340207
chr10	78370320	78370636	+	MTB_Mm	LTR	ERVL-MaLR	chr10	78370319	78370321	-	ENSMUST00000122547.1,ENSMUSG00000084496.1	Gm22514	ENSMUSG00000084496.1	ENSMUST00000122547.1	misc_RNA	chr10:78370013-78370320
chr10	78405724	78405871	+	B1_Mm	SINE	Alu	chr10	78405737	78405739	-	ENSMUST00000218962.1,ENSMUSG00000061032.9	Rrp1	ENSMUSG00000061032.9	ENSMUST00000218962.1	protein_coding	chr10:78404925-78405738
chr10	78518622	78518739	+	5S	rRNA	rRNA	chr10	78518622	78518624	+	ENSMUST00000158908.1,ENSMUSG00000089533.1	Gm25164	ENSMUSG00000089533.1	ENSMUST00000158908.1	rRNA	chr10:78518623-78518738
chr10	78525768	78526390	-	RLTR26B_MM	LTR	ERVK	chr10	78525988	78525990	+	ENSMUST00000184078.1,ENSMUSG00000099247.1	Gm27541	ENSMUSG00000099247.1	ENSMUST00000184078.1	miRNA	chr10:78525989-78526110
chr10	78591893	78591974	+	GC_rich	Low_complexity	Low_complexity	chr10	78591963	78591965	-	ENSMUST00000040580.6,ENSMUSG00000032714.6	Syde1	ENSMUSG00000032714.6	ENSMUST00000040580.6	protein_coding	chr10:78584503-78591964
chr10	78630211	78630318	-	L1Md_F2	LINE	L1	chr10	78630299	78630301	-	ENSMUST00000217691.1,ENSMUSG00000112017.1	Gm7842	ENSMUSG00000112017.1	ENSMUST00000217691.1	processed_pseudogene	chr10:78628922-78630300
chr10	78694301	78699944	-	L1Md_F2	LINE	L1	chr10	78698807	78698809	-	ENSMUST00000219160.1,ENSMUSG00000112689.1	Gm47476	ENSMUSG00000112689.1	ENSMUST00000219160.1	processed_pseudogene	chr10:78694971-78698808
chr10	78694301	78699944	-	L1Md_F2	LINE	L1	chr10	78699608	78699610	+	ENSMUST00000219903.1,ENSMUSG00000111946.1	Gm47495	ENSMUSG00000111946.1	ENSMUST00000219903.1	processed_pseudogene	chr10:78699609-78699873
chr10	79417682	79418028	-	IAPLTR4	LTR	ERVK	chr10	79417904	79417906	-	ENSMUST00000217947.1,ENSMUSG00000112907.1	Gm47015	ENSMUSG00000112907.1	ENSMUST00000217947.1	lincRNA	chr10:79412962-79417905
chr10	79554769	79554900	+	C-rich	Low_complexity	Low_complexity	chr10	79554883	79554885	-	ENSMUST00000164895.7,ENSMUSG00000042570.14	Mier2	ENSMUSG00000042570.14	ENSMUST00000164895.7	protein_coding	chr10:79548874-79554884
chr10	79587264	79587344	-	PB1	SINE	Alu	chr10	79587330	79587332	-	ENSMUST00000020566.6,ENSMUSG00000020317.14	Theg	ENSMUSG00000020317.14	ENSMUST00000020566.6	protein_coding	chr10:79576477-79587331
chr10	79682192	79682213	+	GC_rich	Low_complexity	Low_complexity	chr10	79682194	79682196	+	ENSMUST00000020550.12,ENSMUSG00000020307.15	Cdc34	ENSMUSG00000020307.15	ENSMUST00000020550.12	protein_coding	chr10:79682195-79688398
chr10	79682352	79682407	+	GC_rich	Low_complexity	Low_complexity	chr10	79682403	79682405	+	ENSMUST00000219791.1,ENSMUSG00000020307.15	Cdc34	ENSMUSG00000020307.15	ENSMUST00000219791.1	protein_coding	chr10:79682404-79688275
chr10	79703486	79703590	-	U6	snRNA	snRNA	chr10	79703589	79703591	-	ENSMUST00000083286.1,ENSMUSG00000065220.1	Gm25794	ENSMUSG00000065220.1	ENSMUST00000083286.1	snRNA	chr10:79703484-79703590
chr10	79716614	79716637	+	GC_rich	Low_complexity	Low_complexity	chr10	79716633	79716635	+	ENSMUST00000099513.7,ENSMUSG00000020331.9	Hcn2	ENSMUSG00000020331.9	ENSMUST00000099513.7	protein_coding	chr10:79716634-79736108
chr10	79716614	79716637	+	GC_rich	Low_complexity	Low_complexity	chr10	79716633	79716635	+	ENSMUST00000020581.2,ENSMUSG00000020331.9	Hcn2	ENSMUSG00000020331.9	ENSMUST00000020581.2	protein_coding	chr10:79716634-79736108
chr10	79793638	79793681	+	GC_rich	Low_complexity	Low_complexity	chr10	79793666	79793668	+	ENSMUST00000218631.1,ENSMUSG00000035863.14	Palm	ENSMUSG00000035863.14	ENSMUST00000218631.1	protein_coding	chr10:79793667-79817398
chr10	79909194	79909300	+	U6	snRNA	snRNA	chr10	79909194	79909196	+	ENSMUST00000178620.1,ENSMUSG00000095023.1	Gm24019	ENSMUSG00000095023.1	ENSMUST00000178620.1	snRNA	chr10:79909195-79909301
chr10	79927311	79927342	+	GC_rich	Low_complexity	Low_complexity	chr10	79927340	79927342	+	ENSMUST00000105376.1,ENSMUSG00000019564.12	Arid3a	ENSMUSG00000019564.12	ENSMUST00000105376.1	protein_coding	chr10:79927341-79954703
chr10	79985505	79985611	+	U6	snRNA	snRNA	chr10	79985505	79985507	+	ENSMUST00000179260.1,ENSMUSG00000095615.1	Gm26243	ENSMUSG00000095615.1	ENSMUST00000179260.1	snRNA	chr10:79985506-79985612
chr10	80021701	80021744	+	(GGGTG)n	Simple_repeat	Simple_repeat	chr10	80021742	80021744	+	ENSMUST00000150022.1,ENSMUSG00000035697.14	Arhgap45	ENSMUSG00000035697.14	ENSMUST00000150022.1	protein_coding	chr10:80021743-80031462
chr10	80150427	80150465	+	GC_rich	Low_complexity	Low_complexity	chr10	80150456	80150458	+	ENSMUST00000153477.7,ENSMUSG00000035621.13	Midn	ENSMUSG00000035621.13	ENSMUST00000153477.7	protein_coding	chr10:80150457-80153868
chr10	80241506	80241653	+	B1_Mm	SINE	Alu	chr10	80241537	80241539	+	ENSMUST00000126917.7,ENSMUSG00000020156.16	Mum1	ENSMUSG00000020156.16	ENSMUST00000126917.7	protein_coding	chr10:80241538-80243900
chr10	80253228	80253411	-	B2_Mm1a	SINE	B2	chr10	80253314	80253316	+	ENSMUST00000155336.1,ENSMUSG00000020153.14	Ndufs7	ENSMUSG00000020153.14	ENSMUST00000155336.1	protein_coding	chr10:80253315-80255140
chr10	80264926	80265014	+	GC_rich	Low_complexity	Low_complexity	chr10	80264983	80264985	+	ENSMUST00000105362.7,ENSMUSG00000069565.12	Dazap1	ENSMUSG00000069565.12	ENSMUST00000105362.7	protein_coding	chr10:80264984-80288408
chr10	80280278	80280431	-	L1MEd	LINE	L1	chr10	80280422	80280424	+	ENSMUST00000138032.7,ENSMUSG00000069565.12	Dazap1	ENSMUSG00000069565.12	ENSMUST00000138032.7	protein_coding	chr10:80280423-80285435
chr10	80329451	80329476	+	GC_rich	Low_complexity	Low_complexity	chr10	80329452	80329454	-	ENSMUST00000137177.7,ENSMUSG00000020131.14	Pcsk4	ENSMUSG00000020131.14	ENSMUST00000137177.7	protein_coding	chr10:80321283-80329453
chr10	80329451	80329476	+	GC_rich	Low_complexity	Low_complexity	chr10	80329454	80329456	-	ENSMUST00000128653.7,ENSMUSG00000020131.14	Pcsk4	ENSMUSG00000020131.14	ENSMUST00000128653.7	protein_coding	chr10:80321283-80329455
chr10	80330078	80330149	+	G-rich	Low_complexity	Low_complexity	chr10	80330144	80330146	+	ENSMUST00000186864.6,ENSMUSG00000035504.16	Reep6	ENSMUSG00000035504.16	ENSMUST00000186864.6	protein_coding	chr10:80330145-80336440
chr10	80346002	80346154	-	B3A	SINE	B2	chr10	80346118	80346120	-	ENSMUST00000128845.7,ENSMUSG00000043822.18	Adamtsl5	ENSMUSG00000043822.18	ENSMUST00000128845.7	protein_coding	chr10:80339821-80346119
chr10	80387653	80387702	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr10	80387658	80387660	-	ENSMUST00000105350.2,ENSMUSG00000048696.11	Mex3d	ENSMUSG00000048696.11	ENSMUST00000105350.2	protein_coding	chr10:80380355-80387659
chr10	80416076	80416340	-	MT2B	LTR	ERVL	chr10	80416287	80416289	-	ENSMUST00000127931.1,ENSMUSG00000020167.14	Tcf3	ENSMUSG00000020167.14	ENSMUST00000127931.1	protein_coding	chr10:80415243-80416288
chr10	80416230	80416341	-	B1F2	SINE	Alu	chr10	80416287	80416289	-	ENSMUST00000127931.1,ENSMUSG00000020167.14	Tcf3	ENSMUSG00000020167.14	ENSMUST00000127931.1	protein_coding	chr10:80415243-80416288
chr10	80433638	80433671	+	GC_rich	Low_complexity	Low_complexity	chr10	80433646	80433648	-	ENSMUST00000105345.9,ENSMUSG00000020167.14	Tcf3	ENSMUSG00000020167.14	ENSMUST00000105345.9	protein_coding	chr10:80409514-80433647
chr10	80433638	80433671	+	GC_rich	Low_complexity	Low_complexity	chr10	80433642	80433644	-	ENSMUST00000105342.7,ENSMUSG00000020167.14	Tcf3	ENSMUSG00000020167.14	ENSMUST00000105342.7	protein_coding	chr10:80409547-80433643
chr10	80433638	80433671	+	GC_rich	Low_complexity	Low_complexity	chr10	80433646	80433648	-	ENSMUST00000105343.7,ENSMUSG00000020167.14	Tcf3	ENSMUSG00000020167.14	ENSMUST00000105343.7	protein_coding	chr10:80409547-80433647
chr10	80476351	80476452	+	U6	snRNA	snRNA	chr10	80476351	80476353	+	ENSMUST00000158603.1,ENSMUSG00000089228.1	Gm25044	ENSMUSG00000089228.1	ENSMUST00000158603.1	snRNA	chr10:80476352-80476455
chr10	80494826	80494860	+	GC_rich	Low_complexity	Low_complexity	chr10	80494834	80494836	+	ENSMUST00000051773.8,ENSMUSG00000045518.8	Onecut3	ENSMUSG00000045518.8	ENSMUST00000051773.8	protein_coding	chr10:80494835-80517276
chr10	80508723	80508881	+	(TGGA)n	Simple_repeat	Simple_repeat	chr10	80508768	80508770	+	ENSMUST00000194078.1,ENSMUSG00000104429.1	2610034O05Rik	ENSMUSG00000104429.1	ENSMUST00000194078.1	TEC	chr10:80508769-80509623
chr10	80605883	80606047	-	ID_B1	SINE	B4	chr10	80606020	80606022	+	ENSMUST00000178231.1,ENSMUSG00000035370.9	Gm49322	ENSMUSG00000035370.9	ENSMUST00000178231.1	protein_coding	chr10:80606021-80615783
chr10	80605883	80606047	-	ID_B1	SINE	B4	chr10	80606020	80606022	+	ENSMUST00000218067.1,ENSMUSG00000035370.9	Gm49322	ENSMUSG00000035370.9	ENSMUST00000218067.1	protein_coding	chr10:80606021-80615784
chr10	80622834	80622895	+	G-rich	Low_complexity	Low_complexity	chr10	80622837	80622839	+	ENSMUST00000079773.13,ENSMUSG00000003345.16	Csnk1g2	ENSMUSG00000003345.16	ENSMUST00000079773.13	protein_coding	chr10:80622838-80640741
chr10	80636141	80636347	-	B3	SINE	B2	chr10	80636164	80636166	+	ENSMUST00000217902.1,ENSMUSG00000003345.16	Csnk1g2	ENSMUSG00000003345.16	ENSMUST00000217902.1	protein_coding	chr10:80636165-80640749
chr10	80676290	80676314	+	GC_rich	Low_complexity	Low_complexity	chr10	80676292	80676294	-	ENSMUST00000200082.4,ENSMUSG00000020190.13	Mknk2	ENSMUSG00000020190.13	ENSMUST00000200082.4	protein_coding	chr10:80665327-80676293
chr10	80681661	80681847	+	B2_Mm2	SINE	B2	chr10	80681837	80681839	+	ENSMUST00000181866.1,ENSMUSG00000097889.1	Gm26541	ENSMUSG00000097889.1	ENSMUST00000181866.1	lincRNA	chr10:80681838-80687176
chr10	80702391	80702536	-	B1_Mus2	SINE	Alu	chr10	80702425	80702427	+	ENSMUST00000218184.1,ENSMUSG00000055862.7	Izumo4	ENSMUSG00000055862.7	ENSMUST00000218184.1	protein_coding	chr10:80702426-80705373
chr10	80710742	80710817	+	CT-rich	Low_complexity	Low_complexity	chr10	80710789	80710791	-	ENSMUST00000218610.1,ENSMUSG00000020198.8	Ap3d1	ENSMUSG00000020198.8	ENSMUST00000218610.1	protein_coding	chr10:80708802-80710790
chr10	80720142	80720287	+	B1_Mus2	SINE	Alu	chr10	80720159	80720161	-	ENSMUST00000219253.1,ENSMUSG00000020198.8	Ap3d1	ENSMUSG00000020198.8	ENSMUST00000219253.1	protein_coding	chr10:80719215-80720160
chr10	80768805	80769284	-	MT2C_Mm	LTR	ERVL	chr10	80768986	80768988	-	ENSMUST00000105760.2,ENSMUSG00000075558.3	Gm17151	ENSMUSG00000075558.3	ENSMUST00000105760.2	antisense	chr10:80766859-80768987
chr10	80797860	80797899	+	GC_rich	Low_complexity	Low_complexity	chr10	80797887	80797889	-	ENSMUST00000218036.1,ENSMUSG00000035278.9	Plekhj1	ENSMUSG00000035278.9	ENSMUST00000218036.1	protein_coding	chr10:80796099-80797888
chr10	80811843	80812006	+	ID_B1	SINE	B4	chr10	80811884	80811886	-	ENSMUST00000020435.10,ENSMUSG00000020216.13	Jsrp1	ENSMUSG00000020216.13	ENSMUST00000020435.10	protein_coding	chr10:80808496-80811885
chr10	81025396	81025442	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr10	81025408	81025410	-	ENSMUST00000055125.4,ENSMUSG00000043670.4	Diras1	ENSMUSG00000043670.4	ENSMUST00000055125.4	protein_coding	chr10:81019589-81025409
chr10	81104673	81104830	+	B2_Mm2	SINE	B2	chr10	81104672	81104674	-	ENSMUST00000198896.1,ENSMUSG00000106347.1	Mir5615-1	ENSMUSG00000106347.1	ENSMUST00000198896.1	miRNA	chr10:81104614-81104673
chr10	81118600	81118665	+	A-rich	Low_complexity	Low_complexity	chr10	81118611	81118613	+	ENSMUST00000123888.1,ENSMUSG00000035027.18	Map2k2	ENSMUSG00000035027.18	ENSMUST00000123888.1	protein_coding	chr10:81118612-81119327
chr10	81137947	81137983	+	GC_rich	Low_complexity	Low_complexity	chr10	81137952	81137954	+	ENSMUST00000117956.1,ENSMUSG00000035011.15	Zbtb7a	ENSMUSG00000035011.15	ENSMUST00000117956.1	protein_coding	chr10:81137953-81148458
chr10	81191386	81191682	-	MTC	LTR	ERVL-MaLR	chr10	81191555	81191557	+	ENSMUST00000219944.1,ENSMUSG00000034974.13	Dapk3	ENSMUSG00000034974.13	ENSMUST00000219944.1	protein_coding	chr10:81191556-81192653
chr10	81258175	81258238	+	MIR3	SINE	MIR	chr10	81258214	81258216	+	ENSMUST00000151660.7,ENSMUSG00000004933.17	Matk	ENSMUSG00000004933.17	ENSMUST00000151660.7	protein_coding	chr10:81258215-81262913
chr10	81291468	81291640	-	ZP3AR	Satellite	Satellite	chr10	81291580	81291582	-	ENSMUST00000219479.1,ENSMUSG00000034917.8	Tjp3	ENSMUSG00000034917.8	ENSMUST00000219479.1	protein_coding	chr10:81273228-81291581
chr10	81350350	81350387	+	GC_rich	Low_complexity	Low_complexity	chr10	81350368	81350370	-	ENSMUST00000132313.1,ENSMUSG00000020232.17	Hmg20b	ENSMUSG00000020232.17	ENSMUST00000132313.1	protein_coding	chr10:81346051-81350369
chr10	81378459	81378494	+	GC_rich	Low_complexity	Low_complexity	chr10	81378462	81378464	-	ENSMUST00000138343.1,ENSMUSG00000020235.16	Fzr1	ENSMUSG00000020235.16	ENSMUST00000138343.1	protein_coding	chr10:81367372-81378463
chr10	81385547	81385624	+	B1_Mur4	SINE	Alu	chr10	81385620	81385622	+	ENSMUST00000121047.1,ENSMUSG00000078440.10	Dohh	ENSMUSG00000078440.10	ENSMUST00000121047.1	protein_coding	chr10:81385621-81387681
chr10	81385609	81385680	-	PB1D7	SINE	Alu	chr10	81385620	81385622	+	ENSMUST00000121047.1,ENSMUSG00000078440.10	Dohh	ENSMUSG00000078440.10	ENSMUST00000121047.1	protein_coding	chr10:81385621-81387681
chr10	81388978	81389053	-	B3	SINE	B2	chr10	81389004	81389006	+	ENSMUST00000125635.1,ENSMUSG00000114004.1	Gm48552	ENSMUSG00000114004.1	ENSMUST00000125635.1	protein_coding	chr10:81389005-81391267
chr10	81416258	81416316	-	PB1D7	SINE	Alu	chr10	81416296	81416298	-	ENSMUST00000199973.1,ENSMUSG00000105379.1	Mir1191b	ENSMUSG00000105379.1	ENSMUST00000199973.1	miRNA	chr10:81416240-81416297
chr10	81427177	81427257	+	C-rich	Low_complexity	Low_complexity	chr10	81427186	81427188	-	ENSMUST00000105321.9,ENSMUSG00000055053.18	Nfic	ENSMUSG00000055053.18	ENSMUST00000105321.9	protein_coding	chr10:81396186-81427187
chr10	81473375	81473431	+	C-rich	Low_complexity	Low_complexity	chr10	81473377	81473379	-	ENSMUST00000141207.7,ENSMUSG00000034818.16	Celf5	ENSMUSG00000034818.16	ENSMUST00000141207.7	protein_coding	chr10:81467507-81473378
chr10	81500038	81500143	+	B1_Mus2	SINE	Alu	chr10	81500131	81500133	-	ENSMUST00000053646.6,ENSMUSG00000044199.6	S1pr4	ENSMUSG00000044199.6	ENSMUST00000053646.6	protein_coding	chr10:81497747-81500132
chr10	81531983	81532112	+	B1_Mus1	SINE	Alu	chr10	81532014	81532016	-	ENSMUST00000146984.1,ENSMUSG00000034781.5	Gna11	ENSMUSG00000034781.5	ENSMUST00000146984.1	protein_coding	chr10:81530287-81532015
chr10	81563560	81563663	+	MIR3	SINE	MIR	chr10	81563621	81563623	+	ENSMUST00000218690.1,ENSMUSG00000054452.10	Aes	ENSMUSG00000054452.10	ENSMUST00000218690.1	protein_coding	chr10:81563622-81566360
chr10	81574519	81574717	+	ZP3AR	Satellite	Satellite	chr10	81574560	81574562	+	ENSMUST00000140433.7,ENSMUSG00000034771.15	Tle2	ENSMUSG00000034771.15	ENSMUST00000140433.7	protein_coding	chr10:81574561-81590466
chr10	81606834	81607362	-	ORR1B1-int	LTR	ERVL-MaLR	chr10	81606882	81606884	+	ENSMUST00000119753.7,ENSMUSG00000074862.11	BC025920	ENSMUSG00000074862.11	ENSMUST00000119753.7	protein_coding	chr10:81606883-81609545
chr10	81606834	81607362	-	ORR1B1-int	LTR	ERVL-MaLR	chr10	81606882	81606884	+	ENSMUST00000121138.1,ENSMUSG00000074862.11	BC025920	ENSMUSG00000074862.11	ENSMUST00000121138.1	protein_coding	chr10:81606883-81609545
chr10	81606834	81607362	-	ORR1B1-int	LTR	ERVL-MaLR	chr10	81607024	81607026	+	ENSMUST00000099442.3,ENSMUSG00000074862.11	BC025920	ENSMUSG00000074862.11	ENSMUST00000099442.3	protein_coding	chr10:81607025-81609809
chr10	81646614	81646674	+	C-rich	Low_complexity	Low_complexity	chr10	81646631	81646633	+	ENSMUST00000142390.1,ENSMUSG00000054708.17	Ankrd24	ENSMUSG00000054708.17	ENSMUST00000142390.1	protein_coding	chr10:81646632-81647161
chr10	81661676	81664196	+	MurSatRep1	Unknown	Unknown	chr10	81661997	81661999	+	ENSMUST00000105315.2,ENSMUSG00000096856.7	Gm10778	ENSMUSG00000096856.7	ENSMUST00000105315.2	protein_coding	chr10:81661998-81664231
chr10	81718597	81720681	+	MurSatRep1	Unknown	Unknown	chr10	81718918	81718920	+	ENSMUST00000085664.5,ENSMUSG00000096795.4	Zfp433	ENSMUSG00000096795.4	ENSMUST00000085664.5	protein_coding	chr10:81718919-81721468
chr10	81746005	81747778	-	MurSatRep1	Unknown	Unknown	chr10	81747502	81747504	-	ENSMUST00000105316.2,ENSMUSG00000094622.2	Gm3055	ENSMUSG00000094622.2	ENSMUST00000105316.2	protein_coding	chr10:81745983-81747503
chr10	81820804	81822534	+	MurSatRep1	Unknown	Unknown	chr10	81821126	81821128	+	ENSMUST00000099439.3,ENSMUSG00000094076.7	Gm4767	ENSMUSG00000094076.7	ENSMUST00000099439.3	protein_coding	chr10:81821127-81823360
chr10	81910649	81910986	-	L1Md_A	LINE	L1	chr10	81910898	81910900	-	ENSMUST00000076281.5,ENSMUSG00000096718.2	Zfp781	ENSMUSG00000096718.2	ENSMUST00000076281.5	protein_coding	chr10:81905073-81910899
chr10	82008155	82008380	+	ORR1E-int	LTR	ERVL-MaLR	chr10	82008378	82008380	+	ENSMUST00000218202.1,ENSMUSG00000111985.1	Gm8290	ENSMUSG00000111985.1	ENSMUST00000218202.1	processed_pseudogene	chr10:82008379-82008855
chr10	82058038	82058945	+	MurSatRep1	Unknown	Unknown	chr10	82058416	82058418	+	ENSMUST00000105313.1,ENSMUSG00000061371.7	Zfp873	ENSMUSG00000061371.7	ENSMUST00000105313.1	protein_coding	chr10:82058417-82061329
chr10	82059094	82060500	+	MurSatRep1	Unknown	Unknown	chr10	82059259	82059261	+	ENSMUST00000211338.1,ENSMUSG00000061371.7	Zfp873	ENSMUSG00000061371.7	ENSMUST00000211338.1	protein_coding	chr10:82059260-82061584
chr10	82059094	82060500	+	MurSatRep1	Unknown	Unknown	chr10	82060258	82060260	+	ENSMUST00000209614.1,ENSMUSG00000061371.7	Zfp873	ENSMUSG00000061371.7	ENSMUST00000209614.1	protein_coding	chr10:82060259-82064745
chr10	82138009	82138535	+	MurSatRep1	Unknown	Unknown	chr10	82138252	82138254	+	ENSMUST00000105314.2,ENSMUSG00000078435.5	AU041133	ENSMUSG00000078435.5	ENSMUST00000105314.2	protein_coding	chr10:82138253-82152011
chr10	82156596	82157533	+	MurERV4-int	LTR	ERVK	chr10	82157100	82157102	+	ENSMUST00000219013.1,ENSMUSG00000112922.1	Gm47572	ENSMUSG00000112922.1	ENSMUST00000219013.1	TEC	chr10:82157101-82160461
chr10	82378463	82378633	+	MurSatRep1	Unknown	Unknown	chr10	82378592	82378594	+	ENSMUST00000165906.1,ENSMUSG00000073427.4	Gm4924	ENSMUSG00000073427.4	ENSMUST00000165906.1	protein_coding	chr10:82378593-82381237
chr10	82430513	82430714	+	RLTR14	LTR	ERV1	chr10	82430703	82430705	+	ENSMUST00000219737.1,ENSMUSG00000112163.1	Gm8188	ENSMUSG00000112163.1	ENSMUST00000219737.1	processed_pseudogene	chr10:82430704-82432393
chr10	82653121	82653256	-	ID_B1	SINE	B4	chr10	82653198	82653200	-	ENSMUST00000128142.1,ENSMUSG00000020251.13	Glt8d2	ENSMUSG00000020251.13	ENSMUST00000128142.1	protein_coding	chr10:82651308-82653199
chr10	82771320	82771504	+	ORR1B1	LTR	ERVL-MaLR	chr10	82771320	82771322	+	ENSMUST00000219360.1,ENSMUSG00000112286.1	Gm47561	ENSMUSG00000112286.1	ENSMUST00000219360.1	lincRNA	chr10:82771321-82777781
chr10	82852559	82852702	-	B1_Mur1	SINE	Alu	chr10	82852646	82852648	-	ENSMUST00000220118.1,ENSMUSG00000112889.1	Gm47073	ENSMUSG00000112889.1	ENSMUST00000220118.1	TEC	chr10:82851255-82852647
chr10	82886751	82886902	-	B1_Mur4	SINE	Alu	chr10	82886845	82886847	+	ENSMUST00000218724.1,ENSMUSG00000020250.10	Txnrd1	ENSMUSG00000020250.10	ENSMUST00000218724.1	protein_coding	chr10:82886846-82896312
chr10	82886789	82886920	-	B4	SINE	B4	chr10	82886845	82886847	+	ENSMUST00000218724.1,ENSMUSG00000020250.10	Txnrd1	ENSMUSG00000020250.10	ENSMUST00000218724.1	protein_coding	chr10:82886846-82896312
chr10	83031562	83031832	+	Cheshire	DNA	hAT-Charlie	chr10	83031694	83031696	-	ENSMUST00000218071.1,ENSMUSG00000112084.1	Gm10773	ENSMUSG00000112084.1	ENSMUST00000218071.1	TEC	chr10:83027761-83031695
chr10	83322834	83323079	-	MTEb	LTR	ERVL-MaLR	chr10	83322882	83322884	-	ENSMUST00000154926.1,ENSMUSG00000034591.5	Slc41a2	ENSMUSG00000034591.5	ENSMUST00000154926.1	protein_coding	chr10:83316215-83322883
chr10	83344458	83345366	-	RLTR19-int	LTR	ERVK	chr10	83344512	83344514	+	ENSMUST00000219407.1,ENSMUSG00000112134.1	Gm40723	ENSMUSG00000112134.1	ENSMUST00000219407.1	lincRNA	chr10:83344513-83351079
chr10	83603275	83603956	+	L1_Mus1	LINE	L1	chr10	83603383	83603385	-	ENSMUST00000141048.1,ENSMUSG00000020263.14	Appl2	ENSMUSG00000020263.14	ENSMUST00000141048.1	protein_coding	chr10:83601904-83603384
chr10	83611244	83611293	+	(CA)n	Simple_repeat	Simple_repeat	chr10	83611267	83611269	-	ENSMUST00000148096.7,ENSMUSG00000020263.14	Appl2	ENSMUSG00000020263.14	ENSMUST00000148096.7	protein_coding	chr10:83602871-83611268
chr10	83611687	83611737	+	MIR3	SINE	MIR	chr10	83611727	83611729	-	ENSMUST00000150351.1,ENSMUSG00000020263.14	Appl2	ENSMUSG00000020263.14	ENSMUST00000150351.1	protein_coding	chr10:83605765-83611728
chr10	84004536	84004999	+	L1MA6	LINE	L1	chr10	84004859	84004861	-	ENSMUST00000215772.1,ENSMUSG00000111699.1	C230099D08Rik	ENSMUSG00000111699.1	ENSMUST00000215772.1	lincRNA	chr10:83992728-84004860
chr10	84100576	84100764	+	MER5A	DNA	hAT-Charlie	chr10	84100696	84100698	-	ENSMUST00000216477.1,ENSMUSG00000111049.1	Gm34184	ENSMUSG00000111049.1	ENSMUST00000216477.1	lincRNA	chr10:84036560-84100697
chr10	84221988	84222314	+	RLTR51B_Mm	LTR	ERVK?	chr10	84222056	84222058	-	ENSMUST00000216890.1,ENSMUSG00000111062.1	Gm47253	ENSMUSG00000111062.1	ENSMUST00000216890.1	lincRNA	chr10:84191820-84222057
chr10	84487900	84488727	+	RMER21B	LTR	ERV1	chr10	84488292	84488294	+	ENSMUST00000020222.1,ENSMUSG00000020033.2	4930463O16Rik	ENSMUSG00000020033.2	ENSMUST00000020222.1	lincRNA	chr10:84488293-84497435
chr10	84534039	84534067	+	GC_rich	Low_complexity	Low_complexity	chr10	84534061	84534063	-	ENSMUST00000053871.4,ENSMUSG00000046841.5	Ckap4	ENSMUSG00000046841.5	ENSMUST00000053871.4	protein_coding	chr10:84526305-84534062
chr10	84553232	84553634	+	Lx8	LINE	L1	chr10	84553337	84553339	-	ENSMUST00000181466.1,ENSMUSG00000097076.1	Platr7	ENSMUSG00000097076.1	ENSMUST00000181466.1	lincRNA	chr10:84547417-84553338
chr10	84838117	84838297	+	L3	LINE	CR1	chr10	84838147	84838149	+	ENSMUST00000020226.3,ENSMUSG00000020037.15	Rfx4	ENSMUSG00000020037.15	ENSMUST00000020226.3	protein_coding	chr10:84838148-84872502
chr10	84838117	84838297	+	L3	LINE	CR1	chr10	84838147	84838149	+	ENSMUST00000095388.4,ENSMUSG00000020037.15	Rfx4	ENSMUSG00000020037.15	ENSMUST00000095388.4	protein_coding	chr10:84838148-84906538
chr10	84917612	84917661	+	G-rich	Low_complexity	Low_complexity	chr10	84917615	84917617	+	ENSMUST00000038523.14,ENSMUSG00000035620.15	Ric8b	ENSMUSG00000035620.15	ENSMUST00000038523.14	protein_coding	chr10:84917616-85016447
chr10	84917612	84917661	+	G-rich	Low_complexity	Low_complexity	chr10	84917653	84917655	+	ENSMUST00000214693.1,ENSMUSG00000035620.15	Ric8b	ENSMUSG00000035620.15	ENSMUST00000214693.1	protein_coding	chr10:84917654-84992168
chr10	84917612	84917661	+	G-rich	Low_complexity	Low_complexity	chr10	84917655	84917657	+	ENSMUST00000095385.4,ENSMUSG00000035620.15	Ric8b	ENSMUSG00000035620.15	ENSMUST00000095385.4	protein_coding	chr10:84917656-85016447
chr10	85102664	85102772	+	G-rich	Low_complexity	Low_complexity	chr10	85102742	85102744	+	ENSMUST00000216771.1,ENSMUSG00000060935.6	Tmem263	ENSMUSG00000060935.6	ENSMUST00000216771.1	protein_coding	chr10:85102743-85120618
chr10	85284326	85284634	-	L1MB8	LINE	L1	chr10	85284332	85284334	-	ENSMUST00000185041.1,ENSMUSG00000098852.1	Gm27392	ENSMUSG00000098852.1	ENSMUST00000185041.1	miRNA	chr10:85284233-85284333
chr10	85333828	85334142	+	ORR1C1	LTR	ERVL-MaLR	chr10	85333900	85333902	+	ENSMUST00000157270.1,ENSMUSG00000087895.1	Gm25281	ENSMUSG00000087895.1	ENSMUST00000157270.1	miRNA	chr10:85333901-85334004
chr10	85639416	85639755	-	ORR1F	LTR	ERVL-MaLR	chr10	85639572	85639574	+	ENSMUST00000128338.7,ENSMUSG00000020042.15	Btbd11	ENSMUSG00000020042.15	ENSMUST00000128338.7	protein_coding	chr10:85639573-85660289
chr10	85645070	85645209	-	B1_Mus2	SINE	Alu	chr10	85645202	85645204	+	ENSMUST00000156123.1,ENSMUSG00000020042.15	Btbd11	ENSMUSG00000020042.15	ENSMUST00000156123.1	protein_coding	chr10:85645203-85660292
chr10	85654020	85654400	-	ORR1D2	LTR	ERVL-MaLR	chr10	85654157	85654159	+	ENSMUST00000145433.1,ENSMUSG00000020042.15	Btbd11	ENSMUSG00000020042.15	ENSMUST00000145433.1	protein_coding	chr10:85654158-85658260
chr10	85901863	85901976	-	PB1	SINE	Alu	chr10	85901914	85901916	-	ENSMUST00000218743.1,ENSMUSG00000035529.10	Prdm4	ENSMUSG00000035529.10	ENSMUST00000218743.1	protein_coding	chr10:85893407-85901915
chr10	86038684	86038788	-	U6	snRNA	snRNA	chr10	86038787	86038789	-	ENSMUST00000104077.1,ENSMUSG00000077265.1	Gm24430	ENSMUSG00000077265.1	ENSMUST00000104077.1	snRNA	chr10:86038685-86038788
chr10	86095797	86096051	+	B4	SINE	B4	chr10	86095858	86095860	+	ENSMUST00000218077.1,ENSMUSG00000112493.1	4930486F22Rik	ENSMUSG00000112493.1	ENSMUST00000218077.1	antisense	chr10:86095859-86113586
chr10	86693076	86693224	+	B1_Mur3	SINE	Alu	chr10	86693094	86693096	-	ENSMUST00000152600.1,ENSMUSG00000084899.1	Gm15344	ENSMUSG00000084899.1	ENSMUST00000152600.1	processed_transcript	chr10:86692119-86693095
chr10	86752627	86753793	+	Lx3_Mus	LINE	L1	chr10	86753431	86753433	+	ENSMUST00000219070.1,ENSMUSG00000044937.15	Ttc41	ENSMUSG00000044937.15	ENSMUST00000219070.1	protein_coding	chr10:86753432-86760918
chr10	86972002	86972225	+	LTR41B	LTR	ERVL	chr10	86972215	86972217	+	ENSMUST00000162837.1,ENSMUSG00000089656.1	Gm16271	ENSMUSG00000089656.1	ENSMUST00000162837.1	antisense	chr10:86972216-87028015
chr10	87289400	87289580	+	L1M5	LINE	L1	chr10	87289492	87289494	+	ENSMUST00000220397.1,ENSMUSG00000103862.3	Gm10764	ENSMUSG00000103862.3	ENSMUST00000220397.1	TEC	chr10:87289493-87291827
chr10	87289596	87290741	-	Lx8	LINE	L1	chr10	87290732	87290734	+	ENSMUST00000193976.1,ENSMUSG00000103862.3	Gm10764	ENSMUSG00000103862.3	ENSMUST00000193976.1	TEC	chr10:87290733-87291110
chr10	87364039	87364146	-	U6	snRNA	snRNA	chr10	87364145	87364147	-	ENSMUST00000179147.1,ENSMUSG00000096692.1	Gm23191	ENSMUSG00000096692.1	ENSMUST00000179147.1	snRNA	chr10:87364040-87364146
chr10	87828345	87828718	+	Lx8	LINE	L1	chr10	87828361	87828363	-	ENSMUST00000139652.1,ENSMUSG00000058934.8	Igf1os	ENSMUSG00000058934.8	ENSMUST00000139652.1	antisense	chr10:87826377-87828362
chr10	87980323	87980667	+	ORR1A1	LTR	ERVL-MaLR	chr10	87980461	87980463	+	ENSMUST00000219418.1,ENSMUSG00000112183.1	Gm48306	ENSMUSG00000112183.1	ENSMUST00000219418.1	lincRNA	chr10:87980462-87984220
chr10	88204447	88205154	-	MERVL_2A-int	LTR	ERVL	chr10	88204545	88204547	+	ENSMUST00000182359.1,ENSMUSG00000020056.16	Washc3	ENSMUSG00000020056.16	ENSMUST00000182359.1	protein_coding	chr10:88204546-88234660
chr10	88383479	88383773	-	RMER10A	LTR	ERVL	chr10	88383710	88383712	-	ENSMUST00000181000.1,ENSMUSG00000096945.1	Gm26546	ENSMUSG00000096945.1	ENSMUST00000181000.1	lincRNA	chr10:88379244-88383711
chr10	88449703	88450079	-	MTD	LTR	ERVL-MaLR	chr10	88449886	88449888	-	ENSMUST00000146132.1,ENSMUSG00000087429.1	Gm16235	ENSMUSG00000087429.1	ENSMUST00000146132.1	antisense	chr10:88444236-88449887
chr10	88503821	88503914	+	GC_rich	Low_complexity	Low_complexity	chr10	88503888	88503890	-	ENSMUST00000139109.7,ENSMUSG00000060002.14	Chpt1	ENSMUSG00000060002.14	ENSMUST00000139109.7	protein_coding	chr10:88472839-88503889
chr10	88503980	88504089	+	G-rich	Low_complexity	Low_complexity	chr10	88504072	88504074	-	ENSMUST00000117440.7,ENSMUSG00000060002.14	Chpt1	ENSMUSG00000060002.14	ENSMUST00000117440.7	protein_coding	chr10:88469514-88504073
chr10	88503980	88504089	+	G-rich	Low_complexity	Low_complexity	chr10	88503998	88504000	-	ENSMUST00000126074.7,ENSMUSG00000060002.14	Chpt1	ENSMUSG00000060002.14	ENSMUST00000126074.7	protein_coding	chr10:88472419-88503999
chr10	88710010	88710127	-	5S	rRNA	rRNA	chr10	88710126	88710128	-	ENSMUST00000083071.1,ENSMUSG00000065005.1	n-R5s79	ENSMUSG00000065005.1	ENSMUST00000083071.1	rRNA	chr10:88710008-88710127
chr10	88777658	88777850	+	B2_Mm2	SINE	B2	chr10	88777829	88777831	-	ENSMUST00000220275.1,ENSMUSG00000004356.8	Utp20	ENSMUSG00000004356.8	ENSMUST00000220275.1	protein_coding	chr10:88776194-88777830
chr10	89802454	89802631	+	(TAGG)n	Simple_repeat	Simple_repeat	chr10	89802596	89802598	+	ENSMUST00000219749.1,ENSMUSG00000019951.10	Uhrf1bp1l	ENSMUSG00000019951.10	ENSMUST00000219749.1	protein_coding	chr10:89802597-89804793
chr10	89821339	89821446	-	U6	snRNA	snRNA	chr10	89821445	89821447	-	ENSMUST00000179942.1,ENSMUSG00000093967.1	Gm26180	ENSMUSG00000093967.1	ENSMUST00000179942.1	snRNA	chr10:89821340-89821446
chr10	90450909	90451006	+	U6	snRNA	snRNA	chr10	90450909	90450911	+	ENSMUST00000157596.1,ENSMUSG00000088221.1	Gm22602	ENSMUSG00000088221.1	ENSMUST00000157596.1	snRNA	chr10:90450910-90451004
chr10	91005740	91005829	+	U6	snRNA	snRNA	chr10	91005740	91005742	+	ENSMUST00000157341.1,ENSMUSG00000087966.1	Gm25390	ENSMUSG00000087966.1	ENSMUST00000157341.1	snRNA	chr10:91005741-91005843
chr10	91100377	91100515	+	B4A	SINE	B4	chr10	91100429	91100431	+	ENSMUST00000211056.1,ENSMUSG00000019975.12	Ikbip	ENSMUSG00000019975.12	ENSMUST00000211056.1	protein_coding	chr10:91100430-91102504
chr10	91220585	91220666	+	B1_Mur3	SINE	Alu	chr10	91220641	91220643	-	ENSMUST00000216311.1,ENSMUSG00000111544.1	4930534H03Rik	ENSMUSG00000111544.1	ENSMUST00000216311.1	lincRNA	chr10:91208258-91220642
chr10	91220585	91220666	+	B1_Mur3	SINE	Alu	chr10	91220618	91220620	-	ENSMUST00000216451.1,ENSMUSG00000111544.1	4930534H03Rik	ENSMUSG00000111544.1	ENSMUST00000216451.1	lincRNA	chr10:91208494-91220619
chr10	91304310	91310499	-	L1Md_F2	LINE	L1	chr10	91310344	91310346	+	ENSMUST00000214371.1,ENSMUSG00000111525.1	Gm47082	ENSMUSG00000111525.1	ENSMUST00000214371.1	lincRNA	chr10:91310345-91312450
chr10	92400796	92401212	+	RLTR17	LTR	ERVK	chr10	92401013	92401015	+	ENSMUST00000216155.1,ENSMUSG00000110794.1	4930401A07Rik	ENSMUSG00000110794.1	ENSMUST00000216155.1	lincRNA	chr10:92401014-92404910
chr10	92400796	92401212	+	RLTR17	LTR	ERVK	chr10	92401013	92401015	+	ENSMUST00000214657.1,ENSMUSG00000110794.1	4930401A07Rik	ENSMUSG00000110794.1	ENSMUST00000214657.1	lincRNA	chr10:92401014-92417495
chr10	92836208	92836376	+	Kanga1	DNA	TcMar-Tc2	chr10	92836345	92836347	-	ENSMUST00000163209.1,ENSMUSG00000020014.17	Cfap54	ENSMUSG00000020014.17	ENSMUST00000163209.1	protein_coding	chr10:92796753-92836346
chr10	93084990	93085456	+	RLTR31B2	LTR	ERVK	chr10	93085250	93085252	+	ENSMUST00000214288.1,ENSMUSG00000111013.1	Gm32468	ENSMUSG00000111013.1	ENSMUST00000214288.1	lincRNA	chr10:93085251-93093357
chr10	93206539	93206996	+	L1MEg	LINE	L1	chr10	93206986	93206988	+	ENSMUST00000214445.1,ENSMUSG00000020015.10	Cdk17	ENSMUSG00000020015.10	ENSMUST00000214445.1	protein_coding	chr10:93206987-93208318
chr10	93311092	93311197	+	C-rich	Low_complexity	Low_complexity	chr10	93311134	93311136	-	ENSMUST00000008542.11,ENSMUSG00000008398.15	Elk3	ENSMUSG00000008398.15	ENSMUST00000008542.11	protein_coding	chr10:93247414-93311135
chr10	93311092	93311197	+	C-rich	Low_complexity	Low_complexity	chr10	93311134	93311136	-	ENSMUST00000133365.1,ENSMUSG00000008398.15	Elk3	ENSMUSG00000008398.15	ENSMUST00000133365.1	protein_coding	chr10:93284431-93311135
chr10	93335244	93335420	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr10	93335392	93335394	+	ENSMUST00000212186.2,ENSMUSG00000110647.2	Gm17745	ENSMUSG00000110647.2	ENSMUST00000212186.2	lincRNA	chr10:93335393-93348877
chr10	93433089	93433291	-	MER57D	LTR	ERV1	chr10	93433106	93433108	+	ENSMUST00000183565.1,ENSMUSG00000098679.1	Mir7688	ENSMUSG00000098679.1	ENSMUST00000183565.1	miRNA	chr10:93433107-93433162
chr10	93540029	93540066	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	93540032	93540034	-	ENSMUST00000016034.2,ENSMUSG00000015890.2	Amdhd1	ENSMUSG00000015890.2	ENSMUST00000016034.2	protein_coding	chr10:93523338-93540033
chr10	93728048	93728222	+	B2_Mm2	SINE	B2	chr10	93728206	93728208	-	ENSMUST00000131387.2,ENSMUSG00000086891.2	Gm15963	ENSMUSG00000086891.2	ENSMUST00000131387.2	antisense	chr10:93726726-93728207
chr10	93807297	93807404	+	U6	snRNA	snRNA	chr10	93807297	93807299	+	ENSMUST00000178842.1,ENSMUSG00000096598.1	Gm26239	ENSMUSG00000096598.1	ENSMUST00000178842.1	snRNA	chr10:93807298-93807404
chr10	93887426	93887522	-	B1_Mus1	SINE	Alu	chr10	93887485	93887487	-	ENSMUST00000216232.1,ENSMUSG00000036112.15	Metap2	ENSMUSG00000036112.15	ENSMUST00000216232.1	protein_coding	chr10:93870161-93887486
chr10	93889695	93889737	+	(GA)n	Simple_repeat	Simple_repeat	chr10	93889727	93889729	-	ENSMUST00000181236.7,ENSMUSG00000036112.15	Metap2	ENSMUSG00000036112.15	ENSMUST00000181236.7	protein_coding	chr10:93879461-93889728
chr10	93890224	93890346	+	B1_Mur4	SINE	Alu	chr10	93890293	93890295	-	ENSMUST00000180739.1,ENSMUSG00000036112.15	Metap2	ENSMUSG00000036112.15	ENSMUST00000180739.1	protein_coding	chr10:93889689-93890294
chr10	93916327	93916415	+	G-rich	Low_complexity	Low_complexity	chr10	93916335	93916337	-	ENSMUST00000157173.1,ENSMUSG00000087798.1	Gm25962	ENSMUSG00000087798.1	ENSMUST00000157173.1	snoRNA	chr10:93916169-93916336
chr10	94108580	94108793	-	B3	SINE	B2	chr10	94108738	94108740	+	ENSMUST00000214721.1,ENSMUSG00000111539.1	Gm48372	ENSMUSG00000111539.1	ENSMUST00000214721.1	TEC	chr10:94108739-94111153
chr10	94156235	94156368	+	B4A	SINE	B4	chr10	94156285	94156287	+	ENSMUST00000099343.1,ENSMUSG00000005897.14	Nr2c1	ENSMUSG00000005897.14	ENSMUST00000099343.1	protein_coding	chr10:94156286-94195351
chr10	94184567	94184760	-	B2_Mm1t	SINE	B2	chr10	94184572	94184574	-	ENSMUST00000083362.1,ENSMUSG00000065296.1	Gm26122	ENSMUSG00000065296.1	ENSMUST00000083362.1	snRNA	chr10:94184492-94184573
chr10	94611959	94612318	+	Charlie8	DNA	hAT-Charlie	chr10	94612083	94612085	-	ENSMUST00000146744.2,ENSMUSG00000086269.2	Tmcc3os	ENSMUSG00000086269.2	ENSMUST00000146744.2	antisense	chr10:94567828-94612084
chr10	94620536	94620667	+	MTE2a	LTR	ERVL-MaLR	chr10	94620539	94620541	+	ENSMUST00000219287.1,ENSMUSG00000112477.1	Gm48657	ENSMUSG00000112477.1	ENSMUST00000219287.1	lincRNA	chr10:94620540-94648657
chr10	94883743	94884484	-	Lx5	LINE	L1	chr10	94883791	94883793	-	ENSMUST00000220244.1,ENSMUSG00000112736.1	Gm48718	ENSMUSG00000112736.1	ENSMUST00000220244.1	TEC	chr10:94881311-94883792
chr10	94999358	94999567	+	MTE2a	LTR	ERVL-MaLR	chr10	94999441	94999443	-	ENSMUST00000218192.1,ENSMUSG00000112277.1	Gm48867	ENSMUSG00000112277.1	ENSMUST00000218192.1	lincRNA	chr10:94993952-94999442
chr10	95116369	95116552	-	B2_Mm2	SINE	B2	chr10	95116378	95116380	+	ENSMUST00000219913.1,ENSMUSG00000112677.1	Gm48868	ENSMUSG00000112677.1	ENSMUST00000219913.1	TEC	chr10:95116379-95117731
chr10	95314802	95314911	+	MIR	SINE	MIR	chr10	95314852	95314854	-	ENSMUST00000219461.1,ENSMUSG00000112744.1	Gm48880	ENSMUSG00000112744.1	ENSMUST00000219461.1	TEC	chr10:95312870-95314853
chr10	95336192	95336633	+	MT2C_Mm	LTR	ERVL	chr10	95336275	95336277	+	ENSMUST00000185313.1,ENSMUSG00000100550.2	2310039L15Rik	ENSMUSG00000100550.2	ENSMUST00000185313.1	lincRNA	chr10:95336276-95363216
chr10	95354852	95355031	+	G-rich	Low_complexity	Low_complexity	chr10	95354887	95354889	+	ENSMUST00000220058.1,ENSMUSG00000100550.2	2310039L15Rik	ENSMUSG00000100550.2	ENSMUST00000220058.1	lincRNA	chr10:95354888-95363209
chr10	95361529	95361742	-	L2b	LINE	L2	chr10	95361597	95361599	+	ENSMUST00000219492.1,ENSMUSG00000100550.2	2310039L15Rik	ENSMUSG00000100550.2	ENSMUST00000219492.1	lincRNA	chr10:95361598-95366202
chr10	95392942	95392975	+	(A)n	Simple_repeat	Simple_repeat	chr10	95392966	95392968	-	ENSMUST00000130784.7,ENSMUSG00000020027.18	Socs2	ENSMUSG00000020027.18	ENSMUST00000130784.7	protein_coding	chr10:95387667-95392967
chr10	95416855	95416895	+	GC_rich	Low_complexity	Low_complexity	chr10	95416856	95416858	-	ENSMUST00000020215.15,ENSMUSG00000020027.18	Socs2	ENSMUSG00000020027.18	ENSMUST00000020215.15	protein_coding	chr10:95411490-95416857
chr10	95460916	95461444	-	RLTR12B2	LTR	ERVK	chr10	95461223	95461225	-	ENSMUST00000219379.1,ENSMUSG00000112261.1	Gm47599	ENSMUSG00000112261.1	ENSMUST00000219379.1	lincRNA	chr10:95445316-95461224
chr10	95603791	95604008	+	7SK	RNA	RNA	chr10	95603791	95603793	+	ENSMUST00000158993.1,ENSMUSG00000089618.1	Gm23776	ENSMUSG00000089618.1	ENSMUST00000158993.1	misc_RNA	chr10:95603792-95604116
chr10	95632217	95632559	-	MTE2a	LTR	ERVL-MaLR	chr10	95632238	95632240	-	ENSMUST00000219656.1,ENSMUSG00000112439.1	Gm33336	ENSMUSG00000112439.1	ENSMUST00000219656.1	lincRNA	chr10:95630237-95632239
chr10	95673366	95673452	+	MIRc	SINE	MIR	chr10	95673388	95673390	-	ENSMUST00000218771.1,ENSMUSG00000074780.2	Anapc15-ps	ENSMUSG00000074780.2	ENSMUST00000218771.1	protein_coding	chr10:95672991-95673389
chr10	95673366	95673452	+	MIRc	SINE	MIR	chr10	95673450	95673452	-	ENSMUST00000099328.1,ENSMUSG00000074780.2	Anapc15-ps	ENSMUSG00000074780.2	ENSMUST00000099328.1	protein_coding	chr10:95672991-95673451
chr10	95729890	95730322	-	LTR72_RN	LTR	ERV1	chr10	95730182	95730184	+	ENSMUST00000218485.1,ENSMUSG00000112188.1	Gm47708	ENSMUSG00000112188.1	ENSMUST00000218485.1	lincRNA	chr10:95730183-95739356
chr10	95731059	95731502	+	RMER1B	Other	Other	chr10	95731226	95731228	+	ENSMUST00000219583.1,ENSMUSG00000112188.1	Gm47708	ENSMUSG00000112188.1	ENSMUST00000219583.1	lincRNA	chr10:95731227-95739353
chr10	95817413	95817661	-	L1MB4	LINE	L1	chr10	95817569	95817571	+	ENSMUST00000220129.1,ENSMUSG00000112599.1	Gm47719	ENSMUSG00000112599.1	ENSMUST00000220129.1	lincRNA	chr10:95817570-95849118
chr10	95870796	95870953	-	MLTR31D_MM	LTR	ERVK	chr10	95870798	95870800	-	ENSMUST00000218412.1,ENSMUSG00000111992.1	Gm47724	ENSMUSG00000111992.1	ENSMUST00000218412.1	processed_pseudogene	chr10:95870483-95870799
chr10	96164262	96164657	+	MTA_Mm	LTR	ERVL-MaLR	chr10	96164330	96164332	+	ENSMUST00000175297.1,ENSMUSG00000094523.1	Gm22913	ENSMUSG00000094523.1	ENSMUST00000175297.1	miRNA	chr10:96164331-96164431
chr10	96309924	96310135	-	L2a	LINE	L2	chr10	96310130	96310132	+	ENSMUST00000218518.1,ENSMUSG00000112290.1	Gm33782	ENSMUSG00000112290.1	ENSMUST00000218518.1	lincRNA	chr10:96310131-96362367
chr10	96595681	96595774	+	MTE2a	LTR	ERVL-MaLR	chr10	96595730	96595732	-	ENSMUST00000219313.1,ENSMUSG00000112354.1	Gm33843	ENSMUSG00000112354.1	ENSMUST00000219313.1	lincRNA	chr10:96519157-96595731
chr10	96711709	96711829	+	GA-rich	Low_complexity	Low_complexity	chr10	96711806	96711808	+	ENSMUST00000219424.1,ENSMUSG00000112362.1	Gm48507	ENSMUSG00000112362.1	ENSMUST00000219424.1	processed_pseudogene	chr10:96711807-96712086
chr10	96958483	96959112	+	RLTR18	LTR	ERVK	chr10	96958870	96958872	-	ENSMUST00000219918.1,ENSMUSG00000112488.1	Gm33981	ENSMUSG00000112488.1	ENSMUST00000219918.1	lincRNA	chr10:96903158-96958871
chr10	98300991	98301021	+	AT_rich	Low_complexity	Low_complexity	chr10	98301018	98301020	+	ENSMUST00000220324.1,ENSMUSG00000112457.1	Gm48687	ENSMUSG00000112457.1	ENSMUST00000220324.1	processed_pseudogene	chr10:98301019-98301253
chr10	98537234	98537527	-	RLTR27	LTR	ERVK	chr10	98537477	98537479	+	ENSMUST00000219170.1,ENSMUSG00000112874.1	Gm34297	ENSMUSG00000112874.1	ENSMUST00000219170.1	lincRNA	chr10:98537478-98569036
chr10	98537234	98537527	-	RLTR27	LTR	ERVK	chr10	98537479	98537481	+	ENSMUST00000218569.1,ENSMUSG00000112874.1	Gm34297	ENSMUSG00000112874.1	ENSMUST00000218569.1	lincRNA	chr10:98537480-98568484
chr10	98537234	98537527	-	RLTR27	LTR	ERVK	chr10	98537479	98537481	+	ENSMUST00000219569.1,ENSMUSG00000112874.1	Gm34297	ENSMUSG00000112874.1	ENSMUST00000219569.1	lincRNA	chr10:98537480-98569836
chr10	98537234	98537527	-	RLTR27	LTR	ERVK	chr10	98537481	98537483	+	ENSMUST00000220028.1,ENSMUSG00000112874.1	Gm34297	ENSMUSG00000112874.1	ENSMUST00000220028.1	lincRNA	chr10:98537482-98568484
chr10	98990638	98990974	-	L1Md_F3	LINE	L1	chr10	98990879	98990881	+	ENSMUST00000220358.1,ENSMUSG00000019943.10	Atp2b1	ENSMUSG00000019943.10	ENSMUST00000220358.1	protein_coding	chr10:98990880-98994567
chr10	99184411	99184910	-	MT2_Mm	LTR	ERVL	chr10	99184609	99184611	-	ENSMUST00000160182.1,ENSMUSG00000089994.1	Gm16239	ENSMUSG00000089994.1	ENSMUST00000160182.1	antisense	chr10:99179184-99184610
chr10	99274682	99274813	-	CR1_Mam	LINE	CR1	chr10	99274704	99274706	+	ENSMUST00000219440.1,ENSMUSG00000112544.1	Gm48089	ENSMUSG00000112544.1	ENSMUST00000219440.1	lincRNA	chr10:99274705-99277186
chr10	99274682	99274813	-	CR1_Mam	LINE	CR1	chr10	99274795	99274797	+	ENSMUST00000218105.1,ENSMUSG00000112544.1	Gm48089	ENSMUSG00000112544.1	ENSMUST00000218105.1	lincRNA	chr10:99274796-99279073
chr10	99608761	99609227	-	IAPLTR2_Mm	LTR	ERVK	chr10	99609170	99609172	+	ENSMUST00000218263.1,ENSMUSG00000111962.1	Gm20110	ENSMUSG00000111962.1	ENSMUST00000218263.1	lincRNA	chr10:99609171-99658134
chr10	99718953	99725386	-	L1Md_A	LINE	L1	chr10	99719142	99719144	+	ENSMUST00000222959.1,ENSMUSG00000113032.1	Gm47578	ENSMUSG00000113032.1	ENSMUST00000222959.1	antisense	chr10:99719143-99891158
chr10	100139289	100139795	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr10	100139500	100139502	+	ENSMUST00000103855.1,ENSMUSG00000096586.1	Gm22918	ENSMUSG00000096586.1	ENSMUST00000103855.1	miRNA	chr10:100139501-100139610
chr10	100144042	100144548	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr10	100144125	100144127	-	ENSMUST00000218902.1,ENSMUSG00000112831.1	AC167229.1	ENSMUSG00000112831.1	ENSMUST00000218902.1	lincRNA	chr10:100129868-100144126
chr10	100144042	100144548	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr10	100144253	100144255	+	ENSMUST00000103846.1,ENSMUSG00000095539.1	Gm25287	ENSMUSG00000095539.1	ENSMUST00000103846.1	miRNA	chr10:100144254-100144363
chr10	100202534	100204467	-	L1Md_F2	LINE	L1	chr10	100204341	100204343	-	ENSMUST00000220057.1,ENSMUSG00000112633.1	Gm47627	ENSMUSG00000112633.1	ENSMUST00000220057.1	TEC	chr10:100203874-100204342
chr10	100315773	100321811	-	L1Md_F3	LINE	L1	chr10	100320269	100320271	-	ENSMUST00000218505.1,ENSMUSG00000112522.1	Gm47632	ENSMUSG00000112522.1	ENSMUST00000218505.1	processed_pseudogene	chr10:100317024-100320270
chr10	100315773	100321811	-	L1Md_F3	LINE	L1	chr10	100321424	100321426	-	ENSMUST00000220250.1,ENSMUSG00000112122.1	Gm47628	ENSMUSG00000112122.1	ENSMUST00000220250.1	processed_pseudogene	chr10:100320313-100321425
chr10	100315773	100321811	-	L1Md_F3	LINE	L1	chr10	100321101	100321103	+	ENSMUST00000217916.1,ENSMUSG00000112178.1	Gm47630	ENSMUSG00000112178.1	ENSMUST00000217916.1	processed_pseudogene	chr10:100321102-100321371
chr10	100383831	100383951	-	B1_Mus1	SINE	Alu	chr10	100383830	100383832	-	ENSMUST00000219325.1,ENSMUSG00000112485.1	Gm47631	ENSMUSG00000112485.1	ENSMUST00000219325.1	processed_transcript	chr10:100372863-100383831
chr10	100432931	100433735	-	L1Md_A	LINE	L1	chr10	100433568	100433570	-	ENSMUST00000220387.1,ENSMUSG00000112580.1	Gm47673	ENSMUSG00000112580.1	ENSMUST00000220387.1	TEC	chr10:100432938-100433569
chr10	100646595	100651897	+	L1Md_T	LINE	L1	chr10	100651629	100651631	+	ENSMUST00000219685.1,ENSMUSG00000112328.1	Gm47325	ENSMUSG00000112328.1	ENSMUST00000219685.1	processed_pseudogene	chr10:100651630-100651942
chr10	101730116	101731102	-	Lx6	LINE	L1	chr10	101730774	101730776	+	ENSMUST00000218558.1,ENSMUSG00000111931.1	Gm47032	ENSMUSG00000111931.1	ENSMUST00000218558.1	TEC	chr10:101730775-101731561
chr10	102315535	102320905	+	L1Md_A	LINE	L1	chr10	102319612	102319614	+	ENSMUST00000219521.1,ENSMUSG00000112342.1	Gm47031	ENSMUSG00000112342.1	ENSMUST00000219521.1	sense_intronic	chr10:102319613-102321894
chr10	102374053	102374587	+	RLTR1A2_MM	LTR	ERV1	chr10	102374434	102374436	+	ENSMUST00000120748.1,ENSMUSG00000019888.16	Mgat4c	ENSMUSG00000019888.16	ENSMUST00000120748.1	protein_coding	chr10:102374435-102390313
chr10	102415877	102415898	+	(T)n	Simple_repeat	Simple_repeat	chr10	102415882	102415884	+	ENSMUST00000218629.1,ENSMUSG00000111990.1	Gm47033	ENSMUSG00000111990.1	ENSMUST00000218629.1	lincRNA	chr10:102415883-102418014
chr10	102426902	102433167	-	L1Md_T	LINE	L1	chr10	102432337	102432339	-	ENSMUST00000220420.1,ENSMUSG00000112012.1	Gm47025	ENSMUSG00000112012.1	ENSMUST00000220420.1	TEC	chr10:102431908-102432338
chr10	102435268	102435594	+	IAPEY4_LTR	LTR	ERVK	chr10	102435268	102435270	+	ENSMUST00000219113.1,ENSMUSG00000112073.1	Gm47101	ENSMUSG00000112073.1	ENSMUST00000219113.1	lincRNA	chr10:102435269-102435543
chr10	102512136	102512242	+	C-rich	Low_complexity	Low_complexity	chr10	102512221	102512223	+	ENSMUST00000219445.1,ENSMUSG00000044921.5	Rassf9	ENSMUSG00000044921.5	ENSMUST00000219445.1	protein_coding	chr10:102512222-102549736
chr10	102818817	102819369	+	MT2B	LTR	ERVL	chr10	102819319	102819321	+	ENSMUST00000218458.1,ENSMUSG00000112046.1	Gm5175	ENSMUSG00000112046.1	ENSMUST00000218458.1	transcribed_processed_pseudogene	chr10:102819320-102838659
chr10	103022562	103022627	+	(TG)n	Simple_repeat	Simple_repeat	chr10	103022573	103022575	-	ENSMUST00000164226.2,ENSMUSG00000036602.14	Alx1	ENSMUSG00000036602.14	ENSMUST00000164226.2	protein_coding	chr10:103008151-103022574
chr10	103029110	103029190	+	C-rich	Low_complexity	Low_complexity	chr10	103029115	103029117	-	ENSMUST00000219194.1,ENSMUSG00000036602.14	Alx1	ENSMUSG00000036602.14	ENSMUST00000219194.1	protein_coding	chr10:103008864-103029116
chr10	103121074	103121263	-	MER2	DNA	TcMar-Tigger	chr10	103121235	103121237	+	ENSMUST00000104340.1,ENSMUSG00000077528.1	Gm25376	ENSMUSG00000077528.1	ENSMUST00000104340.1	snoRNA	chr10:103121236-103121368
chr10	103207555	103214152	-	L1Md_T	LINE	L1	chr10	103213436	103213438	-	ENSMUST00000220380.1,ENSMUSG00000112622.1	Gm47164	ENSMUSG00000112622.1	ENSMUST00000220380.1	TEC	chr10:103207748-103213437
chr10	103367773	103367906	+	(CA)n	Simple_repeat	Simple_repeat	chr10	103367782	103367784	+	ENSMUST00000218844.1,ENSMUSG00000019894.14	Slc6a15	ENSMUSG00000019894.14	ENSMUST00000218844.1	protein_coding	chr10:103367783-103370218
chr10	103367773	103367906	+	(CA)n	Simple_repeat	Simple_repeat	chr10	103367807	103367809	+	ENSMUST00000179636.2,ENSMUSG00000019894.14	Slc6a15	ENSMUSG00000019894.14	ENSMUST00000179636.2	protein_coding	chr10:103367808-103419375
chr10	103367773	103367906	+	(CA)n	Simple_repeat	Simple_repeat	chr10	103367831	103367833	+	ENSMUST00000217905.1,ENSMUSG00000019894.14	Slc6a15	ENSMUSG00000019894.14	ENSMUST00000217905.1	protein_coding	chr10:103367832-103393483
chr10	103367773	103367906	+	(CA)n	Simple_repeat	Simple_repeat	chr10	103367842	103367844	+	ENSMUST00000074204.11,ENSMUSG00000019894.14	Slc6a15	ENSMUSG00000019894.14	ENSMUST00000074204.11	protein_coding	chr10:103367843-103419377
chr10	103507122	103507463	+	RLTR10D	LTR	ERVK	chr10	103507361	103507363	+	ENSMUST00000219620.1,ENSMUSG00000112636.1	Gm47223	ENSMUSG00000112636.1	ENSMUST00000219620.1	lincRNA	chr10:103507362-103566565
chr10	103512927	103519133	-	L1Md_A	LINE	L1	chr10	103512927	103512929	+	ENSMUST00000218784.1,ENSMUSG00000112319.1	Gm47221	ENSMUSG00000112319.1	ENSMUST00000218784.1	lincRNA	chr10:103512928-103571685
chr10	103569397	103575593	-	L1Md_A	LINE	L1	chr10	103569400	103569402	-	ENSMUST00000217758.1,ENSMUSG00000112839.1	Gm47222	ENSMUSG00000112839.1	ENSMUST00000217758.1	processed_pseudogene	chr10:103569209-103569401
chr10	103858139	103858632	-	MT2_Mm	LTR	ERVL	chr10	103858331	103858333	-	ENSMUST00000218181.1,ENSMUSG00000112554.1	Gm47224	ENSMUSG00000112554.1	ENSMUST00000218181.1	lincRNA	chr10:103856267-103858332
chr10	103893396	103893818	+	Lx4A	LINE	L1	chr10	103893537	103893539	+	ENSMUST00000220325.1,ENSMUSG00000112570.1	Gm47225	ENSMUSG00000112570.1	ENSMUST00000220325.1	processed_pseudogene	chr10:103893538-103893806
chr10	103959542	103959651	+	U6	snRNA	snRNA	chr10	103959542	103959544	+	ENSMUST00000082696.1,ENSMUSG00000064630.1	Gm25143	ENSMUSG00000064630.1	ENSMUST00000082696.1	snRNA	chr10:103959543-103959651
chr10	103986746	103987623	+	RMER17B	LTR	ERVK	chr10	103986992	103986994	+	ENSMUST00000218778.1,ENSMUSG00000112281.1	Gm47226	ENSMUSG00000112281.1	ENSMUST00000218778.1	lincRNA	chr10:103986993-103987906
chr10	104142683	104143170	+	MT2_Mm	LTR	ERVL	chr10	104142986	104142988	+	ENSMUST00000181634.7,ENSMUSG00000091779.8	Gm21293	ENSMUSG00000091779.8	ENSMUST00000181634.7	protein_coding	chr10:104142987-104145456
chr10	104151193	104151680	+	MT2_Mm	LTR	ERVL	chr10	104151496	104151498	+	ENSMUST00000181287.4,ENSMUSG00000097427.5	Gm6763	ENSMUSG00000097427.5	ENSMUST00000181287.4	protein_coding	chr10:104151497-104153965
chr10	104159702	104160189	+	MT2_Mm	LTR	ERVL	chr10	104160005	104160007	+	ENSMUST00000181179.4,ENSMUSG00000097878.5	Gm8764	ENSMUSG00000097878.5	ENSMUST00000181179.4	protein_coding	chr10:104160006-104162473
chr10	104168211	104168698	+	MT2_Mm	LTR	ERVL	chr10	104168514	104168516	+	ENSMUST00000181059.7,ENSMUSG00000097550.7	Gm21304	ENSMUSG00000097550.7	ENSMUST00000181059.7	protein_coding	chr10:104168515-104170983
chr10	104176720	104177207	+	MT2_Mm	LTR	ERVL	chr10	104177023	104177025	+	ENSMUST00000180889.7,ENSMUSG00000094144.8	Gm21312	ENSMUSG00000094144.8	ENSMUST00000180889.7	protein_coding	chr10:104177024-104179491
chr10	104185229	104185716	+	MT2_Mm	LTR	ERVL	chr10	104185532	104185534	+	ENSMUST00000181703.7,ENSMUSG00000095022.8	Gm20765	ENSMUSG00000095022.8	ENSMUST00000181703.7	protein_coding	chr10:104185533-104188000
chr10	104193738	104194225	+	MT2_Mm	LTR	ERVL	chr10	104194041	104194043	+	ENSMUST00000181615.7,ENSMUSG00000090854.9	Gm4340	ENSMUSG00000090854.9	ENSMUST00000181615.7	protein_coding	chr10:104194042-104196522
chr10	104224563	104225677	-	RLTR25B	LTR	ERVK	chr10	104224898	104224900	-	ENSMUST00000157718.1,ENSMUSG00000088343.1	Gm22339	ENSMUSG00000088343.1	ENSMUST00000157718.1	snRNA	chr10:104224838-104224899
chr10	104865248	104865401	-	Lx	LINE	L1	chr10	104865307	104865309	-	ENSMUST00000158394.1,ENSMUSG00000089019.1	Gm25522	ENSMUSG00000089019.1	ENSMUST00000158394.1	snRNA	chr10:104865204-104865308
chr10	105040272	105040438	+	U1	snRNA	snRNA	chr10	105040272	105040274	+	ENSMUST00000082498.1,ENSMUSG00000064432.1	Gm25587	ENSMUSG00000064432.1	ENSMUST00000082498.1	snRNA	chr10:105040273-105040438
chr10	105394068	105394622	+	Lx7	LINE	L1	chr10	105394285	105394287	-	ENSMUST00000219124.1,ENSMUSG00000112512.1	Gm48203	ENSMUSG00000112512.1	ENSMUST00000219124.1	TEC	chr10:105392502-105394286
chr10	105808145	105809044	+	L1_Mm	LINE	L1	chr10	105808866	105808868	-	ENSMUST00000218986.1,ENSMUSG00000112820.1	Gm48298	ENSMUSG00000112820.1	ENSMUST00000218986.1	TEC	chr10:105806538-105808867
chr10	105841039	105841069	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr10	105841066	105841068	+	ENSMUST00000020049.8,ENSMUSG00000019897.8	Ccdc59	ENSMUSG00000019897.8	ENSMUST00000020049.8	protein_coding	chr10:105841067-105847833
chr10	105841039	105841069	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr10	105841066	105841068	+	ENSMUST00000133538.1,ENSMUSG00000019897.8	Ccdc59	ENSMUSG00000019897.8	ENSMUST00000133538.1	protein_coding	chr10:105841067-105847833
chr10	106074172	106074386	+	MTA_Mm	LTR	ERVL-MaLR	chr10	106074226	106074228	+	ENSMUST00000219276.1,ENSMUSG00000112034.1	Gm48363	ENSMUSG00000112034.1	ENSMUST00000219276.1	TEC	chr10:106074227-106079076
chr10	106182648	106183189	+	LTRIS2	LTR	ERV1	chr10	106183020	106183022	+	ENSMUST00000220086.1,ENSMUSG00000112523.1	Gm48377	ENSMUSG00000112523.1	ENSMUST00000220086.1	TEC	chr10:106183021-106183891
chr10	106602437	106602534	+	B1_Mus2	SINE	Alu	chr10	106602479	106602481	-	ENSMUST00000218463.1,ENSMUSG00000112201.1	4930532I03Rik	ENSMUSG00000112201.1	ENSMUST00000218463.1	antisense	chr10:106555195-106602480
chr10	107205395	107205579	-	LTR33B	LTR	ERVL	chr10	107205573	107205575	-	ENSMUST00000219664.1,ENSMUSG00000112466.1	Gm29674	ENSMUSG00000112466.1	ENSMUST00000219664.1	lincRNA	chr10:107200816-107205574
chr10	107946329	107946716	+	MLT1H	LTR	ERVL-MaLR	chr10	107946644	107946646	+	ENSMUST00000219670.1,ENSMUSG00000112910.1	Gm29685	ENSMUSG00000112910.1	ENSMUST00000219670.1	lincRNA	chr10:107946645-107977834
chr10	108428012	108428170	+	B1_Mur4	SINE	Alu	chr10	108428066	108428068	+	ENSMUST00000177317.1,ENSMUSG00000093762.1	Gm25591	ENSMUSG00000093762.1	ENSMUST00000177317.1	miRNA	chr10:108428067-108428160
chr10	108956295	108956665	+	ORR1A4	LTR	ERVL-MaLR	chr10	108956487	108956489	-	ENSMUST00000219940.1,ENSMUSG00000112905.1	Gm47477	ENSMUSG00000112905.1	ENSMUST00000219940.1	TEC	chr10:108953357-108956488
chr10	109090047	109090279	-	7SK	RNA	RNA	chr10	109090274	109090276	-	ENSMUST00000157929.1,ENSMUSG00000088554.1	Gm22097	ENSMUSG00000088554.1	ENSMUST00000157929.1	misc_RNA	chr10:109089998-109090275
chr10	109368089	109368193	-	U6	snRNA	snRNA	chr10	109368192	109368194	-	ENSMUST00000083868.1,ENSMUSG00000065802.1	Gm23041	ENSMUSG00000065802.1	ENSMUST00000083868.1	snRNA	chr10:109368088-109368193
chr10	110892409	110892451	+	(CA)n	Simple_repeat	Simple_repeat	chr10	110892418	110892420	-	ENSMUST00000157822.1,ENSMUSG00000088447.1	Gm22186	ENSMUSG00000088447.1	ENSMUST00000157822.1	snoRNA	chr10:110892298-110892419
chr10	110896382	110896676	-	MLT1G1	LTR	ERVL-MaLR	chr10	110896487	110896489	-	ENSMUST00000188776.6,ENSMUSG00000101801.6	1700020G17Rik	ENSMUSG00000101801.6	ENSMUST00000188776.6	antisense	chr10:110784585-110896488
chr10	110896382	110896676	-	MLT1G1	LTR	ERVL-MaLR	chr10	110896517	110896519	-	ENSMUST00000191429.6,ENSMUSG00000101801.6	1700020G17Rik	ENSMUSG00000101801.6	ENSMUST00000191429.6	antisense	chr10:110801173-110896518
chr10	110896382	110896676	-	MLT1G1	LTR	ERVL-MaLR	chr10	110896549	110896551	-	ENSMUST00000191286.1,ENSMUSG00000101801.6	1700020G17Rik	ENSMUSG00000101801.6	ENSMUST00000191286.1	antisense	chr10:110812806-110896550
chr10	110896382	110896676	-	MLT1G1	LTR	ERVL-MaLR	chr10	110896536	110896538	-	ENSMUST00000190237.1,ENSMUSG00000101801.6	1700020G17Rik	ENSMUSG00000101801.6	ENSMUST00000190237.1	antisense	chr10:110835859-110896537
chr10	111129106	111129209	-	U6	snRNA	snRNA	chr10	111129208	111129210	-	ENSMUST00000157928.1,ENSMUSG00000088553.1	Gm22101	ENSMUSG00000088553.1	ENSMUST00000157928.1	snRNA	chr10:111129107-111129209
chr10	111337124	111337162	+	(CA)n	Simple_repeat	Simple_repeat	chr10	111337123	111337125	+	ENSMUST00000219123.1,ENSMUSG00000112246.1	Gm40761	ENSMUSG00000112246.1	ENSMUST00000219123.1	lincRNA	chr10:111337124-111347185
chr10	111473269	111473292	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	111473280	111473282	+	ENSMUST00000219143.1,ENSMUSG00000058799.16	Nap1l1	ENSMUSG00000058799.16	ENSMUST00000219143.1	protein_coding	chr10:111473281-111495009
chr10	111598912	111599274	+	RMER15-int	LTR	ERVL	chr10	111599176	111599178	+	ENSMUST00000219137.1,ENSMUSG00000112249.1	Gm30262	ENSMUSG00000112249.1	ENSMUST00000219137.1	lincRNA	chr10:111599177-111611338
chr10	112100670	112103939	-	ERVB4_1B-I_MM-int	LTR	ERVK	chr10	112101547	112101549	-	ENSMUST00000161922.1,ENSMUSG00000089667.1	Gm15914	ENSMUSG00000089667.1	ENSMUST00000161922.1	processed_pseudogene	chr10:112101240-112101548
chr10	112167314	112174741	-	L1Md_T	LINE	L1	chr10	112172539	112172541	+	ENSMUST00000132994.1,ENSMUSG00000035694.15	Caps2	ENSMUSG00000035694.15	ENSMUST00000132994.1	protein_coding	chr10:112172540-112215682
chr10	112315311	112315479	+	MIR3	SINE	MIR	chr10	112315339	112315341	+	ENSMUST00000218445.1,ENSMUSG00000035681.7	Kcnc2	ENSMUSG00000035681.7	ENSMUST00000218445.1	protein_coding	chr10:112315340-112465874
chr10	112726143	112726938	-	RMER17A	LTR	ERVK	chr10	112726887	112726889	+	ENSMUST00000187828.6,ENSMUSG00000100314.6	1700010J16Rik	ENSMUSG00000100314.6	ENSMUST00000187828.6	lincRNA	chr10:112726888-112785599
chr10	112726143	112726938	-	RMER17A	LTR	ERVK	chr10	112726925	112726927	+	ENSMUST00000189116.1,ENSMUSG00000100314.6	1700010J16Rik	ENSMUSG00000100314.6	ENSMUST00000189116.1	lincRNA	chr10:112726926-112785602
chr10	112931423	112931582	+	U1	snRNA	snRNA	chr10	112931423	112931425	+	ENSMUST00000082773.1,ENSMUSG00000064707.1	Gm22507	ENSMUSG00000064707.1	ENSMUST00000082773.1	snRNA	chr10:112931424-112931583
chr10	112960081	112960289	-	Lx10	LINE	L1	chr10	112960187	112960189	+	ENSMUST00000219465.1,ENSMUSG00000112807.1	Gm47519	ENSMUSG00000112807.1	ENSMUST00000219465.1	TEC	chr10:112960188-112961790
chr10	113113248	113113554	+	ORR1A2	LTR	ERVL-MaLR	chr10	113113388	113113390	+	ENSMUST00000220016.1,ENSMUSG00000112228.1	Gm47524	ENSMUSG00000112228.1	ENSMUST00000220016.1	lincRNA	chr10:113113389-113117926
chr10	113423571	113424228	-	RMER19A	LTR	ERVK	chr10	113424183	113424185	+	ENSMUST00000218916.1,ENSMUSG00000112767.1	Gm47532	ENSMUSG00000112767.1	ENSMUST00000218916.1	lincRNA	chr10:113424184-113446080
chr10	113537597	113538030	-	L1_Mus4	LINE	L1	chr10	113538022	113538024	+	ENSMUST00000219362.1,ENSMUSG00000112750.1	Gm47534	ENSMUSG00000112750.1	ENSMUST00000219362.1	processed_pseudogene	chr10:113538023-113538491
chr10	114801336	114801392	+	(TTC)n	Simple_repeat	Simple_repeat	chr10	114801363	114801365	-	ENSMUST00000061632.7,ENSMUSG00000050663.7	Trhde	ENSMUSG00000050663.7	ENSMUST00000061632.7	protein_coding	chr10:114398823-114801364
chr10	114801336	114801392	+	(TTC)n	Simple_repeat	Simple_repeat	chr10	114801369	114801371	-	ENSMUST00000152282.1,ENSMUSG00000050663.7	Trhde	ENSMUSG00000050663.7	ENSMUST00000152282.1	protein_coding	chr10:114787494-114801370
chr10	114802305	114802379	+	(TG)n	Simple_repeat	Simple_repeat	chr10	114802306	114802308	-	ENSMUST00000152702.1,ENSMUSG00000050663.7	Trhde	ENSMUSG00000050663.7	ENSMUST00000152702.1	protein_coding	chr10:114566167-114802307
chr10	114874910	114875186	+	RLTR51B_Mm	LTR	ERVK?	chr10	114875006	114875008	+	ENSMUST00000219061.1,ENSMUSG00000111883.1	Gm31182	ENSMUSG00000111883.1	ENSMUST00000219061.1	lincRNA	chr10:114875007-114885131
chr10	114911022	114911164	+	B1_Mus2	SINE	Alu	chr10	114911034	114911036	-	ENSMUST00000122552.1,ENSMUSG00000084501.1	Gm25319	ENSMUSG00000084501.1	ENSMUST00000122552.1	misc_RNA	chr10:114910711-114911035
chr10	114947920	114948023	+	RMER15	LTR	ERVL	chr10	114947930	114947932	+	ENSMUST00000218941.1,ENSMUSG00000112016.1	Gm31267	ENSMUSG00000112016.1	ENSMUST00000218941.1	lincRNA	chr10:114947931-114952835
chr10	114991540	114991647	+	U6	snRNA	snRNA	chr10	114991540	114991542	+	ENSMUST00000178475.1,ENSMUSG00000096208.1	Gm22070	ENSMUSG00000096208.1	ENSMUST00000178475.1	snRNA	chr10:114991541-114991647
chr10	116531638	116531761	-	B1_Mur4	SINE	Alu	chr10	116531739	116531741	-	ENSMUST00000176664.1,ENSMUSG00000093404.1	Gm25190	ENSMUSG00000093404.1	ENSMUST00000176664.1	miRNA	chr10:116531646-116531740
chr10	116674396	116674758	+	ORR1B2	LTR	ERVL-MaLR	chr10	116674590	116674592	+	ENSMUST00000181656.1,ENSMUSG00000097104.1	Gm26579	ENSMUSG00000097104.1	ENSMUST00000181656.1	lincRNA	chr10:116674591-116679303
chr10	116950453	116950490	+	GC_rich	Low_complexity	Low_complexity	chr10	116950452	116950454	-	ENSMUST00000218391.1,ENSMUSG00000064181.6	Rab3ip	ENSMUSG00000064181.6	ENSMUST00000218391.1	protein_coding	chr10:116939255-116950453
chr10	116965700	116965840	+	IMPB_01	Satellite	Satellite	chr10	116965754	116965756	+	ENSMUST00000176045.7,ENSMUSG00000031294.9	D630029K05Rik	ENSMUSG00000031294.9	ENSMUST00000176045.7	lincRNA	chr10:116965755-116967712
chr10	117177594	117177705	+	RMER17B	LTR	ERVK	chr10	117177631	117177633	+	ENSMUST00000219785.1,ENSMUSG00000112753.1	4930423D24Rik	ENSMUSG00000112753.1	ENSMUST00000219785.1	lincRNA	chr10:117177632-117181112
chr10	117183408	117183451	+	(TTAG)n	Simple_repeat	Simple_repeat	chr10	117183410	117183412	-	ENSMUST00000157772.1,ENSMUSG00000088397.1	Gm26311	ENSMUSG00000088397.1	ENSMUST00000157772.1	snoRNA	chr10:117183335-117183411
chr10	117363201	117363389	-	B2_Mm2	SINE	B2	chr10	117363232	117363234	-	ENSMUST00000176567.1,ENSMUSG00000055531.12	Cpsf6	ENSMUSG00000055531.12	ENSMUST00000176567.1	protein_coding	chr10:117358892-117363233
chr10	117379804	117380142	-	MT2B1	LTR	ERVL	chr10	117380014	117380016	-	ENSMUST00000175924.1,ENSMUSG00000055531.12	Cpsf6	ENSMUSG00000055531.12	ENSMUST00000175924.1	protein_coding	chr10:117366178-117380015
chr10	117589305	117589395	-	B1_Mus2	SINE	Alu	chr10	117589334	117589336	-	ENSMUST00000218739.1,ENSMUSG00000112081.1	Gm9004	ENSMUSG00000112081.1	ENSMUST00000218739.1	processed_pseudogene	chr10:117588114-117589335
chr10	117614529	117614741	+	RMER17C	LTR	ERVK	chr10	117614628	117614630	+	ENSMUST00000217828.1,ENSMUSG00000112476.1	Gm32365	ENSMUSG00000112476.1	ENSMUST00000217828.1	lincRNA	chr10:117614629-117617102
chr10	117662281	117662388	-	U6	snRNA	snRNA	chr10	117662387	117662389	-	ENSMUST00000178844.1,ENSMUSG00000096357.1	Gm25709	ENSMUSG00000096357.1	ENSMUST00000178844.1	snRNA	chr10:117662282-117662388
chr10	117710290	117710402	+	C-rich	Low_complexity	Low_complexity	chr10	117710291	117710293	-	ENSMUST00000147823.1,ENSMUSG00000020184.15	Mdm2	ENSMUSG00000020184.15	ENSMUST00000147823.1	protein_coding	chr10:117702259-117710292
chr10	117925439	117925481	+	B3	SINE	B2	chr10	117925458	117925460	+	ENSMUST00000217950.1,ENSMUSG00000112500.1	4933411E08Rik	ENSMUSG00000112500.1	ENSMUST00000217950.1	lincRNA	chr10:117925459-117948292
chr10	118164807	118165305	-	MLTR31FA_MM	LTR	ERVK	chr10	118165161	118165163	-	ENSMUST00000219046.1,ENSMUSG00000112684.1	Gm47958	ENSMUSG00000112684.1	ENSMUST00000219046.1	antisense	chr10:118163985-118165162
chr10	118233495	118233750	-	L1_Mus3	LINE	L1	chr10	118233530	118233532	-	ENSMUST00000219681.1,ENSMUSG00000112002.1	Gm9585	ENSMUSG00000112002.1	ENSMUST00000219681.1	processed_pseudogene	chr10:118232128-118233531
chr10	118265717	118265972	+	L1_Mus3	LINE	L1	chr10	118265936	118265938	+	ENSMUST00000218318.1,ENSMUSG00000112561.1	Gm9035	ENSMUSG00000112561.1	ENSMUST00000218318.1	processed_pseudogene	chr10:118265937-118267633
chr10	118715689	118716233	+	RMER19B2	LTR	ERVK	chr10	118715725	118715727	-	ENSMUST00000219594.1,ENSMUSG00000112029.1	Gm33337	ENSMUSG00000112029.1	ENSMUST00000219594.1	lincRNA	chr10:118714481-118715726
chr10	118883413	118883751	+	MTD	LTR	ERVL-MaLR	chr10	118883653	118883655	-	ENSMUST00000220184.1,ENSMUSG00000112402.1	Gm10744	ENSMUSG00000112402.1	ENSMUST00000220184.1	TEC	chr10:118880949-118883654
chr10	119020879	119021718	-	RMER19B	LTR	ERVK	chr10	119021669	119021671	-	ENSMUST00000217840.1,ENSMUSG00000112540.1	Gm47461	ENSMUSG00000112540.1	ENSMUST00000217840.1	lincRNA	chr10:119018346-119021670
chr10	119092798	119093112	-	RMER2	LTR	ERV1	chr10	119092904	119092906	+	ENSMUST00000187551.1,ENSMUSG00000100681.1	1700064J06Rik	ENSMUSG00000100681.1	ENSMUST00000187551.1	lincRNA	chr10:119092905-119103107
chr10	119111548	119111785	+	MTD	LTR	ERVL-MaLR	chr10	119111623	119111625	+	ENSMUST00000220151.1,ENSMUSG00000112609.1	Gm47480	ENSMUSG00000112609.1	ENSMUST00000220151.1	lincRNA	chr10:119111624-119122966
chr10	119320123	119320245	+	RLTR16C_MM	LTR	ERVK	chr10	119320233	119320235	+	ENSMUST00000218762.1,ENSMUSG00000112155.1	4930477N07Rik	ENSMUSG00000112155.1	ENSMUST00000218762.1	lincRNA	chr10:119320234-119331862
chr10	119320216	119320329	+	BGLII_B	LTR	ERVK	chr10	119320233	119320235	+	ENSMUST00000218762.1,ENSMUSG00000112155.1	4930477N07Rik	ENSMUSG00000112155.1	ENSMUST00000218762.1	lincRNA	chr10:119320234-119331862
chr10	119410913	119411244	+	ORR1E	LTR	ERVL-MaLR	chr10	119411221	119411223	-	ENSMUST00000217825.1,ENSMUSG00000111972.1	Gm40778	ENSMUSG00000111972.1	ENSMUST00000217825.1	TEC	chr10:119409879-119411222
chr10	119413167	119413488	-	RLTR10D	LTR	ERVK	chr10	119413443	119413445	+	ENSMUST00000185238.1,ENSMUSG00000100558.1	1700025F24Rik	ENSMUSG00000100558.1	ENSMUST00000185238.1	lincRNA	chr10:119413444-119426864
chr10	119523612	119524306	-	L1MB7	LINE	L1	chr10	119523837	119523839	+	ENSMUST00000220254.1,ENSMUSG00000112243.1	Gm47342	ENSMUSG00000112243.1	ENSMUST00000220254.1	TEC	chr10:119523838-119524458
chr10	119617514	119617843	-	ORR1A2	LTR	ERVL-MaLR	chr10	119617719	119617721	-	ENSMUST00000218599.1,ENSMUSG00000112555.1	Gm47027	ENSMUSG00000112555.1	ENSMUST00000218599.1	antisense	chr10:119600363-119617720
chr10	119852235	119852400	-	RMER15	LTR	ERVL	chr10	119852389	119852391	-	ENSMUST00000126965.1,ENSMUSG00000085418.1	Grip1os1	ENSMUSG00000085418.1	ENSMUST00000126965.1	antisense	chr10:119825204-119852390
chr10	119852235	119852400	-	RMER15	LTR	ERVL	chr10	119852276	119852278	-	ENSMUST00000135940.1,ENSMUSG00000085418.1	Grip1os1	ENSMUSG00000085418.1	ENSMUST00000135940.1	antisense	chr10:119847175-119852277
chr10	120202569	120202913	-	ORR1F	LTR	ERVL-MaLR	chr10	120202650	120202652	+	ENSMUST00000135794.1,ENSMUSG00000020225.10	Tmbim4	ENSMUSG00000020225.10	ENSMUST00000135794.1	protein_coding	chr10:120202651-120203208
chr10	120287257	120287473	-	ORR1A2	LTR	ERVL-MaLR	chr10	120287271	120287273	-	ENSMUST00000219089.1,ENSMUSG00000112672.1	Gm48118	ENSMUSG00000112672.1	ENSMUST00000219089.1	processed_pseudogene	chr10:120287078-120287272
chr10	120389387	120389567	+	(GGAGA)n	Simple_repeat	Simple_repeat	chr10	120389522	120389524	+	ENSMUST00000161291.1,ENSMUSG00000090191.1	9230105E05Rik	ENSMUSG00000090191.1	ENSMUST00000161291.1	antisense	chr10:120389523-120392793
chr10	120447834	120448119	-	Eulor5A	DNA?	DNA?	chr10	120448109	120448111	-	ENSMUST00000103249.1,ENSMUSG00000076448.1	Mir763	ENSMUSG00000076448.1	ENSMUST00000103249.1	miRNA	chr10:120447991-120448110
chr10	120766026	120766103	-	MT2B2	LTR	ERVL	chr10	120766027	120766029	-	ENSMUST00000219156.1,ENSMUSG00000111907.1	Gm48202	ENSMUSG00000111907.1	ENSMUST00000219156.1	lincRNA	chr10:120760821-120766028
chr10	120800641	120800808	-	B4	SINE	B4	chr10	120800676	120800678	+	ENSMUST00000156090.2,ENSMUSG00000086444.2	Gm15961	ENSMUSG00000086444.2	ENSMUST00000156090.2	antisense	chr10:120800677-120801794
chr10	120974297	120974444	+	B1_Mus2	SINE	Alu	chr10	120974424	120974426	-	ENSMUST00000175289.1,ENSMUSG00000093030.1	Gm23632	ENSMUSG00000093030.1	ENSMUST00000175289.1	miRNA	chr10:120974301-120974425
chr10	121000876	121001274	-	MTB_Mm	LTR	ERVL-MaLR	chr10	121001060	121001062	-	ENSMUST00000219168.1,ENSMUSG00000112192.1	Gm48341	ENSMUSG00000112192.1	ENSMUST00000219168.1	lincRNA	chr10:120984756-121001061
chr10	121202400	121202823	-	RLTR20A2B_MM	LTR	ERVK	chr10	121202648	121202650	-	ENSMUST00000219710.1,ENSMUSG00000112846.1	4930432O09Rik	ENSMUSG00000112846.1	ENSMUST00000219710.1	lincRNA	chr10:121199141-121202649
chr10	121242789	121243010	-	MIR	SINE	MIR	chr10	121243001	121243003	+	ENSMUST00000219186.1,ENSMUSG00000112871.1	Gm35404	ENSMUSG00000112871.1	ENSMUST00000219186.1	lincRNA	chr10:121243002-121243843
chr10	121383108	121383281	+	B3A	SINE	B2	chr10	121383114	121383116	+	ENSMUST00000219216.1,ENSMUSG00000034707.7	Gns	ENSMUSG00000034707.7	ENSMUST00000219216.1	protein_coding	chr10:121383115-121397249
chr10	121462665	121463093	+	RMER19B	LTR	ERVK	chr10	121462693	121462695	-	ENSMUST00000220023.1,ENSMUSG00000112009.1	Gm48591	ENSMUSG00000112009.1	ENSMUST00000220023.1	sense_intronic	chr10:121423664-121462694
chr10	121506463	121506678	-	ID_B1	SINE	B4	chr10	121506622	121506624	+	ENSMUST00000220364.1,ENSMUSG00000112527.1	Gm35696	ENSMUSG00000112527.1	ENSMUST00000220364.1	lincRNA	chr10:121506623-121526101
chr10	121618441	121618588	+	B1_Mur3	SINE	Alu	chr10	121618542	121618544	-	ENSMUST00000175100.1,ENSMUSG00000092841.1	Gm24330	ENSMUSG00000092841.1	ENSMUST00000175100.1	miRNA	chr10:121618468-121618543
chr10	122089381	122089534	-	MER20	DNA	hAT-Charlie	chr10	122089388	122089390	-	ENSMUST00000125506.1,ENSMUSG00000034620.17	Rxylt1	ENSMUSG00000034620.17	ENSMUST00000125506.1	protein_coding	chr10:122081682-122089389
chr10	122386867	122386912	+	AmnSINE1	SINE	Deu	chr10	122386891	122386893	+	ENSMUST00000218971.1,ENSMUSG00000112774.1	Gm36041	ENSMUSG00000112774.1	ENSMUST00000218971.1	lincRNA	chr10:122386892-122435033
chr10	122546308	122546706	-	ORR1B1	LTR	ERVL-MaLR	chr10	122546497	122546499	-	ENSMUST00000218285.1,ENSMUSG00000112873.1	Gm48877	ENSMUSG00000112873.1	ENSMUST00000218285.1	antisense	chr10:122405113-122546498
chr10	122755952	122757347	+	RLTR17D_Mm	LTR	ERVK	chr10	122757197	122757199	+	ENSMUST00000160315.1,ENSMUSG00000034613.12	Ppm1h	ENSMUSG00000034613.12	ENSMUST00000160315.1	protein_coding	chr10:122757198-122811471
chr10	122777871	122778211	-	ORR1A2	LTR	ERVL-MaLR	chr10	122778064	122778066	-	ENSMUST00000218987.1,ENSMUSG00000111957.1	Gm47582	ENSMUSG00000111957.1	ENSMUST00000218987.1	TEC	chr10:122777480-122778065
chr10	122985826	122985846	+	(TCCC)n	Simple_repeat	Simple_repeat	chr10	122985830	122985832	-	ENSMUST00000220378.1,ENSMUSG00000112237.1	D630033A02Rik	ENSMUSG00000112237.1	ENSMUST00000220378.1	transcribed_processed_pseudogene	chr10:122985074-122985831
chr10	123015140	123015174	+	AT_rich	Low_complexity	Low_complexity	chr10	123015155	123015157	-	ENSMUST00000219241.1,ENSMUSG00000034602.15	Mon2	ENSMUSG00000034602.15	ENSMUST00000219241.1	protein_coding	chr10:123013325-123015156
chr10	123027215	123028425	+	RLTR21	LTR	ERVK	chr10	123027459	123027461	-	ENSMUST00000220201.1,ENSMUSG00000034602.15	Mon2	ENSMUSG00000034602.15	ENSMUST00000220201.1	protein_coding	chr10:123026079-123027460
chr10	123196933	123196959	+	(CGG)n	Simple_repeat	Simple_repeat	chr10	123196952	123196954	-	ENSMUST00000020334.8,ENSMUSG00000020124.10	Usp15	ENSMUSG00000020124.10	ENSMUST00000020334.8	protein_coding	chr10:123111736-123196953
chr10	123196933	123196959	+	(CGG)n	Simple_repeat	Simple_repeat	chr10	123196940	123196942	-	ENSMUST00000220284.1,ENSMUSG00000020124.10	Usp15	ENSMUSG00000020124.10	ENSMUST00000220284.1	protein_coding	chr10:123152360-123196941
chr10	123196987	123197008	+	GC_rich	Low_complexity	Low_complexity	chr10	123196994	123196996	-	ENSMUST00000220377.1,ENSMUSG00000020124.10	Usp15	ENSMUSG00000020124.10	ENSMUST00000220377.1	protein_coding	chr10:123105006-123196995
chr10	123432565	123432618	+	U2	snRNA	snRNA	chr10	123432565	123432567	+	ENSMUST00000122512.1,ENSMUSG00000084461.1	Gm22958	ENSMUSG00000084461.1	ENSMUST00000122512.1	snRNA	chr10:123432566-123432749
chr10	123891898	123892871	-	Lx5	LINE	L1	chr10	123891897	123891899	-	ENSMUST00000219335.1,ENSMUSG00000112603.1	Gm18510	ENSMUSG00000112603.1	ENSMUST00000219335.1	processed_pseudogene	chr10:123890803-123891898
chr10	124455056	124455272	+	7SK	RNA	RNA	chr10	124455058	124455060	+	ENSMUST00000158994.1,ENSMUSG00000089619.1	Gm23777	ENSMUSG00000089619.1	ENSMUST00000158994.1	misc_RNA	chr10:124455059-124455317
chr10	124995768	124996529	+	RMER17A	LTR	ERVK	chr10	124995982	124995984	+	ENSMUST00000219518.1,ENSMUSG00000112283.1	Gm36719	ENSMUSG00000112283.1	ENSMUST00000219518.1	lincRNA	chr10:124995983-125019801
chr10	125328867	125329069	-	B4A	SINE	B4	chr10	125328962	125328964	-	ENSMUST00000211781.1,ENSMUSG00000020102.15	Slc16a7	ENSMUSG00000020102.15	ENSMUST00000211781.1	protein_coding	chr10:125219270-125328963
chr10	125389423	125389523	+	G-rich	Low_complexity	Low_complexity	chr10	125389464	125389466	-	ENSMUST00000210780.1,ENSMUSG00000020102.15	Slc16a7	ENSMUSG00000020102.15	ENSMUST00000210780.1	protein_coding	chr10:125227485-125389465
chr10	126011527	126011666	+	B3A	SINE	B2	chr10	126011630	126011632	+	ENSMUST00000218580.1,ENSMUSG00000020105.9	Lrig3	ENSMUSG00000020105.9	ENSMUST00000218580.1	protein_coding	chr10:126011631-126015234
chr10	127288834	127288855	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	127288852	127288854	-	ENSMUST00000156208.1,ENSMUSG00000025409.14	Mbd6	ENSMUSG00000025409.14	ENSMUST00000156208.1	protein_coding	chr10:127286568-127288853
chr10	127289018	127289041	+	GC_rich	Low_complexity	Low_complexity	chr10	127289017	127289019	-	ENSMUST00000119078.7,ENSMUSG00000025409.14	Mbd6	ENSMUSG00000025409.14	ENSMUST00000119078.7	protein_coding	chr10:127281956-127289018
chr10	127321944	127322019	+	(CA)n	Simple_repeat	Simple_repeat	chr10	127321963	127321965	+	ENSMUST00000219511.1,ENSMUSG00000040345.10	Arhgap9	ENSMUSG00000040345.10	ENSMUST00000219511.1	protein_coding	chr10:127321964-127329788
chr10	127324054	127324325	+	MLTR14	LTR	ERV1	chr10	127324322	127324324	+	ENSMUST00000218656.1,ENSMUSG00000040345.10	Arhgap9	ENSMUSG00000040345.10	ENSMUST00000218656.1	protein_coding	chr10:127324323-127329943
chr10	127380655	127380789	+	C-rich	Low_complexity	Low_complexity	chr10	127380661	127380663	+	ENSMUST00000166820.7,ENSMUSG00000025404.15	R3hdm2	ENSMUSG00000025404.15	ENSMUST00000166820.7	protein_coding	chr10:127380662-127499360
chr10	127404308	127404392	-	U6	snRNA	snRNA	chr10	127404391	127404393	-	ENSMUST00000158744.1,ENSMUSG00000089369.1	Gm23819	ENSMUSG00000089369.1	ENSMUST00000158744.1	snRNA	chr10:127404284-127404392
chr10	127534477	127534651	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr10	127534558	127534560	-	ENSMUST00000095266.2,ENSMUSG00000040258.6	Nxph4	ENSMUSG00000040258.6	ENSMUST00000095266.2	protein_coding	chr10:127525473-127534559
chr10	127659371	127659405	+	(TC)n	Simple_repeat	Simple_repeat	chr10	127659399	127659401	+	ENSMUST00000145470.1,ENSMUSG00000002147.18	Stat6	ENSMUSG00000002147.18	ENSMUST00000145470.1	protein_coding	chr10:127659400-127660187
chr10	127739431	127739547	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr10	127739537	127739539	+	ENSMUST00000054287.8,ENSMUSG00000044617.8	Zbtb39	ENSMUSG00000044617.8	ENSMUST00000054287.8	protein_coding	chr10:127739538-127747349
chr10	127920819	127921078	+	MTD	LTR	ERVL-MaLR	chr10	127921068	127921070	+	ENSMUST00000137042.2,ENSMUSG00000085993.2	Gm15905	ENSMUSG00000085993.2	ENSMUST00000137042.2	processed_pseudogene	chr10:127921069-127921366
chr10	128000595	128000714	-	MT2A	LTR	ERVL	chr10	128000677	128000679	-	ENSMUST00000026462.6,ENSMUSG00000025396.7	Hsd17b6	ENSMUSG00000025396.7	ENSMUST00000026462.6	protein_coding	chr10:127990941-128000678
chr10	128007359	128007807	-	MLT2B3	LTR	ERVL	chr10	128007507	128007509	-	ENSMUST00000219447.1,ENSMUSG00000025396.7	Hsd17b6	ENSMUSG00000025396.7	ENSMUST00000219447.1	protein_coding	chr10:127990936-128007508
chr10	128007359	128007807	-	MLT2B3	LTR	ERVL	chr10	128007610	128007612	-	ENSMUST00000219183.1,ENSMUSG00000025396.7	Hsd17b6	ENSMUSG00000025396.7	ENSMUST00000219183.1	protein_coding	chr10:127990938-128007611
chr10	128007359	128007807	-	MLT2B3	LTR	ERVL	chr10	128007593	128007595	-	ENSMUST00000219707.1,ENSMUSG00000025396.7	Hsd17b6	ENSMUSG00000025396.7	ENSMUST00000219707.1	protein_coding	chr10:127994492-128007594
chr10	128007359	128007807	-	MLT2B3	LTR	ERVL	chr10	128007593	128007595	-	ENSMUST00000219953.1,ENSMUSG00000025396.7	Hsd17b6	ENSMUSG00000025396.7	ENSMUST00000219953.1	protein_coding	chr10:127997707-128007594
chr10	128007359	128007807	-	MLT2B3	LTR	ERVL	chr10	128007578	128007580	-	ENSMUST00000219780.1,ENSMUSG00000025396.7	Hsd17b6	ENSMUSG00000025396.7	ENSMUST00000219780.1	protein_coding	chr10:127997842-128007579
chr10	128087668	128087694	+	B1_Mur3	SINE	Alu	chr10	128087680	128087682	+	ENSMUST00000144918.1,ENSMUSG00000025393.12	Atp5b	ENSMUSG00000025393.12	ENSMUST00000144918.1	protein_coding	chr10:128087681-128089051
chr10	128092742	128092842	+	GC_rich	Low_complexity	Low_complexity	chr10	128092782	128092784	+	ENSMUST00000219072.1,ENSMUSG00000040054.16	Baz2a	ENSMUSG00000040054.16	ENSMUST00000219072.1	protein_coding	chr10:128092783-128119325
chr10	128092742	128092842	+	GC_rich	Low_complexity	Low_complexity	chr10	128092782	128092784	+	ENSMUST00000045621.8,ENSMUSG00000040054.16	Baz2a	ENSMUSG00000040054.16	ENSMUST00000045621.8	protein_coding	chr10:128092783-128129303
chr10	128092742	128092842	+	GC_rich	Low_complexity	Low_complexity	chr10	128092782	128092784	+	ENSMUST00000170054.8,ENSMUSG00000040054.16	Baz2a	ENSMUSG00000040054.16	ENSMUST00000170054.8	protein_coding	chr10:128092783-128129303
chr10	128176466	128176557	+	G-rich	Low_complexity	Low_complexity	chr10	128176478	128176480	-	ENSMUST00000092033.3,ENSMUSG00000040043.16	Rbms2	ENSMUSG00000040043.16	ENSMUST00000092033.3	protein_coding	chr10:128133107-128176479
chr10	128203235	128203290	+	ID_B1	SINE	B4	chr10	128203255	128203257	+	ENSMUST00000134461.1,ENSMUSG00000044005.13	Gls2	ENSMUSG00000044005.13	ENSMUST00000134461.1	protein_coding	chr10:128203256-128204191
chr10	128299420	128299524	-	U6	snRNA	snRNA	chr10	128299523	128299525	-	ENSMUST00000083014.1,ENSMUSG00000064948.1	Gm23241	ENSMUSG00000064948.1	ENSMUST00000083014.1	snRNA	chr10:128299419-128299524
chr10	128365375	128365570	-	ID_B1	SINE	B4	chr10	128365403	128365405	-	ENSMUST00000219934.1,ENSMUSG00000039914.6	Coq10a	ENSMUSG00000039914.6	ENSMUST00000219934.1	protein_coding	chr10:128364106-128365404
chr10	128377110	128377190	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	128377114	128377116	+	ENSMUST00000167990.1,ENSMUSG00000014498.9	Ankrd52	ENSMUSG00000014498.9	ENSMUST00000167990.1	protein_coding	chr10:128377115-128385496
chr10	128377110	128377190	+	(CCG)n	Simple_repeat	Simple_repeat	chr10	128377118	128377120	+	ENSMUST00000014642.9,ENSMUSG00000014498.9	Ankrd52	ENSMUSG00000014498.9	ENSMUST00000014642.9	protein_coding	chr10:128377119-128394006
chr10	128382803	128382885	-	L2	LINE	L2	chr10	128382837	128382839	+	ENSMUST00000184999.1,ENSMUSG00000098701.1	Mir6914	ENSMUSG00000098701.1	ENSMUST00000184999.1	miRNA	chr10:128382838-128382906
chr10	128410550	128410659	+	MT2B	LTR	ERVL	chr10	128410550	128410552	-	ENSMUST00000164664.7,ENSMUSG00000025374.13	Nabp2	ENSMUSG00000025374.13	ENSMUST00000164664.7	protein_coding	chr10:128401910-128410551
chr10	128459203	128459311	+	G-rich	Low_complexity	Low_complexity	chr10	128459247	128459249	+	ENSMUST00000218228.1,ENSMUSG00000025369.15	Smarcc2	ENSMUSG00000025369.15	ENSMUST00000218228.1	protein_coding	chr10:128459248-128490482
chr10	128459203	128459311	+	G-rich	Low_complexity	Low_complexity	chr10	128459293	128459295	+	ENSMUST00000026433.8,ENSMUSG00000025369.15	Smarcc2	ENSMUSG00000025369.15	ENSMUST00000026433.8	protein_coding	chr10:128459294-128490172
chr10	128459203	128459311	+	G-rich	Low_complexity	Low_complexity	chr10	128459307	128459309	+	ENSMUST00000099131.10,ENSMUSG00000025369.15	Smarcc2	ENSMUSG00000025369.15	ENSMUST00000099131.10	protein_coding	chr10:128459308-128490122
chr10	128495472	128495571	+	PB1D11	SINE	Alu	chr10	128495555	128495557	-	ENSMUST00000218250.1,ENSMUSG00000039824.4	Myl6b	ENSMUSG00000039824.4	ENSMUST00000218250.1	protein_coding	chr10:128494314-128495556
chr10	128518549	128518568	+	AT_rich	Low_complexity	Low_complexity	chr10	128518553	128518555	-	ENSMUST00000218092.1,ENSMUSG00000025366.8	Esyt1	ENSMUSG00000025366.8	ENSMUST00000218092.1	protein_coding	chr10:128514191-128518554
chr10	128565932	128565993	+	(CGAG)n	Simple_repeat	Simple_repeat	chr10	128565933	128565935	-	ENSMUST00000026425.12,ENSMUSG00000025364.13	Pa2g4	ENSMUSG00000025364.13	ENSMUST00000026425.12	protein_coding	chr10:128557766-128565934
chr10	128565932	128565993	+	(CGAG)n	Simple_repeat	Simple_repeat	chr10	128565986	128565988	-	ENSMUST00000131728.3,ENSMUSG00000025364.13	Pa2g4	ENSMUSG00000025364.13	ENSMUST00000131728.3	protein_coding	chr10:128557768-128565987
chr10	128645987	128646036	+	(TG)n	Simple_repeat	Simple_repeat	chr10	128645990	128645992	-	ENSMUST00000133342.9,ENSMUSG00000002578.17	Ikzf4	ENSMUSG00000002578.17	ENSMUST00000133342.9	protein_coding	chr10:128630843-128645991
chr10	128696254	128696291	+	(TCC)n	Simple_repeat	Simple_repeat	chr10	128696263	128696265	-	ENSMUST00000000727.3,ENSMUSG00000000711.3	Rab5b	ENSMUSG00000000711.3	ENSMUST00000000727.3	protein_coding	chr10:128677175-128696264
chr10	128696254	128696291	+	(TCC)n	Simple_repeat	Simple_repeat	chr10	128696256	128696258	-	ENSMUST00000220593.1,ENSMUSG00000000711.3	Rab5b	ENSMUSG00000000711.3	ENSMUST00000220593.1	protein_coding	chr10:128681803-128696257
chr10	128891707	128891823	+	G-rich	Low_complexity	Low_complexity	chr10	128891717	128891719	-	ENSMUST00000026408.6,ENSMUSG00000025352.6	Gdf11	ENSMUSG00000025352.6	ENSMUST00000026408.6	protein_coding	chr10:128882295-128891718
chr10	128908779	128908829	+	(GA)n	Simple_repeat	Simple_repeat	chr10	128908819	128908821	+	ENSMUST00000105229.8,ENSMUSG00000025351.14	Cd63	ENSMUSG00000025351.14	ENSMUST00000105229.8	protein_coding	chr10:128908820-128912822
chr10	128914594	128914773	-	B3A	SINE	B2	chr10	128914622	128914624	-	ENSMUST00000139217.1,ENSMUSG00000025350.15	Rdh5	ENSMUSG00000025350.15	ENSMUST00000139217.1	protein_coding	chr10:128913846-128914623
chr10	128922822	128922919	-	MIR3	SINE	MIR	chr10	128922887	128922889	-	ENSMUST00000135161.1,ENSMUSG00000025350.15	Rdh5	ENSMUSG00000025350.15	ENSMUST00000135161.1	protein_coding	chr10:128918420-128922888
chr10	128951337	128951474	-	B1_Mur3	SINE	Alu	chr10	128951425	128951427	+	ENSMUST00000219897.1,ENSMUSG00000025348.9	Itga7	ENSMUSG00000025348.9	ENSMUST00000219897.1	protein_coding	chr10:128951426-128955268
chr10	128970840	128971236	+	L1M4	LINE	L1	chr10	128971196	128971198	+	ENSMUST00000181142.1,ENSMUSG00000097691.1	9030616G12Rik	ENSMUSG00000097691.1	ENSMUST00000181142.1	lincRNA	chr10:128971197-128978115
chr10	129172636	129172877	-	7SK	RNA	RNA	chr10	129172876	129172878	-	ENSMUST00000122783.1,ENSMUSG00000084732.1	Gm25807	ENSMUSG00000084732.1	ENSMUST00000122783.1	misc_RNA	chr10:129172573-129172877
chr10	129500708	129500825	+	L1MA9	LINE	L1	chr10	129500812	129500814	+	ENSMUST00000056002.4,ENSMUSG00000044025.6	Olfr790	ENSMUSG00000044025.6	ENSMUST00000056002.4	protein_coding	chr10:129500813-129501882
chr10	129500708	129500825	+	L1MA9	LINE	L1	chr10	129500812	129500814	+	ENSMUST00000218901.1,ENSMUSG00000044025.6	Olfr790	ENSMUSG00000044025.6	ENSMUST00000218901.1	protein_coding	chr10:129500813-129501882
chr10	129582581	129583097	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr10	129582894	129582896	-	ENSMUST00000103776.1,ENSMUSG00000076964.1	Gm23252	ENSMUSG00000076964.1	ENSMUST00000103776.1	miRNA	chr10:129582786-129582895
chr10	129729239	129729382	+	Lx9	LINE	L1	chr10	129729360	129729362	-	ENSMUST00000216794.1,ENSMUSG00000096858.4	Olfr805	ENSMUSG00000096858.4	ENSMUST00000216794.1	protein_coding	chr10:129721221-129729361
chr10	129729239	129729382	+	Lx9	LINE	L1	chr10	129729374	129729376	-	ENSMUST00000217219.1,ENSMUSG00000096858.4	Olfr805	ENSMUSG00000096858.4	ENSMUST00000217219.1	protein_coding	chr10:129721221-129729375
chr10	129729239	129729382	+	Lx9	LINE	L1	chr10	129729291	129729293	-	ENSMUST00000204717.2,ENSMUSG00000096858.4	Olfr805	ENSMUSG00000096858.4	ENSMUST00000204717.2	protein_coding	chr10:129723401-129729292
chr10	129733181	129733576	+	MTA_Mm	LTR	ERVL-MaLR	chr10	129733231	129733233	+	ENSMUST00000178283.1,ENSMUSG00000094702.1	Gm24485	ENSMUSG00000094702.1	ENSMUST00000178283.1	miRNA	chr10:129733232-129733298
chr10	129879831	129879912	+	B1F1	SINE	Alu	chr10	129879850	129879852	-	ENSMUST00000216966.1,ENSMUSG00000059134.2	Olfr814	ENSMUSG00000059134.2	ENSMUST00000216966.1	protein_coding	chr10:129871473-129879851
chr10	129879831	129879912	+	B1F1	SINE	Alu	chr10	129879850	129879852	-	ENSMUST00000213742.1,ENSMUSG00000059134.2	Olfr814	ENSMUSG00000059134.2	ENSMUST00000213742.1	protein_coding	chr10:129871473-129879851
chr10	129905847	129905928	+	B1F1	SINE	Alu	chr10	129905866	129905868	-	ENSMUST00000216182.1,ENSMUSG00000061961.3	Olfr815	ENSMUSG00000061961.3	ENSMUST00000216182.1	protein_coding	chr10:129900570-129905867
chr10	130129991	130130121	+	MER5B	DNA	hAT-Charlie	chr10	130129999	130130001	-	ENSMUST00000214192.1,ENSMUSG00000095804.2	Olfr824	ENSMUSG00000095804.2	ENSMUST00000214192.1	protein_coding	chr10:130123470-130130000
chr11	3125929	3125956	+	(CAAG)n	Simple_repeat	Simple_repeat	chr11	3125935	3125937	+	ENSMUST00000132408.7,ENSMUSG00000082286.10	Pisd-ps1	ENSMUSG00000082286.10	ENSMUST00000132408.7	transcribed_unprocessed_pseudogene	chr11:3125936-3129209
chr11	3176382	3176475	-	PB1	SINE	Alu	chr11	3176465	3176467	-	ENSMUST00000143442.1,ENSMUSG00000023764.18	Sfi1	ENSMUSG00000023764.18	ENSMUST00000143442.1	protein_coding	chr11:3160035-3176466
chr11	3194176	3194292	+	RSINE1	SINE	B4	chr11	3194262	3194264	-	ENSMUST00000146218.1,ENSMUSG00000086049.1	Gm12735	ENSMUSG00000086049.1	ENSMUST00000146218.1	antisense	chr11:3193516-3194263
chr11	3202732	3202786	+	GC_rich	Low_complexity	Low_complexity	chr11	3202733	3202735	+	ENSMUST00000125637.7,ENSMUSG00000020454.17	Eif4enif1	ENSMUSG00000020454.17	ENSMUST00000125637.7	protein_coding	chr11:3202734-3220530
chr11	3354868	3354918	+	(TAAA)n	Simple_repeat	Simple_repeat	chr11	3354910	3354912	-	ENSMUST00000142322.1,ENSMUSG00000087055.1	Gm11948	ENSMUSG00000087055.1	ENSMUST00000142322.1	sense_intronic	chr11:3353573-3354911
chr11	3356172	3356320	+	L2	LINE	L2	chr11	3356202	3356204	-	ENSMUST00000123689.1,ENSMUSG00000020451.17	Limk2	ENSMUSG00000020451.17	ENSMUST00000123689.1	protein_coding	chr11:3353408-3356203
chr11	3488907	3489059	+	MIRc	SINE	MIR	chr11	3488989	3488991	+	ENSMUST00000151860.1,ENSMUSG00000034579.17	Pla2g3	ENSMUSG00000034579.17	ENSMUST00000151860.1	protein_coding	chr11:3488990-3494163
chr11	3534193	3534342	-	B1_Mur3	SINE	Alu	chr11	3534237	3534239	+	ENSMUST00000125275.1,ENSMUSG00000084962.1	Gm11947	ENSMUSG00000084962.1	ENSMUST00000125275.1	processed_transcript	chr11:3534238-3534907
chr11	3628711	3628825	+	MLT1A1	LTR	ERVL-MaLR	chr11	3628823	3628825	+	ENSMUST00000121615.1,ENSMUSG00000084310.1	Gm11950	ENSMUSG00000084310.1	ENSMUST00000121615.1	processed_pseudogene	chr11:3628824-3629661
chr11	3647507	3647538	+	(A)n	Simple_repeat	Simple_repeat	chr11	3647535	3647537	-	ENSMUST00000132077.3,ENSMUSG00000056579.18	Tug1	ENSMUSG00000056579.18	ENSMUST00000132077.3	antisense	chr11:3639785-3647536
chr11	3647507	3647538	+	(A)n	Simple_repeat	Simple_repeat	chr11	3647529	3647531	-	ENSMUST00000153313.8,ENSMUSG00000056579.18	Tug1	ENSMUSG00000056579.18	ENSMUST00000153313.8	antisense	chr11:3639794-3647530
chr11	3648786	3648821	+	GC_rich	Low_complexity	Low_complexity	chr11	3648811	3648813	-	ENSMUST00000144852.1,ENSMUSG00000056579.18	Tug1	ENSMUSG00000056579.18	ENSMUST00000144852.1	antisense	chr11:3639794-3648812
chr11	3656660	3656791	-	U4	snRNA	snRNA	chr11	3656790	3656792	-	ENSMUST00000157625.1,ENSMUSG00000088250.1	Gm26393	ENSMUSG00000088250.1	ENSMUST00000157625.1	snRNA	chr11:3656663-3656791
chr11	3863887	3863995	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr11	3863902	3863904	-	ENSMUST00000070552.13,ENSMUSG00000020435.17	Osbp2	ENSMUSG00000020435.17	ENSMUST00000070552.13	protein_coding	chr11:3703731-3863903
chr11	3863887	3863995	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr11	3863902	3863904	-	ENSMUST00000135250.1,ENSMUSG00000020435.17	Osbp2	ENSMUSG00000020435.17	ENSMUST00000135250.1	protein_coding	chr11:3724402-3863903
chr11	4135126	4135211	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	4135201	4135203	+	ENSMUST00000003677.10,ENSMUSG00000003581.14	Rnf215	ENSMUSG00000003581.14	ENSMUST00000003677.10	protein_coding	chr11:4135202-4141172
chr11	4324148	4324255	-	U6	snRNA	snRNA	chr11	4324254	4324256	-	ENSMUST00000083693.1,ENSMUSG00000065627.1	Gm24803	ENSMUSG00000065627.1	ENSMUST00000083693.1	snRNA	chr11:4324149-4324255
chr11	4435674	4435966	+	L1MB4	LINE	L1	chr11	4435753	4435755	-	ENSMUST00000124249.1,ENSMUSG00000020419.11	Hormad2	ENSMUSG00000020419.11	ENSMUST00000124249.1	protein_coding	chr11:4427314-4435754
chr11	4493170	4493348	-	B3A	SINE	B2	chr11	4493317	4493319	-	ENSMUST00000144242.1,ENSMUSG00000034354.17	Mtmr3	ENSMUSG00000034354.17	ENSMUST00000144242.1	protein_coding	chr11:4491807-4493318
chr11	4561767	4561944	-	B2_Mm2	SINE	B2	chr11	4561779	4561781	+	ENSMUST00000181063.1,ENSMUSG00000081974.3	Gm11960	ENSMUSG00000081974.3	ENSMUST00000181063.1	transcribed_processed_pseudogene	chr11:4561780-4564637
chr11	4627727	4627806	+	MIR3	SINE	MIR	chr11	4627765	4627767	-	ENSMUST00000135775.7,ENSMUSG00000056288.11	Gm11961	ENSMUSG00000056288.11	ENSMUST00000135775.7	antisense	chr11:4620275-4627766
chr11	4824911	4825077	+	B4	SINE	B4	chr11	4824920	4824922	-	ENSMUST00000167480.1,ENSMUSG00000009073.16	Nf2	ENSMUSG00000009073.16	ENSMUST00000167480.1	protein_coding	chr11:4818505-4824921
chr11	4915168	4915317	-	B1_Mus2	SINE	Alu	chr11	4915305	4915307	+	ENSMUST00000155872.1,ENSMUSG00000034274.11	Thoc5	ENSMUSG00000034274.11	ENSMUST00000155872.1	protein_coding	chr11:4915306-4920485
chr11	5065243	5065279	+	GC_rich	Low_complexity	Low_complexity	chr11	5065276	5065278	-	ENSMUST00000109895.1,ENSMUSG00000034201.13	Gas2l1	ENSMUSG00000034201.13	ENSMUST00000109895.1	protein_coding	chr11:5060381-5065277
chr11	5065243	5065279	+	GC_rich	Low_complexity	Low_complexity	chr11	5065277	5065279	-	ENSMUST00000152257.1,ENSMUSG00000034201.13	Gas2l1	ENSMUSG00000034201.13	ENSMUST00000152257.1	protein_coding	chr11:5063873-5065278
chr11	5072167	5072302	+	B1_Mus2	SINE	Alu	chr11	5072219	5072221	-	ENSMUST00000130060.1,ENSMUSG00000009079.16	Ewsr1	ENSMUSG00000009079.16	ENSMUST00000130060.1	protein_coding	chr11:5070690-5072220
chr11	5251849	5251954	+	U6	snRNA	snRNA	chr11	5251849	5251851	+	ENSMUST00000082698.1,ENSMUSG00000064632.1	Gm25142	ENSMUSG00000064632.1	ENSMUST00000082698.1	snRNA	chr11:5251850-5251956
chr11	5261542	5261563	+	GC_rich	Low_complexity	Low_complexity	chr11	5261557	5261559	-	ENSMUST00000020662.14,ENSMUSG00000020393.16	Kremen1	ENSMUSG00000020393.16	ENSMUST00000020662.14	protein_coding	chr11:5191552-5261558
chr11	5520942	5521035	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	5521004	5521006	+	ENSMUST00000145588.1,ENSMUSG00000020484.18	Xbp1	ENSMUSG00000020484.18	ENSMUST00000145588.1	protein_coding	chr11:5521005-5524026
chr11	5818091	5818599	-	RLTR19	LTR	ERVK	chr11	5818582	5818584	-	ENSMUST00000119907.1,ENSMUSG00000080904.1	Gm11966	ENSMUSG00000080904.1	ENSMUST00000119907.1	processed_pseudogene	chr11:5818497-5818583
chr11	5873187	5873239	+	(TG)n	Simple_repeat	Simple_repeat	chr11	5873190	5873192	-	ENSMUST00000141907.1,ENSMUSG00000020471.11	Pold2	ENSMUSG00000020471.11	ENSMUST00000141907.1	protein_coding	chr11:5872188-5873191
chr11	6065652	6065695	+	GC_rich	Low_complexity	Low_complexity	chr11	6065657	6065659	-	ENSMUST00000129098.1,ENSMUSG00000057897.14	Camk2b	ENSMUSG00000057897.14	ENSMUST00000129098.1	protein_coding	chr11:6011665-6065658
chr11	6273310	6273426	+	5S	rRNA	rRNA	chr11	6273310	6273312	+	ENSMUST00000104336.1,ENSMUSG00000077524.1	n-R5s67	ENSMUSG00000077524.1	ENSMUST00000104336.1	rRNA	chr11:6273311-6273424
chr11	6292489	6292691	-	LTR31	LTR	ERV1	chr11	6292604	6292606	+	ENSMUST00000081894.4,ENSMUSG00000020456.17	Ogdh	ENSMUSG00000020456.17	ENSMUST00000081894.4	protein_coding	chr11:6292605-6356592
chr11	6389008	6389089	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr11	6389073	6389075	+	ENSMUST00000109787.7,ENSMUSG00000041164.15	Zmiz2	ENSMUSG00000041164.15	ENSMUST00000109787.7	protein_coding	chr11:6389074-6406158
chr11	6389386	6389489	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	6389470	6389472	+	ENSMUST00000109786.7,ENSMUSG00000041164.15	Zmiz2	ENSMUSG00000041164.15	ENSMUST00000109786.7	protein_coding	chr11:6389471-6406158
chr11	6401588	6401672	+	PB1D10	SINE	Alu	chr11	6401629	6401631	+	ENSMUST00000184154.1,ENSMUSG00000098516.1	Mir7651	ENSMUSG00000098516.1	ENSMUST00000184154.1	miRNA	chr11:6401630-6401693
chr11	6508632	6508987	+	MTD	LTR	ERVL-MaLR	chr11	6508684	6508686	-	ENSMUST00000134639.1,ENSMUSG00000020437.12	Myo1g	ENSMUSG00000020437.12	ENSMUST00000134639.1	protein_coding	chr11:6507869-6508685
chr11	6515382	6515532	+	B1_Mur3	SINE	Alu	chr11	6515499	6515501	-	ENSMUST00000131823.1,ENSMUSG00000020437.12	Myo1g	ENSMUSG00000020437.12	ENSMUST00000131823.1	protein_coding	chr11:6514503-6515500
chr11	6546864	6546930	+	GC_rich	Low_complexity	Low_complexity	chr11	6546886	6546888	+	ENSMUST00000000388.14,ENSMUSG00000000378.15	Ccm2	ENSMUSG00000000378.15	ENSMUST00000000388.14	protein_coding	chr11:6546887-6596744
chr11	6546864	6546930	+	GC_rich	Low_complexity	Low_complexity	chr11	6546909	6546911	+	ENSMUST00000159007.7,ENSMUSG00000000378.15	Ccm2	ENSMUSG00000000378.15	ENSMUST00000159007.7	protein_coding	chr11:6546910-6589474
chr11	6560128	6560380	+	MER47A	DNA	TcMar-Tigger	chr11	6560182	6560184	+	ENSMUST00000109722.8,ENSMUSG00000000378.15	Ccm2	ENSMUSG00000000378.15	ENSMUST00000109722.8	protein_coding	chr11:6560183-6596734
chr11	6592997	6593070	-	L3	LINE	CR1	chr11	6593047	6593049	+	ENSMUST00000161667.1,ENSMUSG00000000378.15	Ccm2	ENSMUSG00000000378.15	ENSMUST00000161667.1	protein_coding	chr11:6593048-6594269
chr11	6637454	6637507	+	(CAAAC)n	Simple_repeat	Simple_repeat	chr11	6637465	6637467	-	ENSMUST00000141868.1,ENSMUSG00000000381.10	Wap	ENSMUSG00000000381.10	ENSMUST00000141868.1	protein_coding	chr11:6635482-6637466
chr11	6637454	6637507	+	(CAAAC)n	Simple_repeat	Simple_repeat	chr11	6637454	6637456	-	ENSMUST00000127341.1,ENSMUSG00000000381.10	Wap	ENSMUSG00000000381.10	ENSMUST00000127341.1	protein_coding	chr11:6635539-6637455
chr11	6658723	6658743	+	(C)n	Simple_repeat	Simple_repeat	chr11	6658725	6658727	-	ENSMUST00000143152.1,ENSMUSG00000086373.8	Gm11978	ENSMUSG00000086373.8	ENSMUST00000143152.1	transcribed_processed_pseudogene	chr11:6651144-6658726
chr11	6719874	6720316	+	RMER17B	LTR	ERVK	chr11	6720036	6720038	-	ENSMUST00000139769.1,ENSMUSG00000086808.1	Gm11981	ENSMUSG00000086808.1	ENSMUST00000139769.1	processed_transcript	chr11:6716001-6720037
chr11	7063381	7063585	+	GC_rich	Low_complexity	Low_complexity	chr11	7063488	7063490	+	ENSMUST00000020706.4,ENSMUSG00000020431.5	Adcy1	ENSMUSG00000020431.5	ENSMUST00000020706.4	protein_coding	chr11:7063489-7178506
chr11	7886312	7887294	-	RLTR25B	LTR	ERVK	chr11	7886504	7886506	-	ENSMUST00000157263.2,ENSMUSG00000098853.1	Gm27393	ENSMUSG00000098853.1	ENSMUST00000157263.2	snRNA	chr11:7886444-7886505
chr11	8885082	8885677	+	RLTR19-int	LTR	ERVK	chr11	8885295	8885297	-	ENSMUST00000119652.1,ENSMUSG00000082095.1	Gm11991	ENSMUSG00000082095.1	ENSMUST00000119652.1	processed_pseudogene	chr11:8884223-8885296
chr11	9132894	9133102	-	Tigger7	DNA	TcMar-Tigger	chr11	9133014	9133016	+	ENSMUST00000146696.1,ENSMUSG00000020407.13	Upp1	ENSMUSG00000020407.13	ENSMUST00000146696.1	protein_coding	chr11:9133015-9136082
chr11	9193445	9193578	+	ID_B1	SINE	B4	chr11	9193450	9193452	+	ENSMUST00000151522.1,ENSMUSG00000004668.14	Abca13	ENSMUSG00000004668.14	ENSMUST00000151522.1	protein_coding	chr11:9193451-9256178
chr11	10376738	10377977	-	L1_Mus3	LINE	L1	chr11	10377081	10377083	-	ENSMUST00000118697.1,ENSMUSG00000084045.1	Gm11997	ENSMUSG00000084045.1	ENSMUST00000118697.1	processed_pseudogene	chr11:10376770-10377082
chr11	11140513	11140593	+	5S	rRNA	rRNA	chr11	11140513	11140515	+	ENSMUST00000158236.1,ENSMUSG00000088861.1	Gm23065	ENSMUSG00000088861.1	ENSMUST00000158236.1	rRNA	chr11:11140514-11140643
chr11	11626692	11631494	+	L1Md_F2	LINE	L1	chr11	11627823	11627825	-	ENSMUST00000081896.4,ENSMUSG00000062511.6	4930512M02Rik	ENSMUSG00000062511.6	ENSMUST00000081896.4	protein_coding	chr11:11589223-11627824
chr11	11626692	11631494	+	L1Md_F2	LINE	L1	chr11	11627834	11627836	-	ENSMUST00000149910.1,ENSMUSG00000062511.6	4930512M02Rik	ENSMUSG00000062511.6	ENSMUST00000149910.1	protein_coding	chr11:11623711-11627835
chr11	12054169	12054303	-	U1	snRNA	snRNA	chr11	12054302	12054304	-	ENSMUST00000082868.1,ENSMUSG00000064802.1	Gm24036	ENSMUSG00000064802.1	ENSMUST00000082868.1	snRNA	chr11:12054148-12054303
chr11	12054303	12054385	+	MER5A	DNA	hAT-Charlie	chr11	12054302	12054304	-	ENSMUST00000082868.1,ENSMUSG00000064802.1	Gm24036	ENSMUSG00000064802.1	ENSMUST00000082868.1	snRNA	chr11:12054148-12054303
chr11	12411953	12412320	-	MTD	LTR	ERVL-MaLR	chr11	12412143	12412145	-	ENSMUST00000174874.7,ENSMUSG00000020173.17	Cobl	ENSMUSG00000020173.17	ENSMUST00000174874.7	protein_coding	chr11:12236678-12412144
chr11	12464934	12465072	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr11	12464956	12464958	-	ENSMUST00000046755.13,ENSMUSG00000020173.17	Cobl	ENSMUSG00000020173.17	ENSMUST00000046755.13	protein_coding	chr11:12236676-12464957
chr11	12464934	12465072	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr11	12464959	12464961	-	ENSMUST00000109651.8,ENSMUSG00000020173.17	Cobl	ENSMUSG00000020173.17	ENSMUST00000109651.8	protein_coding	chr11:12236678-12464960
chr11	14722467	14722617	-	B2_Mm2	SINE	B2	chr11	14722616	14722618	+	ENSMUST00000120978.1,ENSMUSG00000083427.1	Gm12007	ENSMUSG00000083427.1	ENSMUST00000120978.1	processed_pseudogene	chr11:14722617-14723213
chr11	15412299	15412406	+	U6	snRNA	snRNA	chr11	15412299	15412301	+	ENSMUST00000082812.1,ENSMUSG00000064746.1	Gm24707	ENSMUSG00000064746.1	ENSMUST00000082812.1	snRNA	chr11:15412300-15412406
chr11	16037429	16037807	-	L1_Mus3	LINE	L1	chr11	16037792	16037794	+	ENSMUST00000193500.1,ENSMUSG00000104323.1	Gm37319	ENSMUSG00000104323.1	ENSMUST00000193500.1	TEC	chr11:16037793-16038428
chr11	16645408	16645675	-	MT2C_Mm	LTR	ERVL	chr11	16645537	16645539	-	ENSMUST00000102382.1,ENSMUSG00000076337.1	Gm24714	ENSMUSG00000076337.1	ENSMUST00000102382.1	miRNA	chr11:16645438-16645538
chr11	16732604	16732711	-	U6	snRNA	snRNA	chr11	16732710	16732712	-	ENSMUST00000082897.1,ENSMUSG00000064831.1	Gm25698	ENSMUSG00000064831.1	ENSMUST00000082897.1	snRNA	chr11:16732605-16732711
chr11	17159262	17159297	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	17159262	17159264	+	ENSMUST00000102880.4,ENSMUSG00000033953.10	Ppp3r1	ENSMUSG00000033953.10	ENSMUST00000102880.4	protein_coding	chr11:17159263-17200375
chr11	17192629	17192876	+	Tigger5	DNA	TcMar-Tigger	chr11	17192843	17192845	+	ENSMUST00000154425.1,ENSMUSG00000033953.10	Ppp3r1	ENSMUSG00000033953.10	ENSMUST00000154425.1	protein_coding	chr11:17192844-17195109
chr11	17548285	17548518	+	7SK	RNA	RNA	chr11	17548285	17548287	+	ENSMUST00000157208.1,ENSMUSG00000087833.1	Gm23959	ENSMUSG00000087833.1	ENSMUST00000157208.1	misc_RNA	chr11:17548286-17548609
chr11	18095708	18096111	-	RMER17B	LTR	ERVK	chr11	18095985	18095987	+	ENSMUST00000150694.1,ENSMUSG00000085453.1	Gm12018	ENSMUSG00000085453.1	ENSMUST00000150694.1	lincRNA	chr11:18095986-18103384
chr11	18710205	18710325	-	RMER17C2	LTR	ERVK	chr11	18710221	18710223	-	ENSMUST00000145182.1,ENSMUSG00000085806.1	Gm12023	ENSMUSG00000085806.1	ENSMUST00000145182.1	lincRNA	chr11:18595248-18710222
chr11	18737345	18738698	+	Lx6	LINE	L1	chr11	18738694	18738696	+	ENSMUST00000083450.1,ENSMUSG00000065384.1	Gm23093	ENSMUSG00000065384.1	ENSMUST00000083450.1	snRNA	chr11:18738695-18738796
chr11	18859985	18860299	-	MLT1B	LTR	ERVL-MaLR	chr11	18860114	18860116	-	ENSMUST00000156831.1,ENSMUSG00000085743.1	8430419K02Rik	ENSMUSG00000085743.1	ENSMUST00000156831.1	processed_transcript	chr11:18853939-18860115
chr11	18872129	18872219	+	(GA)n	Simple_repeat	Simple_repeat	chr11	18872154	18872156	-	ENSMUST00000128654.1,ENSMUSG00000085743.1	8430419K02Rik	ENSMUSG00000085743.1	ENSMUST00000128654.1	processed_transcript	chr11:18845851-18872155
chr11	19065072	19066512	+	Lx7	LINE	L1	chr11	19065275	19065277	+	ENSMUST00000144854.1,ENSMUSG00000086025.1	4933406G16Rik	ENSMUSG00000086025.1	ENSMUST00000144854.1	lincRNA	chr11:19065276-19075740
chr11	19360872	19364189	-	L1_Mus3	LINE	L1	chr11	19361068	19361070	-	ENSMUST00000117768.1,ENSMUSG00000081054.1	Gm12025	ENSMUSG00000081054.1	ENSMUST00000117768.1	processed_pseudogene	chr11:19360926-19361069
chr11	19627987	19628202	+	B3	SINE	B2	chr11	19628060	19628062	-	ENSMUST00000146531.1,ENSMUSG00000086911.1	Gm12027	ENSMUSG00000086911.1	ENSMUST00000146531.1	lincRNA	chr11:19626761-19628061
chr11	19693151	19697398	-	L1Md_F2	LINE	L1	chr11	19693297	19693299	-	ENSMUST00000158585.1,ENSMUSG00000089210.1	Gm23386	ENSMUSG00000089210.1	ENSMUST00000158585.1	scaRNA	chr11:19693155-19693298
chr11	20146310	20146371	+	B1_Mus1	SINE	Alu	chr11	20146343	20146345	-	ENSMUST00000156150.1,ENSMUSG00000085035.1	Gm12031	ENSMUSG00000085035.1	ENSMUST00000156150.1	lincRNA	chr11:20145567-20146344
chr11	20146333	20146415	-	B1_Mur3	SINE	Alu	chr11	20146343	20146345	-	ENSMUST00000156150.1,ENSMUSG00000085035.1	Gm12031	ENSMUSG00000085035.1	ENSMUST00000156150.1	lincRNA	chr11:20145567-20146344
chr11	20194734	20194906	-	ID_B1	SINE	B4	chr11	20194734	20194736	-	ENSMUST00000122493.1,ENSMUSG00000084442.1	Gm26253	ENSMUSG00000084442.1	ENSMUST00000122493.1	snRNA	chr11:20194633-20194735
chr11	20201569	20201620	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	20201601	20201603	+	ENSMUST00000163483.1,ENSMUSG00000020149.17	Rab1a	ENSMUSG00000020149.17	ENSMUST00000163483.1	protein_coding	chr11:20201602-20226856
chr11	20201569	20201620	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	20201608	20201610	+	ENSMUST00000152728.1,ENSMUSG00000020149.17	Rab1a	ENSMUSG00000020149.17	ENSMUST00000152728.1	protein_coding	chr11:20201609-20223572
chr11	20692774	20692903	-	RSINE1	SINE	B4	chr11	20692801	20692803	-	ENSMUST00000134841.1,ENSMUSG00000049659.15	Aftph	ENSMUSG00000049659.15	ENSMUST00000134841.1	protein_coding	chr11:20685981-20692802
chr11	20831022	20831068	+	GC_rich	Low_complexity	Low_complexity	chr11	20831055	20831057	-	ENSMUST00000047028.8,ENSMUSG00000042363.14	Lgalsl	ENSMUSG00000042363.14	ENSMUST00000047028.8	protein_coding	chr11:20823576-20831056
chr11	20831022	20831068	+	GC_rich	Low_complexity	Low_complexity	chr11	20831055	20831057	-	ENSMUST00000154300.7,ENSMUSG00000042363.14	Lgalsl	ENSMUSG00000042363.14	ENSMUST00000154300.7	protein_coding	chr11:20829312-20831056
chr11	20831022	20831068	+	GC_rich	Low_complexity	Low_complexity	chr11	20831021	20831023	-	ENSMUST00000132928.1,ENSMUSG00000042363.14	Lgalsl	ENSMUSG00000042363.14	ENSMUST00000132928.1	protein_coding	chr11:20829797-20831022
chr11	20937573	20937711	+	B1_Mus1	SINE	Alu	chr11	20937700	20937702	-	ENSMUST00000178821.1,ENSMUSG00000096061.1	Gm23681	ENSMUSG00000096061.1	ENSMUST00000178821.1	miRNA	chr11:20937576-20937701
chr11	21135302	21135611	-	L1MDa	LINE	L1	chr11	21135468	21135470	+	ENSMUST00000101477.1,ENSMUSG00000020134.13	Peli1	ENSMUSG00000020134.13	ENSMUST00000101477.1	protein_coding	chr11:21135469-21150323
chr11	21197805	21197986	-	7SK	RNA	RNA	chr11	21197975	21197977	-	ENSMUST00000157598.1,ENSMUSG00000088223.1	Gm22600	ENSMUSG00000088223.1	ENSMUST00000157598.1	misc_RNA	chr11:21197708-21197976
chr11	21239209	21239290	+	GC_rich	Low_complexity	Low_complexity	chr11	21239280	21239282	+	ENSMUST00000109578.7,ENSMUSG00000020128.15	Vps54	ENSMUSG00000020128.15	ENSMUST00000109578.7	protein_coding	chr11:21239281-21321122
chr11	21239209	21239290	+	GC_rich	Low_complexity	Low_complexity	chr11	21239280	21239282	+	ENSMUST00000006221.13,ENSMUSG00000020128.15	Vps54	ENSMUSG00000020128.15	ENSMUST00000006221.13	protein_coding	chr11:21239281-21321136
chr11	21312466	21312516	+	(TG)n	Simple_repeat	Simple_repeat	chr11	21312504	21312506	+	ENSMUST00000153411.1,ENSMUSG00000020128.15	Vps54	ENSMUSG00000020128.15	ENSMUST00000153411.1	protein_coding	chr11:21312505-21314993
chr11	21451353	21451613	+	MER2	DNA	TcMar-Tigger	chr11	21451353	21451355	-	ENSMUST00000120335.1,ENSMUSG00000084412.1	Gm12044	ENSMUSG00000084412.1	ENSMUST00000120335.1	processed_pseudogene	chr11:21451142-21451354
chr11	21564642	21564664	+	RLTR17B_Mm	LTR	ERVK	chr11	21564648	21564650	-	ENSMUST00000175427.1,ENSMUSG00000093168.1	Gm22990	ENSMUSG00000093168.1	ENSMUST00000175427.1	miRNA	chr11:21564561-21564649
chr11	22439587	22439982	-	MTA_Mm	LTR	ERVL-MaLR	chr11	22439774	22439776	-	ENSMUST00000127483.1,ENSMUSG00000085856.1	Gm12050	ENSMUSG00000085856.1	ENSMUST00000127483.1	lincRNA	chr11:22438821-22439775
chr11	22483547	22483645	+	RMER16	LTR	ERVK	chr11	22483607	22483609	+	ENSMUST00000147771.1,ENSMUSG00000085021.1	Gm12051	ENSMUSG00000085021.1	ENSMUST00000147771.1	lincRNA	chr11:22483608-22491363
chr11	22732830	22733674	-	RMER15-int	LTR	ERVL	chr11	22732985	22732987	-	ENSMUST00000143643.1,ENSMUSG00000085979.1	Gm12055	ENSMUSG00000085979.1	ENSMUST00000143643.1	lincRNA	chr11:22729897-22732986
chr11	22733675	22734299	+	RLTR34C_MM	LTR	ERVK	chr11	22734037	22734039	+	ENSMUST00000148364.1,ENSMUSG00000085803.1	Gm12056	ENSMUSG00000085803.1	ENSMUST00000148364.1	lincRNA	chr11:22734038-22737937
chr11	22839203	22839332	-	ID_B1	SINE	B4	chr11	22839298	22839300	+	ENSMUST00000174690.1,ENSMUSG00000092455.1	Gm20456	ENSMUSG00000092455.1	ENSMUST00000174690.1	processed_transcript	chr11:22839299-22842604
chr11	22868900	22868979	+	U6	snRNA	snRNA	chr11	22868900	22868902	+	ENSMUST00000083935.1,ENSMUSG00000065869.1	Gm24917	ENSMUSG00000065869.1	ENSMUST00000083935.1	snRNA	chr11:22868901-22869004
chr11	22956790	22957363	-	RMER1B	Other	Other	chr11	22956946	22956948	-	ENSMUST00000161944.1,ENSMUSG00000051355.18	Commd1	ENSMUSG00000051355.18	ENSMUST00000161944.1	protein_coding	chr11:22899835-22956947
chr11	22978936	22979043	+	PB1D9	SINE	Alu	chr11	22978995	22978997	-	ENSMUST00000057843.11,ENSMUSG00000051355.18	Commd1	ENSMUSG00000051355.18	ENSMUST00000057843.11	protein_coding	chr11:22899764-22978996
chr11	22995563	22995705	-	B1_Mus1	SINE	Alu	chr11	22995623	22995625	+	ENSMUST00000174746.1,ENSMUSG00000007739.10	Cct4	ENSMUSG00000007739.10	ENSMUST00000174746.1	protein_coding	chr11:22995624-22997101
chr11	23013168	23013503	-	L2a	LINE	L2	chr11	23013386	23013388	+	ENSMUST00000058269.8,ENSMUSG00000049811.16	Fam161a	ENSMUSG00000049811.16	ENSMUST00000058269.8	protein_coding	chr11:23013387-23023731
chr11	23256042	23256114	+	(CAG)n	Simple_repeat	Simple_repeat	chr11	23256054	23256056	+	ENSMUST00000102870.7,ENSMUSG00000020290.14	Xpo1	ENSMUSG00000020290.14	ENSMUST00000102870.7	protein_coding	chr11:23256055-23296233
chr11	23256042	23256114	+	(CAG)n	Simple_repeat	Simple_repeat	chr11	23256057	23256059	+	ENSMUST00000149371.1,ENSMUSG00000020290.14	Xpo1	ENSMUSG00000020290.14	ENSMUST00000149371.1	protein_coding	chr11:23256058-23282726
chr11	23256042	23256114	+	(CAG)n	Simple_repeat	Simple_repeat	chr11	23256077	23256079	+	ENSMUST00000102869.7,ENSMUSG00000020290.14	Xpo1	ENSMUSG00000020290.14	ENSMUST00000102869.7	protein_coding	chr11:23256078-23298249
chr11	23256556	23256605	+	T-rich	Low_complexity	Low_complexity	chr11	23256588	23256590	+	ENSMUST00000136235.1,ENSMUSG00000020290.14	Xpo1	ENSMUSG00000020290.14	ENSMUST00000136235.1	protein_coding	chr11:23256589-23267714
chr11	23306749	23306912	+	C-rich	Low_complexity	Low_complexity	chr11	23306894	23306896	+	ENSMUST00000180046.7,ENSMUSG00000056342.16	Usp34	ENSMUSG00000056342.16	ENSMUST00000180046.7	protein_coding	chr11:23306895-23490560
chr11	23414943	23415204	+	B4A	SINE	B4	chr11	23414975	23414977	+	ENSMUST00000155984.1,ENSMUSG00000056342.16	Usp34	ENSMUSG00000056342.16	ENSMUST00000155984.1	protein_coding	chr11:23414976-23420652
chr11	23479562	23479667	-	U6	snRNA	snRNA	chr11	23479666	23479668	-	ENSMUST00000083657.1,ENSMUSG00000065591.1	Gm22753	ENSMUSG00000065591.1	ENSMUST00000083657.1	snRNA	chr11:23479561-23479667
chr11	23479667	23479702	-	Lx2B2	LINE	L1	chr11	23479666	23479668	-	ENSMUST00000083657.1,ENSMUSG00000065591.1	Gm22753	ENSMUSG00000065591.1	ENSMUST00000083657.1	snRNA	chr11:23479561-23479667
chr11	23497955	23498061	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	23498029	23498031	-	ENSMUST00000020529.12,ENSMUSG00000020288.13	Ahsa2	ENSMUSG00000020288.13	ENSMUST00000020529.12	protein_coding	chr11:23488547-23498030
chr11	23519919	23520250	-	MLT1A1	LTR	ERVL-MaLR	chr11	23519941	23519943	-	ENSMUST00000169264.7,ENSMUSG00000020286.12	1700093K21Rik	ENSMUSG00000020286.12	ENSMUST00000169264.7	protein_coding	chr11:23516203-23519942
chr11	23519919	23520250	-	MLT1A1	LTR	ERVL-MaLR	chr11	23519941	23519943	-	ENSMUST00000140122.1,ENSMUSG00000020286.12	1700093K21Rik	ENSMUSG00000020286.12	ENSMUST00000140122.1	protein_coding	chr11:23518788-23519942
chr11	23558814	23559946	-	L1_Mur2	LINE	L1	chr11	23558841	23558843	-	ENSMUST00000125204.1,ENSMUSG00000085415.1	Selenok-ps1	ENSMUSG00000085415.1	ENSMUST00000125204.1	processed_transcript	chr11:23558058-23558842
chr11	23776901	23777047	-	U1	snRNA	snRNA	chr11	23777046	23777048	-	ENSMUST00000157116.1,ENSMUSG00000087741.1	Gm23827	ENSMUSG00000087741.1	ENSMUST00000157116.1	snRNA	chr11:23776903-23777047
chr11	24078129	24078173	+	(TC)n	Simple_repeat	Simple_repeat	chr11	24078146	24078148	+	ENSMUST00000124148.1,ENSMUSG00000000861.15	Bcl11a	ENSMUSG00000000861.15	ENSMUST00000124148.1	protein_coding	chr11:24078147-24090906
chr11	24078129	24078173	+	(TC)n	Simple_repeat	Simple_repeat	chr11	24078172	24078174	+	ENSMUST00000109514.7,ENSMUSG00000000861.15	Bcl11a	ENSMUSG00000000861.15	ENSMUST00000109514.7	protein_coding	chr11:24078173-24168429
chr11	24080616	24080679	+	C-rich	Low_complexity	Low_complexity	chr11	24080669	24080671	+	ENSMUST00000118955.1,ENSMUSG00000000861.15	Bcl11a	ENSMUSG00000000861.15	ENSMUST00000118955.1	protein_coding	chr11:24080670-24173558
chr11	24679542	24679735	+	MER53	DNA	hAT	chr11	24679710	24679712	-	ENSMUST00000116981.1,ENSMUSG00000080631.1	Gm25507	ENSMUSG00000080631.1	ENSMUST00000116981.1	miRNA	chr11:24679568-24679711
chr11	25329760	25330032	-	B4A	SINE	B4	chr11	25329956	25329958	+	ENSMUST00000044347.10,ENSMUSG00000033015.16	4933427E13Rik	ENSMUSG00000033015.16	ENSMUST00000044347.10	lincRNA	chr11:25329957-25358187
chr11	25648024	25648177	+	B1_Mur2	SINE	Alu	chr11	25648146	25648148	-	ENSMUST00000153834.7,ENSMUSG00000032985.15	5730522E02Rik	ENSMUSG00000032985.15	ENSMUST00000153834.7	protein_coding	chr11:25602763-25648147
chr11	26081284	26081606	+	Lx8	LINE	L1	chr11	26081599	26081601	-	ENSMUST00000135168.1,ENSMUSG00000032985.15	5730522E02Rik	ENSMUSG00000032985.15	ENSMUST00000135168.1	protein_coding	chr11:25849297-26081600
chr11	26337539	26337703	-	U1	snRNA	snRNA	chr11	26337702	26337704	-	ENSMUST00000083955.1,ENSMUSG00000065889.1	Gm22868	ENSMUSG00000065889.1	ENSMUST00000083955.1	snRNA	chr11:26337540-26337703
chr11	27084851	27085133	-	Lx2	LINE	L1	chr11	27085125	27085127	+	ENSMUST00000122639.1,ENSMUSG00000084588.1	n-R5s68	ENSMUSG00000084588.1	ENSMUST00000122639.1	rRNA	chr11:27085126-27085207
chr11	28681563	28681619	+	G-rich	Low_complexity	Low_complexity	chr11	28681563	28681565	+	ENSMUST00000146554.1,ENSMUSG00000084966.1	2810471M01Rik	ENSMUSG00000084966.1	ENSMUST00000146554.1	lincRNA	chr11:28681564-28693276
chr11	28853159	28853218	+	CT-rich	Low_complexity	Low_complexity	chr11	28853203	28853205	+	ENSMUST00000020759.11,ENSMUSG00000020467.15	Efemp1	ENSMUSG00000020467.15	ENSMUST00000020759.11	protein_coding	chr11:28853204-28926743
chr11	29595550	29595999	+	RMER20B	LTR	ERVK	chr11	29595786	29595788	+	ENSMUST00000137364.1,ENSMUSG00000086707.1	Gm12088	ENSMUSG00000086707.1	ENSMUST00000137364.1	lincRNA	chr11:29595787-29597700
chr11	29751398	29751644	+	L1MB4	LINE	L1	chr11	29751464	29751466	-	ENSMUST00000142651.1,ENSMUSG00000044072.14	Eml6	ENSMUSG00000044072.14	ENSMUST00000142651.1	protein_coding	chr11:29746649-29751465
chr11	29825656	29825732	+	RMER17C	LTR	ERVK	chr11	29825667	29825669	-	ENSMUST00000104962.1,ENSMUSG00000078157.1	4931440F15Rik	ENSMUSG00000078157.1	ENSMUST00000104962.1	protein_coding	chr11:29822395-29825668
chr11	29849403	29849517	+	A-rich	Low_complexity	Low_complexity	chr11	29849460	29849462	+	ENSMUST00000157510.1,ENSMUSG00000088135.1	Gm22588	ENSMUSG00000088135.1	ENSMUST00000157510.1	snoRNA	chr11:29849461-29849600
chr11	30527238	30528295	-	Lx	LINE	L1	chr11	30528294	30528296	+	ENSMUST00000121149.1,ENSMUSG00000081712.1	Gm12096	ENSMUSG00000081712.1	ENSMUST00000121149.1	processed_pseudogene	chr11:30528295-30529401
chr11	30811457	30811618	+	ID_B1	SINE	B4	chr11	30811536	30811538	+	ENSMUST00000133430.1,ENSMUSG00000040850.17	Psme4	ENSMUSG00000040850.17	ENSMUST00000133430.1	protein_coding	chr11:30811537-30813729
chr11	30954123	30954275	+	(GGA)n	Simple_repeat	Simple_repeat	chr11	30954151	30954153	-	ENSMUST00000073192.13,ENSMUSG00000020311.17	Erlec1	ENSMUSG00000020311.17	ENSMUST00000073192.13	protein_coding	chr11:30930774-30954152
chr11	31119912	31120214	+	MurSatRep1	Unknown	Unknown	chr11	31120002	31120004	+	ENSMUST00000120846.1,ENSMUSG00000082049.1	Gm12105	ENSMUSG00000082049.1	ENSMUST00000120846.1	processed_pseudogene	chr11:31120003-31120781
chr11	31182266	31182496	-	MMSAT4	Satellite	Satellite	chr11	31182461	31182463	-	ENSMUST00000165626.1,ENSMUSG00000091195.1	Gm17332	ENSMUSG00000091195.1	ENSMUST00000165626.1	protein_coding	chr11:31182376-31182462
chr11	31183572	31184764	-	MurSatRep1	Unknown	Unknown	chr11	31184373	31184375	-	ENSMUST00000116006.2,ENSMUSG00000079890.2	Gm12106	ENSMUSG00000079890.2	ENSMUST00000116006.2	unprocessed_pseudogene	chr11:31177818-31184374
chr11	31671708	31671734	+	GC_rich	Low_complexity	Low_complexity	chr11	31671726	31671728	-	ENSMUST00000109415.1,ENSMUSG00000044502.16	Bod1	ENSMUSG00000044502.16	ENSMUST00000109415.1	protein_coding	chr11:31666487-31671727
chr11	31832604	31832685	+	MLT1K	LTR	ERVL-MaLR	chr11	31832659	31832661	+	ENSMUST00000132857.1,ENSMUSG00000086335.1	Gm12107	ENSMUSG00000086335.1	ENSMUST00000132857.1	lincRNA	chr11:31832660-31838214
chr11	32217290	32217431	+	B1_Mur2	SINE	Alu	chr11	32217316	32217318	-	ENSMUST00000143036.7,ENSMUSG00000020282.18	Rhbdf1	ENSMUSG00000020282.18	ENSMUST00000143036.7	protein_coding	chr11:32209586-32217317
chr11	32222250	32222272	+	GC_rich	Low_complexity	Low_complexity	chr11	32222258	32222260	-	ENSMUST00000144902.1,ENSMUSG00000020282.18	Rhbdf1	ENSMUSG00000020282.18	ENSMUST00000144902.1	protein_coding	chr11:32216009-32222259
chr11	32222294	32222346	+	GC_rich	Low_complexity	Low_complexity	chr11	32222299	32222301	-	ENSMUST00000020524.14,ENSMUSG00000020282.18	Rhbdf1	ENSMUSG00000020282.18	ENSMUST00000020524.14	protein_coding	chr11:32209585-32222300
chr11	32253997	32254132	-	B1F1	SINE	Alu	chr11	32254058	32254060	-	ENSMUST00000146890.7,ENSMUSG00000020289.15	Nprl3	ENSMUSG00000020289.15	ENSMUST00000146890.7	protein_coding	chr11:32239800-32254059
chr11	32347721	32347824	+	G-rich	Low_complexity	Low_complexity	chr11	32347819	32347821	+	ENSMUST00000038753.5,ENSMUSG00000040711.7	Sh3pxd2b	ENSMUSG00000040711.7	ENSMUST00000038753.5	protein_coding	chr11:32347820-32428173
chr11	32455213	32455453	+	G-rich	Low_complexity	Low_complexity	chr11	32455369	32455371	+	ENSMUST00000051053.4,ENSMUSG00000044949.4	Ubtd2	ENSMUSG00000044949.4	ENSMUST00000051053.4	protein_coding	chr11:32455370-32516687
chr11	32642869	32642890	+	GC_rich	Low_complexity	Low_complexity	chr11	32642874	32642876	+	ENSMUST00000076383.7,ENSMUSG00000020271.17	Fbxw11	ENSMUSG00000020271.17	ENSMUST00000076383.7	protein_coding	chr11:32642875-32746816
chr11	32984255	32984309	+	(TA)n	Simple_repeat	Simple_repeat	chr11	32984298	32984300	-	ENSMUST00000104646.2,ENSMUSG00000077836.2	Gm26052	ENSMUSG00000077836.2	ENSMUST00000104646.2	miRNA	chr11:32984216-32984299
chr11	33068248	33068740	+	MT2_Mm	LTR	ERVL	chr11	33068550	33068552	+	ENSMUST00000147896.1,ENSMUSG00000087318.1	Gm12114	ENSMUSG00000087318.1	ENSMUST00000147896.1	lincRNA	chr11:33068551-33080521
chr11	33598893	33599366	-	MER31A	LTR	ERV1	chr11	33599301	33599303	+	ENSMUST00000101371.2,ENSMUSG00000073052.3	D130052B06Rik	ENSMUSG00000073052.3	ENSMUST00000101371.2	protein_coding	chr11:33599302-33625618
chr11	33695624	33695986	+	ORR1F	LTR	ERVL-MaLR	chr11	33695893	33695895	+	ENSMUST00000136083.1,ENSMUSG00000085240.1	Gm12119	ENSMUSG00000085240.1	ENSMUST00000136083.1	antisense	chr11:33695894-33697908
chr11	34823909	34823991	+	GA-rich	Low_complexity	Low_complexity	chr11	34823950	34823952	-	ENSMUST00000148853.1,ENSMUSG00000069910.2	Spdl1	ENSMUSG00000069910.2	ENSMUST00000148853.1	protein_coding	chr11:34822041-34823951
chr11	34899016	34899123	+	U6	snRNA	snRNA	chr11	34899016	34899018	+	ENSMUST00000082643.1,ENSMUSG00000064577.1	Gm25799	ENSMUSG00000064577.1	ENSMUST00000082643.1	snRNA	chr11:34899017-34899123
chr11	35349865	35350259	+	MTA_Mm	LTR	ERVL-MaLR	chr11	35350068	35350070	+	ENSMUST00000124503.1,ENSMUSG00000086311.1	Gm12122	ENSMUSG00000086311.1	ENSMUST00000124503.1	sense_intronic	chr11:35350069-35350785
chr11	35821402	35821540	+	B1_Mur1	SINE	Alu	chr11	35821502	35821504	-	ENSMUST00000165817.1,ENSMUSG00000018848.4	Rars	ENSMUSG00000018848.4	ENSMUST00000165817.1	protein_coding	chr11:35817428-35821503
chr11	35825094	35825168	+	L2	LINE	L2	chr11	35825132	35825134	-	ENSMUST00000166122.1,ENSMUSG00000018848.4	Rars	ENSMUSG00000018848.4	ENSMUST00000166122.1	protein_coding	chr11:35821137-35825133
chr11	36722881	36722986	+	U6	snRNA	snRNA	chr11	36722881	36722883	+	ENSMUST00000083239.1,ENSMUSG00000065173.1	Gm22127	ENSMUSG00000065173.1	ENSMUST00000083239.1	snRNA	chr11:36722882-36722987
chr11	38037250	38037276	+	(TA)n	Simple_repeat	Simple_repeat	chr11	38037262	38037264	-	ENSMUST00000175443.1,ENSMUSG00000093184.1	Gm25693	ENSMUSG00000093184.1	ENSMUST00000175443.1	miRNA	chr11:38037179-38037263
chr11	38798170	38798277	-	U6	snRNA	snRNA	chr11	38798276	38798278	-	ENSMUST00000093736.1,ENSMUSG00000070249.1	Gm23520	ENSMUSG00000070249.1	ENSMUST00000093736.1	snRNA	chr11:38798171-38798277
chr11	39830655	39830798	+	U1	snRNA	snRNA	chr11	39830655	39830657	+	ENSMUST00000157978.1,ENSMUSG00000088603.1	Gm24192	ENSMUSG00000088603.1	ENSMUST00000157978.1	snRNA	chr11:39830656-39830800
chr11	40505568	40505657	+	RMER1B	Other	Other	chr11	40505597	40505599	+	ENSMUST00000119170.1,ENSMUSG00000081097.1	Gm12135	ENSMUSG00000081097.1	ENSMUST00000119170.1	processed_pseudogene	chr11:40505598-40506063
chr11	40612645	40612721	+	A-rich	Low_complexity	Low_complexity	chr11	40612717	40612719	+	ENSMUST00000119565.1,ENSMUSG00000080835.1	Gm12137	ENSMUSG00000080835.1	ENSMUST00000119565.1	processed_pseudogene	chr11:40612718-40613063
chr11	40736206	40736398	+	B2_Mm1t	SINE	B2	chr11	40736305	40736307	+	ENSMUST00000144601.1,ENSMUSG00000020328.10	Nudcd2	ENSMUSG00000020328.10	ENSMUST00000144601.1	protein_coding	chr11:40736306-40739264
chr11	41218698	41219242	+	LTRIS2	LTR	ERV1	chr11	41218836	41218838	+	ENSMUST00000133945.1,ENSMUSG00000086475.1	Platr13	ENSMUSG00000086475.1	ENSMUST00000133945.1	lincRNA	chr11:41218837-41221096
chr11	41703922	41710497	-	L1Md_A	LINE	L1	chr11	41710341	41710343	+	ENSMUST00000155032.7,ENSMUSG00000087306.7	A230004M16Rik	ENSMUSG00000087306.7	ENSMUST00000155032.7	processed_transcript	chr11:41710342-41968687
chr11	41878059	41885133	-	L1Md_T	LINE	L1	chr11	41884465	41884467	+	ENSMUST00000125365.1,ENSMUSG00000087306.7	A230004M16Rik	ENSMUSG00000087306.7	ENSMUST00000125365.1	processed_transcript	chr11:41884466-41973117
chr11	43035727	43035777	+	(TG)n	Simple_repeat	Simple_repeat	chr11	43035745	43035747	+	ENSMUST00000069051.1,ENSMUSG00000055456.1	Gm9972	ENSMUSG00000055456.1	ENSMUST00000069051.1	protein_coding	chr11:43035746-43037278
chr11	43149694	43150037	+	ORR1A2	LTR	ERVL-MaLR	chr11	43149876	43149878	+	ENSMUST00000148911.1,ENSMUSG00000055415.7	Atp10b	ENSMUSG00000055415.7	ENSMUST00000148911.1	protein_coding	chr11:43149877-43159475
chr11	43311087	43311229	-	MER5A	DNA	hAT-Charlie	chr11	43311087	43311089	-	ENSMUST00000144024.1,ENSMUSG00000086791.1	Gm12147	ENSMUSG00000086791.1	ENSMUST00000144024.1	antisense	chr11:43259791-43311088
chr11	43425906	43426006	+	ID_B1	SINE	B4	chr11	43425980	43425982	-	ENSMUST00000117446.7,ENSMUSG00000020415.16	Pttg1	ENSMUSG00000020415.16	ENSMUST00000117446.7	protein_coding	chr11:43420264-43425981
chr11	43425906	43426006	+	ID_B1	SINE	B4	chr11	43425962	43425964	-	ENSMUST00000121638.7,ENSMUSG00000020415.16	Pttg1	ENSMUSG00000020415.16	ENSMUST00000121638.7	protein_coding	chr11:43420274-43425963
chr11	43425906	43426006	+	ID_B1	SINE	B4	chr11	43425980	43425982	-	ENSMUST00000152115.7,ENSMUSG00000020415.16	Pttg1	ENSMUSG00000020415.16	ENSMUST00000152115.7	protein_coding	chr11:43420278-43425981
chr11	43581006	43581212	-	B4A	SINE	B4	chr11	43581115	43581117	-	ENSMUST00000130874.1,ENSMUSG00000085239.1	Gm12150	ENSMUSG00000085239.1	ENSMUST00000130874.1	antisense	chr11:43579602-43581116
chr11	44387273	44389271	+	L1VL2	LINE	L1	chr11	44387273	44387275	-	ENSMUST00000121267.1,ENSMUSG00000082790.1	Gm12155	ENSMUSG00000082790.1	ENSMUST00000121267.1	processed_pseudogene	chr11:44387115-44387274
chr11	44468999	44469043	+	(AGCTG)n	Simple_repeat	Simple_repeat	chr11	44469012	44469014	+	ENSMUST00000175148.1,ENSMUSG00000092889.1	Gm22121	ENSMUSG00000092889.1	ENSMUST00000175148.1	miRNA	chr11:44469013-44469066
chr11	44618098	44618128	+	(T)n	Simple_repeat	Simple_repeat	chr11	44618115	44618117	+	ENSMUST00000149997.7,ENSMUSG00000057098.14	Ebf1	ENSMUSG00000057098.14	ENSMUST00000149997.7	protein_coding	chr11:44618116-44646820
chr11	44662629	44662766	-	Eulor5A	DNA?	DNA?	chr11	44662675	44662677	-	ENSMUST00000130493.1,ENSMUSG00000085784.1	Gm12158	ENSMUSG00000085784.1	ENSMUST00000130493.1	antisense	chr11:44659522-44662676
chr11	45467884	45468547	+	RMER20B	LTR	ERVK	chr11	45468503	45468505	-	ENSMUST00000123422.1,ENSMUSG00000085476.1	Gm12162	ENSMUSG00000085476.1	ENSMUST00000123422.1	lincRNA	chr11:45452399-45468504
chr11	45954306	45954574	+	B4	SINE	B4	chr11	45954416	45954418	-	ENSMUST00000133238.7,ENSMUSG00000011254.16	Thg1l	ENSMUSG00000011254.16	ENSMUST00000133238.7	protein_coding	chr11:45950196-45954417
chr11	45980289	45980313	+	GC_rich	Low_complexity	Low_complexity	chr11	45980309	45980311	+	ENSMUST00000049038.3,ENSMUSG00000040489.5	Sox30	ENSMUSG00000040489.5	ENSMUST00000049038.3	protein_coding	chr11:45980310-46017994
chr11	46127888	46127928	+	L3	LINE	CR1	chr11	46127904	46127906	+	ENSMUST00000151565.7,ENSMUSG00000011256.16	Adam19	ENSMUSG00000011256.16	ENSMUST00000151565.7	protein_coding	chr11:46127905-46143857
chr11	46447142	46447269	-	MTEa	LTR	ERVL-MaLR	chr11	46447247	46447249	-	ENSMUST00000181212.1,ENSMUSG00000097457.1	2310031A07Rik	ENSMUSG00000097457.1	ENSMUST00000181212.1	lincRNA	chr11:46440362-46447248
chr11	46706744	46707436	-	RLTR14-int	LTR	ERV1	chr11	46707058	46707060	-	ENSMUST00000055102.12,ENSMUSG00000040413.15	Timd2	ENSMUSG00000040413.15	ENSMUST00000055102.12	protein_coding	chr11:46670009-46707059
chr11	46706744	46707436	-	RLTR14-int	LTR	ERV1	chr11	46707060	46707062	-	ENSMUST00000125008.1,ENSMUSG00000040413.15	Timd2	ENSMUSG00000040413.15	ENSMUST00000125008.1	protein_coding	chr11:46687026-46707061
chr11	47912384	47912545	-	U1	snRNA	snRNA	chr11	47912544	47912546	-	ENSMUST00000083870.1,ENSMUSG00000065804.1	Gm23039	ENSMUSG00000065804.1	ENSMUST00000083870.1	snRNA	chr11:47912385-47912545
chr11	48826639	48826725	+	GC_rich	Low_complexity	Low_complexity	chr11	48826654	48826656	-	ENSMUST00000104959.1,ENSMUSG00000078154.3	Gm12184	ENSMUSG00000078154.3	ENSMUST00000104959.1	protein_coding	chr11:48825346-48826655
chr11	48847802	48847951	-	ORR1F	LTR	ERVL-MaLR	chr11	48847901	48847903	+	ENSMUST00000131270.1,ENSMUSG00000040350.16	Trim7	ENSMUSG00000040350.16	ENSMUST00000131270.1	protein_coding	chr11:48847902-48852209
chr11	48946150	48947055	-	L1Md_F	LINE	L1	chr11	48946189	48946191	-	ENSMUST00000104958.1,ENSMUSG00000078153.3	Psme2b	ENSMUSG00000078153.3	ENSMUST00000104958.1	protein_coding	chr11:48945354-48946190
chr11	49204266	49204341	+	(TG)n	Simple_repeat	Simple_repeat	chr11	49204318	49204320	+	ENSMUST00000136539.1,ENSMUSG00000046311.13	Zfp62	ENSMUSG00000046311.13	ENSMUST00000136539.1	protein_coding	chr11:49204319-49217763
chr11	49213484	49213646	-	MIR	SINE	MIR	chr11	49213591	49213593	+	ENSMUST00000136691.1,ENSMUSG00000046311.13	Zfp62	ENSMUSG00000046311.13	ENSMUST00000136691.1	protein_coding	chr11:49213592-49215323
chr11	49244543	49244588	+	(TG)n	Simple_repeat	Simple_repeat	chr11	49244566	49244568	+	ENSMUST00000152451.1,ENSMUSG00000020346.16	Mgat1	ENSMUSG00000020346.16	ENSMUST00000152451.1	protein_coding	chr11:49244567-49245417
chr11	49528328	49528398	+	ID4_	SINE	ID	chr11	49528344	49528346	+	ENSMUST00000213899.1,ENSMUSG00000063827.2	Olfr1382	ENSMUSG00000063827.2	ENSMUST00000213899.1	protein_coding	chr11:49528345-49538691
chr11	49771815	49771933	-	B1_Mur3	SINE	Alu	chr11	49771832	49771834	+	ENSMUST00000175153.1,ENSMUSG00000092894.1	Gm23813	ENSMUSG00000092894.1	ENSMUST00000175153.1	miRNA	chr11:49771833-49771909
chr11	49846759	49846790	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	49846770	49846772	+	ENSMUST00000144857.7,ENSMUSG00000020366.18	Mapk9	ENSMUSG00000020366.18	ENSMUST00000144857.7	protein_coding	chr11:49846771-49875626
chr11	49895677	49895748	+	(TA)n	Simple_repeat	Simple_repeat	chr11	49895730	49895732	+	ENSMUST00000116837.1,ENSMUSG00000080487.1	Gm23492	ENSMUSG00000080487.1	ENSMUST00000116837.1	miRNA	chr11:49895731-49895845
chr11	49963210	49964002	-	RLTR40	LTR	ERVK	chr11	49963784	49963786	+	ENSMUST00000109172.3,ENSMUSG00000020374.16	Rasgef1c	ENSMUSG00000020374.16	ENSMUST00000109172.3	protein_coding	chr11:49963785-49975750
chr11	50134955	50135023	+	PB1D11	SINE	Alu	chr11	50135003	50135005	-	ENSMUST00000144990.1,ENSMUSG00000085192.1	Gm12195	ENSMUSG00000085192.1	ENSMUST00000144990.1	antisense	chr11:50134082-50135004
chr11	50291771	50291830	+	G-rich	Low_complexity	Low_complexity	chr11	50291803	50291805	-	ENSMUST00000135868.7,ENSMUSG00000050567.16	Maml1	ENSMUSG00000050567.16	ENSMUST00000135868.7	protein_coding	chr11:50255634-50291804
chr11	50809650	50809734	+	5S	rRNA	rRNA	chr11	50809650	50809652	+	ENSMUST00000157580.1,ENSMUSG00000088205.1	Gm23392	ENSMUSG00000088205.1	ENSMUST00000157580.1	rRNA	chr11:50809651-50809763
chr11	50856676	50856878	-	B4A	SINE	B4	chr11	50856823	50856825	+	ENSMUST00000126890.1,ENSMUSG00000000617.14	Grm6	ENSMUSG00000000617.14	ENSMUST00000126890.1	protein_coding	chr11:50856824-50866208
chr11	50910760	50910885	-	MurSatRep1	Unknown	Unknown	chr11	50910809	50910811	-	ENSMUST00000109129.7,ENSMUSG00000049321.17	Zfp2	ENSMUSG00000049321.17	ENSMUST00000109129.7	protein_coding	chr11:50898712-50910810
chr11	51220214	51220596	-	RLTR31B2	LTR	ERVK	chr11	51220417	51220419	-	ENSMUST00000143209.7,ENSMUSG00000086646.7	Platr20	ENSMUSG00000086646.7	ENSMUST00000143209.7	lincRNA	chr11:51189833-51220418
chr11	51220214	51220596	-	RLTR31B2	LTR	ERVK	chr11	51220472	51220474	+	ENSMUST00000126189.2,ENSMUSG00000061469.3	Gm12569	ENSMUSG00000061469.3	ENSMUST00000126189.2	protein_coding	chr11:51220473-51235053
chr11	51599221	51599324	+	B1_Mur4	SINE	Alu	chr11	51599266	51599268	+	ENSMUST00000169995.1,ENSMUSG00000020359.13	Phykpl	ENSMUSG00000020359.13	ENSMUST00000169995.1	protein_coding	chr11:51599267-51601067
chr11	51898792	51898998	-	L2	LINE	L2	chr11	51898965	51898967	+	ENSMUST00000212253.1,ENSMUSG00000110618.1	Gm39822	ENSMUSG00000110618.1	ENSMUST00000212253.1	lincRNA	chr11:51898966-51909624
chr11	51964381	51964487	+	U6	snRNA	snRNA	chr11	51964381	51964383	+	ENSMUST00000175584.1,ENSMUSG00000093325.1	Gm26061	ENSMUSG00000093325.1	ENSMUST00000175584.1	snRNA	chr11:51964382-51964489
chr11	52039471	52039608	-	B1_Mur3	SINE	Alu	chr11	52039470	52039472	-	ENSMUST00000133940.1,ENSMUSG00000084800.1	Gm12205	ENSMUSG00000084800.1	ENSMUST00000133940.1	antisense	chr11:52038850-52039471
chr11	52168139	52168201	+	GC_rich	Low_complexity	Low_complexity	chr11	52168158	52168160	-	ENSMUST00000203403.2,ENSMUSG00000108218.2	Olfr1372-ps1	ENSMUSG00000108218.2	ENSMUST00000203403.2	transcribed_unprocessed_pseudogene	chr11:52154722-52168159
chr11	52361042	52361150	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	52361134	52361136	+	ENSMUST00000125694.7,ENSMUSG00000020402.11	Vdac1	ENSMUSG00000020402.11	ENSMUST00000125694.7	protein_coding	chr11:52361135-52388496
chr11	52374007	52374109	-	L2b	LINE	L2	chr11	52374099	52374101	+	ENSMUST00000157052.1,ENSMUSG00000020402.11	Vdac1	ENSMUSG00000020402.11	ENSMUST00000157052.1	protein_coding	chr11:52374100-52376775
chr11	53390401	53390505	+	U6	snRNA	snRNA	chr11	53390401	53390403	+	ENSMUST00000082785.1,ENSMUSG00000064719.1	Gm25930	ENSMUSG00000064719.1	ENSMUST00000082785.1	snRNA	chr11:53390402-53390508
chr11	53410598	53410734	-	B3A	SINE	B2	chr11	53410693	53410695	+	ENSMUST00000129019.1,ENSMUSG00000049470.13	Aff4	ENSMUSG00000049470.13	ENSMUST00000129019.1	protein_coding	chr11:53410694-53415833
chr11	53724523	53724770	-	L1MA6	LINE	L1	chr11	53724617	53724619	-	ENSMUST00000151643.1,ENSMUSG00000086595.1	Gm12214	ENSMUSG00000086595.1	ENSMUST00000151643.1	antisense	chr11:53723953-53724618
chr11	53770099	53770138	+	(CCGAA)n	Simple_repeat	Simple_repeat	chr11	53770104	53770106	+	ENSMUST00000142221.7,ENSMUSG00000018899.16	Irf1	ENSMUSG00000018899.16	ENSMUST00000142221.7	protein_coding	chr11:53770105-53774085
chr11	54068978	54069065	+	C-rich	Low_complexity	Low_complexity	chr11	54069013	54069015	-	ENSMUST00000018755.9,ENSMUSG00000020388.12	Pdlim4	ENSMUSG00000020388.12	ENSMUST00000018755.9	protein_coding	chr11:54054928-54069014
chr11	54068978	54069065	+	C-rich	Low_complexity	Low_complexity	chr11	54068990	54068992	-	ENSMUST00000127271.1,ENSMUSG00000020388.12	Pdlim4	ENSMUSG00000020388.12	ENSMUST00000127271.1	protein_coding	chr11:54058951-54068991
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100923	54100925	+	ENSMUST00000093107.11,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000093107.11	protein_coding	chr11:54100924-54131652
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100962	54100964	+	ENSMUST00000125651.7,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000125651.7	protein_coding	chr11:54100963-54127762
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100962	54100964	+	ENSMUST00000019050.11,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000019050.11	protein_coding	chr11:54100963-54131652
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100974	54100976	+	ENSMUST00000135596.8,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000135596.8	protein_coding	chr11:54100975-54111635
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100974	54100976	+	ENSMUST00000174616.7,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000174616.7	protein_coding	chr11:54100975-54131662
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100979	54100981	+	ENSMUST00000129499.7,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000129499.7	protein_coding	chr11:54100980-54110314
chr11	54100905	54101008	+	G-rich	Low_complexity	Low_complexity	chr11	54100990	54100992	+	ENSMUST00000126840.7,ENSMUSG00000018906.14	P4ha2	ENSMUSG00000018906.14	ENSMUST00000126840.7	protein_coding	chr11:54100991-54111563
chr11	54304196	54304221	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	54304201	54304203	+	ENSMUST00000108904.9,ENSMUSG00000020333.17	Acsl6	ENSMUSG00000020333.17	ENSMUST00000108904.9	protein_coding	chr11:54304202-54361539
chr11	54304196	54304221	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	54304201	54304203	+	ENSMUST00000108905.9,ENSMUSG00000020333.17	Acsl6	ENSMUSG00000020333.17	ENSMUST00000108905.9	protein_coding	chr11:54304202-54364752
chr11	54335436	54335526	-	PB1D10	SINE	Alu	chr11	54335496	54335498	+	ENSMUST00000127731.1,ENSMUSG00000020333.17	Acsl6	ENSMUSG00000020333.17	ENSMUST00000127731.1	protein_coding	chr11:54335497-54361539
chr11	54335440	54335536	-	ID_B1	SINE	B4	chr11	54335496	54335498	+	ENSMUST00000127731.1,ENSMUSG00000020333.17	Acsl6	ENSMUSG00000020333.17	ENSMUST00000127731.1	protein_coding	chr11:54335497-54361539
chr11	54458162	54458270	+	U6	snRNA	snRNA	chr11	54458161	54458163	+	ENSMUST00000157812.1,ENSMUSG00000088437.1	Gm24198	ENSMUSG00000088437.1	ENSMUST00000157812.1	snRNA	chr11:54458162-54458269
chr11	54658493	54658619	+	B1_Mur3	SINE	Alu	chr11	54658572	54658574	-	ENSMUST00000175600.2,ENSMUSG00000093341.2	Gm26116	ENSMUSG00000093341.2	ENSMUST00000175600.2	miRNA	chr11:54658497-54658573
chr11	54829711	54829877	+	U1	snRNA	snRNA	chr11	54829710	54829712	+	ENSMUST00000157606.1,ENSMUSG00000088231.1	Gm25426	ENSMUSG00000088231.1	ENSMUST00000157606.1	snRNA	chr11:54829711-54829880
chr11	54902401	54902480	-	ID4	SINE	ID	chr11	54902452	54902454	+	ENSMUST00000125094.7,ENSMUSG00000018339.11	Gpx3	ENSMUSG00000018339.11	ENSMUST00000125094.7	protein_coding	chr11:54902453-54909576
chr11	55123577	55123774	+	ORR1B2	LTR	ERVL-MaLR	chr11	55123694	55123696	+	ENSMUST00000121611.1,ENSMUSG00000080738.1	Mup-ps22	ENSMUSG00000080738.1	ENSMUST00000121611.1	processed_pseudogene	chr11:55123695-55123937
chr11	55482656	55482707	+	L2	LINE	L2	chr11	55482693	55482695	+	ENSMUST00000083127.1,ENSMUSG00000065061.1	Gm22884	ENSMUSG00000065061.1	ENSMUST00000083127.1	snoRNA	chr11:55482694-55482833
chr11	55482656	55482707	+	L2	LINE	L2	chr11	55482705	55482707	+	ENSMUST00000127764.1,ENSMUSG00000087342.1	Gm12238	ENSMUSG00000087342.1	ENSMUST00000127764.1	sense_intronic	chr11:55482706-55482829
chr11	57741298	57741397	+	U6	snRNA	snRNA	chr11	57741299	57741301	+	ENSMUST00000103967.1,ENSMUSG00000077155.1	Gm24582	ENSMUSG00000077155.1	ENSMUST00000103967.1	snRNA	chr11:57741300-57741402
chr11	57764426	57764547	+	5S	rRNA	rRNA	chr11	57764426	57764428	+	ENSMUST00000083872.1,ENSMUSG00000065806.1	n-R5s69	ENSMUSG00000065806.1	ENSMUST00000083872.1	rRNA	chr11:57764427-57764545
chr11	57801625	57801717	+	GC_rich	Low_complexity	Low_complexity	chr11	57801636	57801638	+	ENSMUST00000020826.5,ENSMUSG00000020519.5	Sap30l	ENSMUSG00000020519.5	ENSMUST00000020826.5	protein_coding	chr11:57801637-57810217
chr11	57969341	57969545	+	7SK	RNA	RNA	chr11	57969341	57969343	+	ENSMUST00000158655.1,ENSMUSG00000089280.1	Gm26025	ENSMUSG00000089280.1	ENSMUST00000158655.1	misc_RNA	chr11:57969342-57969612
chr11	58125992	58126128	-	B1_Mus2	SINE	Alu	chr11	58126067	58126069	+	ENSMUST00000129126.1,ENSMUSG00000087629.1	Gm12246	ENSMUSG00000087629.1	ENSMUST00000129126.1	antisense	chr11:58126068-58128512
chr11	58859341	58859456	+	MMSAT4	Satellite	Satellite	chr11	58859432	58859434	+	ENSMUST00000093768.3,ENSMUSG00000072915.3	Gm12258	ENSMUSG00000072915.3	ENSMUST00000093768.3	protein_coding	chr11:58859433-58861956
chr11	58865855	58866018	+	ID_B1	SINE	B4	chr11	58865964	58865966	+	ENSMUST00000138391.1,ENSMUSG00000085744.1	Gm12259	ENSMUSG00000085744.1	ENSMUST00000138391.1	lincRNA	chr11:58865965-58867154
chr11	58904402	58904502	-	PB1D7	SINE	Alu	chr11	58904401	58904403	+	ENSMUST00000148244.1,ENSMUSG00000086063.1	Gm12257	ENSMUSG00000086063.1	ENSMUST00000148244.1	antisense	chr11:58904402-58906170
chr11	58938764	58938820	+	GC_rich	Low_complexity	Low_complexity	chr11	58938783	58938785	-	ENSMUST00000217262.1,ENSMUSG00000020496.9	Rnf187	ENSMUSG00000020496.9	ENSMUST00000217262.1	protein_coding	chr11:58933394-58938784
chr11	58938902	58938931	+	GC_rich	Low_complexity	Low_complexity	chr11	58938915	58938917	-	ENSMUST00000094151.5,ENSMUSG00000020496.9	Rnf187	ENSMUSG00000020496.9	ENSMUST00000094151.5	protein_coding	chr11:58932288-58938916
chr11	59163730	59163762	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	59163738	59163740	-	ENSMUST00000054523.5,ENSMUSG00000049287.5	Iba57	ENSMUSG00000049287.5	ENSMUST00000054523.5	protein_coding	chr11:59155369-59163739
chr11	59337040	59337166	-	B1_Mur4	SINE	Alu	chr11	59337145	59337147	-	ENSMUST00000177002.1,ENSMUSG00000093572.1	Gm24756	ENSMUSG00000093572.1	ENSMUST00000177002.1	miRNA	chr11:59337051-59337146
chr11	59505685	59505723	+	GA-rich	Low_complexity	Low_complexity	chr11	59505684	59505686	+	ENSMUST00000145533.7,ENSMUSG00000072893.12	4933439C10Rik	ENSMUSG00000072893.12	ENSMUST00000145533.7	processed_transcript	chr11:59505685-59511073
chr11	59526742	59526832	+	(GGGA)n	Simple_repeat	Simple_repeat	chr11	59526750	59526752	-	ENSMUST00000139707.1,ENSMUSG00000020472.14	Zkscan17	ENSMUSG00000020472.14	ENSMUST00000139707.1	protein_coding	chr11:59525452-59526751
chr11	59576214	59576256	+	polypyrimidine	Low_complexity	Low_complexity	chr11	59576234	59576236	-	ENSMUST00000214351.1,ENSMUSG00000059610.5	Olfr222	ENSMUSG00000059610.5	ENSMUST00000214351.1	protein_coding	chr11:59570255-59576235
chr11	59813136	59813226	+	5S	rRNA	rRNA	chr11	59813136	59813138	+	ENSMUST00000158325.1,ENSMUSG00000088950.1	Gm24939	ENSMUSG00000088950.1	ENSMUST00000158325.1	rRNA	chr11:59813137-59813273
chr11	59818656	59818793	+	B1_Mur4	SINE	Alu	chr11	59818686	59818688	-	ENSMUST00000126489.1,ENSMUSG00000019373.11	Cops3	ENSMUSG00000019373.11	ENSMUST00000126489.1	protein_coding	chr11:59817795-59818687
chr11	59833248	59833448	+	B3	SINE	B2	chr11	59833292	59833294	-	ENSMUST00000136901.7,ENSMUSG00000019373.11	Cops3	ENSMUSG00000019373.11	ENSMUST00000136901.7	protein_coding	chr11:59824314-59833293
chr11	59921214	59921576	-	MTC	LTR	ERVL-MaLR	chr11	59921498	59921500	+	ENSMUST00000130205.1,ENSMUSG00000085551.1	1810063I02Rik	ENSMUSG00000085551.1	ENSMUST00000130205.1	lincRNA	chr11:59921499-59921889
chr11	60021188	60021545	+	MT2A	LTR	ERVL	chr11	60021225	60021227	-	ENSMUST00000143646.1,ENSMUSG00000000301.16	Pemt	ENSMUSG00000000301.16	ENSMUST00000143646.1	protein_coding	chr11:59976859-60021226
chr11	60040026	60040494	-	MT2_Mm	LTR	ERVL	chr11	60040168	60040170	-	ENSMUST00000147422.7,ENSMUSG00000000301.16	Pemt	ENSMUSG00000000301.16	ENSMUST00000147422.7	protein_coding	chr11:59970844-60040169
chr11	60222581	60222605	+	(T)n	Simple_repeat	Simple_repeat	chr11	60222580	60222582	-	ENSMUST00000136215.1,ENSMUSG00000020538.15	Srebf1	ENSMUSG00000020538.15	ENSMUST00000136215.1	protein_coding	chr11:60206950-60222581
chr11	60302379	60303055	+	RLTR26B_MM	LTR	ERVK	chr11	60302823	60302825	-	ENSMUST00000183802.1,ENSMUSG00000098349.1	Gm27711	ENSMUSG00000098349.1	ENSMUST00000183802.1	miRNA	chr11:60302707-60302824
chr11	60735860	60735952	+	U6	snRNA	snRNA	chr11	60735860	60735862	+	ENSMUST00000158956.1,ENSMUSG00000089581.1	Gm23341	ENSMUSG00000089581.1	ENSMUST00000158956.1	snRNA	chr11:60735861-60735957
chr11	60752625	60752753	+	B1_Mur1	SINE	Alu	chr11	60752677	60752679	-	ENSMUST00000124799.1,ENSMUSG00000002814.15	Top3a	ENSMUSG00000002814.15	ENSMUST00000124799.1	protein_coding	chr11:60749457-60752678
chr11	60797851	60797903	+	B1_Mus2	SINE	Alu	chr11	60797852	60797854	-	ENSMUST00000124227.1,ENSMUSG00000020534.14	Shmt1	ENSMUSG00000020534.14	ENSMUST00000124227.1	protein_coding	chr11:60792949-60797853
chr11	60802533	60802976	-	RMER6B	LTR	ERVK	chr11	60802669	60802671	-	ENSMUST00000173698.1,ENSMUSG00000020534.14	Shmt1	ENSMUSG00000020534.14	ENSMUST00000173698.1	protein_coding	chr11:60798652-60802670
chr11	60804430	60804605	+	ID_B1	SINE	B4	chr11	60804577	60804579	+	ENSMUST00000158331.1,ENSMUSG00000088956.1	Gm24945	ENSMUSG00000088956.1	ENSMUST00000158331.1	snoRNA	chr11:60804578-60804703
chr11	60811035	60811132	+	B1_Mus2	SINE	Alu	chr11	60811090	60811092	-	ENSMUST00000173260.7,ENSMUSG00000020534.14	Shmt1	ENSMUSG00000020534.14	ENSMUST00000173260.7	protein_coding	chr11:60797245-60811091
chr11	60811676	60811817	-	B1_Mus1	SINE	Alu	chr11	60811717	60811719	-	ENSMUST00000172659.1,ENSMUSG00000020534.14	Shmt1	ENSMUSG00000020534.14	ENSMUST00000172659.1	protein_coding	chr11:60804345-60811718
chr11	60914558	60915001	-	L1ME2	LINE	L1	chr11	60914749	60914751	-	ENSMUST00000143800.1,ENSMUSG00000018931.3	Natd1	ENSMUSG00000018931.3	ENSMUST00000143800.1	protein_coding	chr11:60905954-60914750
chr11	61175040	61175074	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr11	61175054	61175056	-	ENSMUST00000041683.8,ENSMUSG00000042506.15	Usp22	ENSMUSG00000042506.15	ENSMUST00000041683.8	protein_coding	chr11:61151785-61175055
chr11	61334760	61334867	+	U6	snRNA	snRNA	chr11	61334760	61334762	+	ENSMUST00000082784.1,ENSMUSG00000064718.1	Gm25929	ENSMUSG00000064718.1	ENSMUST00000082784.1	snRNA	chr11:61334761-61334867
chr11	61579685	61579727	+	GC_rich	Low_complexity	Low_complexity	chr11	61579684	61579686	-	ENSMUST00000001063.14,ENSMUSG00000001036.17	Epn2	ENSMUSG00000001036.17	ENSMUST00000001063.14	protein_coding	chr11:61517249-61579685
chr11	61579685	61579727	+	GC_rich	Low_complexity	Low_complexity	chr11	61579684	61579686	-	ENSMUST00000108713.7,ENSMUSG00000001036.17	Epn2	ENSMUSG00000001036.17	ENSMUST00000108713.7	protein_coding	chr11:61517249-61579685
chr11	61579685	61579727	+	GC_rich	Low_complexity	Low_complexity	chr11	61579686	61579688	-	ENSMUST00000179936.7,ENSMUSG00000001036.17	Epn2	ENSMUSG00000001036.17	ENSMUST00000179936.7	protein_coding	chr11:61517250-61579687
chr11	61579685	61579727	+	GC_rich	Low_complexity	Low_complexity	chr11	61579686	61579688	-	ENSMUST00000178202.7,ENSMUSG00000001036.17	Epn2	ENSMUSG00000001036.17	ENSMUST00000178202.7	protein_coding	chr11:61517250-61579687
chr11	61803931	61804059	+	B1_Mur2	SINE	Alu	chr11	61804020	61804022	-	ENSMUST00000157049.1,ENSMUSG00000004798.14	Ulk2	ENSMUSG00000004798.14	ENSMUST00000157049.1	protein_coding	chr11:61799902-61804021
chr11	61865153	61865654	-	Kanga2_a	DNA	TcMar-Tc2	chr11	61865474	61865476	+	ENSMUST00000182516.1,ENSMUSG00000098196.1	Gm26964	ENSMUSG00000098196.1	ENSMUST00000182516.1	lincRNA	chr11:61865475-61867639
chr11	61936445	61936552	-	U6	snRNA	snRNA	chr11	61936551	61936553	-	ENSMUST00000083005.1,ENSMUSG00000064939.1	Gm23721	ENSMUSG00000064939.1	ENSMUST00000083005.1	snRNA	chr11:61936446-61936552
chr11	61936552	61937358	+	MYSERV6-int	LTR	ERVK	chr11	61936551	61936553	-	ENSMUST00000083005.1,ENSMUSG00000064939.1	Gm23721	ENSMUSG00000064939.1	ENSMUST00000083005.1	snRNA	chr11:61936446-61936552
chr11	61975971	61976295	+	ORR1A2	LTR	ERVL-MaLR	chr11	61976117	61976119	+	ENSMUST00000202869.1,ENSMUSG00000042331.13	Specc1	ENSMUSG00000042331.13	ENSMUST00000202869.1	protein_coding	chr11:61976118-62073707
chr11	62305152	62305218	+	MIR3	SINE	MIR	chr11	62305169	62305171	-	ENSMUST00000119805.1,ENSMUSG00000081340.1	Gm12275	ENSMUSG00000081340.1	ENSMUST00000119805.1	processed_pseudogene	chr11:62304864-62305170
chr11	62522717	62522749	+	(T)n	Simple_repeat	Simple_repeat	chr11	62522740	62522742	+	ENSMUST00000143382.1,ENSMUSG00000086636.1	Gm12949	ENSMUSG00000086636.1	ENSMUST00000143382.1	antisense	chr11:62522741-62523542
chr11	62634655	62634796	+	PB1D9	SINE	Alu	chr11	62634703	62634705	+	ENSMUST00000142492.1,ENSMUSG00000085170.1	Lrrc75aos1	ENSMUSG00000085170.1	ENSMUST00000142492.1	antisense	chr11:62634704-62638788
chr11	62728900	62729318	-	MTC	LTR	ERVL-MaLR	chr11	62729092	62729094	-	ENSMUST00000005399.9,ENSMUSG00000005267.13	Zfp287	ENSMUSG00000005267.13	ENSMUST00000005399.9	protein_coding	chr11:62713287-62729093
chr11	62759718	62760615	+	L1_Rod	LINE	L1	chr11	62760556	62760558	-	ENSMUST00000207474.1,ENSMUSG00000047342.17	Zfp286	ENSMUSG00000047342.17	ENSMUST00000207474.1	protein_coding	chr11:62752577-62760557
chr11	62759718	62760615	+	L1_Rod	LINE	L1	chr11	62760557	62760559	-	ENSMUST00000138105.1,ENSMUSG00000047342.17	Zfp286	ENSMUSG00000047342.17	ENSMUST00000138105.1	protein_coding	chr11:62757178-62760558
chr11	64012565	64012702	+	L1MD2	LINE	L1	chr11	64012614	64012616	+	ENSMUST00000130860.1,ENSMUSG00000084884.1	Gm12289	ENSMUSG00000084884.1	ENSMUST00000130860.1	antisense	chr11:64012615-64015224
chr11	64590479	64590648	+	MER53	DNA	hAT	chr11	64590639	64590641	-	ENSMUST00000116780.1,ENSMUSG00000080430.1	Gm24275	ENSMUSG00000080430.1	ENSMUST00000116780.1	miRNA	chr11:64590495-64590640
chr11	64760024	64760096	-	MTD	LTR	ERVL-MaLR	chr11	64760026	64760028	-	ENSMUST00000121627.1,ENSMUSG00000081756.1	Gm12291	ENSMUSG00000081756.1	ENSMUST00000121627.1	processed_pseudogene	chr11:64759717-64760027
chr11	64843498	64843902	+	Lx5b	LINE	L1	chr11	64843752	64843754	-	ENSMUST00000122911.1,ENSMUSG00000086490.1	Gm12292	ENSMUSG00000086490.1	ENSMUST00000122911.1	lincRNA	chr11:64840600-64843753
chr11	64985411	64985478	+	B2_Mm2	SINE	B2	chr11	64985472	64985474	+	ENSMUST00000132308.1,ENSMUSG00000020549.14	Elac2	ENSMUSG00000020549.14	ENSMUST00000132308.1	protein_coding	chr11:64985473-64992506
chr11	65181981	65182232	-	MER2	DNA	TcMar-Tigger	chr11	65182156	65182158	-	ENSMUST00000151483.1,ENSMUSG00000020542.18	Myocd	ENSMUSG00000020542.18	ENSMUST00000151483.1	protein_coding	chr11:65176773-65182157
chr11	65287633	65287975	-	MTE2a	LTR	ERVL-MaLR	chr11	65287832	65287834	-	ENSMUST00000128453.7,ENSMUSG00000085162.7	Gm12295	ENSMUSG00000085162.7	ENSMUST00000128453.7	lincRNA	chr11:65277654-65287833
chr11	65626393	65626503	+	U6	snRNA	snRNA	chr11	65626393	65626395	+	ENSMUST00000083170.1,ENSMUSG00000065104.1	Gm26128	ENSMUSG00000065104.1	ENSMUST00000083170.1	snRNA	chr11:65626394-65626503
chr11	65745742	65745913	-	L3	LINE	CR1	chr11	65745837	65745839	-	ENSMUST00000138093.1,ENSMUSG00000033352.11	Map2k4	ENSMUSG00000033352.11	ENSMUST00000138093.1	protein_coding	chr11:65719539-65745838
chr11	65807146	65807180	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	65807174	65807176	+	ENSMUST00000071465.8,ENSMUSG00000018347.16	Zkscan6	ENSMUSG00000018347.16	ENSMUST00000071465.8	protein_coding	chr11:65807175-65829238
chr11	66525964	66526145	+	G-rich	Low_complexity	Low_complexity	chr11	66525963	66525965	-	ENSMUST00000066679.6,ENSMUSG00000053930.13	Shisa6	ENSMUSG00000053930.13	ENSMUST00000066679.6	protein_coding	chr11:66217472-66525964
chr11	67025053	67025166	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	67025153	67025155	+	ENSMUST00000079077.11,ENSMUSG00000050270.12	Tmem220	ENSMUSG00000050270.12	ENSMUST00000079077.11	protein_coding	chr11:67025154-67034790
chr11	67025053	67025166	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	67025153	67025155	+	ENSMUST00000061786.5,ENSMUSG00000050270.12	Tmem220	ENSMUSG00000050270.12	ENSMUST00000061786.5	protein_coding	chr11:67025154-67035312
chr11	67228558	67228943	+	RLTR14	LTR	ERV1	chr11	67228741	67228743	-	ENSMUST00000137662.1,ENSMUSG00000085348.1	Myhas	ENSMUSG00000085348.1	ENSMUST00000137662.1	antisense	chr11:67223879-67228742
chr11	67364089	67364328	+	7SK	RNA	RNA	chr11	67364089	67364091	+	ENSMUST00000122618.1,ENSMUSG00000084567.1	Gm26476	ENSMUSG00000084567.1	ENSMUST00000122618.1	misc_RNA	chr11:67364090-67364402
chr11	68053334	68053391	+	5S	rRNA	rRNA	chr11	68053334	68053336	+	ENSMUST00000158974.1,ENSMUSG00000089599.1	Gm26157	ENSMUSG00000089599.1	ENSMUST00000158974.1	rRNA	chr11:68053335-68053460
chr11	68386744	68386838	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	68386825	68386827	-	ENSMUST00000021284.3,ENSMUSG00000020902.12	Ntn1	ENSMUSG00000020902.12	ENSMUST00000021284.3	protein_coding	chr11:68209364-68386826
chr11	68386995	68387045	+	GC_rich	Low_complexity	Low_complexity	chr11	68387011	68387013	-	ENSMUST00000135141.1,ENSMUSG00000020902.12	Ntn1	ENSMUSG00000020902.12	ENSMUST00000135141.1	protein_coding	chr11:68385644-68387012
chr11	68908015	68908125	+	U6	snRNA	snRNA	chr11	68908019	68908021	+	ENSMUST00000158285.1,ENSMUSG00000088910.1	Gm22608	ENSMUSG00000088910.1	ENSMUST00000158285.1	snRNA	chr11:68908020-68908122
chr11	68975055	68975195	-	B4A	SINE	B4	chr11	68975184	68975186	-	ENSMUST00000150017.7,ENSMUSG00000032892.14	Rangrf	ENSMUSG00000032892.14	ENSMUST00000150017.7	protein_coding	chr11:68972484-68975185
chr11	68996001	68996077	+	U6	snRNA	snRNA	chr11	68996001	68996003	+	ENSMUST00000122573.1,ENSMUSG00000084522.1	Gm25819	ENSMUSG00000084522.1	ENSMUST00000122573.1	snRNA	chr11:68996002-68996085
chr11	69015890	69015990	+	B1F1	SINE	Alu	chr11	69015910	69015912	+	ENSMUST00000021278.13,ENSMUSG00000020898.18	Ctc1	ENSMUSG00000020898.18	ENSMUST00000021278.13	protein_coding	chr11:69015911-69036473
chr11	69015890	69015990	+	B1F1	SINE	Alu	chr11	69015925	69015927	+	ENSMUST00000135611.7,ENSMUSG00000020898.18	Ctc1	ENSMUSG00000020898.18	ENSMUST00000135611.7	protein_coding	chr11:69015926-69025159
chr11	69015890	69015990	+	B1F1	SINE	Alu	chr11	69015953	69015955	+	ENSMUST00000161455.7,ENSMUSG00000020898.18	Ctc1	ENSMUSG00000020898.18	ENSMUST00000161455.7	protein_coding	chr11:69015954-69036470
chr11	69034436	69034592	-	PB1D9	SINE	Alu	chr11	69034520	69034522	+	ENSMUST00000162256.7,ENSMUSG00000020898.18	Ctc1	ENSMUSG00000020898.18	ENSMUST00000162256.7	protein_coding	chr11:69034521-69035806
chr11	69073425	69073562	+	U8	snRNA	snRNA	chr11	69073426	69073428	+	ENSMUST00000082965.1,ENSMUSG00000064899.1	Snord118	ENSMUSG00000064899.1	ENSMUST00000082965.1	snoRNA	chr11:69073427-69073561
chr11	69075015	69075115	+	U6	snRNA	snRNA	chr11	69075014	69075016	+	ENSMUST00000158162.1,ENSMUSG00000088787.1	Gm25371	ENSMUSG00000088787.1	ENSMUST00000158162.1	snRNA	chr11:69075015-69075115
chr11	69300406	69300502	+	B1_Mur3	SINE	Alu	chr11	69300489	69300491	-	ENSMUST00000156671.7,ENSMUSG00000032782.19	Cntrob	ENSMUSG00000032782.19	ENSMUST00000156671.7	protein_coding	chr11:69299487-69300490
chr11	69304939	69305030	+	4.5SRNA	scRNA	scRNA	chr11	69304976	69304978	-	ENSMUST00000156175.1,ENSMUSG00000032782.19	Cntrob	ENSMUSG00000032782.19	ENSMUST00000156175.1	protein_coding	chr11:69301517-69304977
chr11	69369404	69369461	+	C-rich	Low_complexity	Low_complexity	chr11	69369405	69369407	-	ENSMUST00000108661.7,ENSMUSG00000018474.17	Chd3	ENSMUSG00000018474.17	ENSMUST00000108661.7	protein_coding	chr11:69343273-69369406
chr11	69505344	69505522	+	B2_Mm2	SINE	B2	chr11	69505434	69505436	-	ENSMUST00000184128.1,ENSMUSG00000098432.1	Gm27493	ENSMUSG00000098432.1	ENSMUST00000184128.1	miRNA	chr11:69505358-69505435
chr11	69616902	69617045	+	MIRb	SINE	MIR	chr11	69616939	69616941	-	ENSMUST00000137159.1,ENSMUSG00000005202.2	Shbg	ENSMUSG00000005202.2	ENSMUST00000137159.1	protein_coding	chr11:69615648-69616940
chr11	69635487	69635602	-	PB1D9	SINE	Alu	chr11	69635518	69635520	-	ENSMUST00000116923.1,ENSMUSG00000080573.1	Mir467f	ENSMUSG00000080573.1	ENSMUST00000116923.1	miRNA	chr11:69635400-69635519
chr11	69649515	69649655	-	B1_Mm	SINE	Alu	chr11	69649604	69649606	+	ENSMUST00000125989.1,ENSMUSG00000018765.5	Fxr2	ENSMUSG00000018765.5	ENSMUST00000125989.1	protein_coding	chr11:69649605-69651081
chr11	69658205	69658326	+	RSINE1	SINE	B4	chr11	69658279	69658281	-	ENSMUST00000149764.7,ENSMUSG00000018761.14	Mpdu1	ENSMUSG00000018761.14	ENSMUST00000149764.7	protein_coding	chr11:69657129-69658280
chr11	69658205	69658326	+	RSINE1	SINE	B4	chr11	69658252	69658254	-	ENSMUST00000127118.1,ENSMUSG00000018761.14	Mpdu1	ENSMUSG00000018761.14	ENSMUST00000127118.1	protein_coding	chr11:69657213-69658253
chr11	69674801	69675015	-	B4	SINE	B4	chr11	69674975	69674977	-	ENSMUST00000123084.7,ENSMUSG00000005204.12	Senp3	ENSMUSG00000005204.12	ENSMUST00000123084.7	protein_coding	chr11:69673116-69674976
chr11	69676896	69676989	+	L2a	LINE	L2	chr11	69676946	69676948	-	ENSMUST00000135372.1,ENSMUSG00000005204.12	Senp3	ENSMUSG00000005204.12	ENSMUST00000135372.1	protein_coding	chr11:69674233-69676947
chr11	69681820	69681921	+	C-rich	Low_complexity	Low_complexity	chr11	69681845	69681847	-	ENSMUST00000005336.8,ENSMUSG00000005204.12	Senp3	ENSMUSG00000005204.12	ENSMUST00000005336.8	protein_coding	chr11:69673115-69681846
chr11	69695802	69695890	+	G-rich	Low_complexity	Low_complexity	chr11	69695809	69695811	-	ENSMUST00000174159.7,ENSMUSG00000018752.19	Tnfsfm13	ENSMUSG00000018752.19	ENSMUST00000174159.7	protein_coding	chr11:69683048-69695810
chr11	69695802	69695890	+	G-rich	Low_complexity	Low_complexity	chr11	69695808	69695810	-	ENSMUST00000108649.2,ENSMUSG00000018752.19	Tnfsfm13	ENSMUSG00000018752.19	ENSMUST00000108649.2	protein_coding	chr11:69683231-69695809
chr11	69695802	69695890	+	G-rich	Low_complexity	Low_complexity	chr11	69695848	69695850	-	ENSMUST00000181810.7,ENSMUSG00000097328.7	Tnfsf12	ENSMUSG00000097328.7	ENSMUST00000181810.7	protein_coding	chr11:69686250-69695849
chr11	69696089	69696252	-	MTD	LTR	ERVL-MaLR	chr11	69696097	69696099	-	ENSMUST00000180587.7,ENSMUSG00000018752.19	Tnfsfm13	ENSMUSG00000018752.19	ENSMUST00000180587.7	protein_coding	chr11:69682577-69696098
chr11	69761844	69761903	-	B1_Mur2	SINE	Alu	chr11	69761843	69761845	-	ENSMUST00000231829.1,ENSMUSG00000018776.10	Slc35g3	ENSMUSG00000018776.10	ENSMUST00000231829.1	protein_coding	chr11:69759890-69761844
chr11	69765836	69765940	+	G-rich	Low_complexity	Low_complexity	chr11	69765911	69765913	+	ENSMUST00000108640.7,ENSMUSG00000018750.14	Zbtb4	ENSMUSG00000018750.14	ENSMUST00000108640.7	protein_coding	chr11:69765912-69780209
chr11	69765836	69765940	+	G-rich	Low_complexity	Low_complexity	chr11	69765921	69765923	+	ENSMUST00000108639.7,ENSMUSG00000018750.14	Zbtb4	ENSMUSG00000018750.14	ENSMUST00000108639.7	protein_coding	chr11:69765922-69784023
chr11	69765940	69766007	+	(CTGGGG)n	Simple_repeat	Simple_repeat	chr11	69765993	69765995	+	ENSMUST00000108642.7,ENSMUSG00000018750.14	Zbtb4	ENSMUSG00000018750.14	ENSMUST00000108642.7	protein_coding	chr11:69765994-69781948
chr11	69888368	69888517	+	B1_Mus1	SINE	Alu	chr11	69888416	69888418	-	ENSMUST00000127238.1,ENSMUSG00000001588.12	Acap1	ENSMUSG00000001588.12	ENSMUST00000127238.1	protein_coding	chr11:69883483-69888417
chr11	69901891	69902030	+	G-rich	Low_complexity	Low_complexity	chr11	69901890	69901892	+	ENSMUST00000061837.10,ENSMUSG00000047284.14	Neurl4	ENSMUSG00000047284.14	ENSMUST00000061837.10	protein_coding	chr11:69901891-69913820
chr11	69901891	69902030	+	G-rich	Low_complexity	Low_complexity	chr11	69902026	69902028	+	ENSMUST00000177160.1,ENSMUSG00000047284.14	Neurl4	ENSMUSG00000047284.14	ENSMUST00000177160.1	protein_coding	chr11:69902027-69905597
chr11	69918277	69918446	+	ID_B1	SINE	B4	chr11	69918303	69918305	-	ENSMUST00000153652.7,ENSMUSG00000078812.10	Eif5a	ENSMUSG00000078812.10	ENSMUST00000153652.7	protein_coding	chr11:69917182-69918304
chr11	69935910	69935955	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	69935913	69935915	+	ENSMUST00000149194.7,ENSMUSG00000018554.13	Ybx2	ENSMUSG00000018554.13	ENSMUST00000149194.7	protein_coding	chr11:69935914-69941576
chr11	69969288	69969426	-	B1_Mm	SINE	Alu	chr11	69969402	69969404	-	ENSMUST00000151766.1,ENSMUSG00000018565.17	Elp5	ENSMUSG00000018565.17	ENSMUST00000151766.1	protein_coding	chr11:69968232-69969403
chr11	69981078	69981175	+	C-rich	Low_complexity	Low_complexity	chr11	69981155	69981157	+	ENSMUST00000108593.7,ENSMUSG00000018559.16	Ctdnep1	ENSMUSG00000018559.16	ENSMUST00000108593.7	protein_coding	chr11:69981156-69990601
chr11	70006803	70006999	+	B2_Mm2	SINE	B2	chr11	70006979	70006981	+	ENSMUST00000152732.1,ENSMUSG00000020888.16	Dvl2	ENSMUSG00000020888.16	ENSMUST00000152732.1	protein_coding	chr11:70006980-70008069
chr11	70018411	70018464	+	C-rich	Low_complexity	Low_complexity	chr11	70018440	70018442	+	ENSMUST00000231415.1,ENSMUSG00000020886.17	Dlg4	ENSMUSG00000020886.17	ENSMUST00000231415.1	protein_coding	chr11:70018441-70047522
chr11	70018411	70018464	+	C-rich	Low_complexity	Low_complexity	chr11	70018443	70018445	+	ENSMUST00000108588.8,ENSMUSG00000020886.17	Dlg4	ENSMUSG00000020886.17	ENSMUST00000108588.8	protein_coding	chr11:70018444-70045532
chr11	70054583	70054719	-	B1_Mur1	SINE	Alu	chr11	70054697	70054699	+	ENSMUST00000092959.10,ENSMUSG00000020884.15	Asgr1	ENSMUSG00000020884.15	ENSMUST00000092959.10	protein_coding	chr11:70054698-70057894
chr11	70155835	70156340	+	MT2_Mm	LTR	ERVL	chr11	70156196	70156198	+	ENSMUST00000144935.8,ENSMUSG00000000318.16	Clec10a	ENSMUSG00000000318.16	ENSMUST00000144935.8	protein_coding	chr11:70156197-70170263
chr11	70167551	70167768	-	B3	SINE	B2	chr11	70167694	70167696	+	ENSMUST00000152635.1,ENSMUSG00000000318.16	Clec10a	ENSMUSG00000000318.16	ENSMUST00000152635.1	protein_coding	chr11:70167695-70169153
chr11	70168845	70169054	+	MIRc	SINE	MIR	chr11	70169052	70169054	+	ENSMUST00000143298.7,ENSMUSG00000000318.16	Clec10a	ENSMUSG00000000318.16	ENSMUST00000143298.7	protein_coding	chr11:70169053-70169963
chr11	70553590	70553986	-	MTC	LTR	ERVL-MaLR	chr11	70553959	70553961	+	ENSMUST00000179806.1,ENSMUSG00000020828.13	Pld2	ENSMUSG00000020828.13	ENSMUST00000179806.1	protein_coding	chr11:70553960-70557103
chr11	70625072	70625617	-	L1_Mur2	LINE	L1	chr11	70625560	70625562	-	ENSMUST00000151599.1,ENSMUSG00000085952.1	Gm12315	ENSMUSG00000085952.1	ENSMUST00000151599.1	lincRNA	chr11:70623027-70625561
chr11	70700517	70700613	+	GC_rich	Low_complexity	Low_complexity	chr11	70700547	70700549	+	ENSMUST00000152618.8,ENSMUSG00000020821.17	Kif1c	ENSMUSG00000020821.17	ENSMUST00000152618.8	protein_coding	chr11:70700548-70707568
chr11	70700517	70700613	+	GC_rich	Low_complexity	Low_complexity	chr11	70700547	70700549	+	ENSMUST00000102554.7,ENSMUSG00000020821.17	Kif1c	ENSMUSG00000020821.17	ENSMUST00000102554.7	protein_coding	chr11:70700548-70731964
chr11	70700517	70700613	+	GC_rich	Low_complexity	Low_complexity	chr11	70700560	70700562	+	ENSMUST00000094499.10,ENSMUSG00000020821.17	Kif1c	ENSMUSG00000020821.17	ENSMUST00000094499.10	protein_coding	chr11:70700561-70730387
chr11	70700517	70700613	+	GC_rich	Low_complexity	Low_complexity	chr11	70700575	70700577	+	ENSMUST00000072187.11,ENSMUSG00000020821.17	Kif1c	ENSMUSG00000020821.17	ENSMUST00000072187.11	protein_coding	chr11:70700576-70730424
chr11	70864537	70864679	+	B1_Mus1	SINE	Alu	chr11	70864659	70864661	+	ENSMUST00000179676.1,ENSMUSG00000093858.1	Gm19967	ENSMUSG00000093858.1	ENSMUST00000179676.1	sense_intronic	chr11:70864660-70872754
chr11	70961694	70961827	+	B1F	SINE	Alu	chr11	70961790	70961792	-	ENSMUST00000145336.1,ENSMUSG00000040667.11	Nup88	ENSMUSG00000040667.11	ENSMUST00000145336.1	protein_coding	chr11:70956200-70961791
chr11	70974580	70974783	-	ID_B1	SINE	B4	chr11	70974739	70974741	+	ENSMUST00000129540.1,ENSMUSG00000018449.12	Rpain	ENSMUSG00000018449.12	ENSMUST00000129540.1	protein_coding	chr11:70974740-70977801
chr11	70996538	70996644	-	U6	snRNA	snRNA	chr11	70996643	70996645	-	ENSMUST00000083312.1,ENSMUSG00000065246.1	Gm22297	ENSMUSG00000065246.1	ENSMUST00000083312.1	snRNA	chr11:70996539-70996644
chr11	71000802	71001242	+	MT2_Mm	LTR	ERVL	chr11	71000953	71000955	-	ENSMUST00000123860.1,ENSMUSG00000040620.15	Dhx33	ENSMUSG00000040620.15	ENSMUST00000123860.1	protein_coding	chr11:70995216-71000954
chr11	71512341	71512406	+	GA-rich	Low_complexity	Low_complexity	chr11	71512376	71512378	+	ENSMUST00000215201.1,ENSMUSG00000072753.12	9230020A06Rik	ENSMUSG00000072753.12	ENSMUST00000215201.1	lincRNA	chr11:71512377-71549201
chr11	71547608	71547768	-	URR1A	DNA	hAT-Charlie	chr11	71547764	71547766	+	ENSMUST00000171420.2,ENSMUSG00000072753.12	9230020A06Rik	ENSMUSG00000072753.12	ENSMUST00000171420.2	lincRNA	chr11:71547765-71572476
chr11	71658468	71658720	+	Lx8b	LINE	L1	chr11	71658476	71658478	-	ENSMUST00000130837.1,ENSMUSG00000087116.1	Gm12324	ENSMUSG00000087116.1	ENSMUST00000130837.1	lincRNA	chr11:71647076-71658477
chr11	72042439	72042466	+	GC_rich	Low_complexity	Low_complexity	chr11	72042454	72042456	+	ENSMUST00000021164.3,ENSMUSG00000020808.3	Pimreg	ENSMUSG00000020808.3	ENSMUST00000021164.3	protein_coding	chr11:72042455-72047370
chr11	72135762	72135829	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	72135777	72135779	-	ENSMUST00000075258.12,ENSMUSG00000040543.16	Pitpnm3	ENSMUSG00000040543.16	ENSMUST00000075258.12	protein_coding	chr11:72047528-72135778
chr11	72135762	72135829	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	72135777	72135779	-	ENSMUST00000142471.1,ENSMUSG00000040543.16	Pitpnm3	ENSMUSG00000040543.16	ENSMUST00000142471.1	protein_coding	chr11:72067802-72135778
chr11	72340370	72340584	+	7SK	RNA	RNA	chr11	72340369	72340371	+	ENSMUST00000158122.1,ENSMUSG00000088747.1	Gm23224	ENSMUSG00000088747.1	ENSMUST00000158122.1	misc_RNA	chr11:72340370-72340640
chr11	72616130	72616267	-	RSINE1	SINE	B4	chr11	72616149	72616151	-	ENSMUST00000082633.1,ENSMUSG00000064567.1	Gm24143	ENSMUSG00000064567.1	ENSMUST00000082633.1	snoRNA	chr11:72616006-72616150
chr11	72648772	72648976	+	RLTR17B_Mm	LTR	ERVK	chr11	72648924	72648926	+	ENSMUST00000174984.1,ENSMUSG00000092725.1	Gm25678	ENSMUSG00000092725.1	ENSMUST00000174984.1	miRNA	chr11:72648925-72648997
chr11	72800345	72800544	-	7SK	RNA	RNA	chr11	72800477	72800479	-	ENSMUST00000158599.1,ENSMUSG00000089224.1	Gm22075	ENSMUSG00000089224.1	ENSMUST00000158599.1	misc_RNA	chr11:72800287-72800478
chr11	72881791	72881954	+	U1	snRNA	snRNA	chr11	72881791	72881793	+	ENSMUST00000083364.1,ENSMUSG00000065298.1	Gm26121	ENSMUSG00000065298.1	ENSMUST00000083364.1	snRNA	chr11:72881792-72881953
chr11	72912107	72912358	+	B4A	SINE	B4	chr11	72912295	72912297	+	ENSMUST00000152481.7,ENSMUSG00000055670.14	Zzef1	ENSMUSG00000055670.14	ENSMUST00000152481.7	protein_coding	chr11:72912296-72925810
chr11	72953047	72953109	+	PB1D7	SINE	Alu	chr11	72953106	72953108	+	ENSMUST00000198722.1,ENSMUSG00000105756.1	Gm44467	ENSMUSG00000105756.1	ENSMUST00000198722.1	miRNA	chr11:72953107-72953196
chr11	73413171	73414951	+	L1_Mus4	LINE	L1	chr11	73413407	73413409	-	ENSMUST00000206690.1,ENSMUSG00000108673.1	Gm44922	ENSMUSG00000108673.1	ENSMUST00000206690.1	unprocessed_pseudogene	chr11:73413319-73413408
chr11	73483851	73484264	+	Lx6	LINE	L1	chr11	73483857	73483859	-	ENSMUST00000206673.1,ENSMUSG00000108742.1	Gm44923	ENSMUSG00000108742.1	ENSMUST00000206673.1	unprocessed_pseudogene	chr11:73483774-73483858
chr11	73693608	73693989	-	RLTR10A	LTR	ERVK	chr11	73693922	73693924	+	ENSMUST00000145996.1,ENSMUSG00000060630.7	Zfp735	ENSMUSG00000060630.7	ENSMUST00000145996.1	protein_coding	chr11:73693923-73710763
chr11	73756036	73756107	+	U6	snRNA	snRNA	chr11	73756036	73756038	+	ENSMUST00000158186.1,ENSMUSG00000088811.1	Gm22381	ENSMUSG00000088811.1	ENSMUST00000158186.1	snRNA	chr11:73756037-73756143
chr11	73867065	73871451	+	MMETn-int	LTR	ERVK	chr11	73869659	73869661	-	ENSMUST00000206645.1,ENSMUSG00000108735.1	Gm44638	ENSMUSG00000108735.1	ENSMUST00000206645.1	unprocessed_pseudogene	chr11:73869586-73869660
chr11	73990394	73990473	+	MIR3	SINE	MIR	chr11	73990406	73990408	-	ENSMUST00000214334.1,ENSMUSG00000049041.6	Olfr398	ENSMUSG00000049041.6	ENSMUST00000214334.1	protein_coding	chr11:73979967-73990407
chr11	73990394	73990473	+	MIR3	SINE	MIR	chr11	73990406	73990408	-	ENSMUST00000117510.3,ENSMUSG00000049041.6	Olfr398	ENSMUSG00000049041.6	ENSMUST00000117510.3	protein_coding	chr11:73979967-73990407
chr11	74264438	74268356	-	MERVK26-int	LTR	ERVK	chr11	74266235	74266237	-	ENSMUST00000127098.1,ENSMUSG00000081864.2	Olfr405-ps1	ENSMUSG00000081864.2	ENSMUST00000127098.1	transcribed_unprocessed_pseudogene	chr11:74255221-74266236
chr11	74319791	74319912	+	5S	rRNA	rRNA	chr11	74319791	74319793	+	ENSMUST00000093668.1,ENSMUSG00000070178.1	n-R5s71	ENSMUSG00000070178.1	ENSMUST00000093668.1	rRNA	chr11:74319792-74319910
chr11	74618367	74618514	-	B1_Mus2	SINE	Alu	chr11	74618512	74618514	-	ENSMUST00000175423.2,ENSMUSG00000093164.2	Gm22993	ENSMUSG00000093164.2	ENSMUST00000175423.2	misc_RNA	chr11:74618260-74618513
chr11	74723837	74723900	+	G-rich	Low_complexity	Low_complexity	chr11	74723857	74723859	-	ENSMUST00000102520.8,ENSMUSG00000020745.15	Pafah1b1	ENSMUSG00000020745.15	ENSMUST00000102520.8	protein_coding	chr11:74673950-74723858
chr11	74728402	74728508	+	U6	snRNA	snRNA	chr11	74728402	74728404	+	ENSMUST00000158264.1,ENSMUSG00000088889.1	Gm24211	ENSMUSG00000088889.1	ENSMUST00000158264.1	snRNA	chr11:74728403-74728509
chr11	74803170	74803332	-	B3	SINE	B2	chr11	74803323	74803325	+	ENSMUST00000144692.1,ENSMUSG00000010554.14	Mettl16	ENSMUSG00000010554.14	ENSMUST00000144692.1	protein_coding	chr11:74803324-74816963
chr11	74830918	74830947	+	GC_rich	Low_complexity	Low_complexity	chr11	74830919	74830921	+	ENSMUST00000000291.8,ENSMUSG00000000282.12	Mnt	ENSMUSG00000000282.12	ENSMUST00000000291.8	protein_coding	chr11:74830920-74845725
chr11	74936060	74936152	-	U6	snRNA	snRNA	chr11	74936150	74936152	-	ENSMUST00000158094.1,ENSMUSG00000088719.1	Gm22733	ENSMUSG00000088719.1	ENSMUST00000158094.1	snRNA	chr11:74936061-74936151
chr11	75039223	75039360	+	B1_Mus1	SINE	Alu	chr11	75039347	75039349	-	ENSMUST00000155508.1,ENSMUSG00000085765.1	Gm12333	ENSMUSG00000085765.1	ENSMUST00000155508.1	antisense	chr11:75036476-75039348
chr11	75169487	75169603	+	PB1D10	SINE	Alu	chr11	75169518	75169520	-	ENSMUST00000055619.4,ENSMUSG00000043099.4	Hic1	ENSMUSG00000043099.4	ENSMUST00000055619.4	protein_coding	chr11:75164565-75169519
chr11	75193732	75193809	+	G-rich	Low_complexity	Low_complexity	chr11	75193782	75193784	+	ENSMUST00000102514.3,ENSMUSG00000045287.6	Rtn4rl1	ENSMUSG00000045287.6	ENSMUST00000102514.3	protein_coding	chr11:75193783-75267769
chr11	75423250	75423388	+	B1_Mur4	SINE	Alu	chr11	75423339	75423341	-	ENSMUST00000125962.1,ENSMUSG00000085359.1	Gm12336	ENSMUSG00000085359.1	ENSMUST00000125962.1	lincRNA	chr11:75422731-75423340
chr11	75560702	75560862	-	RMER30	DNA	hAT-Charlie	chr11	75560820	75560822	+	ENSMUST00000151891.1,ENSMUSG00000038178.16	Slc43a2	ENSMUSG00000038178.16	ENSMUST00000151891.1	protein_coding	chr11:75560821-75567067
chr11	75639089	75639216	+	B1F	SINE	Alu	chr11	75639136	75639138	+	ENSMUST00000130318.7,ENSMUSG00000006127.9	Inpp5k	ENSMUSG00000006127.9	ENSMUST00000130318.7	protein_coding	chr11:75639137-75647276
chr11	76138622	76138763	-	B1F2	SINE	Alu	chr11	76138747	76138749	-	ENSMUST00000141773.7,ENSMUSG00000017288.15	Vps53	ENSMUSG00000017288.15	ENSMUST00000141773.7	protein_coding	chr11:76121568-76138748
chr11	76201985	76202055	+	GC_rich	Low_complexity	Low_complexity	chr11	76202014	76202016	+	ENSMUST00000094014.9,ENSMUSG00000069808.13	Fam57a	ENSMUSG00000069808.13	ENSMUST00000094014.9	protein_coding	chr11:76202015-76209416
chr11	76613363	76613434	-	L2b	LINE	L2	chr11	76613394	76613396	-	ENSMUST00000176024.1,ENSMUSG00000017631.18	Abr	ENSMUSG00000017631.18	ENSMUST00000176024.1	protein_coding	chr11:76479113-76613395
chr11	76614388	76614467	+	ID4_	SINE	ID	chr11	76614466	76614468	+	ENSMUST00000180748.1,ENSMUSG00000097147.1	Gm26780	ENSMUSG00000097147.1	ENSMUST00000180748.1	lincRNA	chr11:76614467-76622204
chr11	77018110	77018211	-	PB1D10	SINE	Alu	chr11	77018176	77018178	+	ENSMUST00000137819.1,ENSMUSG00000020838.12	Slc6a4	ENSMUSG00000020838.12	ENSMUST00000137819.1	protein_coding	chr11:77018177-77022346
chr11	77390901	77391491	+	L1Md_F2	LINE	L1	chr11	77391436	77391438	+	ENSMUST00000180545.1,ENSMUSG00000037926.15	Ssh2	ENSMUSG00000037926.15	ENSMUST00000180545.1	protein_coding	chr11:77391437-77394003
chr11	77513369	77513451	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	77513369	77513371	-	ENSMUST00000060417.10,ENSMUSG00000044328.13	Trp53i13	ENSMUSG00000044328.13	ENSMUST00000060417.10	protein_coding	chr11:77508099-77513370
chr11	77658699	77659049	+	MT2B1	LTR	ERVL	chr11	77658706	77658708	-	ENSMUST00000104254.1,ENSMUSG00000077442.1	Gm23132	ENSMUSG00000077442.1	ENSMUST00000104254.1	snoRNA	chr11:77658576-77658707
chr11	77687456	77687480	+	GC_rich	Low_complexity	Low_complexity	chr11	77687458	77687460	+	ENSMUST00000126942.1,ENSMUSG00000037857.16	Nufip2	ENSMUSG00000037857.16	ENSMUST00000126942.1	protein_coding	chr11:77687459-77691920
chr11	77721807	77721946	-	B1_Mus1	SINE	Alu	chr11	77721833	77721835	-	ENSMUST00000124178.1,ENSMUSG00000000724.10	Cryba1	ENSMUSG00000000724.10	ENSMUST00000124178.1	protein_coding	chr11:77718615-77721834
chr11	77884407	77884601	-	B3A	SINE	B2	chr11	77884543	77884545	-	ENSMUST00000155401.1,ENSMUSG00000017453.4	Pipox	ENSMUSG00000017453.4	ENSMUST00000155401.1	protein_coding	chr11:77882619-77884544
chr11	77894032	77894141	-	Eulor8	DNA	TcMar?	chr11	77894095	77894097	-	ENSMUST00000017597.4,ENSMUSG00000017453.4	Pipox	ENSMUSG00000017453.4	ENSMUST00000017597.4	protein_coding	chr11:77880615-77894096
chr11	77931021	77931049	+	GC_rich	Low_complexity	Low_complexity	chr11	77931038	77931040	+	ENSMUST00000155087.7,ENSMUSG00000000632.13	Sez6	ENSMUSG00000000632.13	ENSMUST00000155087.7	protein_coding	chr11:77931039-77978061
chr11	78037921	78037963	+	GC_rich	Low_complexity	Low_complexity	chr11	78037930	78037932	+	ENSMUST00000072289.11,ENSMUSG00000061981.14	Flot2	ENSMUSG00000061981.14	ENSMUST00000072289.11	protein_coding	chr11:78037931-78060434
chr11	78037921	78037963	+	GC_rich	Low_complexity	Low_complexity	chr11	78037930	78037932	+	ENSMUST00000148162.8,ENSMUSG00000061981.14	Flot2	ENSMUSG00000061981.14	ENSMUST00000148162.8	protein_coding	chr11:78037931-78060434
chr11	78037921	78037963	+	GC_rich	Low_complexity	Low_complexity	chr11	78037940	78037942	+	ENSMUST00000100784.8,ENSMUSG00000061981.14	Flot2	ENSMUSG00000061981.14	ENSMUST00000100784.8	protein_coding	chr11:78037941-78060431
chr11	78169798	78169857	+	tRNA-Ala-GCY_	tRNA	tRNA	chr11	78169827	78169829	-	ENSMUST00000147798.1,ENSMUSG00000017405.14	Nek8	ENSMUSG00000017405.14	ENSMUST00000147798.1	protein_coding	chr11:78168972-78169828
chr11	78178628	78178670	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr11	78178650	78178652	+	ENSMUST00000092880.13,ENSMUSG00000019437.17	Tlcd1	ENSMUSG00000019437.17	ENSMUST00000092880.13	protein_coding	chr11:78178651-78181909
chr11	78193291	78193445	-	RMER15-int	LTR	ERVL	chr11	78193391	78193393	+	ENSMUST00000078099.3,ENSMUSG00000044122.14	Proca1	ENSMUSG00000044122.14	ENSMUST00000078099.3	protein_coding	chr11:78193392-78205504
chr11	78204312	78204448	-	B1_Mus1	SINE	Alu	chr11	78204426	78204428	+	ENSMUST00000124772.1,ENSMUSG00000044122.14	Proca1	ENSMUSG00000044122.14	ENSMUST00000124772.1	protein_coding	chr11:78204427-78205091
chr11	78262424	78262478	+	(T)n	Simple_repeat	Simple_repeat	chr11	78262471	78262473	+	ENSMUST00000141331.1,ENSMUSG00000010277.7	2610507B11Rik	ENSMUSG00000010277.7	ENSMUST00000141331.1	protein_coding	chr11:78262472-78263966
chr11	78293670	78293817	+	B1_Mm	SINE	Alu	chr11	78293806	78293808	+	ENSMUST00000136011.1,ENSMUSG00000037593.11	BC030499	ENSMUSG00000037593.11	ENSMUST00000136011.1	protein_coding	chr11:78293807-78296805
chr11	78317839	78317997	-	MER58A	DNA	hAT-Charlie	chr11	78317961	78317963	+	ENSMUST00000128359.1,ENSMUSG00000002055.9	Spag5	ENSMUSG00000002055.9	ENSMUST00000128359.1	protein_coding	chr11:78317962-78320375
chr11	78319915	78319969	-	ID_B1	SINE	B4	chr11	78319925	78319927	+	ENSMUST00000125477.1,ENSMUSG00000002055.9	Spag5	ENSMUSG00000002055.9	ENSMUST00000125477.1	protein_coding	chr11:78319926-78320740
chr11	78347909	78347957	+	G-rich	Low_complexity	Low_complexity	chr11	78347934	78347936	+	ENSMUST00000125720.1,ENSMUSG00000002058.13	Unc119	ENSMUSG00000002058.13	ENSMUST00000125720.1	protein_coding	chr11:78347935-78348998
chr11	78443619	78444345	+	RMER19B	LTR	ERVK	chr11	78444106	78444108	+	ENSMUST00000135030.1,ENSMUSG00000086380.1	Gm11195	ENSMUSG00000086380.1	ENSMUST00000135030.1	lincRNA	chr11:78444107-78444901
chr11	78470154	78470262	+	PB1D11	SINE	Alu	chr11	78470225	78470227	+	ENSMUST00000180786.1,ENSMUSG00000020829.9	Slc46a1	ENSMUSG00000020829.9	ENSMUST00000180786.1	protein_coding	chr11:78470226-78472059
chr11	78512185	78512208	+	GC_rich	Low_complexity	Low_complexity	chr11	78512192	78512194	+	ENSMUST00000001127.10,ENSMUSG00000001100.10	Poldip2	ENSMUSG00000001100.10	ENSMUST00000001127.10	protein_coding	chr11:78512193-78522736
chr11	78516044	78516254	-	B3	SINE	B2	chr11	78516228	78516230	+	ENSMUST00000147930.7,ENSMUSG00000001100.10	Poldip2	ENSMUSG00000001100.10	ENSMUST00000147930.7	protein_coding	chr11:78516229-78517932
chr11	78696469	78696529	+	A-rich	Low_complexity	Low_complexity	chr11	78696493	78696495	-	ENSMUST00000165271.1,ENSMUSG00000017376.15	Nlk	ENSMUSG00000017376.15	ENSMUST00000165271.1	protein_coding	chr11:78617272-78696494
chr11	78697316	78697397	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	78697372	78697374	-	ENSMUST00000142739.7,ENSMUSG00000017376.15	Nlk	ENSMUSG00000017376.15	ENSMUST00000142739.7	protein_coding	chr11:78567168-78697373
chr11	78754418	78754544	-	B1_Mur4	SINE	Alu	chr11	78754521	78754523	-	ENSMUST00000116950.2,ENSMUSG00000080600.2	Gm23840	ENSMUSG00000080600.2	ENSMUST00000116950.2	miRNA	chr11:78754426-78754522
chr11	78824386	78824471	+	U6	snRNA	snRNA	chr11	78824386	78824388	+	ENSMUST00000158123.1,ENSMUSG00000088748.1	Gm23219	ENSMUSG00000088748.1	ENSMUST00000158123.1	snRNA	chr11:78824387-78824473
chr11	78970276	78970419	+	B1_Mur4	SINE	Alu	chr11	78970329	78970331	-	ENSMUST00000140073.1,ENSMUSG00000001123.15	Lgals9	ENSMUSG00000001123.15	ENSMUST00000140073.1	protein_coding	chr11:78966881-78970330
chr11	79273646	79273930	-	Zaphod	DNA	hAT-Tip100	chr11	79273892	79273894	-	ENSMUST00000208339.1,ENSMUSG00000108822.1	Gm44787	ENSMUSG00000108822.1	ENSMUST00000208339.1	lincRNA	chr11:79258586-79273893
chr11	79273646	79273930	-	Zaphod	DNA	hAT-Tip100	chr11	79273843	79273845	-	ENSMUST00000208268.1,ENSMUSG00000108822.1	Gm44787	ENSMUSG00000108822.1	ENSMUST00000208268.1	lincRNA	chr11:79259315-79273844
chr11	79296770	79296936	-	ID_B1	SINE	B4	chr11	79296905	79296907	-	ENSMUST00000068448.2,ENSMUSG00000055072.2	Gm9964	ENSMUSG00000055072.2	ENSMUST00000068448.2	protein_coding	chr11:79296179-79296906
chr11	79339757	79339942	+	C-rich	Low_complexity	Low_complexity	chr11	79339791	79339793	+	ENSMUST00000219057.1,ENSMUSG00000020716.16	Nf1	ENSMUSG00000020716.16	ENSMUST00000219057.1	protein_coding	chr11:79339792-79458906
chr11	79339757	79339942	+	C-rich	Low_complexity	Low_complexity	chr11	79339791	79339793	+	ENSMUST00000108251.8,ENSMUSG00000020716.16	Nf1	ENSMUSG00000020716.16	ENSMUST00000108251.8	protein_coding	chr11:79339792-79578942
chr11	79339757	79339942	+	C-rich	Low_complexity	Low_complexity	chr11	79339824	79339826	+	ENSMUST00000071325.8,ENSMUSG00000020716.16	Nf1	ENSMUSG00000020716.16	ENSMUST00000071325.8	protein_coding	chr11:79339825-79581612
chr11	79339757	79339942	+	C-rich	Low_complexity	Low_complexity	chr11	79339886	79339888	+	ENSMUST00000131800.1,ENSMUSG00000020716.16	Nf1	ENSMUSG00000020716.16	ENSMUST00000131800.1	protein_coding	chr11:79339887-79430788
chr11	79595163	79595266	+	U6	snRNA	snRNA	chr11	79595164	79595166	+	ENSMUST00000082552.1,ENSMUSG00000064486.1	Gm23293	ENSMUSG00000064486.1	ENSMUST00000082552.1	snRNA	chr11:79595165-79595268
chr11	79639021	79639128	-	U6	snRNA	snRNA	chr11	79639127	79639129	-	ENSMUST00000104386.1,ENSMUSG00000077574.1	Gm24887	ENSMUSG00000077574.1	ENSMUST00000104386.1	snRNA	chr11:79639021-79639128
chr11	79639128	79639243	-	ID_B1	SINE	B4	chr11	79639127	79639129	-	ENSMUST00000104386.1,ENSMUSG00000077574.1	Gm24887	ENSMUSG00000077574.1	ENSMUST00000104386.1	snRNA	chr11:79639021-79639128
chr11	79782680	79783027	-	ORR1A1	LTR	ERVL-MaLR	chr11	79782886	79782888	-	ENSMUST00000150312.1,ENSMUSG00000086474.2	9130204K15Rik	ENSMUSG00000086474.2	ENSMUST00000150312.1	lincRNA	chr11:79781979-79782887
chr11	79804963	79805335	-	ORR1A4	LTR	ERVL-MaLR	chr11	79805171	79805173	-	ENSMUST00000162268.1,ENSMUSG00000086474.2	9130204K15Rik	ENSMUSG00000086474.2	ENSMUST00000162268.1	lincRNA	chr11:79796193-79805172
chr11	79860698	79860846	+	MER5A	DNA	hAT-Charlie	chr11	79860715	79860717	-	ENSMUST00000159495.1,ENSMUSG00000086474.2	9130204K15Rik	ENSMUSG00000086474.2	ENSMUST00000159495.1	lincRNA	chr11:79782509-79860716
chr11	80022423	80022541	+	B1_Mus1	SINE	Alu	chr11	80022527	80022529	-	ENSMUST00000181003.1,ENSMUSG00000097335.1	Gm26563	ENSMUSG00000097335.1	ENSMUST00000181003.1	lincRNA	chr11:80017354-80022528
chr11	80029742	80029878	+	B1_Mm	SINE	Alu	chr11	80029867	80029869	-	ENSMUST00000181152.1,ENSMUSG00000097335.1	Gm26563	ENSMUSG00000097335.1	ENSMUST00000181152.1	lincRNA	chr11:80018480-80029868
chr11	80102960	80103015	+	A-rich	Low_complexity	Low_complexity	chr11	80103002	80103004	+	ENSMUST00000154168.1,ENSMUSG00000017550.14	Atad5	ENSMUSG00000017550.14	ENSMUST00000154168.1	protein_coding	chr11:80103003-80108508
chr11	80209014	80209063	+	C-rich	Low_complexity	Low_complexity	chr11	80209018	80209020	+	ENSMUST00000077451.13,ENSMUSG00000017686.16	Rhot1	ENSMUSG00000017686.16	ENSMUST00000077451.13	protein_coding	chr11:80209019-80266812
chr11	80209014	80209063	+	C-rich	Low_complexity	Low_complexity	chr11	80209054	80209056	+	ENSMUST00000055056.15,ENSMUSG00000017686.16	Rhot1	ENSMUSG00000017686.16	ENSMUST00000055056.15	protein_coding	chr11:80209055-80267907
chr11	80209018	80209053	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	80209018	80209020	+	ENSMUST00000077451.13,ENSMUSG00000017686.16	Rhot1	ENSMUSG00000017686.16	ENSMUST00000077451.13	protein_coding	chr11:80209019-80266812
chr11	80368362	80368508	-	B1_Mus2	SINE	Alu	chr11	80368394	80368396	-	ENSMUST00000149614.1,ENSMUSG00000057181.15	5730455P16Rik	ENSMUSG00000057181.15	ENSMUST00000149614.1	protein_coding	chr11:80363979-80368395
chr11	80476984	80477026	+	G-rich	Low_complexity	Low_complexity	chr11	80477022	80477024	+	ENSMUST00000053413.11,ENSMUSG00000048895.13	Cdk5r1	ENSMUSG00000048895.13	ENSMUST00000053413.11	protein_coding	chr11:80477023-80481184
chr11	81587336	81587500	-	L2	LINE	L2	chr11	81587360	81587362	+	ENSMUST00000156193.1,ENSMUSG00000087534.1	Gm11418	ENSMUSG00000087534.1	ENSMUST00000156193.1	antisense	chr11:81587361-81593478
chr11	81985317	81985442	+	ORR1E	LTR	ERVL-MaLR	chr11	81985405	81985407	+	ENSMUST00000150772.1,ENSMUSG00000084996.1	Gm11419	ENSMUSG00000084996.1	ENSMUST00000150772.1	lincRNA	chr11:81985406-81988769
chr11	82019824	82020308	-	MLT2B1	LTR	ERVL	chr11	82019966	82019968	-	ENSMUST00000207942.1,ENSMUSG00000109297.1	Gm31522	ENSMUSG00000109297.1	ENSMUST00000207942.1	lincRNA	chr11:81983119-82019967
chr11	82596072	82596179	-	U6	snRNA	snRNA	chr11	82596178	82596180	-	ENSMUST00000083267.1,ENSMUSG00000065201.1	Gm24612	ENSMUSG00000065201.1	ENSMUST00000083267.1	snRNA	chr11:82596073-82596179
chr11	82633227	82633721	+	BGLII_B	LTR	ERVK	chr11	82633352	82633354	+	ENSMUST00000125600.1,ENSMUSG00000069796.3	Gm11426	ENSMUSG00000069796.3	ENSMUST00000125600.1	lincRNA	chr11:82633353-82636309
chr11	82933593	82933638	-	ID4	SINE	ID	chr11	82933601	82933603	+	ENSMUST00000142336.1,ENSMUSG00000018845.14	Unc45b	ENSMUSG00000018845.14	ENSMUST00000142336.1	protein_coding	chr11:82933602-82937757
chr11	82954594	82954705	+	MER89	LTR	ERV1	chr11	82954660	82954662	+	ENSMUST00000108157.1,ENSMUSG00000054404.13	Slfn5	ENSMUSG00000054404.13	ENSMUST00000108157.1	protein_coding	chr11:82954661-82961906
chr11	82975095	82976351	+	RLTR17D_Mm	LTR	ERVK	chr11	82975584	82975586	-	ENSMUST00000215937.1,ENSMUSG00000111857.1	1190001M18Rik	ENSMUSG00000111857.1	ENSMUST00000215937.1	lincRNA	chr11:82974316-82975585
chr11	83071001	83071494	-	MT2_Mm	LTR	ERVL	chr11	83071245	83071247	-	ENSMUST00000214134.1,ENSMUSG00000111713.1	Gm20234	ENSMUSG00000111713.1	ENSMUST00000214134.1	antisense	chr11:83065752-83071246
chr11	83088969	83095208	-	L1Md_F2	LINE	L1	chr11	83094219	83094221	+	ENSMUST00000213219.1,ENSMUSG00000111016.1	Gm48462	ENSMUSG00000111016.1	ENSMUST00000213219.1	lincRNA	chr11:83094220-83098070
chr11	83125176	83125291	-	ORR1A2	LTR	ERVL-MaLR	chr11	83125179	83125181	-	ENSMUST00000214874.1,ENSMUSG00000111344.1	Gm48467	ENSMUSG00000111344.1	ENSMUST00000214874.1	processed_pseudogene	chr11:83124820-83125180
chr11	83136809	83136924	-	ORR1A2	LTR	ERVL-MaLR	chr11	83136816	83136818	-	ENSMUST00000215976.1,ENSMUSG00000111168.1	Gm48468	ENSMUSG00000111168.1	ENSMUST00000215976.1	processed_pseudogene	chr11:83136724-83136817
chr11	83148497	83148612	-	ORR1A2	LTR	ERVL-MaLR	chr11	83148504	83148506	-	ENSMUST00000214610.1,ENSMUSG00000111480.1	Gm48469	ENSMUSG00000111480.1	ENSMUST00000214610.1	processed_pseudogene	chr11:83148412-83148505
chr11	83160164	83160279	-	ORR1A2	LTR	ERVL-MaLR	chr11	83160171	83160173	-	ENSMUST00000217640.1,ENSMUSG00000110941.1	Gm48477	ENSMUSG00000110941.1	ENSMUST00000217640.1	processed_pseudogene	chr11:83160079-83160172
chr11	83171834	83171949	-	ORR1A2	LTR	ERVL-MaLR	chr11	83171841	83171843	-	ENSMUST00000213855.1,ENSMUSG00000111152.1	Gm48490	ENSMUSG00000111152.1	ENSMUST00000213855.1	processed_pseudogene	chr11:83171749-83171842
chr11	83191262	83191511	+	RLTR12BD_Mm	LTR	ERVK	chr11	83191329	83191331	+	ENSMUST00000019130.7,ENSMUSG00000018986.10	Slfn3	ENSMUSG00000018986.10	ENSMUST00000019130.7	protein_coding	chr11:83191330-83215154
chr11	83191262	83191511	+	RLTR12BD_Mm	LTR	ERVK	chr11	83191332	83191334	+	ENSMUST00000214041.1,ENSMUSG00000018986.10	Slfn3	ENSMUSG00000018986.10	ENSMUST00000214041.1	protein_coding	chr11:83191333-83215140
chr11	83205894	83209757	-	L1Md_F	LINE	L1	chr11	83208795	83208797	+	ENSMUST00000216599.1,ENSMUSG00000018986.10	Slfn3	ENSMUSG00000018986.10	ENSMUST00000216599.1	protein_coding	chr11:83208796-83214823
chr11	83223443	83223754	+	RLTR12BD_Mm	LTR	ERVK	chr11	83223575	83223577	+	ENSMUST00000145461.7,ENSMUSG00000087107.8	AI662270	ENSMUSG00000087107.8	ENSMUST00000145461.7	processed_transcript	chr11:83223576-83225869
chr11	83223443	83223754	+	RLTR12BD_Mm	LTR	ERVK	chr11	83223575	83223577	+	ENSMUST00000216842.1,ENSMUSG00000087107.8	AI662270	ENSMUSG00000087107.8	ENSMUST00000216842.1	processed_transcript	chr11:83223576-83226152
chr11	83223443	83223754	+	RLTR12BD_Mm	LTR	ERVK	chr11	83223575	83223577	+	ENSMUST00000143673.1,ENSMUSG00000087107.8	AI662270	ENSMUSG00000087107.8	ENSMUST00000143673.1	processed_transcript	chr11:83223576-83226604
chr11	83243722	83243950	+	L1M4c	LINE	L1	chr11	83243859	83243861	+	ENSMUST00000117952.2,ENSMUSG00000083161.2	Gm11427	ENSMUSG00000083161.2	ENSMUST00000117952.2	transcribed_unprocessed_pseudogene	chr11:83243860-83260564
chr11	83271497	83271684	+	U2	snRNA	snRNA	chr11	83271497	83271499	+	ENSMUST00000082922.1,ENSMUSG00000064856.1	Gm23444	ENSMUSG00000064856.1	ENSMUST00000082922.1	snRNA	chr11:83271498-83271688
chr11	83521155	83521262	+	U6	snRNA	snRNA	chr11	83521155	83521157	+	ENSMUST00000083373.1,ENSMUSG00000065307.1	Gm23247	ENSMUSG00000065307.1	ENSMUST00000083373.1	snRNA	chr11:83521156-83521262
chr11	83582041	83582647	-	RMER20B	LTR	ERVK	chr11	83582055	83582057	+	ENSMUST00000125626.1,ENSMUSG00000051832.7	E230016K23Rik	ENSMUSG00000051832.7	ENSMUST00000125626.1	processed_transcript	chr11:83582056-83623693
chr11	83582041	83582647	-	RMER20B	LTR	ERVK	chr11	83582083	83582085	+	ENSMUST00000141082.1,ENSMUSG00000051832.7	E230016K23Rik	ENSMUSG00000051832.7	ENSMUST00000141082.1	processed_transcript	chr11:83582084-83602071
chr11	83621569	83621695	-	Lx6	LINE	L1	chr11	83621661	83621663	+	ENSMUST00000171408.1,ENSMUSG00000051832.7	E230016K23Rik	ENSMUSG00000051832.7	ENSMUST00000171408.1	processed_transcript	chr11:83621662-83622903
chr11	83681669	83681900	-	L1_Mus2	LINE	L1	chr11	83681725	83681727	-	ENSMUST00000121582.1,ENSMUSG00000083932.1	Gm11438	ENSMUSG00000083932.1	ENSMUST00000121582.1	processed_pseudogene	chr11:83681538-83681726
chr11	83844664	83844890	+	7SK	RNA	RNA	chr11	83844664	83844666	+	ENSMUST00000122717.1,ENSMUSG00000084666.1	Gm23211	ENSMUSG00000084666.1	ENSMUST00000122717.1	misc_RNA	chr11:83844665-83844972
chr11	83849480	83849615	+	(TG)n	Simple_repeat	Simple_repeat	chr11	83849492	83849494	-	ENSMUST00000135268.1,ENSMUSG00000085235.1	Gm12576	ENSMUSG00000085235.1	ENSMUST00000135268.1	lincRNA	chr11:83817682-83849493
chr11	84068724	84068840	-	PB1D9	SINE	Alu	chr11	84068800	84068802	-	ENSMUST00000018792.11,ENSMUSG00000018648.15	Dusp14	ENSMUSG00000018648.15	ENSMUST00000018792.11	protein_coding	chr11:84048041-84068801
chr11	84087395	84087510	+	B1_Mur2	SINE	Alu	chr11	84087459	84087461	-	ENSMUST00000125566.1,ENSMUSG00000018651.14	Tada2a	ENSMUSG00000018651.14	ENSMUST00000125566.1	protein_coding	chr11:84082038-84087460
chr11	84129433	84129611	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr11	84129599	84129601	-	ENSMUST00000018795.12,ENSMUSG00000018651.14	Tada2a	ENSMUSG00000018651.14	ENSMUST00000018795.12	protein_coding	chr11:84078920-84129600
chr11	84189498	84189660	+	RSINE1	SINE	B4	chr11	84189592	84189594	+	ENSMUST00000194891.1,ENSMUSG00000103122.1	Gm37391	ENSMUSG00000103122.1	ENSMUST00000194891.1	TEC	chr11:84189593-84191910
chr11	84777808	84777926	-	MamRep4096	DNA	hAT?	chr11	84777828	84777830	-	ENSMUST00000155046.1,ENSMUSG00000087407.1	Gm11431	ENSMUSG00000087407.1	ENSMUST00000155046.1	lincRNA	chr11:84763855-84777829
chr11	84870781	84870838	+	G-rich	Low_complexity	Low_complexity	chr11	84870788	84870790	-	ENSMUST00000108081.8,ENSMUSG00000020530.14	Ggnbp2	ENSMUSG00000020530.14	ENSMUST00000108081.8	protein_coding	chr11:84832361-84870789
chr11	84870781	84870838	+	G-rich	Low_complexity	Low_complexity	chr11	84870816	84870818	-	ENSMUST00000168434.7,ENSMUSG00000020530.14	Ggnbp2	ENSMUSG00000020530.14	ENSMUST00000168434.7	protein_coding	chr11:84832361-84870817
chr11	85139921	85140090	+	C-rich	Low_complexity	Low_complexity	chr11	85140037	85140039	-	ENSMUST00000108075.8,ENSMUSG00000000804.14	Usp32	ENSMUSG00000000804.14	ENSMUST00000108075.8	protein_coding	chr11:84984442-85140038
chr11	85139921	85140090	+	C-rich	Low_complexity	Low_complexity	chr11	85139967	85139969	-	ENSMUST00000172595.1,ENSMUSG00000000804.14	Usp32	ENSMUSG00000000804.14	ENSMUST00000172595.1	protein_coding	chr11:85100224-85139968
chr11	85139921	85140090	+	C-rich	Low_complexity	Low_complexity	chr11	85139928	85139930	-	ENSMUST00000174809.1,ENSMUSG00000000804.14	Usp32	ENSMUSG00000000804.14	ENSMUST00000174809.1	protein_coding	chr11:85103680-85139929
chr11	85163076	85163183	+	U6	snRNA	snRNA	chr11	85163076	85163078	+	ENSMUST00000083077.1,ENSMUSG00000065011.1	Gm23506	ENSMUSG00000065011.1	ENSMUST00000083077.1	snRNA	chr11:85163077-85163183
chr11	85493759	85493904	+	U1	snRNA	snRNA	chr11	85493758	85493760	+	ENSMUST00000157154.1,ENSMUSG00000087779.1	Gm23765	ENSMUSG00000087779.1	ENSMUST00000157154.1	snRNA	chr11:85493759-85493905
chr11	85760531	85760723	-	MIR3	SINE	MIR	chr11	85760701	85760703	-	ENSMUST00000175537.1,ENSMUSG00000093278.1	Mir5110	ENSMUSG00000093278.1	ENSMUST00000175537.1	miRNA	chr11:85760616-85760702
chr11	86238827	86239011	-	B3	SINE	B2	chr11	86238882	86238884	-	ENSMUST00000127745.1,ENSMUSG00000018068.13	Ints2	ENSMUSG00000018068.13	ENSMUST00000127745.1	protein_coding	chr11:86235612-86238883
chr11	86332114	86332336	-	ID_B1	SINE	B4	chr11	86332182	86332184	-	ENSMUST00000144983.1,ENSMUSG00000034297.14	Med13	ENSMUSG00000034297.14	ENSMUST00000144983.1	protein_coding	chr11:86331006-86332183
chr11	86333206	86333305	+	HY1	scRNA	scRNA	chr11	86333205	86333207	+	ENSMUST00000157605.1,ENSMUSG00000088230.1	Gm25427	ENSMUSG00000088230.1	ENSMUST00000157605.1	misc_RNA	chr11:86333206-86333308
chr11	86408825	86408924	+	5S	rRNA	rRNA	chr11	86408825	86408827	+	ENSMUST00000157466.1,ENSMUSG00000088091.1	Gm23667	ENSMUSG00000088091.1	ENSMUST00000157466.1	rRNA	chr11:86408826-86408945
chr11	86437310	86437415	-	U6	snRNA	snRNA	chr11	86437414	86437416	-	ENSMUST00000082592.1,ENSMUSG00000064526.1	Gm26439	ENSMUSG00000064526.1	ENSMUST00000082592.1	snRNA	chr11:86437310-86437415
chr11	86437415	86437444	+	AT_rich	Low_complexity	Low_complexity	chr11	86437414	86437416	-	ENSMUST00000082592.1,ENSMUSG00000064526.1	Gm26439	ENSMUSG00000064526.1	ENSMUST00000082592.1	snRNA	chr11:86437310-86437415
chr11	86671143	86671301	+	L2	LINE	L2	chr11	86671178	86671180	-	ENSMUST00000143991.2,ENSMUSG00000018171.9	Vmp1	ENSMUSG00000018171.9	ENSMUST00000143991.2	protein_coding	chr11:86664654-86671179
chr11	87115843	87115964	-	B1_Mur3	SINE	Alu	chr11	87115868	87115870	+	ENSMUST00000131202.1,ENSMUSG00000020492.11	Ska2	ENSMUSG00000020492.11	ENSMUST00000131202.1	protein_coding	chr11:87115869-87122107
chr11	87318693	87318799	-	U6	snRNA	snRNA	chr11	87318798	87318800	-	ENSMUST00000157376.1,ENSMUSG00000088001.1	Gm22883	ENSMUSG00000088001.1	ENSMUST00000157376.1	snRNA	chr11:87318694-87318799
chr11	87358601	87358654	+	CT-rich	Low_complexity	Low_complexity	chr11	87358636	87358638	-	ENSMUST00000155154.1,ENSMUSG00000046442.4	Ppm1e	ENSMUSG00000046442.4	ENSMUST00000155154.1	protein_coding	chr11:87243065-87358637
chr11	87404420	87404446	+	(T)n	Simple_repeat	Simple_repeat	chr11	87404422	87404424	-	ENSMUST00000129400.1,ENSMUSG00000007646.13	Rad51c	ENSMUSG00000007646.13	ENSMUST00000129400.1	protein_coding	chr11:87379384-87404423
chr11	87405018	87405066	+	(CACG)n	Simple_repeat	Simple_repeat	chr11	87405064	87405066	+	ENSMUST00000060835.11,ENSMUSG00000010342.16	Tex14	ENSMUSG00000010342.16	ENSMUST00000060835.11	protein_coding	chr11:87405065-87555823
chr11	87422866	87423031	+	U1	snRNA	snRNA	chr11	87422866	87422868	+	ENSMUST00000093684.1,ENSMUSG00000095969.1	Rnu1a1	ENSMUSG00000095969.1	ENSMUST00000093684.1	snRNA	chr11:87422867-87423030
chr11	87426715	87426879	+	U1	snRNA	snRNA	chr11	87426715	87426717	+	ENSMUST00000082761.1,ENSMUSG00000096205.1	Gm22068	ENSMUSG00000096205.1	ENSMUST00000082761.1	snRNA	chr11:87426716-87426879
chr11	87427574	87427707	+	B1_Mur2	SINE	Alu	chr11	87427590	87427592	+	ENSMUST00000156483.1,ENSMUSG00000010342.16	Tex14	ENSMUSG00000010342.16	ENSMUST00000156483.1	protein_coding	chr11:87427591-87484766
chr11	87443236	87443450	+	U3	snRNA	snRNA	chr11	87443236	87443238	+	ENSMUST00000200547.1,ENSMUSG00000105025.1	Rnu3b1	ENSMUSG00000105025.1	ENSMUST00000200547.1	snoRNA	chr11:87443237-87443451
chr11	87443236	87443450	+	U3	snRNA	snRNA	chr11	87443236	87443238	+	ENSMUST00000183812.1,ENSMUSG00000098943.1	Rnu3b1	ENSMUSG00000098943.1	ENSMUST00000183812.1	snoRNA	chr11:87443237-87443452
chr11	87444473	87444580	-	U6	snRNA	snRNA	chr11	87444579	87444581	-	ENSMUST00000157559.1,ENSMUSG00000088184.1	Gm23137	ENSMUSG00000088184.1	ENSMUST00000157559.1	snRNA	chr11:87444474-87444580
chr11	87444580	87444616	+	AT_rich	Low_complexity	Low_complexity	chr11	87444579	87444581	-	ENSMUST00000157559.1,ENSMUSG00000088184.1	Gm23137	ENSMUSG00000088184.1	ENSMUST00000157559.1	snRNA	chr11:87444474-87444580
chr11	87448626	87448840	+	U3	snRNA	snRNA	chr11	87448626	87448628	+	ENSMUST00000198628.1,ENSMUSG00000104856.1	Rnu3b3	ENSMUSG00000104856.1	ENSMUST00000198628.1	snoRNA	chr11:87448627-87448841
chr11	87448626	87448840	+	U3	snRNA	snRNA	chr11	87448626	87448628	+	ENSMUST00000093738.2,ENSMUSG00000099291.1	Rnu3b3	ENSMUSG00000099291.1	ENSMUST00000093738.2	snoRNA	chr11:87448627-87448842
chr11	87462285	87462499	+	U3	snRNA	snRNA	chr11	87462285	87462287	+	ENSMUST00000184171.1,ENSMUSG00000098641.1	Rnu3b4	ENSMUSG00000098641.1	ENSMUST00000184171.1	snoRNA	chr11:87462286-87462500
chr11	87462285	87462499	+	U3	snRNA	snRNA	chr11	87462285	87462287	+	ENSMUST00000199460.1,ENSMUSG00000104896.1	Rnu3b4	ENSMUSG00000104896.1	ENSMUST00000199460.1	snoRNA	chr11:87462286-87462501
chr11	87471367	87471581	+	U3	snRNA	snRNA	chr11	87471367	87471369	+	ENSMUST00000185073.1,ENSMUSG00000098925.1	Rnu3b2	ENSMUSG00000098925.1	ENSMUST00000185073.1	snoRNA	chr11:87471368-87471582
chr11	87471367	87471581	+	U3	snRNA	snRNA	chr11	87471367	87471369	+	ENSMUST00000196353.1,ENSMUSG00000105115.1	Rnu3b2	ENSMUSG00000105115.1	ENSMUST00000196353.1	snoRNA	chr11:87471368-87471583
chr11	87701362	87701475	+	X8_LINE	LINE	CR1	chr11	87701395	87701397	+	ENSMUST00000137077.1,ENSMUSG00000085972.1	1110028F11Rik	ENSMUSG00000085972.1	ENSMUST00000137077.1	sense_intronic	chr11:87701396-87705331
chr11	87871722	87871788	-	BC1_Mm	scRNA	scRNA	chr11	87871767	87871769	-	ENSMUST00000125590.1,ENSMUSG00000052234.2	Epx	ENSMUSG00000052234.2	ENSMUST00000125590.1	protein_coding	chr11:87869373-87871768
chr11	87914988	87915016	+	(TTGG)n	Simple_repeat	Simple_repeat	chr11	87915002	87915004	-	ENSMUST00000074874.4,ENSMUSG00000060787.9	Olfr464	ENSMUSG00000060787.9	ENSMUST00000074874.4	protein_coding	chr11:87913920-87915003
chr11	88048566	88048614	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	88048566	88048568	+	ENSMUST00000134824.8,ENSMUSG00000018379.17	Srsf1	ENSMUSG00000018379.17	ENSMUST00000134824.8	protein_coding	chr11:88048567-88051472
chr11	88048566	88048614	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	88048588	88048590	+	ENSMUST00000172186.1,ENSMUSG00000018379.17	Srsf1	ENSMUSG00000018379.17	ENSMUST00000172186.1	protein_coding	chr11:88048589-88051122
chr11	88099220	88099320	+	GC_rich	Low_complexity	Low_complexity	chr11	88099289	88099291	+	ENSMUST00000133149.1,ENSMUSG00000018378.13	Cuedc1	ENSMUSG00000018378.13	ENSMUST00000133149.1	protein_coding	chr11:88099290-88185365
chr11	88905121	88905218	+	U6	snRNA	snRNA	chr11	88905120	88905122	+	ENSMUST00000083078.1,ENSMUSG00000065012.1	Gm23507	ENSMUSG00000065012.1	ENSMUST00000083078.1	snRNA	chr11:88905121-88905227
chr11	88905745	88906017	-	MLT1F2	LTR	ERVL-MaLR	chr11	88905927	88905929	+	ENSMUST00000139592.2,ENSMUSG00000087338.2	Scpep1os	ENSMUSG00000087338.2	ENSMUST00000139592.2	antisense	chr11:88905928-88936061
chr11	88966800	88967066	+	RMER6BA	LTR	ERVK	chr11	88966916	88966918	-	ENSMUST00000061938.13,ENSMUSG00000057534.13	Elobl	ENSMUSG00000057534.13	ENSMUST00000061938.13	protein_coding	chr11:88964658-88966917
chr11	88966800	88967066	+	RMER6BA	LTR	ERVK	chr11	88966930	88966932	-	ENSMUST00000121228.1,ENSMUSG00000057534.13	Elobl	ENSMUSG00000057534.13	ENSMUST00000121228.1	protein_coding	chr11:88964658-88966931
chr11	88970172	88970393	-	RMER6BA	LTR	ERVK	chr11	88970251	88970253	+	ENSMUST00000107898.6,ENSMUSG00000033983.13	Coil	ENSMUSG00000033983.13	ENSMUST00000107898.6	protein_coding	chr11:88970252-88991613
chr11	88987526	88987673	+	Tigger6a	DNA	TcMar-Tigger	chr11	88987578	88987580	+	ENSMUST00000140549.1,ENSMUSG00000033983.13	Coil	ENSMUSG00000033983.13	ENSMUST00000140549.1	protein_coding	chr11:88987579-88990954
chr11	89064632	89064784	-	B1_Mus1	SINE	Alu	chr11	89064728	89064730	+	ENSMUST00000178493.7,ENSMUSG00000063109.13	Dgkeos	ENSMUSG00000063109.13	ENSMUST00000178493.7	antisense	chr11:89064729-89069098
chr11	89066785	89066944	-	RSINE1	SINE	B4	chr11	89066849	89066851	-	ENSMUST00000107894.7,ENSMUSG00000000276.11	Dgke	ENSMUSG00000000276.11	ENSMUST00000107894.7	protein_coding	chr11:89035179-89066850
chr11	89136551	89136766	-	7SK	RNA	RNA	chr11	89136765	89136767	-	ENSMUST00000158860.1,ENSMUSG00000089485.1	Gm24734	ENSMUSG00000089485.1	ENSMUST00000158860.1	misc_RNA	chr11:89136505-89136766
chr11	90143540	90143894	-	MTD	LTR	ERVL-MaLR	chr11	90143623	90143625	-	ENSMUST00000142279.1,ENSMUSG00000085074.1	Gm11494	ENSMUSG00000085074.1	ENSMUST00000142279.1	lincRNA	chr11:90134842-90143624
chr11	90185036	90185127	-	5S	rRNA	rRNA	chr11	90185126	90185128	-	ENSMUST00000104518.1,ENSMUSG00000077706.1	n-R5s72	ENSMUSG00000077706.1	ENSMUST00000104518.1	rRNA	chr11:90185009-90185127
chr11	90249392	90249481	+	G-rich	Low_complexity	Low_complexity	chr11	90249455	90249457	+	ENSMUST00000107887.7,ENSMUSG00000003948.17	Mmd	ENSMUSG00000003948.17	ENSMUST00000107887.7	protein_coding	chr11:90249456-90268465
chr11	90249392	90249481	+	G-rich	Low_complexity	Low_complexity	chr11	90249475	90249477	+	ENSMUST00000004050.6,ENSMUSG00000003948.17	Mmd	ENSMUSG00000003948.17	ENSMUST00000004050.6	protein_coding	chr11:90249476-90278589
chr11	92024168	92024425	-	Lx5b	LINE	L1	chr11	92024412	92024414	-	ENSMUST00000175372.1,ENSMUSG00000093113.1	Gm22702	ENSMUSG00000093113.1	ENSMUST00000175372.1	miRNA	chr11:92024345-92024413
chr11	93413217	93413324	-	U6	snRNA	snRNA	chr11	93413323	93413325	-	ENSMUST00000082809.1,ENSMUSG00000064743.1	Gm24856	ENSMUSG00000064743.1	ENSMUST00000082809.1	snRNA	chr11:93413218-93413324
chr11	93413324	93413335	-	L1Md_F3	LINE	L1	chr11	93413323	93413325	-	ENSMUST00000082809.1,ENSMUSG00000064743.1	Gm24856	ENSMUSG00000064743.1	ENSMUST00000082809.1	snRNA	chr11:93413218-93413324
chr11	93917746	93917782	+	(TTGG)n	Simple_repeat	Simple_repeat	chr11	93917755	93917757	+	ENSMUST00000155518.7,ENSMUSG00000059474.13	Mbtd1	ENSMUSG00000059474.13	ENSMUST00000155518.7	protein_coding	chr11:93917756-93932490
chr11	93925493	93925612	+	PB1D9	SINE	Alu	chr11	93925539	93925541	+	ENSMUST00000155841.1,ENSMUSG00000059474.13	Mbtd1	ENSMUSG00000059474.13	ENSMUST00000155841.1	protein_coding	chr11:93925540-93937201
chr11	94297011	94297119	+	T-rich	Low_complexity	Low_complexity	chr11	94297066	94297068	-	ENSMUST00000132623.8,ENSMUSG00000020863.15	Luc7l3	ENSMUSG00000020863.15	ENSMUST00000132623.8	protein_coding	chr11:94291061-94297067
chr11	94298883	94299207	+	MER21B	LTR	ERVL	chr11	94299030	94299032	-	ENSMUST00000135311.7,ENSMUSG00000020863.15	Luc7l3	ENSMUSG00000020863.15	ENSMUST00000135311.7	protein_coding	chr11:94297015-94299031
chr11	94333414	94333560	+	B1_Mus2	SINE	Alu	chr11	94333452	94333454	+	ENSMUST00000149867.1,ENSMUSG00000020864.13	Ankrd40	ENSMUSG00000020864.13	ENSMUST00000149867.1	protein_coding	chr11:94333453-94334583
chr11	94367898	94367949	+	B1F	SINE	Alu	chr11	94367922	94367924	-	ENSMUST00000155253.1,ENSMUSG00000020865.16	Abcc3	ENSMUSG00000020865.16	ENSMUST00000155253.1	protein_coding	chr11:94364210-94367923
chr11	94607381	94607451	+	(GGAA)n	Simple_repeat	Simple_repeat	chr11	94607401	94607403	+	ENSMUST00000117457.1,ENSMUSG00000082945.1	Gm11540	ENSMUSG00000082945.1	ENSMUST00000117457.1	unprocessed_pseudogene	chr11:94607402-94609036
chr11	94629789	94629886	+	G-rich	Low_complexity	Low_complexity	chr11	94629813	94629815	+	ENSMUST00000138782.1,ENSMUSG00000020869.8	Lrrc59	ENSMUSG00000020869.8	ENSMUST00000138782.1	protein_coding	chr11:94629814-94635252
chr11	94740230	94741833	+	RLTR14-int	LTR	ERV1	chr11	94741781	94741783	+	ENSMUST00000021240.6,ENSMUSG00000020870.7	Cdc34b	ENSMUSG00000020870.7	ENSMUST00000021240.6	protein_coding	chr11:94741782-94743014
chr11	94740230	94741833	+	RLTR14-int	LTR	ERV1	chr11	94741781	94741783	+	ENSMUST00000188741.1,ENSMUSG00000020870.7	Cdc34b	ENSMUSG00000020870.7	ENSMUST00000188741.1	protein_coding	chr11:94741782-94743033
chr11	94938711	94939326	-	L1MC4	LINE	L1	chr11	94939011	94939013	+	ENSMUST00000148593.1,ENSMUSG00000001506.10	Col1a1	ENSMUSG00000001506.10	ENSMUST00000148593.1	protein_coding	chr11:94939012-94939741
chr11	94958777	94958896	+	HY1	scRNA	scRNA	chr11	94958777	94958779	+	ENSMUST00000158779.1,ENSMUSG00000089404.1	Gm24877	ENSMUSG00000089404.1	ENSMUST00000158779.1	misc_RNA	chr11:94958778-94958893
chr11	94991031	94991057	+	(GGGA)n	Simple_repeat	Simple_repeat	chr11	94991034	94991036	+	ENSMUST00000038696.11,ENSMUSG00000038976.12	Ppp1r9b	ENSMUSG00000038976.12	ENSMUST00000038696.11	protein_coding	chr11:94991035-95006899
chr11	94996058	94996175	+	CT-rich	Low_complexity	Low_complexity	chr11	94996063	94996065	+	ENSMUST00000107748.1,ENSMUSG00000038976.12	Ppp1r9b	ENSMUSG00000038976.12	ENSMUST00000107748.1	protein_coding	chr11:94996064-95006899
chr11	95010239	95010293	+	(CA)n	Simple_repeat	Simple_repeat	chr11	95010280	95010282	+	ENSMUST00000124735.1,ENSMUSG00000047181.12	Samd14	ENSMUSG00000047181.12	ENSMUST00000124735.1	protein_coding	chr11:95010281-95020116
chr11	95029280	95029475	+	L2a	LINE	L2	chr11	95029423	95029425	-	ENSMUST00000129262.1,ENSMUSG00000038967.13	Pdk2	ENSMUSG00000038967.13	ENSMUST00000129262.1	protein_coding	chr11:95028728-95029424
chr11	95056056	95056211	+	MIRc	SINE	MIR	chr11	95056194	95056196	-	ENSMUST00000141693.1,ENSMUSG00000001507.16	Itga3	ENSMUSG00000001507.16	ENSMUST00000141693.1	protein_coding	chr11:95053225-95056195
chr11	95414131	95414291	+	(TG)n	Simple_repeat	Simple_repeat	chr11	95414242	95414244	+	ENSMUST00000127713.1,ENSMUSG00000057522.15	Spop	ENSMUSG00000057522.15	ENSMUST00000127713.1	protein_coding	chr11:95414243-95474335
chr11	95669900	95670004	+	PB1D10	SINE	Alu	chr11	95669951	95669953	+	ENSMUST00000180389.1,ENSMUSG00000097176.1	Gm26830	ENSMUSG00000097176.1	ENSMUST00000180389.1	lincRNA	chr11:95669952-95672719
chr11	95723498	95723591	-	B1_Mus1	SINE	Alu	chr11	95723586	95723588	+	ENSMUST00000100534.2,ENSMUSG00000075596.2	B130006D01Rik	ENSMUSG00000075596.2	ENSMUST00000100534.2	protein_coding	chr11:95723587-95726710
chr11	95859170	95859243	-	tRNA-Gln-CAA	tRNA	tRNA	chr11	95859173	95859175	-	ENSMUST00000153795.1,ENSMUSG00000085578.1	Gm11527	ENSMUSG00000085578.1	ENSMUST00000153795.1	lincRNA	chr11:95858162-95859174
chr11	96032677	96032891	+	U3	snRNA	snRNA	chr11	96032677	96032679	+	ENSMUST00000183609.1,ENSMUSG00000098425.1	Gm24949	ENSMUSG00000098425.1	ENSMUST00000183609.1	snoRNA	chr11:96032678-96032892
chr11	96083676	96083856	-	U2	snRNA	snRNA	chr11	96083855	96083857	-	ENSMUST00000082861.1,ENSMUSG00000064795.1	Gm22423	ENSMUSG00000064795.1	ENSMUST00000082861.1	snRNA	chr11:96083673-96083856
chr11	96328058	96328152	-	MER34	LTR	ERV1	chr11	96328061	96328063	+	ENSMUST00000123091.7,ENSMUSG00000048763.11	Hoxb3	ENSMUSG00000048763.11	ENSMUST00000123091.7	protein_coding	chr11:96328062-96344303
chr11	96350480	96350531	+	(T)n	Simple_repeat	Simple_repeat	chr11	96350524	96350526	+	ENSMUST00000182030.1,ENSMUSG00000075588.6	Hoxb2	ENSMUSG00000075588.6	ENSMUST00000182030.1	protein_coding	chr11:96350525-96353658
chr11	96464499	96464592	+	GC_rich	Low_complexity	Low_complexity	chr11	96464546	96464548	-	ENSMUST00000153012.1,ENSMUSG00000075586.4	Gm11529	ENSMUSG00000075586.4	ENSMUST00000153012.1	processed_transcript	chr11:96448323-96464547
chr11	96483605	96483980	+	MTC	LTR	ERVL-MaLR	chr11	96483781	96483783	+	ENSMUST00000149988.1,ENSMUSG00000057058.16	Skap1	ENSMUSG00000057058.16	ENSMUST00000149988.1	protein_coding	chr11:96483782-96493718
chr11	96849830	96849871	+	GC_rich	Low_complexity	Low_complexity	chr11	96849869	96849871	+	ENSMUST00000155696.1,ENSMUSG00000018672.15	Copz2	ENSMUSG00000018672.15	ENSMUST00000155696.1	protein_coding	chr11:96849870-96851590
chr11	96922475	96922650	-	MLT1C	LTR	ERVL-MaLR	chr11	96922492	96922494	-	ENSMUST00000134436.1,ENSMUSG00000085307.1	Gm11525	ENSMUSG00000085307.1	ENSMUST00000134436.1	antisense	chr11:96918941-96922493
chr11	96931259	96931439	+	(GGAGA)n	Simple_repeat	Simple_repeat	chr11	96931386	96931388	+	ENSMUST00000107633.1,ENSMUSG00000047040.9	Prr15l	ENSMUSG00000047040.9	ENSMUST00000107633.1	protein_coding	chr11:96931387-96935280
chr11	97051411	97051443	+	(CA)n	Simple_repeat	Simple_repeat	chr11	97051431	97051433	-	ENSMUST00000139752.1,ENSMUSG00000085262.1	Gm11574	ENSMUSG00000085262.1	ENSMUST00000139752.1	processed_transcript	chr11:97048691-97051432
chr11	97053374	97053564	+	B2_Mm2	SINE	B2	chr11	97053423	97053425	+	ENSMUST00000142406.1,ENSMUSG00000038534.18	Osbpl7	ENSMUSG00000038534.18	ENSMUST00000142406.1	protein_coding	chr11:97053424-97057365
chr11	97096914	97096937	+	B4	SINE	B4	chr11	97096932	97096934	+	ENSMUST00000119956.1,ENSMUSG00000084068.1	Gm11573	ENSMUSG00000084068.1	ENSMUST00000119956.1	processed_pseudogene	chr11:97096933-97097326
chr11	97151461	97151497	+	GC_rich	Low_complexity	Low_complexity	chr11	97151494	97151496	-	ENSMUST00000146374.2,ENSMUSG00000038517.15	Tbkbp1	ENSMUSG00000038517.15	ENSMUST00000146374.2	protein_coding	chr11:97148629-97151495
chr11	97187881	97187965	+	G-rich	Low_complexity	Low_complexity	chr11	97187880	97187882	-	ENSMUST00000001479.4,ENSMUSG00000001440.5	Kpnb1	ENSMUSG00000001440.5	ENSMUST00000001479.4	protein_coding	chr11:97159714-97187881
chr11	97241841	97241876	+	AT_rich	Low_complexity	Low_complexity	chr11	97241865	97241867	-	ENSMUST00000165489.7,ENSMUSG00000001441.13	Npepps	ENSMUSG00000001441.13	ENSMUST00000165489.7	protein_coding	chr11:97206933-97241866
chr11	97280060	97280187	+	C-rich	Low_complexity	Low_complexity	chr11	97280127	97280129	+	ENSMUST00000133160.2,ENSMUSG00000086680.2	Gm11592	ENSMUSG00000086680.2	ENSMUST00000133160.2	antisense	chr11:97280128-97282897
chr11	97280374	97280420	+	GA-rich	Low_complexity	Low_complexity	chr11	97280407	97280409	-	ENSMUST00000168743.7,ENSMUSG00000001441.13	Npepps	ENSMUSG00000001441.13	ENSMUST00000168743.7	protein_coding	chr11:97242634-97280408
chr11	97280536	97280569	+	(CGGG)n	Simple_repeat	Simple_repeat	chr11	97280553	97280555	-	ENSMUST00000163950.1,ENSMUSG00000001441.13	Npepps	ENSMUSG00000001441.13	ENSMUST00000163950.1	protein_coding	chr11:97257378-97280554
chr11	97280622	97280713	+	GC_rich	Low_complexity	Low_complexity	chr11	97280637	97280639	-	ENSMUST00000001480.13,ENSMUSG00000001441.13	Npepps	ENSMUSG00000001441.13	ENSMUST00000001480.13	protein_coding	chr11:97205844-97280638
chr11	97362539	97362563	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	97362550	97362552	+	ENSMUST00000045540.3,ENSMUSG00000038485.5	Socs7	ENSMUSG00000038485.5	ENSMUST00000045540.3	protein_coding	chr11:97362551-97398542
chr11	97575211	97575258	+	(TG)n	Simple_repeat	Simple_repeat	chr11	97575214	97575216	-	ENSMUST00000107596.8,ENSMUSG00000038453.16	Srcin1	ENSMUSG00000038453.16	ENSMUST00000107596.8	protein_coding	chr11:97509340-97575215
chr11	97575211	97575258	+	(TG)n	Simple_repeat	Simple_repeat	chr11	97575225	97575227	-	ENSMUST00000142123.1,ENSMUSG00000038453.16	Srcin1	ENSMUSG00000038453.16	ENSMUST00000142123.1	protein_coding	chr11:97551890-97575226
chr11	97598346	97598728	+	ORR1D1	LTR	ERVL-MaLR	chr11	97598510	97598512	+	ENSMUST00000131687.1,ENSMUSG00000085860.1	2410003L11Rik	ENSMUSG00000085860.1	ENSMUST00000131687.1	processed_transcript	chr11:97598511-97622893
chr11	97663392	97663433	+	(GGA)n	Simple_repeat	Simple_repeat	chr11	97663413	97663415	+	ENSMUST00000044730.11,ENSMUSG00000038437.11	Mllt6	ENSMUSG00000038437.11	ENSMUST00000044730.11	protein_coding	chr11:97663414-97685463
chr11	97699561	97699598	+	(GGGA)n	Simple_repeat	Simple_repeat	chr11	97699580	97699582	-	ENSMUST00000126185.1,ENSMUSG00000018537.16	Pcgf2	ENSMUSG00000018537.16	ENSMUST00000126185.1	protein_coding	chr11:97697199-97699581
chr11	97778491	97778656	+	B2_Mm1a	SINE	B2	chr11	97778634	97778636	-	ENSMUST00000150955.1,ENSMUSG00000071415.6	Rpl23	ENSMUSG00000071415.6	ENSMUST00000150955.1	protein_coding	chr11:97778056-97778635
chr11	97800243	97800307	+	G-rich	Low_complexity	Low_complexity	chr11	97800296	97800298	+	ENSMUST00000136723.7,ENSMUSG00000038366.15	Lasp1	ENSMUSG00000038366.15	ENSMUST00000136723.7	protein_coding	chr11:97800297-97824908
chr11	97800243	97800307	+	G-rich	Low_complexity	Low_complexity	chr11	97800302	97800304	+	ENSMUST00000134428.1,ENSMUSG00000038366.15	Lasp1	ENSMUSG00000038366.15	ENSMUST00000134428.1	protein_coding	chr11:97800303-97806919
chr11	97833383	97833473	-	PB1D11	SINE	Alu	chr11	97833423	97833425	+	ENSMUST00000107568.1,ENSMUSG00000038366.15	Lasp1	ENSMUSG00000038366.15	ENSMUST00000107568.1	protein_coding	chr11:97833424-97834384
chr11	97941477	97941878	-	Lx5b	LINE	L1	chr11	97941739	97941741	-	ENSMUST00000175272.1,ENSMUSG00000093013.1	Gm22461	ENSMUSG00000093013.1	ENSMUST00000175272.1	miRNA	chr11:97941671-97941740
chr11	98022612	98022648	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	98022633	98022635	-	ENSMUST00000017552.12,ENSMUSG00000020882.17	Cacnb1	ENSMUSG00000020882.17	ENSMUST00000017552.12	protein_coding	chr11:98001508-98022634
chr11	98022612	98022648	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	98022626	98022628	-	ENSMUST00000103144.9,ENSMUSG00000020882.17	Cacnb1	ENSMUSG00000020882.17	ENSMUST00000103144.9	protein_coding	chr11:98002901-98022627
chr11	98022612	98022648	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	98022633	98022635	-	ENSMUST00000092736.10,ENSMUSG00000020882.17	Cacnb1	ENSMUSG00000020882.17	ENSMUST00000092736.10	protein_coding	chr11:98004925-98022634
chr11	98022612	98022648	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	98022633	98022635	-	ENSMUST00000107562.1,ENSMUSG00000020882.17	Cacnb1	ENSMUSG00000020882.17	ENSMUST00000107562.1	protein_coding	chr11:98004925-98022634
chr11	98220396	98220460	-	PB1D9	SINE	Alu	chr11	98220400	98220402	+	ENSMUST00000145113.1,ENSMUSG00000003119.14	Cdk12	ENSMUSG00000003119.14	ENSMUST00000145113.1	protein_coding	chr11:98220401-98225522
chr11	98238540	98238709	-	B2_Mm1t	SINE	B2	chr11	98238617	98238619	+	ENSMUST00000184250.1,ENSMUSG00000098827.1	Gm27399	ENSMUSG00000098827.1	ENSMUST00000184250.1	miRNA	chr11:98238618-98238695
chr11	98273251	98273366	-	5S	rRNA	rRNA	chr11	98273365	98273367	-	ENSMUST00000122508.1,ENSMUSG00000084457.1	n-R5s73	ENSMUSG00000084457.1	ENSMUST00000122508.1	rRNA	chr11:98273260-98273366
chr11	98423291	98423380	-	U6	snRNA	snRNA	chr11	98423379	98423381	-	ENSMUST00000158598.1,ENSMUSG00000089223.1	Gm25048	ENSMUSG00000089223.1	ENSMUST00000158598.1	snRNA	chr11:98423290-98423380
chr11	98650638	98650766	+	B1_Mur1	SINE	Alu	chr11	98650658	98650660	+	ENSMUST00000136111.1,ENSMUSG00000017211.14	Gsdma2	ENSMUSG00000017211.14	ENSMUST00000136111.1	protein_coding	chr11:98650659-98652060
chr11	98795393	98795542	+	G-rich	Low_complexity	Low_complexity	chr11	98795515	98795517	+	ENSMUST00000037915.8,ENSMUSG00000052915.14	Msl1	ENSMUSG00000052915.14	ENSMUST00000037915.8	protein_coding	chr11:98795516-98807859
chr11	98795433	98795518	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr11	98795515	98795517	+	ENSMUST00000037915.8,ENSMUSG00000052915.14	Msl1	ENSMUSG00000052915.14	ENSMUST00000037915.8	protein_coding	chr11:98795516-98807859
chr11	98795739	98795812	+	C-rich	Low_complexity	Low_complexity	chr11	98795790	98795792	+	ENSMUST00000107485.7,ENSMUSG00000052915.14	Msl1	ENSMUSG00000052915.14	ENSMUST00000107485.7	protein_coding	chr11:98795791-98801052
chr11	98795739	98795812	+	C-rich	Low_complexity	Low_complexity	chr11	98795799	98795801	+	ENSMUST00000107487.9,ENSMUSG00000052915.14	Msl1	ENSMUSG00000052915.14	ENSMUST00000107487.9	protein_coding	chr11:98795800-98806434
chr11	98798640	98798729	+	ID4_	SINE	ID	chr11	98798653	98798655	+	ENSMUST00000037930.12,ENSMUSG00000052915.14	Msl1	ENSMUSG00000052915.14	ENSMUST00000037930.12	protein_coding	chr11:98798654-98805607
chr11	98946443	98946550	+	U6	snRNA	snRNA	chr11	98946443	98946445	+	ENSMUST00000082557.1,ENSMUSG00000064491.1	Gm22061	ENSMUSG00000064491.1	ENSMUST00000082557.1	snRNA	chr11:98946444-98946550
chr11	99006387	99006552	+	B2_Mm2	SINE	B2	chr11	99006521	99006523	-	ENSMUST00000144318.1,ENSMUSG00000020914.17	Top2a	ENSMUSG00000020914.17	ENSMUST00000144318.1	protein_coding	chr11:99003625-99006522
chr11	99022096	99022217	-	B1_Mus2	SINE	Alu	chr11	99022209	99022211	-	ENSMUST00000139730.1,ENSMUSG00000020914.17	Top2a	ENSMUSG00000020914.17	ENSMUST00000139730.1	protein_coding	chr11:99016593-99022210
chr11	99385975	99386264	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	99386096	99386098	-	ENSMUST00000211768.1,ENSMUSG00000019761.10	Krt10	ENSMUSG00000019761.10	ENSMUST00000211768.1	protein_coding	chr11:99385267-99386097
chr11	99856307	99856414	+	U6	snRNA	snRNA	chr11	99856307	99856309	+	ENSMUST00000083073.1,ENSMUSG00000065007.1	Gm26324	ENSMUSG00000065007.1	ENSMUST00000083073.1	snRNA	chr11:99856308-99856414
chr11	100350875	100350998	+	(GGAA)n	Simple_repeat	Simple_repeat	chr11	100350888	100350890	-	ENSMUST00000173304.1,ENSMUSG00000092509.1	Gm20394	ENSMUSG00000092509.1	ENSMUST00000173304.1	processed_transcript	chr11:100349696-100350889
chr11	100354006	100354072	+	CT-rich	Low_complexity	Low_complexity	chr11	100354039	100354041	-	ENSMUST00000173630.7,ENSMUSG00000006930.15	Hap1	ENSMUSG00000006930.15	ENSMUST00000173630.7	protein_coding	chr11:100349298-100354040
chr11	100373255	100373365	+	PB1D10	SINE	Alu	chr11	100373307	100373309	-	ENSMUST00000152774.1,ENSMUSG00000001552.14	Jup	ENSMUSG00000001552.14	ENSMUST00000152774.1	protein_coding	chr11:100372357-100373308
chr11	100442419	100442521	+	PB1D10	SINE	Alu	chr11	100442474	100442476	-	ENSMUST00000183660.1,ENSMUSG00000099193.1	Gm27374	ENSMUSG00000099193.1	ENSMUST00000183660.1	miRNA	chr11:100442395-100442475
chr11	100472681	100472741	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	100472740	100472742	-	ENSMUST00000056665.3,ENSMUSG00000048732.5	Klhl11	ENSMUSG00000048732.5	ENSMUST00000056665.3	protein_coding	chr11:100462614-100472741
chr11	100494198	100494626	+	IAPLTR2a	LTR	ERVK	chr11	100494198	100494200	-	ENSMUST00000152969.1,ENSMUSG00000020917.17	Acly	ENSMUSG00000020917.17	ENSMUST00000152969.1	protein_coding	chr11:100482259-100494199
chr11	100596637	100596712	+	PB1D10	SINE	Alu	chr11	100596707	100596709	-	ENSMUST00000148098.1,ENSMUSG00000014195.15	Dnajc7	ENSMUSG00000014195.15	ENSMUST00000148098.1	protein_coding	chr11:100591019-100596708
chr11	100696567	100696718	+	B1_Mus1	SINE	Alu	chr11	100696619	100696621	-	ENSMUST00000140543.1,ENSMUSG00000017830.15	Dhx58	ENSMUSG00000017830.15	ENSMUST00000140543.1	protein_coding	chr11:100695063-100696620
chr11	100879018	100879128	-	PB1D10	SINE	Alu	chr11	100879018	100879020	+	ENSMUST00000135272.1,ENSMUSG00000004043.14	Stat5a	ENSMUSG00000004043.14	ENSMUST00000135272.1	protein_coding	chr11:100879019-100880107
chr11	100890212	100890359	-	B1_Mus1	SINE	Alu	chr11	100890311	100890313	-	ENSMUST00000137093.7,ENSMUSG00000004040.16	Stat3	ENSMUSG00000004040.16	ENSMUST00000137093.7	protein_coding	chr11:100888222-100890312
chr11	100899300	100899497	+	MLT1L	LTR	ERVL-MaLR	chr11	100899306	100899308	-	ENSMUST00000156645.1,ENSMUSG00000004040.16	Stat3	ENSMUSG00000004040.16	ENSMUST00000156645.1	protein_coding	chr11:100893971-100899307
chr11	100905371	100905473	+	PB1D10	SINE	Alu	chr11	100905410	100905412	-	ENSMUST00000154170.1,ENSMUSG00000004040.16	Stat3	ENSMUSG00000004040.16	ENSMUST00000154170.1	protein_coding	chr11:100902737-100905411
chr11	101071384	101071660	-	MTD	LTR	ERVL-MaLR	chr11	101071551	101071553	+	ENSMUST00000140735.2,ENSMUSG00000001751.9	Naglu	ENSMUSG00000001751.9	ENSMUST00000140735.2	protein_coding	chr11:101071552-101076571
chr11	101082544	101082579	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	101082564	101082566	+	ENSMUST00000001806.9,ENSMUSG00000001755.12	Coasy	ENSMUSG00000001755.12	ENSMUST00000001806.9	protein_coding	chr11:101082565-101086619
chr11	101140498	101140591	-	MER5A	DNA	hAT-Charlie	chr11	101140508	101140510	-	ENSMUST00000175021.2,ENSMUSG00000092762.2	Gm27626	ENSMUSG00000092762.2	ENSMUST00000175021.2	miRNA	chr11:101140454-101140509
chr11	101171349	101171416	+	C-rich	Low_complexity	Low_complexity	chr11	101171350	101171352	-	ENSMUST00000043397.13,ENSMUSG00000035172.15	Plekhh3	ENSMUSG00000035172.15	ENSMUST00000043397.13	protein_coding	chr11:101162679-101171351
chr11	101176017	101176112	+	(GA)n	Simple_repeat	Simple_repeat	chr11	101176040	101176042	+	ENSMUST00000103109.3,ENSMUSG00000017167.6	Cntnap1	ENSMUSG00000017167.6	ENSMUST00000103109.3	protein_coding	chr11:101176041-101190724
chr11	101246540	101246568	+	(CTG)n	Simple_repeat	Simple_repeat	chr11	101246566	101246568	+	ENSMUST00000151830.1,ENSMUSG00000001240.13	Ramp2	ENSMUSG00000001240.13	ENSMUST00000151830.1	protein_coding	chr11:101246567-101247636
chr11	101316929	101316983	+	G-rich	Low_complexity	Low_complexity	chr11	101316976	101316978	+	ENSMUST00000151385.1,ENSMUSG00000078652.9	Psme3	ENSMUSG00000078652.9	ENSMUST00000151385.1	protein_coding	chr11:101316977-101320594
chr11	101397670	101397768	-	U2	snRNA	snRNA	chr11	101397767	101397769	-	ENSMUST00000082825.1,ENSMUSG00000064759.1	Gm25475	ENSMUSG00000064759.1	ENSMUST00000082825.1	snRNA	chr11:101397589-101397768
chr11	101414463	101414656	-	B2_Mm1a	SINE	B2	chr11	101414578	101414580	-	ENSMUST00000189049.1,ENSMUSG00000075528.13	Aarsd1	ENSMUSG00000075528.13	ENSMUST00000189049.1	protein_coding	chr11:101413763-101414579
chr11	101468164	101468334	+	G-rich	Low_complexity	Low_complexity	chr11	101468174	101468176	+	ENSMUST00000001347.6,ENSMUSG00000001313.12	Rnd2	ENSMUSG00000001313.12	ENSMUST00000001347.6	protein_coding	chr11:101468175-101471853
chr11	101555785	101555884	-	PB1	SINE	Alu	chr11	101555865	101555867	+	ENSMUST00000136185.1,ENSMUSG00000017119.19	Nbr1	ENSMUSG00000017119.19	ENSMUST00000136185.1	protein_coding	chr11:101555866-101559562
chr11	101565949	101566052	-	L2	LINE	L2	chr11	101566032	101566034	+	ENSMUST00000127871.1,ENSMUSG00000017119.19	Nbr1	ENSMUSG00000017119.19	ENSMUST00000127871.1	protein_coding	chr11:101566033-101568446
chr11	101568127	101568322	+	B2_Mm2	SINE	B2	chr11	101568293	101568295	+	ENSMUST00000174013.1,ENSMUSG00000017119.19	Nbr1	ENSMUSG00000017119.19	ENSMUST00000174013.1	protein_coding	chr11:101568294-101569403
chr11	101604849	101605036	+	U2	snRNA	snRNA	chr11	101604849	101604851	+	ENSMUST00000083886.1,ENSMUSG00000065820.1	Gm26316	ENSMUSG00000065820.1	ENSMUST00000083886.1	snRNA	chr11:101604850-101605040
chr11	101627365	101627552	+	U2	snRNA	snRNA	chr11	101627365	101627367	+	ENSMUST00000083833.1,ENSMUSG00000065767.1	Gm23849	ENSMUSG00000065767.1	ENSMUST00000083833.1	snRNA	chr11:101627366-101627556
chr11	101641747	101641934	+	U2	snRNA	snRNA	chr11	101641747	101641749	+	ENSMUST00000082768.1,ENSMUSG00000064702.1	Gm24950	ENSMUSG00000064702.1	ENSMUST00000082768.1	snRNA	chr11:101641748-101641938
chr11	101645743	101645930	-	U2	snRNA	snRNA	chr11	101645929	101645931	-	ENSMUST00000083317.1,ENSMUSG00000065251.1	Gm23971	ENSMUSG00000065251.1	ENSMUST00000083317.1	snRNA	chr11:101645740-101645930
chr11	101658237	101658424	+	U2	snRNA	snRNA	chr11	101658237	101658239	+	ENSMUST00000084010.1,ENSMUSG00000065944.1	Rnu2-10	ENSMUSG00000065944.1	ENSMUST00000084010.1	snRNA	chr11:101658238-101658428
chr11	101751709	101751901	-	B2_Mm2	SINE	B2	chr11	101751778	101751780	+	ENSMUST00000141461.1,ENSMUSG00000034931.15	Dhx8	ENSMUSG00000034931.15	ENSMUST00000141461.1	protein_coding	chr11:101751779-101753176
chr11	101784443	101784509	+	G-rich	Low_complexity	Low_complexity	chr11	101784490	101784492	-	ENSMUST00000129995.7,ENSMUSG00000017724.14	Etv4	ENSMUSG00000017724.14	ENSMUST00000129995.7	protein_coding	chr11:101773862-101784491
chr11	102035054	102035243	-	L1MEg	LINE	L1	chr11	102035083	102035085	-	ENSMUST00000156781.1,ENSMUSG00000087216.1	E130111B04Rik	ENSMUSG00000087216.1	ENSMUST00000156781.1	antisense	chr11:102030268-102035084
chr11	102085706	102085820	-	B1_Mur4	SINE	Alu	chr11	102085737	102085739	-	ENSMUST00000147126.7,ENSMUSG00000017314.12	Mpp2	ENSMUSG00000017314.12	ENSMUST00000147126.7	protein_coding	chr11:102064668-102085738
chr11	102185215	102185250	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	102185228	102185230	-	ENSMUST00000107156.8,ENSMUSG00000020922.11	Lsm12	ENSMUSG00000020922.11	ENSMUST00000107156.8	protein_coding	chr11:102162497-102185229
chr11	102189749	102189772	+	GC_rich	Low_complexity	Low_complexity	chr11	102189754	102189756	+	ENSMUST00000131382.7,ENSMUSG00000034793.15	G6pc3	ENSMUSG00000034793.15	ENSMUST00000131382.7	protein_coding	chr11:102189755-102192141
chr11	102191701	102191860	-	B1_Mus1	SINE	Alu	chr11	102191808	102191810	+	ENSMUST00000124594.7,ENSMUSG00000034793.15	G6pc3	ENSMUSG00000034793.15	ENSMUST00000124594.7	protein_coding	chr11:102191809-102193652
chr11	102198070	102198171	-	PB1D10	SINE	Alu	chr11	102198078	102198080	-	ENSMUST00000137787.7,ENSMUSG00000008855.17	Hdac5	ENSMUSG00000008855.17	ENSMUST00000137787.7	protein_coding	chr11:102196237-102198079
chr11	102296554	102296711	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	102296630	102296632	-	ENSMUST00000073234.8,ENSMUSG00000059995.12	Atxn7l3	ENSMUSG00000059995.12	ENSMUST00000073234.8	protein_coding	chr11:102289300-102296631
chr11	102296554	102296711	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	102296628	102296630	-	ENSMUST00000107132.2,ENSMUSG00000059995.12	Atxn7l3	ENSMUSG00000059995.12	ENSMUST00000107132.2	protein_coding	chr11:102289301-102296629
chr11	102366131	102366240	+	ID_B1	SINE	B4	chr11	102366202	102366204	-	ENSMUST00000151050.1,ENSMUSG00000006574.15	Slc4a1	ENSMUSG00000006574.15	ENSMUST00000151050.1	protein_coding	chr11:102361387-102366203
chr11	102376942	102377044	+	B3	SINE	B2	chr11	102377019	102377021	-	ENSMUST00000126237.1,ENSMUSG00000087330.1	Bloodlinc	ENSMUSG00000087330.1	ENSMUST00000126237.1	lincRNA	chr11:102375549-102377020
chr11	102406820	102406903	-	MIR3	SINE	MIR	chr11	102406883	102406885	-	ENSMUST00000147860.1,ENSMUSG00000018677.9	Slc25a39	ENSMUSG00000018677.9	ENSMUST00000147860.1	protein_coding	chr11:102405739-102406884
chr11	102456174	102456211	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	102456189	102456191	-	ENSMUST00000134735.1,ENSMUSG00000034664.13	Itga2b	ENSMUSG00000034664.13	ENSMUST00000134735.1	protein_coding	chr11:102453304-102456190
chr11	102458838	102458974	-	B1_Mus2	SINE	Alu	chr11	102458973	102458975	-	ENSMUST00000174900.2,ENSMUSG00000092641.2	Gm23563	ENSMUSG00000092641.2	ENSMUST00000174900.2	misc_RNA	chr11:102458724-102458974
chr11	102466919	102467012	-	B1F	SINE	Alu	chr11	102466954	102466956	-	ENSMUST00000145925.1,ENSMUSG00000034664.13	Itga2b	ENSMUSG00000034664.13	ENSMUST00000145925.1	protein_coding	chr11:102466287-102466955
chr11	102545653	102545702	+	(GGA)n	Simple_repeat	Simple_repeat	chr11	102545701	102545703	+	ENSMUST00000119782.1,ENSMUSG00000081677.1	Mdk-ps1	ENSMUSG00000081677.1	ENSMUST00000119782.1	processed_pseudogene	chr11:102545702-102546022
chr11	102549198	102549299	-	U6	snRNA	snRNA	chr11	102549298	102549300	-	ENSMUST00000083723.1,ENSMUSG00000065657.1	Gm25337	ENSMUSG00000065657.1	ENSMUST00000083723.1	snRNA	chr11:102549196-102549299
chr11	102616383	102616575	+	B3	SINE	B2	chr11	102616545	102616547	-	ENSMUST00000152172.1,ENSMUSG00000086105.1	Gm11636	ENSMUSG00000086105.1	ENSMUST00000152172.1	lincRNA	chr11:102614892-102616546
chr11	102663147	102663726	-	RMER15	LTR	ERVL	chr11	102663715	102663717	+	ENSMUST00000156590.7,ENSMUSG00000051455.13	Meioc	ENSMUSG00000051455.13	ENSMUST00000156590.7	protein_coding	chr11:102663716-102675308
chr11	102840644	102840788	+	B1_Mus2	SINE	Alu	chr11	102840674	102840676	-	ENSMUST00000143323.1,ENSMUSG00000020929.14	Eftud2	ENSMUSG00000020929.14	ENSMUST00000143323.1	protein_coding	chr11:102839450-102840675
chr11	102863259	102863390	-	L1M5	LINE	L1	chr11	102863336	102863338	+	ENSMUST00000181125.1,ENSMUSG00000097410.1	Gm26668	ENSMUSG00000097410.1	ENSMUST00000181125.1	lincRNA	chr11:102863337-103075903
chr11	102865867	102865984	-	B1_Mur3	SINE	Alu	chr11	102865968	102865970	-	ENSMUST00000173974.1,ENSMUSG00000020929.14	Eftud2	ENSMUSG00000020929.14	ENSMUST00000173974.1	protein_coding	chr11:102863865-102865969
chr11	103185202	103185360	-	ID_B1	SINE	B4	chr11	103185227	103185229	+	ENSMUST00000154871.1,ENSMUSG00000055805.15	Fmnl1	ENSMUSG00000055805.15	ENSMUST00000154871.1	protein_coding	chr11:103185228-103190658
chr11	103723944	103724143	-	B3	SINE	B2	chr11	103723949	103723951	+	ENSMUST00000150442.1,ENSMUSG00000086794.1	Gm11642	ENSMUSG00000086794.1	ENSMUST00000150442.1	processed_transcript	chr11:103723950-103724532
chr11	103954029	103954117	+	GC_rich	Low_complexity	Low_complexity	chr11	103954055	103954057	-	ENSMUST00000103075.10,ENSMUSG00000034187.18	Nsf	ENSMUSG00000034187.18	ENSMUST00000103075.10	protein_coding	chr11:103821782-103954056
chr11	104231483	104231575	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	104231483	104231485	+	ENSMUST00000145227.7,ENSMUSG00000018411.17	Mapt	ENSMUSG00000018411.17	ENSMUST00000145227.7	protein_coding	chr11:104231484-104306674
chr11	104231483	104231575	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	104231514	104231516	+	ENSMUST00000106993.9,ENSMUSG00000018411.17	Mapt	ENSMUSG00000018411.17	ENSMUST00000106993.9	protein_coding	chr11:104231515-104328435
chr11	104231483	104231575	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	104231572	104231574	+	ENSMUST00000132977.7,ENSMUSG00000018411.17	Mapt	ENSMUSG00000018411.17	ENSMUST00000132977.7	protein_coding	chr11:104231573-104306758
chr11	104259339	104259715	-	MTB	LTR	ERVL-MaLR	chr11	104259360	104259362	-	ENSMUST00000137561.1,ENSMUSG00000085134.1	Gm11659	ENSMUSG00000085134.1	ENSMUST00000137561.1	antisense	chr11:104250902-104259361
chr11	104341273	104341474	+	MIRb	SINE	MIR	chr11	104341298	104341300	-	ENSMUST00000069188.6,ENSMUSG00000018412.16	Kansl1	ENSMUSG00000018412.16	ENSMUST00000069188.6	protein_coding	chr11:104334921-104341299
chr11	104441633	104441717	+	GA-rich	Low_complexity	Low_complexity	chr11	104441701	104441703	-	ENSMUST00000106971.1,ENSMUSG00000018412.16	Kansl1	ENSMUSG00000018412.16	ENSMUST00000106971.1	protein_coding	chr11:104333545-104441702
chr11	104467862	104467996	+	B1_Mur1	SINE	Alu	chr11	104467990	104467992	-	ENSMUST00000134266.1,ENSMUSG00000018412.16	Kansl1	ENSMUSG00000018412.16	ENSMUST00000134266.1	protein_coding	chr11:104424937-104467991
chr11	104557596	104557785	+	MTD	LTR	ERVL-MaLR	chr11	104557776	104557778	-	ENSMUST00000148136.1,ENSMUSG00000086222.1	Gm11665	ENSMUSG00000086222.1	ENSMUST00000148136.1	antisense	chr11:104556789-104557777
chr11	104557777	104557980	-	B3	SINE	B2	chr11	104557776	104557778	-	ENSMUST00000148136.1,ENSMUSG00000086222.1	Gm11665	ENSMUSG00000086222.1	ENSMUST00000148136.1	antisense	chr11:104556789-104557777
chr11	105066502	105066860	-	BGLII	LTR	ERVK	chr11	105066837	105066839	+	ENSMUST00000137086.7,ENSMUSG00000020690.12	Efcab3	ENSMUSG00000020690.12	ENSMUST00000137086.7	protein_coding	chr11:105066838-105106439
chr11	105112560	105112688	+	G-rich	Low_complexity	Low_complexity	chr11	105112655	105112657	+	ENSMUST00000154543.1,ENSMUSG00000020690.12	Efcab3	ENSMUSG00000020690.12	ENSMUST00000154543.1	protein_coding	chr11:105112656-105117535
chr11	105137539	105137655	-	B1_Mur4	SINE	Alu	chr11	105137562	105137564	+	ENSMUST00000155460.1,ENSMUSG00000020691.13	Mettl2	ENSMUSG00000020691.13	ENSMUST00000155460.1	protein_coding	chr11:105137563-105140394
chr11	105141208	105141311	+	7SK	RNA	RNA	chr11	105141213	105141215	+	ENSMUST00000157634.1,ENSMUSG00000088259.1	Gm24290	ENSMUSG00000088259.1	ENSMUST00000157634.1	misc_RNA	chr11:105141214-105141309
chr11	105181771	105181816	+	GC_rich	Low_complexity	Low_complexity	chr11	105181792	105181794	+	ENSMUST00000092537.9,ENSMUSG00000020694.17	Tlk2	ENSMUSG00000020694.17	ENSMUST00000092537.9	protein_coding	chr11:105181793-105276459
chr11	105181894	105181928	+	GC_rich	Low_complexity	Low_complexity	chr11	105181916	105181918	+	ENSMUST00000015107.12,ENSMUSG00000020694.17	Tlk2	ENSMUSG00000020694.17	ENSMUST00000015107.12	protein_coding	chr11:105181917-105282176
chr11	105434122	105434614	+	MT2_Mm	LTR	ERVL	chr11	105434444	105434446	+	ENSMUST00000155987.1,ENSMUSG00000086089.1	Gm11640	ENSMUSG00000086089.1	ENSMUST00000155987.1	antisense	chr11:105434445-105435412
chr11	105597625	105597730	-	RMER12	LTR	ERVK	chr11	105597624	105597626	+	ENSMUST00000117031.1,ENSMUSG00000080681.1	Gm23990	ENSMUSG00000080681.1	ENSMUST00000117031.1	miRNA	chr11:105597625-105597741
chr11	106160124	106160209	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	106160141	106160143	-	ENSMUST00000045923.9,ENSMUSG00000040699.13	Limd2	ENSMUSG00000040699.13	ENSMUST00000045923.9	protein_coding	chr11:106156256-106160142
chr11	106204285	106204435	-	B1_Mus1	SINE	Alu	chr11	106204427	106204429	-	ENSMUST00000106865.7,ENSMUSG00000078622.8	Ccdc47	ENSMUSG00000078622.8	ENSMUST00000106865.7	protein_coding	chr11:106200779-106204428
chr11	106252538	106252568	+	(TTC)n	Simple_repeat	Simple_repeat	chr11	106252553	106252555	-	ENSMUST00000154635.1,ENSMUSG00000020706.13	Ftsj3	ENSMUSG00000020706.13	ENSMUST00000154635.1	protein_coding	chr11:106251009-106252554
chr11	106253923	106254007	-	L2a	LINE	L2	chr11	106253994	106253996	-	ENSMUST00000127803.1,ENSMUSG00000020706.13	Ftsj3	ENSMUSG00000020706.13	ENSMUST00000127803.1	protein_coding	chr11:106253376-106253995
chr11	106260205	106260313	+	U6	snRNA	snRNA	chr11	106260205	106260207	+	ENSMUST00000083228.1,ENSMUSG00000065162.1	Gm23645	ENSMUSG00000065162.1	ENSMUST00000083228.1	snRNA	chr11:106260206-106260313
chr11	106266022	106266167	+	B1_Mus2	SINE	Alu	chr11	106266070	106266072	-	ENSMUST00000132278.7,ENSMUSG00000078619.10	Smarcd2	ENSMUSG00000078619.10	ENSMUST00000132278.7	protein_coding	chr11:106264733-106266071
chr11	106353186	106353611	+	L2	LINE	L2	chr11	106353287	106353289	-	ENSMUST00000174877.1,ENSMUSG00000001027.7	Scn4a	ENSMUSG00000001027.7	ENSMUST00000174877.1	protein_coding	chr11:106349455-106353288
chr11	106663219	106663424	+	B3	SINE	B2	chr11	106663325	106663327	-	ENSMUST00000184424.1,ENSMUSG00000020717.19	Pecam1	ENSMUSG00000020717.19	ENSMUST00000184424.1	protein_coding	chr11:106661185-106663326
chr11	106691331	106691391	+	B1_Mur4	SINE	Alu	chr11	106691346	106691348	-	ENSMUST00000135481.1,ENSMUSG00000020717.19	Pecam1	ENSMUSG00000020717.19	ENSMUST00000135481.1	protein_coding	chr11:106688783-106691347
chr11	106750620	106750884	-	RMER17D	LTR	ERVK	chr11	106750627	106750629	-	ENSMUST00000068021.8,ENSMUSG00000020717.19	Pecam1	ENSMUSG00000020717.19	ENSMUST00000068021.8	protein_coding	chr11:106661797-106750628
chr11	106764654	106764741	-	U6	snRNA	snRNA	chr11	106764740	106764742	-	ENSMUST00000157775.1,ENSMUSG00000088400.1	Gm25889	ENSMUSG00000088400.1	ENSMUST00000157775.1	snRNA	chr11:106764635-106764741
chr11	106773813	106773911	-	PB1D9	SINE	Alu	chr11	106773849	106773851	-	ENSMUST00000142590.1,ENSMUSG00000020718.12	Polg2	ENSMUSG00000020718.12	ENSMUST00000142590.1	protein_coding	chr11:106772642-106773850
chr11	106812322	106812350	+	AT_rich	Low_complexity	Low_complexity	chr11	106812325	106812327	+	ENSMUST00000133581.1,ENSMUSG00000018372.13	Cep95	ENSMUSG00000018372.13	ENSMUST00000133581.1	protein_coding	chr11:106812326-106813839
chr11	106814146	106814289	+	B1_Mur2	SINE	Alu	chr11	106814222	106814224	+	ENSMUST00000131244.1,ENSMUSG00000018372.13	Cep95	ENSMUSG00000018372.13	ENSMUST00000131244.1	protein_coding	chr11:106814223-106815778
chr11	106828973	106829085	+	PB1D7	SINE	Alu	chr11	106829005	106829007	-	ENSMUST00000130688.1,ENSMUSG00000018363.16	Smurf2	ENSMUSG00000018363.16	ENSMUST00000130688.1	protein_coding	chr11:106824718-106829006
chr11	106920239	106920275	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	106920274	106920276	-	ENSMUST00000139297.7,ENSMUSG00000018363.16	Smurf2	ENSMUSG00000018363.16	ENSMUST00000139297.7	protein_coding	chr11:106822025-106920275
chr11	106920706	106920739	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	106920714	106920716	-	ENSMUST00000103067.9,ENSMUSG00000018363.16	Smurf2	ENSMUSG00000018363.16	ENSMUST00000103067.9	protein_coding	chr11:106820066-106920715
chr11	106920753	106920829	+	G-rich	Low_complexity	Low_complexity	chr11	106920760	106920762	-	ENSMUST00000184007.1,ENSMUSG00000099125.1	Gm27322	ENSMUSG00000099125.1	ENSMUST00000184007.1	miRNA	chr11:106920658-106920761
chr11	107526985	107527364	-	MTE2a	LTR	ERVL-MaLR	chr11	107527219	107527221	-	ENSMUST00000149428.1,ENSMUSG00000085864.1	C330019F10Rik	ENSMUSG00000085864.1	ENSMUST00000149428.1	lincRNA	chr11:107511403-107527220
chr11	107634378	107634514	-	B1_Mus1	SINE	Alu	chr11	107634500	107634502	+	ENSMUST00000143634.1,ENSMUSG00000020721.16	Helz	ENSMUSG00000020721.16	ENSMUST00000143634.1	protein_coding	chr11:107634501-107646094
chr11	107794528	107794618	+	GC_rich	Low_complexity	Low_complexity	chr11	107794556	107794558	-	ENSMUST00000021066.3,ENSMUSG00000020723.3	Cacng4	ENSMUSG00000020723.3	ENSMUST00000021066.3	protein_coding	chr11:107732357-107794557
chr11	107827373	107827509	+	7SK	RNA	RNA	chr11	107827373	107827375	+	ENSMUST00000157654.1,ENSMUSG00000088279.1	Gm23120	ENSMUSG00000088279.1	ENSMUST00000157654.1	misc_RNA	chr11:107827374-107827660
chr11	108381085	108381276	+	ORR1E	LTR	ERVL-MaLR	chr11	108381163	108381165	+	ENSMUST00000146050.1,ENSMUSG00000000049.11	Apoh	ENSMUSG00000000049.11	ENSMUST00000146050.1	protein_coding	chr11:108381164-108395850
chr11	108381085	108381276	+	ORR1E	LTR	ERVL-MaLR	chr11	108381168	108381170	+	ENSMUST00000152958.7,ENSMUSG00000000049.11	Apoh	ENSMUSG00000000049.11	ENSMUST00000152958.7	protein_coding	chr11:108381169-108407339
chr11	108709511	108710088	+	L2	LINE	L2	chr11	108710071	108710073	+	ENSMUST00000151755.1,ENSMUSG00000020728.17	Cep112	ENSMUSG00000020728.17	ENSMUST00000151755.1	protein_coding	chr11:108710072-108808706
chr11	108752196	108752343	+	C-rich	Low_complexity	Low_complexity	chr11	108752204	108752206	+	ENSMUST00000132978.2,ENSMUSG00000020728.17	Cep112	ENSMUSG00000020728.17	ENSMUST00000132978.2	protein_coding	chr11:108752205-108859362
chr11	108920325	108920349	+	GC_rich	Low_complexity	Low_complexity	chr11	108920348	108920350	+	ENSMUST00000052915.13,ENSMUSG00000000142.15	Axin2	ENSMUSG00000000142.15	ENSMUST00000052915.13	protein_coding	chr11:108920349-108950783
chr11	109066983	109067090	-	U6	snRNA	snRNA	chr11	109067089	109067091	-	ENSMUST00000082757.1,ENSMUSG00000064691.1	Gm24149	ENSMUSG00000064691.1	ENSMUST00000082757.1	snRNA	chr11:109066984-109067090
chr11	109346827	109347091	+	B4A	SINE	B4	chr11	109346838	109346840	+	ENSMUST00000190043.1,ENSMUSG00000099630.1	1700096J18Rik	ENSMUSG00000099630.1	ENSMUST00000190043.1	lincRNA	chr11:109346839-109353651
chr11	109466197	109466685	-	MT2_Mm	LTR	ERVL	chr11	109466358	109466360	-	ENSMUST00000032206.8,ENSMUSG00000041920.14	Slc16a6	ENSMUSG00000041920.14	ENSMUST00000032206.8	protein_coding	chr11:109458498-109466359
chr11	109466197	109466685	-	MT2_Mm	LTR	ERVL	chr11	109466430	109466432	-	ENSMUST00000116880.1,ENSMUSG00000080530.1	Gm25540	ENSMUSG00000080530.1	ENSMUST00000116880.1	miRNA	chr11:109466311-109466431
chr11	109473194	109473219	+	GC_rich	Low_complexity	Low_complexity	chr11	109473198	109473200	-	ENSMUST00000129901.1,ENSMUSG00000041920.14	Slc16a6	ENSMUSG00000041920.14	ENSMUST00000129901.1	protein_coding	chr11:109466697-109473199
chr11	109484777	109485145	+	MTD	LTR	ERVL-MaLR	chr11	109485022	109485024	+	ENSMUST00000136336.1,ENSMUSG00000020604.13	Arsg	ENSMUSG00000020604.13	ENSMUST00000136336.1	protein_coding	chr11:109485023-109489897
chr11	109499824	109500000	-	ID_B1	SINE	B4	chr11	109499823	109499825	-	ENSMUST00000157481.1,ENSMUSG00000088106.1	Gm22378	ENSMUSG00000088106.1	ENSMUST00000157481.1	snRNA	chr11:109499714-109499824
chr11	109813935	109814255	-	ORR1E	LTR	ERVL-MaLR	chr11	109814073	109814075	-	ENSMUST00000143578.1,ENSMUSG00000020617.13	1700012B07Rik	ENSMUSG00000020617.13	ENSMUST00000143578.1	protein_coding	chr11:109791598-109814074
chr11	110065309	110065506	+	L1MA6	LINE	L1	chr11	110065372	110065374	-	ENSMUST00000154849.1,ENSMUSG00000041828.15	Abca8a	ENSMUSG00000041828.15	ENSMUST00000154849.1	protein_coding	chr11:110062870-110065373
chr11	110251764	110251785	+	(TC)n	Simple_repeat	Simple_repeat	chr11	110251775	110251777	-	ENSMUST00000044003.13,ENSMUSG00000044749.13	Abca6	ENSMUSG00000044749.13	ENSMUST00000044003.13	protein_coding	chr11:110176820-110251776
chr11	110251764	110251785	+	(TC)n	Simple_repeat	Simple_repeat	chr11	110251775	110251777	-	ENSMUST00000150988.1,ENSMUSG00000044749.13	Abca6	ENSMUSG00000044749.13	ENSMUST00000150988.1	protein_coding	chr11:110236453-110251776
chr11	111725621	111725762	-	Lx10	LINE	L1	chr11	111725623	111725625	-	ENSMUST00000121349.1,ENSMUSG00000081666.1	Gm11677	ENSMUSG00000081666.1	ENSMUST00000121349.1	processed_pseudogene	chr11:111724648-111725624
chr11	112677142	112677319	-	URR1B	DNA	hAT-Charlie	chr11	112677219	112677221	-	ENSMUST00000133231.7,ENSMUSG00000041674.16	BC006965	ENSMUSG00000041674.16	ENSMUST00000133231.7	processed_transcript	chr11:112669201-112677220
chr11	112824831	112825166	-	MTE2b	LTR	ERVL-MaLR	chr11	112825153	112825155	+	ENSMUST00000149136.1,ENSMUSG00000020624.3	4933434M16Rik	ENSMUSG00000020624.3	ENSMUST00000149136.1	lincRNA	chr11:112825154-112826210
chr11	113173016	113173489	+	IAPLTR2_Mm	LTR	ERVK	chr11	113173076	113173078	-	ENSMUST00000136438.7,ENSMUSG00000087259.7	2610035D17Rik	ENSMUSG00000087259.7	ENSMUST00000136438.7	lincRNA	chr11:113043895-113173077
chr11	113173016	113173489	+	IAPLTR2_Mm	LTR	ERVK	chr11	113173076	113173078	-	ENSMUST00000150712.1,ENSMUSG00000087259.7	2610035D17Rik	ENSMUSG00000087259.7	ENSMUST00000150712.1	lincRNA	chr11:113044517-113173077
chr11	113467896	113467982	+	MER20	DNA	hAT-Charlie	chr11	113467976	113467978	+	ENSMUST00000105048.2,ENSMUSG00000078251.2	Gm16487	ENSMUSG00000078251.2	ENSMUST00000105048.2	pseudogene	chr11:113467977-113472014
chr11	113649171	113649332	+	RSINE1	SINE	B4	chr11	113649327	113649329	+	ENSMUST00000063776.13,ENSMUSG00000018661.17	Cog1	ENSMUSG00000018661.17	ENSMUST00000063776.13	protein_coding	chr11:113649328-113662399
chr11	114091364	114091685	-	MTD	LTR	ERVL-MaLR	chr11	114091405	114091407	+	ENSMUST00000129365.1,ENSMUSG00000086760.1	1700025D23Rik	ENSMUSG00000086760.1	ENSMUST00000129365.1	lincRNA	chr11:114091406-114095336
chr11	114238362	114238675	+	ORR1E	LTR	ERVL-MaLR	chr11	114238501	114238503	-	ENSMUST00000128183.1,ENSMUSG00000085844.1	Gm11690	ENSMUSG00000085844.1	ENSMUST00000128183.1	lincRNA	chr11:114219239-114238502
chr11	114423704	114424037	+	ORR1E	LTR	ERVL-MaLR	chr11	114423886	114423888	-	ENSMUST00000141088.1,ENSMUSG00000062391.3	4932435O22Rik	ENSMUSG00000062391.3	ENSMUST00000141088.1	lincRNA	chr11:114413643-114423887
chr11	114784469	114784660	+	B3	SINE	B2	chr11	114784658	114784660	+	ENSMUST00000131782.1,ENSMUSG00000010021.13	Kif19a	ENSMUSG00000010021.13	ENSMUST00000131782.1	protein_coding	chr11:114784659-114785567
chr11	115126836	115126943	+	PB1D10	SINE	Alu	chr11	115126849	115126851	-	ENSMUST00000124083.7,ENSMUSG00000047798.15	Cd300lf	ENSMUSG00000047798.15	ENSMUST00000124083.7	protein_coding	chr11:115120261-115126850
chr11	115268910	115269052	-	B1_Mus2	SINE	Alu	chr11	115269013	115269015	-	ENSMUST00000147500.1,ENSMUSG00000018861.8	Fdxr	ENSMUSG00000018861.8	ENSMUST00000147500.1	protein_coding	chr11:115268348-115269014
chr11	115418663	115418756	+	ID_B1	SINE	B4	chr11	115418740	115418742	-	ENSMUST00000137754.1,ENSMUSG00000034566.10	Atp5h	ENSMUSG00000034566.10	ENSMUST00000137754.1	protein_coding	chr11:115415818-115418741
chr11	115420129	115420164	+	GC_rich	Low_complexity	Low_complexity	chr11	115420149	115420151	+	ENSMUST00000106533.7,ENSMUSG00000016940.18	Kctd2	ENSMUSG00000016940.18	ENSMUST00000106533.7	protein_coding	chr11:115420150-115431274
chr11	115420298	115420383	+	GC_rich	Low_complexity	Low_complexity	chr11	115420311	115420313	+	ENSMUST00000143856.1,ENSMUSG00000016940.18	Kctd2	ENSMUSG00000016940.18	ENSMUST00000143856.1	protein_coding	chr11:115420312-115422429
chr11	115535779	115535927	+	GC_rich	Low_complexity	Low_complexity	chr11	115535816	115535818	-	ENSMUST00000121185.7,ENSMUSG00000020738.16	Sumo2	ENSMUSG00000020738.16	ENSMUST00000121185.7	protein_coding	chr11:115523102-115535817
chr11	115535779	115535927	+	GC_rich	Low_complexity	Low_complexity	chr11	115535816	115535818	-	ENSMUST00000117589.7,ENSMUSG00000020738.16	Sumo2	ENSMUSG00000020738.16	ENSMUST00000117589.7	protein_coding	chr11:115523102-115535817
chr11	115589188	115589582	+	MTA_Mm	LTR	ERVL-MaLR	chr11	115589520	115589522	-	ENSMUST00000154832.1,ENSMUSG00000020740.13	Gga3	ENSMUSG00000020740.13	ENSMUST00000154832.1	protein_coding	chr11:115584364-115589521
chr11	115601655	115601752	+	U6	snRNA	snRNA	chr11	115601655	115601657	+	ENSMUST00000158851.1,ENSMUSG00000089476.1	Gm25364	ENSMUSG00000089476.1	ENSMUST00000158851.1	snRNA	chr11:115601656-115601762
chr11	115617825	115617927	+	PB1D10	SINE	Alu	chr11	115617904	115617906	-	ENSMUST00000129194.1,ENSMUSG00000020744.13	Slc25a19	ENSMUSG00000020744.13	ENSMUST00000129194.1	protein_coding	chr11:115616549-115617905
chr11	115925022	115925170	-	B1_Mus1	SINE	Alu	chr11	115925026	115925028	+	ENSMUST00000134391.1,ENSMUSG00000087072.1	Recql5os1	ENSMUSG00000087072.1	ENSMUST00000134391.1	antisense	chr11:115925027-115926143
chr11	115992842	115992954	+	GA-rich	Low_complexity	Low_complexity	chr11	115992931	115992933	+	ENSMUST00000130286.1,ENSMUSG00000020758.15	Itgb4	ENSMUSG00000020758.15	ENSMUST00000130286.1	protein_coding	chr11:115992932-115994330
chr11	115993673	115993745	-	ID4	SINE	ID	chr11	115993714	115993716	-	ENSMUST00000180782.1,ENSMUSG00000097800.1	B230344G16Rik	ENSMUSG00000097800.1	ENSMUST00000180782.1	lincRNA	chr11:115988052-115993715
chr11	116027946	116028063	+	MIR3	SINE	MIR	chr11	116027961	116027963	-	ENSMUST00000106454.7,ENSMUSG00000016559.14	H3f3b	ENSMUSG00000016559.14	ENSMUST00000106454.7	protein_coding	chr11:116021912-116027962
chr11	116157347	116157653	+	ORR1C2	LTR	ERVL-MaLR	chr11	116157489	116157491	-	ENSMUST00000150703.7,ENSMUSG00000020776.18	Fbf1	ENSMUSG00000020776.18	ENSMUST00000150703.7	protein_coding	chr11:116154719-116157490
chr11	116182368	116182519	+	B1_Mur4	SINE	Alu	chr11	116182415	116182417	-	ENSMUST00000128793.1,ENSMUSG00000020777.16	Acox1	ENSMUSG00000020777.16	ENSMUST00000128793.1	protein_coding	chr11:116179720-116182416
chr11	116198821	116198874	+	C-rich	Low_complexity	Low_complexity	chr11	116198854	116198856	+	ENSMUST00000021130.6,ENSMUSG00000020778.12	Ten1	ENSMUSG00000020778.12	ENSMUST00000021130.6	protein_coding	chr11:116198855-116215318
chr11	116297743	116297786	+	C-rich	Low_complexity	Low_complexity	chr11	116297767	116297769	-	ENSMUST00000136417.1,ENSMUSG00000020792.15	Exoc7	ENSMUSG00000020792.15	ENSMUST00000136417.1	protein_coding	chr11:116292572-116297768
chr11	116412997	116413019	+	GC_rich	Low_complexity	Low_complexity	chr11	116413003	116413005	-	ENSMUST00000100202.9,ENSMUSG00000052949.14	Rnf157	ENSMUSG00000052949.14	ENSMUST00000100202.9	protein_coding	chr11:116336353-116413004
chr11	116412997	116413019	+	GC_rich	Low_complexity	Low_complexity	chr11	116413003	116413005	-	ENSMUST00000106398.8,ENSMUSG00000052949.14	Rnf157	ENSMUSG00000052949.14	ENSMUST00000106398.8	protein_coding	chr11:116336353-116413004
chr11	116434437	116434515	+	G-rich	Low_complexity	Low_complexity	chr11	116434508	116434510	+	ENSMUST00000144310.1,ENSMUSG00000050628.6	Ubald2	ENSMUSG00000050628.6	ENSMUST00000144310.1	protein_coding	chr11:116434509-116438223
chr11	116477607	116477824	+	ID_B1	SINE	B4	chr11	116477738	116477740	-	ENSMUST00000142480.1,ENSMUSG00000015869.16	Prpsap1	ENSMUSG00000015869.16	ENSMUST00000142480.1	protein_coding	chr11:116471400-116477739
chr11	116494081	116494284	+	MLT1A	LTR	ERVL-MaLR	chr11	116494201	116494203	-	ENSMUST00000152496.7,ENSMUSG00000015869.16	Prpsap1	ENSMUSG00000015869.16	ENSMUST00000152496.7	protein_coding	chr11:116478060-116494202
chr11	116534608	116534820	-	B3	SINE	B2	chr11	116534739	116534741	+	ENSMUST00000141798.2,ENSMUSG00000061878.15	Sphk1	ENSMUSG00000061878.15	ENSMUST00000141798.2	protein_coding	chr11:116534740-116536670
chr11	116581434	116581479	+	(CGG)n	Simple_repeat	Simple_repeat	chr11	116581446	116581448	-	ENSMUST00000082152.4,ENSMUSG00000020802.8	Ube2o	ENSMUSG00000020802.8	ENSMUST00000082152.4	protein_coding	chr11:116537740-116581447
chr11	116586203	116586511	+	MTC	LTR	ERVL-MaLR	chr11	116586431	116586433	+	ENSMUST00000142978.1,ENSMUSG00000020804.12	Aanat	ENSMUSG00000020804.12	ENSMUST00000142978.1	protein_coding	chr11:116586432-116597333
chr11	116684768	116684987	-	URR1B	DNA	hAT-Charlie	chr11	116684815	116684817	-	ENSMUST00000123236.1,ENSMUSG00000057286.6	St6galnac2	ENSMUSG00000057286.6	ENSMUST00000123236.1	protein_coding	chr11:116681683-116684816
chr11	116752057	116752190	-	B1_Mur4	SINE	Alu	chr11	116752166	116752168	+	ENSMUST00000156293.7,ENSMUSG00000056032.12	BC018473	ENSMUSG00000056032.12	ENSMUST00000156293.7	antisense	chr11:116752167-116759373
chr11	116752057	116752190	-	B1_Mur4	SINE	Alu	chr11	116752168	116752170	+	ENSMUST00000132056.7,ENSMUSG00000056032.12	BC018473	ENSMUSG00000056032.12	ENSMUST00000132056.7	antisense	chr11:116752169-116755842
chr11	116752297	116752425	+	RLTR19A2	LTR	ERVK	chr11	116752348	116752350	+	ENSMUST00000145570.7,ENSMUSG00000056032.12	BC018473	ENSMUSG00000056032.12	ENSMUST00000145570.7	antisense	chr11:116752349-116755842
chr11	116859115	116859144	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr11	116859140	116859142	+	ENSMUST00000147404.1,ENSMUSG00000020818.16	Mfsd11	ENSMUSG00000020818.16	ENSMUST00000147404.1	protein_coding	chr11:116859141-116861669
chr11	117058424	117058465	-	RSINE1	SINE	B4	chr11	117058424	117058426	+	ENSMUST00000139704.1,ENSMUSG00000085104.1	Gm11731	ENSMUSG00000085104.1	ENSMUST00000139704.1	lincRNA	chr11:117058425-117060268
chr11	117075963	117076114	-	RMER15	LTR	ERVL	chr11	117076007	117076009	+	ENSMUST00000232695.1,ENSMUSG00000086859.4	Snhg20	ENSMUSG00000086859.4	ENSMUST00000232695.1	lincRNA	chr11:117076008-117078955
chr11	117085798	117085939	-	B1_Mur3	SINE	Alu	chr11	117085835	117085837	+	ENSMUST00000175342.1,ENSMUSG00000093083.1	Gm24323	ENSMUSG00000093083.1	ENSMUST00000175342.1	miRNA	chr11:117085836-117085912
chr11	117132489	117132703	+	7SK	RNA	RNA	chr11	117132489	117132491	+	ENSMUST00000158718.1,ENSMUSG00000089343.1	Gm22667	ENSMUSG00000089343.1	ENSMUST00000158718.1	misc_RNA	chr11:117132490-117132817
chr11	117263437	117263479	+	(A)n	Simple_repeat	Simple_repeat	chr11	117263436	117263438	-	ENSMUST00000123882.1,ENSMUSG00000086050.1	Gm16045	ENSMUSG00000086050.1	ENSMUST00000123882.1	antisense	chr11:117257649-117263437
chr11	117414095	117414414	+	ORR1D1	LTR	ERVL-MaLR	chr11	117414388	117414390	+	ENSMUST00000124901.1,ENSMUSG00000086588.1	Gm11729	ENSMUSG00000086588.1	ENSMUST00000124901.1	lincRNA	chr11:117414389-117415368
chr11	117421629	117421730	+	MIRb	SINE	MIR	chr11	117421716	117421718	-	ENSMUST00000165677.1,ENSMUSG00000083705.2	Gm8624	ENSMUSG00000083705.2	ENSMUST00000165677.1	transcribed_processed_pseudogene	chr11:117420637-117421717
chr11	117782571	117782716	+	B1_Mus1	SINE	Alu	chr11	117782657	117782659	+	ENSMUST00000119455.1,ENSMUSG00000050106.17	Tmc8	ENSMUSG00000050106.17	ENSMUST00000119455.1	protein_coding	chr11:117782658-117793083
chr11	117816624	117816881	-	B4	SINE	B4	chr11	117816653	117816655	-	ENSMUST00000141939.1,ENSMUSG00000025574.13	Tk1	ENSMUSG00000025574.13	ENSMUST00000141939.1	protein_coding	chr11:117815624-117816654
chr11	117817408	117817595	+	URR1A	DNA	hAT-Charlie	chr11	117817423	117817425	-	ENSMUST00000153872.1,ENSMUSG00000025574.13	Tk1	ENSMUSG00000025574.13	ENSMUST00000153872.1	protein_coding	chr11:117815905-117817424
chr11	118180940	118181039	-	U6	snRNA	snRNA	chr11	118181034	118181036	-	ENSMUST00000157494.1,ENSMUSG00000088119.1	Gm24060	ENSMUSG00000088119.1	ENSMUST00000157494.1	snRNA	chr11:118180941-118181035
chr11	118265983	118266102	+	PB1D9	SINE	Alu	chr11	118266047	118266049	-	ENSMUST00000141647.7,ENSMUSG00000033909.17	Usp36	ENSMUSG00000033909.17	ENSMUST00000141647.7	protein_coding	chr11:118259654-118266048
chr11	118400842	118401070	+	MLTR14	LTR	ERV1	chr11	118401037	118401039	-	ENSMUST00000127054.1,ENSMUSG00000033880.11	Lgals3bp	ENSMUSG00000033880.11	ENSMUST00000127054.1	protein_coding	chr11:118399761-118401038
chr11	118454687	118455255	-	RLTR11C_MM	LTR	ERVK	chr11	118454994	118454996	-	ENSMUST00000142751.1,ENSMUSG00000086514.1	Gm11747	ENSMUSG00000086514.1	ENSMUST00000142751.1	antisense	chr11:118444200-118454995
chr11	118852724	118852791	+	(CATA)n	Simple_repeat	Simple_repeat	chr11	118852787	118852789	-	ENSMUST00000103877.1,ENSMUSG00000077065.1	Gm25040	ENSMUSG00000077065.1	ENSMUST00000103877.1	miRNA	chr11:118852723-118852788
chr11	118909543	118909609	+	(TC)n	Simple_repeat	Simple_repeat	chr11	118909549	118909551	-	ENSMUST00000117731.7,ENSMUSG00000025576.17	Rbfox3	ENSMUSG00000025576.17	ENSMUST00000117731.7	protein_coding	chr11:118489762-118909550
chr11	118909543	118909609	+	(TC)n	Simple_repeat	Simple_repeat	chr11	118909571	118909573	-	ENSMUST00000017576.10,ENSMUSG00000025576.17	Rbfox3	ENSMUSG00000025576.17	ENSMUST00000017576.10	protein_coding	chr11:118491155-118909572
chr11	118909543	118909609	+	(TC)n	Simple_repeat	Simple_repeat	chr11	118909549	118909551	-	ENSMUST00000106278.8,ENSMUSG00000025576.17	Rbfox3	ENSMUSG00000025576.17	ENSMUST00000106278.8	protein_coding	chr11:118491203-118909550
chr11	118909543	118909609	+	(TC)n	Simple_repeat	Simple_repeat	chr11	118909551	118909553	-	ENSMUST00000120061.7,ENSMUSG00000025576.17	Rbfox3	ENSMUSG00000025576.17	ENSMUST00000120061.7	protein_coding	chr11:118491994-118909552
chr11	119022941	119022971	+	GC_rich	Low_complexity	Low_complexity	chr11	119022961	119022963	+	ENSMUST00000026662.7,ENSMUSG00000025577.7	Cbx2	ENSMUSG00000025577.7	ENSMUST00000026662.7	protein_coding	chr11:119022962-119031270
chr11	119086208	119086233	+	(CTCG)n	Simple_repeat	Simple_repeat	chr11	119086220	119086222	-	ENSMUST00000026665.7,ENSMUSG00000039989.7	Cbx4	ENSMUSG00000039989.7	ENSMUST00000026665.7	protein_coding	chr11:119077573-119086221
chr11	119086208	119086233	+	(CTCG)n	Simple_repeat	Simple_repeat	chr11	119086220	119086222	-	ENSMUST00000145058.1,ENSMUSG00000039989.7	Cbx4	ENSMUSG00000039989.7	ENSMUST00000145058.1	protein_coding	chr11:119081373-119086221
chr11	119151527	119151710	-	B3	SINE	B2	chr11	119151650	119151652	+	ENSMUST00000181119.1,ENSMUSG00000097294.1	Gm26888	ENSMUSG00000097294.1	ENSMUST00000181119.1	lincRNA	chr11:119151651-119156994
chr11	119228437	119228471	+	(CCG)n	Simple_repeat	Simple_repeat	chr11	119228460	119228462	-	ENSMUST00000207655.1,ENSMUSG00000039976.4	Tbc1d16	ENSMUSG00000039976.4	ENSMUST00000207655.1	protein_coding	chr11:119147135-119228461
chr11	119228510	119228578	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr11	119228571	119228573	+	ENSMUST00000035935.8,ENSMUSG00000039963.18	Ccdc40	ENSMUSG00000039963.18	ENSMUST00000035935.8	protein_coding	chr11:119228572-119265212
chr11	119262604	119262954	+	ORR1D2	LTR	ERVL-MaLR	chr11	119262871	119262873	+	ENSMUST00000125724.1,ENSMUSG00000039963.18	Ccdc40	ENSMUSG00000039963.18	ENSMUST00000125724.1	protein_coding	chr11:119262872-119264306
chr11	119480072	119480484	-	MTC	LTR	ERVL-MaLR	chr11	119480431	119480433	-	ENSMUST00000208152.1,ENSMUSG00000109408.1	A930037H05Rik	ENSMUSG00000109408.1	ENSMUST00000208152.1	processed_transcript	chr11:119476052-119480432
chr11	119501883	119502081	+	B4	SINE	B4	chr11	119501977	119501979	+	ENSMUST00000132015.1,ENSMUSG00000039850.16	Endov	ENSMUSG00000039850.16	ENSMUST00000132015.1	protein_coding	chr11:119501978-119507389
chr11	119646627	119646755	+	B1_Mus2	SINE	Alu	chr11	119646629	119646631	-	ENSMUST00000121392.1,ENSMUSG00000083870.1	Gm11761	ENSMUSG00000083870.1	ENSMUST00000121392.1	processed_pseudogene	chr11:119646186-119646630
chr11	119942669	119942786	+	C-rich	Low_complexity	Low_complexity	chr11	119942697	119942699	-	ENSMUST00000129379.1,ENSMUSG00000085207.1	Gm11767	ENSMUSG00000085207.1	ENSMUST00000129379.1	antisense	chr11:119935803-119942698
chr11	119942669	119942786	+	C-rich	Low_complexity	Low_complexity	chr11	119942762	119942764	+	ENSMUST00000106231.7,ENSMUSG00000025372.16	Baiap2	ENSMUSG00000025372.16	ENSMUST00000106231.7	protein_coding	chr11:119942763-120002621
chr11	119942669	119942786	+	C-rich	Low_complexity	Low_complexity	chr11	119942762	119942764	+	ENSMUST00000075180.11,ENSMUSG00000025372.16	Baiap2	ENSMUSG00000025372.16	ENSMUST00000075180.11	protein_coding	chr11:119942763-120002621
chr11	119942669	119942786	+	C-rich	Low_complexity	Low_complexity	chr11	119942762	119942764	+	ENSMUST00000103021.9,ENSMUSG00000025372.16	Baiap2	ENSMUSG00000025372.16	ENSMUST00000103021.9	protein_coding	chr11:119942763-120002621
chr11	119942669	119942786	+	C-rich	Low_complexity	Low_complexity	chr11	119942762	119942764	+	ENSMUST00000026436.9,ENSMUSG00000025372.16	Baiap2	ENSMUSG00000025372.16	ENSMUST00000026436.9	protein_coding	chr11:119942763-120006782
chr11	119942669	119942786	+	C-rich	Low_complexity	Low_complexity	chr11	119942762	119942764	+	ENSMUST00000106233.1,ENSMUSG00000025372.16	Baiap2	ENSMUSG00000025372.16	ENSMUST00000106233.1	protein_coding	chr11:119942763-120006782
chr11	120047122	120047149	+	GC_rich	Low_complexity	Low_complexity	chr11	120047144	120047146	-	ENSMUST00000103020.7,ENSMUSG00000025375.15	Aatk	ENSMUSG00000025375.15	ENSMUST00000103020.7	protein_coding	chr11:120007320-120047145
chr11	120097233	120097381	+	B1_Mus1	SINE	Alu	chr11	120097259	120097261	-	ENSMUST00000152152.1,ENSMUSG00000025377.14	Tepsin	ENSMUSG00000025377.14	ENSMUST00000152152.1	protein_coding	chr11:120095530-120097260
chr11	120236438	120236487	+	(TG)n	Simple_repeat	Simple_repeat	chr11	120236444	120236446	+	ENSMUST00000142439.1,ENSMUSG00000039741.15	Bahcc1	ENSMUSG00000039741.15	ENSMUST00000142439.1	protein_coding	chr11:120236445-120237284
chr11	120348529	120348566	+	GC_rich	Low_complexity	Low_complexity	chr11	120348541	120348543	-	ENSMUST00000071555.12,ENSMUSG00000062825.15	Actg1	ENSMUSG00000062825.15	ENSMUST00000071555.12	protein_coding	chr11:120345690-120348542
chr11	120348649	120348715	+	C-rich	Low_complexity	Low_complexity	chr11	120348677	120348679	+	ENSMUST00000143813.1,ENSMUSG00000043644.4	0610009L18Rik	ENSMUSG00000043644.4	ENSMUST00000143813.1	bidirectional_promoter_lncRNA	chr11:120348678-120351190
chr11	120383471	120383566	-	B1_Mus2	SINE	Alu	chr11	120383502	120383504	-	ENSMUST00000137041.1,ENSMUSG00000039703.15	Nploc4	ENSMUSG00000039703.15	ENSMUST00000137041.1	protein_coding	chr11:120382318-120383503
chr11	120416902	120417039	-	RSINE1	SINE	B4	chr11	120416930	120416932	-	ENSMUST00000136095.1,ENSMUSG00000039703.15	Nploc4	ENSMUSG00000039703.15	ENSMUST00000136095.1	protein_coding	chr11:120413640-120416931
chr11	120581249	120581445	+	GC_rich	Low_complexity	Low_complexity	chr11	120581379	120581381	-	ENSMUST00000067936.5,ENSMUSG00000025132.13	Arhgdia	ENSMUSG00000025132.13	ENSMUST00000067936.5	protein_coding	chr11:120578109-120581380
chr11	120598216	120598275	+	GC_rich	Low_complexity	Low_complexity	chr11	120598230	120598232	-	ENSMUST00000156685.1,ENSMUSG00000025134.2	Alyref	ENSMUSG00000025134.2	ENSMUST00000156685.1	protein_coding	chr11:120595616-120598231
chr11	120603822	120603947	-	ID_B1	SINE	B4	chr11	120603943	120603945	+	ENSMUST00000129263.1,ENSMUSG00000025135.12	Anapc11	ENSMUSG00000025135.12	ENSMUST00000129263.1	protein_coding	chr11:120603944-120605492
chr11	120614500	120614647	-	B1_Mus1	SINE	Alu	chr11	120614524	120614526	-	ENSMUST00000145356.1,ENSMUSG00000025137.15	Pcyt2	ENSMUSG00000025137.15	ENSMUST00000145356.1	protein_coding	chr11:120612977-120614525
chr11	120673070	120673095	+	GC_rich	Low_complexity	Low_complexity	chr11	120673082	120673084	+	ENSMUST00000168714.8,ENSMUSG00000025142.18	Aspscr1	ENSMUSG00000025142.18	ENSMUST00000168714.8	protein_coding	chr11:120673083-120708999
chr11	120676958	120677258	-	ID_B1	SINE	B4	chr11	120677225	120677227	+	ENSMUST00000129644.8,ENSMUSG00000025142.18	Aspscr1	ENSMUSG00000025142.18	ENSMUST00000129644.8	protein_coding	chr11:120677226-120678445
chr11	120721571	120721606	+	GC_rich	Low_complexity	Low_complexity	chr11	120721572	120721574	+	ENSMUST00000142229.1,ENSMUSG00000018012.11	Rac3	ENSMUSG00000018012.11	ENSMUST00000142229.1	protein_coding	chr11:120721573-120723606
chr11	120784167	120784214	+	GC_rich	Low_complexity	Low_complexity	chr11	120784184	120784186	-	ENSMUST00000123273.1,ENSMUSG00000025158.7	Rfng	ENSMUSG00000025158.7	ENSMUST00000123273.1	protein_coding	chr11:120780746-120784185
chr11	120784167	120784214	+	GC_rich	Low_complexity	Low_complexity	chr11	120784206	120784208	-	ENSMUST00000026156.7,ENSMUSG00000025158.7	Rfng	ENSMUSG00000025158.7	ENSMUST00000026156.7	protein_coding	chr11:120780748-120784207
chr11	120784476	120784526	+	GC_rich	Low_complexity	Low_complexity	chr11	120784514	120784516	+	ENSMUST00000172809.1,ENSMUSG00000025156.17	Gps1	ENSMUSG00000025156.17	ENSMUST00000172809.1	protein_coding	chr11:120784515-120789102
chr11	120786650	120786888	-	RLTR41C	LTR	ERV1	chr11	120786771	120786773	+	ENSMUST00000144519.1,ENSMUSG00000025156.17	Gps1	ENSMUSG00000025156.17	ENSMUST00000144519.1	protein_coding	chr11:120786772-120787761
chr11	120948443	120948517	-	MIRc	SINE	MIR	chr11	120948479	120948481	+	ENSMUST00000070653.12,ENSMUSG00000025161.16	Slc16a3	ENSMUSG00000025161.16	ENSMUST00000070653.12	protein_coding	chr11:120948480-120958775
chr11	121028754	121029467	-	RMER13A1	LTR	ERVK	chr11	121029401	121029403	+	ENSMUST00000136500.2,ENSMUSG00000086835.2	Gm11775	ENSMUSG00000086835.2	ENSMUST00000136500.2	antisense	chr11:121029402-121052357
chr11	121030858	121030985	+	U3	snRNA	snRNA	chr11	121030857	121030859	+	ENSMUST00000116966.1,ENSMUSG00000080616.1	Gm22152	ENSMUSG00000080616.1	ENSMUST00000116966.1	snoRNA	chr11:121030858-121030982
chr11	121205956	121207049	+	MTA_Mm-int	LTR	ERVL-MaLR	chr11	121206637	121206639	+	ENSMUST00000124768.7,ENSMUSG00000039307.16	Hexdc	ENSMUSG00000039307.16	ENSMUST00000124768.7	protein_coding	chr11:121206638-121214935
chr11	121549920	121550180	-	B4	SINE	B4	chr11	121550110	121550112	+	ENSMUST00000147470.1,ENSMUSG00000039230.14	Tbcd	ENSMUSG00000039230.14	ENSMUST00000147470.1	protein_coding	chr11:121550111-121590383
chr11	121701544	121701688	+	MER20	DNA	hAT-Charlie	chr11	121701543	121701545	+	ENSMUST00000106089.7,ENSMUSG00000039208.15	Metrnl	ENSMUSG00000039208.15	ENSMUST00000106089.7	protein_coding	chr11:121701544-121716286
chr11	121856531	121858464	+	MurSatRep1	Unknown	Unknown	chr11	121856772	121856774	+	ENSMUST00000117328.1,ENSMUSG00000084401.1	Gm12586	ENSMUSG00000084401.1	ENSMUST00000117328.1	unprocessed_pseudogene	chr11:121856773-121861227
chr11	121883824	121883995	-	RLTR10-int	LTR	ERVK	chr11	121883862	121883864	-	ENSMUST00000134226.1,ENSMUSG00000086684.1	Gm12590	ENSMUSG00000086684.1	ENSMUST00000134226.1	lincRNA	chr11:121882333-121883863
chr11	121969226	121970995	-	MurSatRep1	Unknown	Unknown	chr11	121970684	121970686	-	ENSMUST00000122407.1,ENSMUSG00000082831.1	Gm12591	ENSMUSG00000082831.1	ENSMUST00000122407.1	unprocessed_pseudogene	chr11:121968211-121970685
chr12	3357146	3357568	+	(TG)n	Simple_repeat	Simple_repeat	chr12	3357152	3357154	-	ENSMUST00000180719.1,ENSMUSG00000097429.1	Gm26520	ENSMUSG00000097429.1	ENSMUST00000180719.1	lincRNA	chr12:3343816-3357153
chr12	3400036	3400183	-	B4A	SINE	B4	chr12	3400084	3400086	+	ENSMUST00000218952.1,ENSMUSG00000020668.10	Kif3c	ENSMUSG00000020668.10	ENSMUST00000218952.1	protein_coding	chr12:3400085-3403139
chr12	3401867	3402332	+	RLTR11D	LTR	ERVK	chr12	3402063	3402065	+	ENSMUST00000217891.1,ENSMUSG00000020668.10	Kif3c	ENSMUSG00000020668.10	ENSMUST00000217891.1	protein_coding	chr12:3402064-3402890
chr12	3572324	3572431	+	C-rich	Low_complexity	Low_complexity	chr12	3572380	3572382	+	ENSMUST00000173199.7,ENSMUSG00000071454.13	Dtnb	ENSMUSG00000071454.13	ENSMUST00000173199.7	protein_coding	chr12:3572381-3781796
chr12	3572324	3572431	+	C-rich	Low_complexity	Low_complexity	chr12	3572390	3572392	+	ENSMUST00000164578.8,ENSMUSG00000071454.13	Dtnb	ENSMUSG00000071454.13	ENSMUST00000164578.8	protein_coding	chr12:3572391-3781398
chr12	3572324	3572431	+	C-rich	Low_complexity	Low_complexity	chr12	3572416	3572418	+	ENSMUST00000173483.7,ENSMUSG00000071454.13	Dtnb	ENSMUSG00000071454.13	ENSMUST00000173483.7	protein_coding	chr12:3572417-3781359
chr12	3699177	3699262	+	RLTR17B_Mm	LTR	ERVK	chr12	3699177	3699179	+	ENSMUST00000104640.1,ENSMUSG00000077830.1	Gm26050	ENSMUSG00000077830.1	ENSMUST00000104640.1	miRNA	chr12:3699178-3699240
chr12	3806466	3806514	+	GC_rich	Low_complexity	Low_complexity	chr12	3806497	3806499	+	ENSMUST00000085826.12,ENSMUSG00000020661.15	Dnmt3a	ENSMUSG00000020661.15	ENSMUST00000085826.12	protein_coding	chr12:3806498-3867484
chr12	3806861	3807099	+	G-rich	Low_complexity	Low_complexity	chr12	3807029	3807031	+	ENSMUST00000020991.14,ENSMUSG00000020661.15	Dnmt3a	ENSMUSG00000020661.15	ENSMUST00000020991.14	protein_coding	chr12:3807030-3914443
chr12	3806861	3807099	+	G-rich	Low_complexity	Low_complexity	chr12	3807057	3807059	+	ENSMUST00000172509.7,ENSMUSG00000020661.15	Dnmt3a	ENSMUSG00000020661.15	ENSMUST00000172509.7	protein_coding	chr12:3807058-3896995
chr12	3860929	3861157	+	ID_B1	SINE	B4	chr12	3861020	3861022	+	ENSMUST00000172816.1,ENSMUSG00000020661.15	Dnmt3a	ENSMUSG00000020661.15	ENSMUST00000172816.1	protein_coding	chr12:3861021-3866162
chr12	3891701	3891778	+	C-rich	Low_complexity	Low_complexity	chr12	3891727	3891729	+	ENSMUST00000172689.7,ENSMUSG00000020661.15	Dnmt3a	ENSMUSG00000020661.15	ENSMUST00000172689.7	protein_coding	chr12:3891728-3907842
chr12	3891701	3891778	+	C-rich	Low_complexity	Low_complexity	chr12	3891743	3891745	+	ENSMUST00000111186.7,ENSMUSG00000020661.15	Dnmt3a	ENSMUSG00000020661.15	ENSMUST00000111186.7	protein_coding	chr12:3891744-3914443
chr12	4159513	4159729	-	ORR1C1	LTR	ERVL-MaLR	chr12	4159599	4159601	+	ENSMUST00000134680.1,ENSMUSG00000020654.15	Adcy3	ENSMUSG00000020654.15	ENSMUST00000134680.1	protein_coding	chr12:4159600-4182945
chr12	4222093	4222229	+	B1_Mur2	SINE	Alu	chr12	4222101	4222103	+	ENSMUST00000220315.1,ENSMUSG00000112770.1	Gm48210	ENSMUSG00000112770.1	ENSMUST00000220315.1	TEC	chr12:4222102-4223361
chr12	4231958	4232226	-	MTD	LTR	ERVL-MaLR	chr12	4232002	4232004	-	ENSMUST00000128466.1,ENSMUSG00000020652.17	Cenpo	ENSMUSG00000020652.17	ENSMUST00000128466.1	protein_coding	chr12:4215358-4232003
chr12	4240325	4241157	-	RMER17D2	LTR	ERVK	chr12	4241132	4241134	+	ENSMUST00000220337.1,ENSMUSG00000111916.1	4921501I09Rik	ENSMUSG00000111916.1	ENSMUST00000220337.1	antisense	chr12:4241133-4247671
chr12	4394481	4394705	+	7SK	RNA	RNA	chr12	4394481	4394483	+	ENSMUST00000122648.1,ENSMUSG00000084597.1	Gm22343	ENSMUSG00000084597.1	ENSMUST00000122648.1	misc_RNA	chr12:4394482-4394767
chr12	4477155	4477209	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	4477181	4477183	-	ENSMUST00000085814.4,ENSMUSG00000020647.10	Ncoa1	ENSMUSG00000020647.10	ENSMUST00000085814.4	protein_coding	chr12:4247362-4477182
chr12	4509211	4509364	+	C-rich	Low_complexity	Low_complexity	chr12	4509316	4509318	+	ENSMUST00000218374.1,ENSMUSG00000111938.1	2900045O20Rik	ENSMUSG00000111938.1	ENSMUST00000218374.1	lincRNA	chr12:4509317-4522370
chr12	4553599	4553933	-	ORR1A1	LTR	ERVL-MaLR	chr12	4553784	4553786	-	ENSMUST00000217932.1,ENSMUSG00000112819.1	Gm46332	ENSMUSG00000112819.1	ENSMUST00000217932.1	lincRNA	chr12:4552546-4553785
chr12	4569366	4569582	+	Lx5c	LINE	L1	chr12	4569537	4569539	-	ENSMUST00000220320.1,ENSMUSG00000112819.1	Gm46332	ENSMUSG00000112819.1	ENSMUST00000220320.1	lincRNA	chr12:4552547-4569538
chr12	4634645	4634798	+	GA-rich	Low_complexity	Low_complexity	chr12	4634775	4634777	+	ENSMUST00000217672.1,ENSMUSG00000020640.10	Itsn2	ENSMUSG00000020640.10	ENSMUST00000217672.1	protein_coding	chr12:4634776-4679506
chr12	4655713	4656094	-	MTB	LTR	ERVL-MaLR	chr12	4655887	4655889	-	ENSMUST00000217882.1,ENSMUSG00000111971.1	Gm48678	ENSMUSG00000111971.1	ENSMUST00000217882.1	antisense	chr12:4595340-4655888
chr12	4655713	4656094	-	MTB	LTR	ERVL-MaLR	chr12	4655887	4655889	-	ENSMUST00000218352.1,ENSMUSG00000111971.1	Gm48678	ENSMUSG00000111971.1	ENSMUST00000218352.1	antisense	chr12:4639013-4655888
chr12	4744358	4745255	-	RMER19B	LTR	ERVK	chr12	4744556	4744558	-	ENSMUST00000217684.1,ENSMUSG00000050545.10	Fam228b	ENSMUSG00000050545.10	ENSMUST00000217684.1	protein_coding	chr12:4739892-4744557
chr12	4749750	4749849	+	U6	snRNA	snRNA	chr12	4749751	4749753	+	ENSMUST00000157314.1,ENSMUSG00000087939.1	Gm23676	ENSMUSG00000087939.1	ENSMUST00000157314.1	snRNA	chr12:4749752-4749856
chr12	4758546	4758653	+	U6	snRNA	snRNA	chr12	4758546	4758548	+	ENSMUST00000101885.1,ENSMUSG00000075833.1	Gm22003	ENSMUSG00000075833.1	ENSMUST00000101885.1	snRNA	chr12:4758547-4758653
chr12	4981940	4982285	+	ORR1A1	LTR	ERVL-MaLR	chr12	4982051	4982053	+	ENSMUST00000220408.1,ENSMUSG00000052812.5	Atad2b	ENSMUSG00000052812.5	ENSMUST00000220408.1	protein_coding	chr12:4982052-4993758
chr12	4999269	4999368	-	U6	snRNA	snRNA	chr12	4999367	4999369	-	ENSMUST00000157155.1,ENSMUSG00000087780.1	Gm23167	ENSMUSG00000087780.1	ENSMUST00000157155.1	snRNA	chr12:4999266-4999368
chr12	5235935	5236042	+	PB1	SINE	Alu	chr12	5235963	5235965	-	ENSMUST00000219031.1,ENSMUSG00000112020.1	Gm48532	ENSMUSG00000112020.1	ENSMUST00000219031.1	TEC	chr12:5235156-5235964
chr12	5843711	5843800	+	5S	rRNA	rRNA	chr12	5843711	5843713	+	ENSMUST00000157584.1,ENSMUSG00000088209.1	Gm23752	ENSMUSG00000088209.1	ENSMUST00000157584.1	rRNA	chr12:5843712-5843826
chr12	5874668	5875021	+	MTD	LTR	ERVL-MaLR	chr12	5874913	5874915	+	ENSMUST00000219102.1,ENSMUSG00000112404.1	AC159282.1	ENSMUSG00000112404.1	ENSMUST00000219102.1	lincRNA	chr12:5874914-5984958
chr12	5874668	5875021	+	MTD	LTR	ERVL-MaLR	chr12	5874914	5874916	+	ENSMUST00000219268.1,ENSMUSG00000112404.1	AC159282.1	ENSMUSG00000112404.1	ENSMUST00000219268.1	lincRNA	chr12:5874915-5984683
chr12	6005612	6005667	+	RLTR15	LTR	ERVK	chr12	6005666	6005668	+	ENSMUST00000220422.1,ENSMUSG00000111898.1	Gm48608	ENSMUSG00000111898.1	ENSMUST00000220422.1	processed_pseudogene	chr12:6005667-6006240
chr12	6699547	6699841	+	IAP1-MM_LTR	LTR	ERVK	chr12	6699752	6699754	+	ENSMUST00000220141.1,ENSMUSG00000112454.1	Gm48619	ENSMUSG00000112454.1	ENSMUST00000220141.1	lincRNA	chr12:6699753-6803300
chr12	7896866	7897676	+	RMER17B	LTR	ERVK	chr12	7897572	7897574	+	ENSMUST00000220333.1,ENSMUSG00000112465.1	Gm18387	ENSMUSG00000112465.1	ENSMUST00000220333.1	processed_pseudogene	chr12:7897573-7898274
chr12	8510806	8511285	+	MLT1H2	LTR	ERVL-MaLR	chr12	8511200	8511202	+	ENSMUST00000219595.1,ENSMUSG00000112276.1	5033421B08Rik	ENSMUSG00000112276.1	ENSMUST00000219595.1	antisense	chr12:8511201-8562681
chr12	8598883	8599508	-	RLTR5_Mm	LTR	ERV1	chr12	8599065	8599067	-	ENSMUST00000036938.8,ENSMUSG00000020600.13	Slc7a15	ENSMUSG00000020600.13	ENSMUST00000036938.8	protein_coding	chr12:8528483-8599066
chr12	8674093	8674134	+	GC_rich	Low_complexity	Low_complexity	chr12	8674133	8674135	+	ENSMUST00000111123.8,ENSMUSG00000020594.14	Pum2	ENSMUSG00000020594.14	ENSMUST00000111123.8	protein_coding	chr12:8674134-8751454
chr12	8674093	8674134	+	GC_rich	Low_complexity	Low_complexity	chr12	8674133	8674135	+	ENSMUST00000178015.7,ENSMUSG00000020594.14	Pum2	ENSMUSG00000020594.14	ENSMUST00000178015.7	protein_coding	chr12:8674134-8752581
chr12	9509445	9509943	-	MT2_Mm	LTR	ERVL	chr12	9509636	9509638	-	ENSMUST00000221043.1,ENSMUSG00000112496.2	Gm48764	ENSMUSG00000112496.2	ENSMUST00000221043.1	lincRNA	chr12:9503584-9509637
chr12	9643816	9644860	-	L1_Mur2	LINE	L1	chr12	9643816	9643818	-	ENSMUST00000104071.1,ENSMUSG00000077259.1	Gm23979	ENSMUSG00000077259.1	ENSMUST00000104071.1	snoRNA	chr12:9643690-9643817
chr12	9690688	9691758	+	L1Md_T	LINE	L1	chr12	9690690	9690692	+	ENSMUST00000218559.1,ENSMUSG00000112043.1	Gm48774	ENSMUSG00000112043.1	ENSMUST00000218559.1	processed_pseudogene	chr12:9690691-9691670
chr12	9729272	9729573	-	IAPLTR4	LTR	ERVK	chr12	9729518	9729520	+	ENSMUST00000220360.1,ENSMUSG00000112787.1	Gm48790	ENSMUSG00000112787.1	ENSMUST00000220360.1	lincRNA	chr12:9729519-9734209
chr12	9729272	9729573	-	IAPLTR4	LTR	ERVK	chr12	9729518	9729520	+	ENSMUST00000217846.1,ENSMUSG00000112787.1	Gm48790	ENSMUSG00000112787.1	ENSMUST00000217846.1	lincRNA	chr12:9729519-9734209
chr12	9865350	9865450	-	U6	snRNA	snRNA	chr12	9865449	9865451	-	ENSMUST00000157712.1,ENSMUSG00000088337.1	Gm22845	ENSMUSG00000088337.1	ENSMUST00000157712.1	snRNA	chr12:9865347-9865450
chr12	10321252	10326316	+	L1Md_F2	LINE	L1	chr12	10322865	10322867	+	ENSMUST00000218052.1,ENSMUSG00000111917.1	Gm48793	ENSMUSG00000111917.1	ENSMUST00000218052.1	processed_pseudogene	chr12:10322866-10326643
chr12	10446234	10446500	+	B4A	SINE	B4	chr12	10446387	10446389	+	ENSMUST00000219221.1,ENSMUSG00000112792.1	Gm38407	ENSMUSG00000112792.1	ENSMUST00000219221.1	lincRNA	chr12:10446388-10531303
chr12	10526436	10526936	+	MT2_Mm	LTR	ERVL	chr12	10526774	10526776	+	ENSMUST00000218017.1,ENSMUSG00000112792.1	Gm38407	ENSMUSG00000112792.1	ENSMUST00000218017.1	lincRNA	chr12:10526775-10531098
chr12	10988632	10993880	+	L1Md_T	LINE	L1	chr12	10990353	10990355	+	ENSMUST00000220310.1,ENSMUSG00000111928.1	Gm48082	ENSMUSG00000111928.1	ENSMUST00000220310.1	processed_pseudogene	chr12:10990354-10994195
chr12	11204267	11204411	+	MIRb	SINE	MIR	chr12	11204380	11204382	-	ENSMUST00000219371.1,ENSMUSG00000112041.1	9530020I12Rik	ENSMUSG00000112041.1	ENSMUST00000219371.1	lincRNA	chr12:11186348-11204381
chr12	11204267	11204411	+	MIRb	SINE	MIR	chr12	11204408	11204410	-	ENSMUST00000218368.1,ENSMUSG00000112041.1	9530020I12Rik	ENSMUSG00000112041.1	ENSMUST00000218368.1	lincRNA	chr12:11202489-11204409
chr12	11266469	11266511	+	GC_rich	Low_complexity	Low_complexity	chr12	11266507	11266509	+	ENSMUST00000218958.1,ENSMUSG00000020608.7	Smc6	ENSMUSG00000020608.7	ENSMUST00000218958.1	protein_coding	chr12:11266508-11270731
chr12	11512197	11512691	-	MT2_Mm	LTR	ERVL	chr12	11512389	11512391	-	ENSMUST00000219088.2,ENSMUSG00000113226.1	Gm47808	ENSMUSG00000113226.1	ENSMUST00000219088.2	processed_transcript	chr12:11507226-11512390
chr12	11512197	11512691	-	MT2_Mm	LTR	ERVL	chr12	11512389	11512391	-	ENSMUST00000221353.1,ENSMUSG00000113226.1	Gm47808	ENSMUSG00000113226.1	ENSMUST00000221353.1	processed_transcript	chr12:11509029-11512390
chr12	11688756	11689004	-	7SK	RNA	RNA	chr12	11689003	11689005	-	ENSMUST00000157940.1,ENSMUSG00000088565.1	Gm23781	ENSMUSG00000088565.1	ENSMUST00000157940.1	misc_RNA	chr12:11688697-11689004
chr12	11697529	11703876	-	L1Md_F2	LINE	L1	chr12	11700545	11700547	-	ENSMUST00000219725.1,ENSMUSG00000112788.1	Gm47821	ENSMUSG00000112788.1	ENSMUST00000219725.1	TEC	chr12:11698868-11700546
chr12	11697529	11703876	-	L1Md_F2	LINE	L1	chr12	11701677	11701679	-	ENSMUST00000218415.1,ENSMUSG00000112158.1	Gm47822	ENSMUSG00000112158.1	ENSMUST00000218415.1	TEC	chr12:11701306-11701678
chr12	11826489	11826966	+	MT2C_Mm	LTR	ERVL	chr12	11826606	11826608	+	ENSMUST00000220575.1,ENSMUSG00000113330.1	Gm34237	ENSMUSG00000113330.1	ENSMUST00000220575.1	lincRNA	chr12:11826607-11897726
chr12	12106736	12106826	+	5S	rRNA	rRNA	chr12	12106736	12106738	+	ENSMUST00000158422.1,ENSMUSG00000089047.1	Gm26171	ENSMUSG00000089047.1	ENSMUST00000158422.1	rRNA	chr12:12106737-12106867
chr12	12700038	12700145	+	U6	snRNA	snRNA	chr12	12700038	12700040	+	ENSMUST00000101943.1,ENSMUSG00000075893.1	Gm25538	ENSMUSG00000075893.1	ENSMUST00000101943.1	snRNA	chr12:12700039-12700145
chr12	12865255	12865748	+	MT2_Mm	LTR	ERVL	chr12	12865569	12865571	+	ENSMUST00000221441.1,ENSMUSG00000113363.1	Gm48187	ENSMUSG00000113363.1	ENSMUST00000221441.1	lincRNA	chr12:12865570-12874689
chr12	12902403	12902771	-	ORR1B1	LTR	ERVL-MaLR	chr12	12902719	12902721	+	ENSMUST00000181381.2,ENSMUSG00000097627.2	4930519A11Rik	ENSMUSG00000097627.2	ENSMUST00000181381.2	lincRNA	chr12:12902720-12907378
chr12	13163627	13163764	-	U8	snRNA	snRNA	chr12	13163762	13163764	-	ENSMUST00000082783.1,ENSMUSG00000064717.1	Gm24208	ENSMUSG00000064717.1	ENSMUST00000082783.1	snoRNA	chr12:13163629-13163763
chr12	13419471	13425917	-	L1Md_T	LINE	L1	chr12	13425716	13425718	-	ENSMUST00000220829.1,ENSMUSG00000113476.1	Gm48309	ENSMUSG00000113476.1	ENSMUST00000220829.1	TEC	chr12:13423260-13425717
chr12	13486976	13487111	-	RMER15	LTR	ERVL	chr12	13487046	13487048	-	ENSMUST00000222785.1,ENSMUSG00000113058.1	Gm48311	ENSMUSG00000113058.1	ENSMUST00000222785.1	antisense	chr12:13484808-13487047
chr12	13487093	13487205	-	RMER15	LTR	ERVL	chr12	13487121	13487123	+	ENSMUST00000221714.1,ENSMUSG00000020576.10	Nbas	ENSMUSG00000020576.10	ENSMUST00000221714.1	protein_coding	chr12:13487122-13583803
chr12	13487093	13487205	-	RMER15	LTR	ERVL	chr12	13487135	13487137	+	ENSMUST00000223081.1,ENSMUSG00000020576.10	Nbas	ENSMUSG00000020576.10	ENSMUST00000223081.1	protein_coding	chr12:13487136-13561730
chr12	13490508	13490615	-	U6	snRNA	snRNA	chr12	13490614	13490616	-	ENSMUST00000101960.1,ENSMUSG00000096163.1	Gm24142	ENSMUSG00000096163.1	ENSMUST00000101960.1	snRNA	chr12:13490509-13490615
chr12	13507861	13507968	-	U6	snRNA	snRNA	chr12	13507967	13507969	-	ENSMUST00000097247.1,ENSMUSG00000096633.1	Gm22170	ENSMUSG00000096633.1	ENSMUST00000097247.1	snRNA	chr12:13507862-13507968
chr12	14130418	14130900	+	L1_Mus3	LINE	L1	chr12	14130647	14130649	-	ENSMUST00000222949.1,ENSMUSG00000113167.1	Gm48482	ENSMUSG00000113167.1	ENSMUST00000222949.1	TEC	chr12:14128116-14130648
chr12	14261315	14261735	+	MTC	LTR	ERVL-MaLR	chr12	14261533	14261535	+	ENSMUST00000222024.1,ENSMUSG00000113336.1	Gm16497	ENSMUSG00000113336.1	ENSMUST00000222024.1	lincRNA	chr12:14261534-14285684
chr12	14261315	14261735	+	MTC	LTR	ERVL-MaLR	chr12	14261555	14261557	+	ENSMUST00000223480.1,ENSMUSG00000113336.1	Gm16497	ENSMUSG00000113336.1	ENSMUST00000223480.1	lincRNA	chr12:14261556-14285725
chr12	14489039	14493602	-	L1Md_F2	LINE	L1	chr12	14493243	14493245	-	ENSMUST00000220577.1,ENSMUSG00000113961.1	Gm48498	ENSMUSG00000113961.1	ENSMUST00000220577.1	processed_pseudogene	chr12:14489404-14493244
chr12	14506586	14506692	+	U6	snRNA	snRNA	chr12	14506586	14506588	+	ENSMUST00000101814.1,ENSMUSG00000075760.1	Gm25414	ENSMUSG00000075760.1	ENSMUST00000101814.1	snRNA	chr12:14506587-14506693
chr12	15020334	15020857	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	15020643	15020645	-	ENSMUST00000183930.1,ENSMUSG00000099215.1	Gm27682	ENSMUSG00000099215.1	ENSMUST00000183930.1	miRNA	chr12:15020535-15020644
chr12	15050384	15050611	-	MTD-int	LTR	ERVL-MaLR	chr12	15050388	15050390	-	ENSMUST00000221781.1,ENSMUSG00000113644.1	4930448C13Rik	ENSMUSG00000113644.1	ENSMUST00000221781.1	lincRNA	chr12:14996389-15050389
chr12	15068058	15068176	+	ID2	SINE	ID	chr12	15068116	15068118	+	ENSMUST00000222816.1,ENSMUSG00000113285.1	Gm36128	ENSMUSG00000113285.1	ENSMUST00000222816.1	transcribed_processed_pseudogene	chr12:15068117-15137518
chr12	15301005	15301274	+	RLTR10B	LTR	ERVK	chr12	15301044	15301046	-	ENSMUST00000220591.1,ENSMUSG00000113734.1	Gm48539	ENSMUSG00000113734.1	ENSMUST00000220591.1	lincRNA	chr12:15278417-15301045
chr12	15480972	15486670	+	L1Md_F	LINE	L1	chr12	15483042	15483044	+	ENSMUST00000222638.1,ENSMUSG00000113069.1	Gm48541	ENSMUSG00000113069.1	ENSMUST00000222638.1	processed_pseudogene	chr12:15483043-15486670
chr12	15725673	15725951	-	IAPLTR2b	LTR	ERVK	chr12	15725912	15725914	+	ENSMUST00000223207.1,ENSMUSG00000098158.2	Gm4804	ENSMUSG00000098158.2	ENSMUST00000223207.1	transcribed_processed_pseudogene	chr12:15725913-15728414
chr12	15816895	15816945	+	C-rich	Low_complexity	Low_complexity	chr12	15816921	15816923	-	ENSMUST00000221518.1,ENSMUSG00000020601.8	Trib2	ENSMUSG00000020601.8	ENSMUST00000221518.1	protein_coding	chr12:15793318-15816922
chr12	15980356	15980536	+	B4A	SINE	B4	chr12	15980487	15980489	-	ENSMUST00000221010.1,ENSMUSG00000113739.1	Gm48584	ENSMUSG00000113739.1	ENSMUST00000221010.1	lincRNA	chr12:15976264-15980488
chr12	16015475	16015628	+	(CGTG)n	Simple_repeat	Simple_repeat	chr12	16015544	16015546	-	ENSMUST00000223158.1,ENSMUSG00000113930.1	Gm36235	ENSMUSG00000113930.1	ENSMUST00000223158.1	lincRNA	chr12:15980647-16015545
chr12	16221267	16221356	+	MLT1J2	LTR	ERVL-MaLR	chr12	16221278	16221280	-	ENSMUST00000221011.1,ENSMUSG00000113975.1	Gm36372	ENSMUSG00000113975.1	ENSMUST00000221011.1	lincRNA	chr12:16204911-16221279
chr12	16561980	16562059	+	B4A	SINE	B4	chr12	16562037	16562039	-	ENSMUST00000223129.1,ENSMUSG00000020593.15	Lpin1	ENSMUSG00000020593.15	ENSMUST00000223129.1	protein_coding	chr12:16559017-16562038
chr12	16674828	16675077	+	B4A	SINE	B4	chr12	16675039	16675041	-	ENSMUST00000160851.1,ENSMUSG00000036523.16	Greb1	ENSMUSG00000036523.16	ENSMUST00000160851.1	protein_coding	chr12:16673809-16675040
chr12	16850552	16850929	+	ERV3-16A3_LTR	LTR	ERVL	chr12	16850880	16850882	-	ENSMUST00000221201.1,ENSMUSG00000114018.1	Gm36495	ENSMUSG00000114018.1	ENSMUST00000221201.1	lincRNA	chr12:16844881-16850881
chr12	17000097	17000220	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr12	17000117	17000119	-	ENSMUST00000054536.10,ENSMUSG00000045679.14	Pqlc3	ENSMUSG00000045679.14	ENSMUST00000054536.10	protein_coding	chr12:16988648-17000118
chr12	17000097	17000220	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr12	17000115	17000117	-	ENSMUST00000156360.1,ENSMUSG00000045679.14	Pqlc3	ENSMUSG00000045679.14	ENSMUST00000156360.1	protein_coding	chr12:16993655-17000116
chr12	17065219	17065584	+	MTC	LTR	ERVL-MaLR	chr12	17065412	17065414	+	ENSMUST00000221508.1,ENSMUSG00000113447.1	Gm48538	ENSMUSG00000113447.1	ENSMUST00000221508.1	lincRNA	chr12:17065413-17074550
chr12	17553723	17553830	-	B1_Mus1	SINE	Alu	chr12	17553767	17553769	+	ENSMUST00000222758.1,ENSMUSG00000113093.1	Gm36862	ENSMUSG00000113093.1	ENSMUST00000222758.1	processed_transcript	chr12:17553768-17564108
chr12	17568845	17568988	-	ERVB2_1A-I_MM-int	LTR	ERVK	chr12	17568848	17568850	-	ENSMUST00000222500.1,ENSMUSG00000113131.1	Gm48290	ENSMUSG00000113131.1	ENSMUST00000222500.1	processed_pseudogene	chr12:17568478-17568849
chr12	17607045	17607476	-	RLTR10C	LTR	ERVK	chr12	17607230	17607232	-	ENSMUST00000222628.1,ENSMUSG00000114062.1	Gm48313	ENSMUSG00000114062.1	ENSMUST00000222628.1	lincRNA	chr12:17603467-17607231
chr12	17644981	17645205	-	7SK	RNA	RNA	chr12	17645204	17645206	-	ENSMUST00000158314.1,ENSMUSG00000088939.1	Gm25925	ENSMUSG00000088939.1	ENSMUST00000158314.1	misc_RNA	chr12:17644900-17645205
chr12	17900326	17901169	+	MurSatRep1	Unknown	Unknown	chr12	17900733	17900735	+	ENSMUST00000221149.1,ENSMUSG00000113642.1	Gm49329	ENSMUSG00000113642.1	ENSMUST00000221149.1	transcribed_unprocessed_pseudogene	chr12:17900734-18062464
chr12	17933020	17933248	+	URR1A	DNA	hAT-Charlie	chr12	17933163	17933165	+	ENSMUST00000221539.1,ENSMUSG00000113536.1	Gm49327	ENSMUSG00000113536.1	ENSMUST00000221539.1	transcribed_unprocessed_pseudogene	chr12:17933164-17939628
chr12	18023714	18024558	+	MurSatRep1	Unknown	Unknown	chr12	18024066	18024068	+	ENSMUST00000221205.1,ENSMUSG00000113416.1	Gm49328	ENSMUSG00000113416.1	ENSMUST00000221205.1	unprocessed_pseudogene	chr12:18024067-18027467
chr12	19301580	19302574	+	MurSatRep1	Unknown	Unknown	chr12	19301652	19301654	+	ENSMUST00000222720.1,ENSMUSG00000113959.1	Gm46339	ENSMUSG00000113959.1	ENSMUST00000222720.1	TEC	chr12:19301653-19305191
chr12	19408011	19408417	+	L1_Mus1	LINE	L1	chr12	19408347	19408349	+	ENSMUST00000232472.1,ENSMUSG00000116705.1	AC124739.1	ENSMUSG00000116705.1	ENSMUST00000232472.1	lincRNA	chr12:19408348-19408740
chr12	19559928	19560830	+	RLTR10-int	LTR	ERVK	chr12	19560109	19560111	+	ENSMUST00000222861.1,ENSMUSG00000113300.1	Gm49371	ENSMUSG00000113300.1	ENSMUST00000222861.1	lincRNA	chr12:19560110-19564157
chr12	19816669	19817483	-	IAPEz-int	LTR	ERVK	chr12	19817366	19817368	-	ENSMUST00000223436.1,ENSMUSG00000114096.1	Gm48641	ENSMUSG00000114096.1	ENSMUST00000223436.1	processed_pseudogene	chr12:19816968-19817367
chr12	19865355	19865500	-	MurSatRep1	Unknown	Unknown	chr12	19865494	19865496	-	ENSMUST00000223086.1,ENSMUSG00000113411.1	Gm48643	ENSMUSG00000113411.1	ENSMUST00000223086.1	processed_pseudogene	chr12:19865126-19865495
chr12	19891798	19892292	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	19891975	19891977	+	ENSMUST00000103822.1,ENSMUSG00000077010.1	Gm22189	ENSMUSG00000077010.1	ENSMUST00000103822.1	miRNA	chr12:19891976-19892061
chr12	20319271	20320117	+	MurSatRep1	Unknown	Unknown	chr12	20319604	20319606	+	ENSMUST00000232034.1,ENSMUSG00000116715.1	AC242683.1	ENSMUSG00000116715.1	ENSMUST00000232034.1	unprocessed_pseudogene	chr12:20319605-20322795
chr12	20451660	20451729	+	GA-rich	Low_complexity	Low_complexity	chr12	20451674	20451676	+	ENSMUST00000232443.1,ENSMUSG00000116537.1	AC163633.1	ENSMUSG00000116537.1	ENSMUST00000232443.1	lincRNA	chr12:20451675-20459211
chr12	20815762	20815819	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr12	20815778	20815780	-	ENSMUST00000189625.1,ENSMUSG00000099759.1	1700030C10Rik	ENSMUSG00000099759.1	ENSMUST00000189625.1	processed_transcript	chr12:20804381-20815779
chr12	20896413	20896747	+	ERVB7_1-LTR_MM	LTR	ERVK	chr12	20896637	20896639	-	ENSMUST00000084451.5,ENSMUSG00000073179.3	Gm10478	ENSMUSG00000073179.3	ENSMUST00000084451.5	pseudogene	chr12:20896239-20896638
chr12	20902146	20902992	-	MurSatRep1	Unknown	Unknown	chr12	20902658	20902660	-	ENSMUST00000079237.6,ENSMUSG00000069755.5	Zfp125	ENSMUSG00000069755.5	ENSMUST00000079237.6	transcribed_unprocessed_pseudogene	chr12:20898574-20902659
chr12	21298868	21298898	+	(GAAA)n	Simple_repeat	Simple_repeat	chr12	21298887	21298889	+	ENSMUST00000222883.1,ENSMUSG00000054309.9	Cpsf3	ENSMUSG00000054309.9	ENSMUST00000222883.1	protein_coding	chr12:21298888-21300115
chr12	21300789	21301279	-	L1Md_F3	LINE	L1	chr12	21301270	21301272	+	ENSMUST00000221992.1,ENSMUSG00000054309.9	Cpsf3	ENSMUSG00000054309.9	ENSMUST00000221992.1	protein_coding	chr12:21301271-21302834
chr12	21309572	21309685	+	B1_Mus1	SINE	Alu	chr12	21309674	21309676	+	ENSMUST00000220940.1,ENSMUSG00000054309.9	Cpsf3	ENSMUSG00000054309.9	ENSMUST00000220940.1	protein_coding	chr12:21309675-21310228
chr12	21354350	21354451	+	U6	snRNA	snRNA	chr12	21354353	21354355	+	ENSMUST00000158372.1,ENSMUSG00000088997.1	Gm22766	ENSMUSG00000088997.1	ENSMUST00000158372.1	snRNA	chr12:21354354-21354452
chr12	21420683	21420807	-	B1_Mur4	SINE	Alu	chr12	21420758	21420760	+	ENSMUST00000227598.1,ENSMUSG00000097055.2	Gm4419	ENSMUSG00000097055.2	ENSMUST00000227598.1	antisense	chr12:21420759-21421064
chr12	22040714	22041222	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	22040912	22040914	+	ENSMUST00000177620.1,ENSMUSG00000094691.1	Gm22908	ENSMUSG00000094691.1	ENSMUST00000177620.1	miRNA	chr12:22040913-22041022
chr12	22587124	22588241	-	MurSatRep1	Unknown	Unknown	chr12	22587634	22587636	-	ENSMUST00000221834.1,ENSMUSG00000113506.1	Gm49377	ENSMUSG00000113506.1	ENSMUST00000221834.1	transcribed_unprocessed_pseudogene	chr12:22584129-22587635
chr12	23199581	23200089	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	23199779	23199781	+	ENSMUST00000103807.1,ENSMUSG00000096441.1	Gm26140	ENSMUSG00000096441.1	ENSMUST00000103807.1	miRNA	chr12:23199780-23199889
chr12	23338246	23338471	+	MTC	LTR	ERVL-MaLR	chr12	23338419	23338421	-	ENSMUST00000173064.1,ENSMUSG00000092472.1	Gm20473	ENSMUSG00000092472.1	ENSMUST00000173064.1	unprocessed_pseudogene	chr12:23338309-23338420
chr12	23460341	23466792	-	L1Md_T	LINE	L1	chr12	23465694	23465696	+	ENSMUST00000222220.1,ENSMUSG00000113451.1	Gm47421	ENSMUSG00000113451.1	ENSMUST00000222220.1	processed_pseudogene	chr12:23465695-23465964
chr12	23780213	23780623	-	L1_Mus1	LINE	L1	chr12	23780264	23780266	-	ENSMUST00000072014.4,ENSMUSG00000071362.2	Gm10330	ENSMUSG00000071362.2	ENSMUST00000072014.4	protein_coding	chr12:23778912-23780265
chr12	23783620	23784464	-	MurSatRep1	Unknown	Unknown	chr12	23784130	23784132	-	ENSMUST00000221301.1,ENSMUSG00000113691.1	Gm38699	ENSMUSG00000113691.1	ENSMUST00000221301.1	unprocessed_pseudogene	chr12:23780857-23784131
chr12	24498294	24498417	+	B1_Mus2	SINE	Alu	chr12	24498358	24498360	+	ENSMUST00000075954.8,ENSMUSG00000059669.8	Taf1b	ENSMUSG00000059669.8	ENSMUST00000075954.8	protein_coding	chr12:24498359-24558539
chr12	24580473	24580852	+	MTD	LTR	ERVL-MaLR	chr12	24580718	24580720	+	ENSMUST00000223442.1,ENSMUSG00000020656.16	Grhl1	ENSMUSG00000020656.16	ENSMUST00000223442.1	protein_coding	chr12:24580719-24617391
chr12	24580473	24580852	+	MTD	LTR	ERVL-MaLR	chr12	24580748	24580750	+	ENSMUST00000020985.8,ENSMUSG00000020656.16	Grhl1	ENSMUSG00000020656.16	ENSMUST00000020985.8	protein_coding	chr12:24580749-24617391
chr12	24762059	24762577	+	RMER12C	LTR	ERVK	chr12	24762340	24762342	+	ENSMUST00000222531.1,ENSMUSG00000114076.1	Gm48896	ENSMUSG00000114076.1	ENSMUST00000222531.1	lincRNA	chr12:24762341-24764936
chr12	25064676	25064858	-	B2_Mm1t	SINE	B2	chr12	25064691	25064693	+	ENSMUST00000220747.1,ENSMUSG00000114148.1	Gm47701	ENSMUSG00000114148.1	ENSMUST00000220747.1	lincRNA	chr12:25064692-25067478
chr12	25181662	25181844	+	ID_B1	SINE	B4	chr12	25181767	25181769	+	ENSMUST00000222804.1,ENSMUSG00000114033.1	Gm47705	ENSMUSG00000114033.1	ENSMUST00000222804.1	lincRNA	chr12:25181768-25189630
chr12	25303953	25304307	-	MLTR14	LTR	ERV1	chr12	25304180	25304182	+	ENSMUST00000221460.1,ENSMUSG00000113669.1	Gm36723	ENSMUSG00000113669.1	ENSMUST00000221460.1	lincRNA	chr12:25304181-25396971
chr12	25316023	25316283	+	ORR1E	LTR	ERVL-MaLR	chr12	25316189	25316191	+	ENSMUST00000222226.1,ENSMUSG00000113669.1	Gm36723	ENSMUSG00000113669.1	ENSMUST00000222226.1	lincRNA	chr12:25316190-25386731
chr12	25394660	25394782	+	ORR1D1	LTR	ERVL-MaLR	chr12	25394754	25394756	+	ENSMUST00000221270.1,ENSMUSG00000113669.1	Gm36723	ENSMUSG00000113669.1	ENSMUST00000221270.1	lincRNA	chr12:25394755-25471979
chr12	25687801	25687889	+	5S	rRNA	rRNA	chr12	25687800	25687802	+	ENSMUST00000158816.1,ENSMUSG00000089441.1	Gm22527	ENSMUSG00000089441.1	ENSMUST00000158816.1	rRNA	chr12:25687801-25687906
chr12	26346494	26346866	+	L1MC3	LINE	L1	chr12	26346716	26346718	+	ENSMUST00000221235.1,ENSMUSG00000114048.1	4930549C15Rik	ENSMUSG00000114048.1	ENSMUST00000221235.1	antisense	chr12:26346717-26371748
chr12	26406391	26406653	-	RLTR17B_Mm	LTR	ERVK	chr12	26406446	26406448	-	ENSMUST00000221994.1,ENSMUSG00000020642.13	Rnf144a	ENSMUSG00000020642.13	ENSMUST00000221994.1	protein_coding	chr12:26404691-26406447
chr12	26597166	26597432	-	B4A	SINE	B4	chr12	26597258	26597260	+	ENSMUST00000223018.1,ENSMUSG00000113524.1	Gm47847	ENSMUSG00000113524.1	ENSMUST00000223018.1	lincRNA	chr12:26597259-26645747
chr12	26834290	26835128	-	RMER17B	LTR	ERVK	chr12	26834858	26834860	-	ENSMUST00000221910.1,ENSMUSG00000113218.1	4933409F18Rik	ENSMUSG00000113218.1	ENSMUST00000221910.1	lincRNA	chr12:26814371-26834859
chr12	26834290	26835128	-	RMER17B	LTR	ERVK	chr12	26834872	26834874	-	ENSMUST00000222026.1,ENSMUSG00000113218.1	4933409F18Rik	ENSMUSG00000113218.1	ENSMUST00000222026.1	lincRNA	chr12:26819785-26834873
chr12	27114908	27115025	-	PB1D10	SINE	Alu	chr12	27114994	27114996	-	ENSMUST00000220998.1,ENSMUSG00000094002.3	Gm9866	ENSMUSG00000094002.3	ENSMUST00000220998.1	lincRNA	chr12:27090237-27114995
chr12	27266535	27266581	+	(CA)n	Simple_repeat	Simple_repeat	chr12	27266566	27266568	-	ENSMUST00000221626.1,ENSMUSG00000114083.1	Gm47860	ENSMUSG00000114083.1	ENSMUST00000221626.1	transcribed_processed_pseudogene	chr12:27262540-27266567
chr12	27342547	27342594	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	27342573	27342575	-	ENSMUST00000079063.6,ENSMUSG00000063632.6	Sox11	ENSMUSG00000063632.6	ENSMUST00000079063.6	protein_coding	chr12:27334264-27342574
chr12	28060438	28060528	-	5S	rRNA	rRNA	chr12	28060527	28060529	-	ENSMUST00000158312.1,ENSMUSG00000088937.1	Gm25923	ENSMUSG00000088937.1	ENSMUST00000158312.1	rRNA	chr12:28060391-28060528
chr12	28299502	28299846	-	ORR1A4	LTR	ERVL-MaLR	chr12	28299645	28299647	-	ENSMUST00000221785.1,ENSMUSG00000113235.1	Gm47872	ENSMUSG00000113235.1	ENSMUST00000221785.1	lincRNA	chr12:28249763-28299646
chr12	28339324	28339679	-	RLTR10B2	LTR	ERVK	chr12	28339375	28339377	-	ENSMUST00000222662.1,ENSMUSG00000113235.1	Gm47872	ENSMUSG00000113235.1	ENSMUST00000222662.1	lincRNA	chr12:28249759-28339376
chr12	28339324	28339679	-	RLTR10B2	LTR	ERVK	chr12	28339408	28339410	-	ENSMUST00000220722.1,ENSMUSG00000113235.1	Gm47872	ENSMUSG00000113235.1	ENSMUST00000220722.1	lincRNA	chr12:28321988-28339409
chr12	28548154	28548559	-	MTC	LTR	ERVL-MaLR	chr12	28548336	28548338	-	ENSMUST00000189735.6,ENSMUSG00000020633.14	Dcdc2c	ENSMUSG00000020633.14	ENSMUST00000189735.6	protein_coding	chr12:28437795-28548337
chr12	28631866	28631972	+	PB1D7	SINE	Alu	chr12	28631916	28631918	-	ENSMUST00000223153.1,ENSMUSG00000061477.4	Rps7	ENSMUSG00000061477.4	ENSMUST00000223153.1	protein_coding	chr12:28631083-28631917
chr12	28653632	28653657	+	(TGG)n	Simple_repeat	Simple_repeat	chr12	28653651	28653653	+	ENSMUST00000221496.1,ENSMUSG00000020630.9	Rnaseh1	ENSMUSG00000020630.9	ENSMUST00000221496.1	protein_coding	chr12:28653652-28659585
chr12	28789587	28789799	-	RCHARR1	DNA	hAT-Charlie	chr12	28789668	28789670	+	ENSMUST00000220880.1,ENSMUSG00000114081.1	Gm48904	ENSMUSG00000114081.1	ENSMUST00000220880.1	TEC	chr12:28789669-28792612
chr12	29035206	29035294	-	5S	rRNA	rRNA	chr12	29035293	29035295	-	ENSMUST00000158958.1,ENSMUSG00000089583.1	Gm23342	ENSMUSG00000089583.1	ENSMUST00000158958.1	rRNA	chr12:29035180-29035294
chr12	30457796	30458143	-	ORR1B2	LTR	ERVL-MaLR	chr12	30458070	30458072	-	ENSMUST00000158247.1,ENSMUSG00000088872.1	Gm25865	ENSMUSG00000088872.1	ENSMUST00000158247.1	miRNA	chr12:30457968-30458071
chr12	30557496	30560083	+	L1_Mur2	LINE	L1	chr12	30558119	30558121	-	ENSMUST00000174912.2,ENSMUSG00000092653.2	Gm25243	ENSMUSG00000092653.2	ENSMUST00000174912.2	miRNA	chr12:30557914-30558120
chr12	31030632	31030892	+	Lx5	LINE	L1	chr12	31030856	31030858	+	ENSMUST00000218679.1,ENSMUSG00000112890.1	Gm18502	ENSMUSG00000112890.1	ENSMUST00000218679.1	processed_pseudogene	chr12:31030857-31031055
chr12	31089417	31089513	-	B4A	SINE	B4	chr12	31089469	31089471	-	ENSMUST00000220011.1,ENSMUSG00000112876.1	Gm32443	ENSMUSG00000112876.1	ENSMUST00000220011.1	lincRNA	chr12:31082581-31089470
chr12	31168460	31168899	-	LTR72_RN	LTR	ERV1	chr12	31168861	31168863	+	ENSMUST00000218473.1,ENSMUSG00000095953.2	6030469F06Rik	ENSMUSG00000095953.2	ENSMUST00000218473.1	lincRNA	chr12:31168862-31185901
chr12	31634625	31634684	+	GC_rich	Low_complexity	Low_complexity	chr12	31634634	31634636	-	ENSMUST00000177962.8,ENSMUSG00000020650.15	Bcap29	ENSMUSG00000020650.15	ENSMUST00000177962.8	protein_coding	chr12:31590967-31634635
chr12	31634625	31634684	+	GC_rich	Low_complexity	Low_complexity	chr12	31634657	31634659	-	ENSMUST00000218543.1,ENSMUSG00000020650.15	Bcap29	ENSMUSG00000020650.15	ENSMUST00000218543.1	protein_coding	chr12:31634075-31634658
chr12	31849420	31849765	-	ORR1A0	LTR	ERVL-MaLR	chr12	31849625	31849627	-	ENSMUST00000220137.1,ENSMUSG00000111987.1	Gm48809	ENSMUSG00000111987.1	ENSMUST00000220137.1	antisense	chr12:31846523-31849626
chr12	31934763	31934896	+	B1_Mus2	SINE	Alu	chr12	31934802	31934804	-	ENSMUST00000176138.1,ENSMUSG00000002996.17	Hbp1	ENSMUSG00000002996.17	ENSMUST00000176138.1	protein_coding	chr12:31930924-31934803
chr12	32061284	32061354	+	C-rich	Low_complexity	Low_complexity	chr12	32061295	32061297	-	ENSMUST00000036497.15,ENSMUSG00000002997.15	Prkar2b	ENSMUSG00000002997.15	ENSMUST00000036497.15	protein_coding	chr12:31958476-32061296
chr12	32080453	32080946	-	RLTR16	LTR	ERVK	chr12	32080849	32080851	-	ENSMUST00000219954.1,ENSMUSG00000112569.1	Gm33111	ENSMUSG00000112569.1	ENSMUST00000219954.1	lincRNA	chr12:32073286-32080850
chr12	32080453	32080946	-	RLTR16	LTR	ERVK	chr12	32080842	32080844	-	ENSMUST00000219617.1,ENSMUSG00000112569.1	Gm33111	ENSMUSG00000112569.1	ENSMUST00000219617.1	lincRNA	chr12:32076350-32080843
chr12	32178324	32178614	-	B4A	SINE	B4	chr12	32178453	32178455	-	ENSMUST00000218848.1,ENSMUSG00000020573.17	Pik3cg	ENSMUSG00000020573.17	ENSMUST00000218848.1	protein_coding	chr12:32175652-32178454
chr12	32355198	32355902	+	L1_Mus1	LINE	L1	chr12	32355201	32355203	-	ENSMUST00000083711.1,ENSMUSG00000065645.1	Gm23875	ENSMUSG00000065645.1	ENSMUST00000083711.1	misc_RNA	chr12:32354885-32355202
chr12	32671644	32676656	-	Lx5b	LINE	L1	chr12	32673293	32673295	-	ENSMUST00000220414.1,ENSMUSG00000112617.1	Gm47937	ENSMUSG00000112617.1	ENSMUST00000220414.1	processed_pseudogene	chr12:32673180-32673294
chr12	32954108	32954257	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr12	32954183	32954185	+	ENSMUST00000020885.12,ENSMUSG00000020570.15	Sypl	ENSMUSG00000020570.15	ENSMUST00000020885.12	protein_coding	chr12:32954184-32976904
chr12	32954108	32954257	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr12	32954246	32954248	+	ENSMUST00000122861.7,ENSMUSG00000020570.15	Sypl	ENSMUSG00000020570.15	ENSMUST00000122861.7	protein_coding	chr12:32954247-32974152
chr12	32965306	32965375	+	T-rich	Low_complexity	Low_complexity	chr12	32965325	32965327	+	ENSMUST00000131562.1,ENSMUSG00000020570.15	Sypl	ENSMUSG00000020570.15	ENSMUST00000131562.1	protein_coding	chr12:32965326-32970342
chr12	33062332	33062511	+	(TTC)n	Simple_repeat	Simple_repeat	chr12	33062440	33062442	+	ENSMUST00000175190.2,ENSMUSG00000092931.2	Gm22904	ENSMUSG00000092931.2	ENSMUST00000175190.2	miRNA	chr12:33062441-33062600
chr12	33139601	33139712	-	PB1D10	SINE	Alu	chr12	33139620	33139622	-	ENSMUST00000144109.1,ENSMUSG00000052125.16	F730043M19Rik	ENSMUSG00000052125.16	ENSMUST00000144109.1	bidirectional_promoter_lncRNA	chr12:33135377-33139621
chr12	33228661	33229154	-	MT2_Mm	LTR	ERVL	chr12	33228853	33228855	-	ENSMUST00000155877.1,ENSMUSG00000079143.3	Atxn7l1os1	ENSMUSG00000079143.3	ENSMUST00000155877.1	antisense	chr12:33193994-33228854
chr12	33302401	33302517	+	(TC)n	Simple_repeat	Simple_repeat	chr12	33302514	33302516	+	ENSMUST00000090597.10,ENSMUSG00000020564.17	Atxn7l1	ENSMUSG00000020564.17	ENSMUST00000090597.10	protein_coding	chr12:33302515-33368273
chr12	34628445	34628938	-	MT2_Mm	LTR	ERVL	chr12	34628637	34628639	-	ENSMUST00000222121.1,ENSMUSG00000113386.1	Gm47357	ENSMUSG00000113386.1	ENSMUST00000222121.1	sense_intronic	chr12:34623907-34628638
chr12	34874491	34874907	-	MLT1C	LTR	ERVL-MaLR	chr12	34874827	34874829	-	ENSMUST00000061679.2,ENSMUSG00000052376.2	4921508M14Rik	ENSMUSG00000052376.2	ENSMUST00000061679.2	TEC	chr12:34873730-34874828
chr12	34906923	34907092	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr12	34906978	34906980	-	ENSMUST00000211632.1,ENSMUSG00000004698.10	Hdac9	ENSMUSG00000004698.10	ENSMUST00000211632.1	protein_coding	chr12:34434313-34906979
chr12	34917046	34917374	-	MTEa	LTR	ERVL-MaLR	chr12	34917094	34917096	-	ENSMUST00000211752.1,ENSMUSG00000004698.10	Hdac9	ENSMUSG00000004698.10	ENSMUST00000211752.1	protein_coding	chr12:34095877-34917095
chr12	35055078	35055162	+	MIRb	SINE	MIR	chr12	35055100	35055102	+	ENSMUST00000221891.1,ENSMUSG00000113792.1	Gm10933	ENSMUSG00000113792.1	ENSMUST00000221891.1	TEC	chr12:35055101-35056961
chr12	35194556	35195082	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	35194896	35194898	-	ENSMUST00000102298.1,ENSMUSG00000076253.1	Mir680-3	ENSMUSG00000076253.1	ENSMUST00000102298.1	miRNA	chr12:35194811-35194897
chr12	35308848	35309175	+	(CAG)n	Simple_repeat	Simple_repeat	chr12	35308890	35308892	+	ENSMUST00000199843.1,ENSMUSG00000105488.1	Gm44396	ENSMUSG00000105488.1	ENSMUST00000199843.1	miRNA	chr12:35308891-35309004
chr12	35441189	35441296	+	U6	snRNA	snRNA	chr12	35441189	35441191	+	ENSMUST00000083261.1,ENSMUSG00000065195.1	Gm26071	ENSMUSG00000065195.1	ENSMUST00000083261.1	snRNA	chr12:35441190-35441296
chr12	35534998	35535086	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr12	35535037	35535039	-	ENSMUST00000116436.8,ENSMUSG00000019256.17	Ahr	ENSMUSG00000019256.17	ENSMUST00000116436.8	protein_coding	chr12:35497974-35535038
chr12	35746071	35746362	+	B4A	SINE	B4	chr12	35746228	35746230	+	ENSMUST00000221361.1,ENSMUSG00000113833.1	Gm48264	ENSMUSG00000113833.1	ENSMUST00000221361.1	TEC	chr12:35746229-35748247
chr12	36326277	36326473	-	L1MB1	LINE	L1	chr12	36326340	36326342	+	ENSMUST00000223024.1,ENSMUSG00000114141.1	Gm34215	ENSMUSG00000114141.1	ENSMUST00000223024.1	lincRNA	chr12:36326341-36331936
chr12	36330335	36331154	-	RMER1A	Other	Other	chr12	36330478	36330480	+	ENSMUST00000221599.1,ENSMUSG00000114141.1	Gm34215	ENSMUSG00000114141.1	ENSMUST00000221599.1	lincRNA	chr12:36330479-36331936
chr12	36373882	36373970	-	B4A	SINE	B4	chr12	36373882	36373884	-	ENSMUST00000158281.1,ENSMUSG00000088906.1	Gm25438	ENSMUSG00000088906.1	ENSMUST00000158281.1	snoRNA	chr12:36373774-36373883
chr12	36816004	36816242	-	Lx9	LINE	L1	chr12	36816204	36816206	+	ENSMUST00000175257.1,ENSMUSG00000092998.1	Mir5099	ENSMUSG00000092998.1	ENSMUST00000175257.1	miRNA	chr12:36816205-36816278
chr12	36951707	36957144	+	L1Md_T	LINE	L1	chr12	36952554	36952556	-	ENSMUST00000222465.1,ENSMUSG00000113507.1	Gm48613	ENSMUSG00000113507.1	ENSMUST00000222465.1	lincRNA	chr12:36945251-36952555
chr12	36951707	36957144	+	L1Md_T	LINE	L1	chr12	36952554	36952556	-	ENSMUST00000223106.1,ENSMUSG00000113507.1	Gm48613	ENSMUSG00000113507.1	ENSMUST00000223106.1	lincRNA	chr12:36945251-36952555
chr12	37013125	37013698	-	L1M3e	LINE	L1	chr12	37013574	37013576	+	ENSMUST00000221210.1,ENSMUSG00000114052.1	Gm48616	ENSMUSG00000114052.1	ENSMUST00000221210.1	lincRNA	chr12:37013575-37089385
chr12	37049216	37049310	+	4.5SRNA	scRNA	scRNA	chr12	37049216	37049218	+	ENSMUST00000222665.1,ENSMUSG00000113764.1	Gm48617	ENSMUSG00000113764.1	ENSMUST00000222665.1	sense_intronic	chr12:37049217-37147149
chr12	37474325	37475389	-	RMER1C	Other	Other	chr12	37475030	37475032	-	ENSMUST00000222104.1,ENSMUSG00000113005.1	Gm34408	ENSMUSG00000113005.1	ENSMUST00000222104.1	antisense	chr12:37446746-37475031
chr12	37937872	37939455	+	L1MC1	LINE	L1	chr12	37938462	37938464	+	ENSMUST00000220862.1,ENSMUSG00000113154.1	Gm48713	ENSMUSG00000113154.1	ENSMUST00000220862.1	TEC	chr12:37938463-37941308
chr12	38074669	38080095	+	L1Md_T	LINE	L1	chr12	38075734	38075736	-	ENSMUST00000221127.1,ENSMUSG00000113608.1	Gm48715	ENSMUSG00000113608.1	ENSMUST00000221127.1	antisense	chr12:38047093-38075735
chr12	38614342	38615049	+	RMER17A	LTR	ERVK	chr12	38614520	38614522	-	ENSMUST00000222132.1,ENSMUSG00000112967.1	4930428E07Rik	ENSMUSG00000112967.1	ENSMUST00000222132.1	antisense	chr12:38552808-38614521
chr12	38614342	38615049	+	RMER17A	LTR	ERVK	chr12	38614520	38614522	-	ENSMUST00000222922.1,ENSMUSG00000112967.1	4930428E07Rik	ENSMUSG00000112967.1	ENSMUST00000222922.1	antisense	chr12:38552823-38614521
chr12	38983391	38984425	-	RMER1A	Other	Other	chr12	38984017	38984019	-	ENSMUST00000220753.1,ENSMUSG00000113092.1	Gm34662	ENSMUSG00000113092.1	ENSMUST00000220753.1	lincRNA	chr12:38973722-38984018
chr12	38983391	38984425	-	RMER1A	Other	Other	chr12	38983999	38984001	-	ENSMUST00000220502.1,ENSMUSG00000113092.1	Gm34662	ENSMUSG00000113092.1	ENSMUST00000220502.1	lincRNA	chr12:38982433-38984000
chr12	39949114	39949147	+	(TA)n	Simple_repeat	Simple_repeat	chr12	39949114	39949116	-	ENSMUST00000222549.1,ENSMUSG00000114147.1	AC134468.1	ENSMUSG00000114147.1	ENSMUST00000222549.1	transcribed_processed_pseudogene	chr12:39948444-39949115
chr12	39950577	39950697	-	L1MD2	LINE	L1	chr12	39950631	39950633	-	ENSMUST00000222820.1,ENSMUSG00000114147.1	AC134468.1	ENSMUSG00000114147.1	ENSMUST00000222820.1	transcribed_processed_pseudogene	chr12:39948629-39950632
chr12	40037975	40038032	+	GC_rich	Low_complexity	Low_complexity	chr12	40038024	40038026	-	ENSMUST00000101472.3,ENSMUSG00000047446.18	Arl4a	ENSMUSG00000047446.18	ENSMUST00000101472.3	protein_coding	chr12:40035822-40038025
chr12	40210928	40211140	+	Lx9	LINE	L1	chr12	40211072	40211074	-	ENSMUST00000165676.1,ENSMUSG00000090582.1	Gm17024	ENSMUSG00000090582.1	ENSMUST00000165676.1	sense_intronic	chr12:40209487-40211073
chr12	40362834	40362982	+	B1_Mus1	SINE	Alu	chr12	40362883	40362885	-	ENSMUST00000221847.1,ENSMUSG00000055917.15	Zfp277	ENSMUSG00000055917.15	ENSMUST00000221847.1	protein_coding	chr12:40360503-40362884
chr12	40776017	40776703	+	RMER6C	LTR	ERVK	chr12	40776702	40776704	+	ENSMUST00000221731.1,ENSMUSG00000035954.10	Dock4	ENSMUSG00000035954.10	ENSMUST00000221731.1	protein_coding	chr12:40776703-40778756
chr12	41024025	41024117	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr12	41024089	41024091	+	ENSMUST00000132121.7,ENSMUSG00000056899.10	Immp2l	ENSMUSG00000056899.10	ENSMUST00000132121.7	protein_coding	chr12:41024090-41955588
chr12	41828451	41828634	-	B2_Mm2	SINE	B2	chr12	41828522	41828524	-	ENSMUST00000221020.1,ENSMUSG00000113105.1	Gm47371	ENSMUSG00000113105.1	ENSMUST00000221020.1	antisense	chr12:41798182-41828523
chr12	42016558	42016991	-	RLTR41	LTR	ERV1	chr12	42016755	42016757	-	ENSMUST00000222917.1,ENSMUSG00000113370.1	Gm46348	ENSMUSG00000113370.1	ENSMUST00000222917.1	lincRNA	chr12:41918708-42016756
chr12	42082530	42088858	-	L1Md_F2	LINE	L1	chr12	42088438	42088440	+	ENSMUST00000222694.1,ENSMUSG00000113989.1	Gm47013	ENSMUSG00000113989.1	ENSMUST00000222694.1	lincRNA	chr12:42088439-42115803
chr12	42151560	42151942	-	IAPEY_LTR	LTR	ERVK	chr12	42151839	42151841	-	ENSMUST00000219118.1,ENSMUSG00000112898.1	Gm47020	ENSMUSG00000112898.1	ENSMUST00000219118.1	lincRNA	chr12:42117824-42151840
chr12	42281708	42281738	-	RLTR17B_Mm	LTR	ERVK	chr12	42281715	42281717	+	ENSMUST00000175473.1,ENSMUSG00000093214.1	Gm25248	ENSMUSG00000093214.1	ENSMUST00000175473.1	miRNA	chr12:42281716-42281813
chr12	43034169	43034350	-	RLTR10B	LTR	ERVK	chr12	43034181	43034183	-	ENSMUST00000219846.1,ENSMUSG00000112407.1	Gm33340	ENSMUSG00000112407.1	ENSMUST00000219846.1	lincRNA	chr12:42967041-43034182
chr12	43034169	43034350	-	RLTR10B	LTR	ERVK	chr12	43034216	43034218	-	ENSMUST00000219475.1,ENSMUSG00000112407.1	Gm33340	ENSMUSG00000112407.1	ENSMUST00000219475.1	lincRNA	chr12:42967078-43034217
chr12	43306072	43306448	+	Lx3_Mus	LINE	L1	chr12	43306142	43306144	+	ENSMUST00000217732.1,ENSMUSG00000112904.1	Gm47030	ENSMUSG00000112904.1	ENSMUST00000217732.1	lincRNA	chr12:43306143-43364488
chr12	43741203	43743632	+	L1_Mus2	LINE	L1	chr12	43743036	43743038	+	ENSMUST00000083070.1,ENSMUSG00000065004.1	Gm26326	ENSMUSG00000065004.1	ENSMUST00000083070.1	snoRNA	chr12:43743037-43743165
chr12	43748764	43754298	+	L1Md_T	LINE	L1	chr12	43750773	43750775	+	ENSMUST00000217755.1,ENSMUSG00000112844.1	Gm47036	ENSMUSG00000112844.1	ENSMUST00000217755.1	processed_pseudogene	chr12:43750774-43754614
chr12	43953892	43961447	-	MMERGLN-int	LTR	ERV1	chr12	43961096	43961098	-	ENSMUST00000219678.1,ENSMUSG00000111960.1	Gm46349	ENSMUSG00000111960.1	ENSMUST00000219678.1	lincRNA	chr12:43955679-43961097
chr12	44120893	44125282	+	L1_Mus3	LINE	L1	chr12	44121755	44121757	+	ENSMUST00000219963.1,ENSMUSG00000112038.1	Gm47056	ENSMUSG00000112038.1	ENSMUST00000219963.1	processed_pseudogene	chr12:44121756-44125600
chr12	44221073	44221534	+	MT2C_Mm	LTR	ERVL	chr12	44221369	44221371	+	ENSMUST00000122902.7,ENSMUSG00000036257.15	Pnpla8	ENSMUSG00000036257.15	ENSMUST00000122902.7	protein_coding	chr12:44221370-44312092
chr12	44274929	44275296	-	MTB	LTR	ERVL-MaLR	chr12	44275270	44275272	+	ENSMUST00000125757.1,ENSMUSG00000036257.15	Pnpla8	ENSMUSG00000036257.15	ENSMUST00000125757.1	protein_coding	chr12:44275271-44282890
chr12	44382228	44382902	-	L1_Mur3	LINE	L1	chr12	44382641	44382643	+	ENSMUST00000218540.1,ENSMUSG00000020598.16	Nrcam	ENSMUSG00000020598.16	ENSMUST00000218540.1	protein_coding	chr12:44382642-44539473
chr12	44964833	44965036	-	L1Md_F3	LINE	L1	chr12	44964892	44964894	-	ENSMUST00000219623.1,ENSMUSG00000086012.2	Gm15902	ENSMUSG00000086012.2	ENSMUST00000219623.1	sense_intronic	chr12:44961417-44964893
chr12	45359695	45359783	+	5S	rRNA	rRNA	chr12	45359698	45359700	+	ENSMUST00000158601.1,ENSMUSG00000089226.1	Gm22076	ENSMUSG00000089226.1	ENSMUST00000158601.1	rRNA	chr12:45359699-45359782
chr12	45429136	45429429	-	IAPEY5_LTR	LTR	ERVK	chr12	45429376	45429378	+	ENSMUST00000219455.1,ENSMUSG00000092404.2	Gm9921	ENSMUSG00000092404.2	ENSMUST00000219455.1	lincRNA	chr12:45429377-45438625
chr12	45736869	45736951	+	Lx9	LINE	L1	chr12	45736900	45736902	-	ENSMUST00000220114.1,ENSMUSG00000112859.1	Gm48522	ENSMUSG00000112859.1	ENSMUST00000220114.1	lincRNA	chr12:45731415-45736901
chr12	45984343	45984546	+	U17	snRNA	snRNA	chr12	45984342	45984344	+	ENSMUST00000082866.1,ENSMUSG00000064800.1	Gm24948	ENSMUSG00000064800.1	ENSMUST00000082866.1	snoRNA	chr12:45984343-45984549
chr12	46686472	46686506	+	C-rich	Low_complexity	Low_complexity	chr12	46686473	46686475	-	ENSMUST00000218252.1,ENSMUSG00000112169.1	Gm48536	ENSMUSG00000112169.1	ENSMUST00000218252.1	TEC	chr12:46683145-46686474
chr12	46832655	46832846	-	7SK	RNA	RNA	chr12	46832806	46832808	-	ENSMUST00000158602.1,ENSMUSG00000089227.1	Gm25051	ENSMUSG00000089227.1	ENSMUST00000158602.1	misc_RNA	chr12:46832559-46832807
chr12	47531935	47532427	+	MT2_Mm	LTR	ERVL	chr12	47532256	47532258	+	ENSMUST00000218324.1,ENSMUSG00000112232.1	Gm48578	ENSMUSG00000112232.1	ENSMUST00000218324.1	lincRNA	chr12:47532257-47544289
chr12	48493604	48495557	-	L1Md_F2	LINE	L1	chr12	48495218	48495220	+	ENSMUST00000218671.1,ENSMUSG00000112085.1	Gm48587	ENSMUSG00000112085.1	ENSMUST00000218671.1	unprocessed_pseudogene	chr12:48495219-48495486
chr12	48905987	48906218	+	B4A	SINE	B4	chr12	48906043	48906045	-	ENSMUST00000205588.1,ENSMUSG00000108639.1	AC124542.1	ENSMUSG00000108639.1	ENSMUST00000205588.1	unprocessed_pseudogene	chr12:48903821-48906044
chr12	49009882	49009989	+	U6	snRNA	snRNA	chr12	49009882	49009884	+	ENSMUST00000082682.1,ENSMUSG00000064616.1	Gm26454	ENSMUSG00000064616.1	ENSMUST00000082682.1	snRNA	chr12:49009883-49009989
chr12	49381878	49381982	+	G-rich	Low_complexity	Low_complexity	chr12	49381884	49381886	-	ENSMUST00000218927.1,ENSMUSG00000112763.1	Gm34304	ENSMUSG00000112763.1	ENSMUST00000218927.1	lincRNA	chr12:49368729-49381885
chr12	49389647	49389677	+	AT_rich	Low_complexity	Low_complexity	chr12	49389651	49389653	+	ENSMUST00000127041.2,ENSMUSG00000104861.1	3110039M20Rik	ENSMUSG00000104861.1	ENSMUST00000127041.2	lincRNA	chr12:49389652-49407360
chr12	50752568	50753279	-	Tigger7	DNA	TcMar-Tigger	chr12	50753096	50753098	+	ENSMUST00000220240.1,ENSMUSG00000112372.1	Gm48779	ENSMUSG00000112372.1	ENSMUST00000220240.1	lincRNA	chr12:50753097-50900985
chr12	51370208	51370710	-	RMER17A	LTR	ERVK	chr12	51370674	51370676	+	ENSMUST00000152236.1,ENSMUSG00000035293.13	G2e3	ENSMUSG00000035293.13	ENSMUST00000152236.1	protein_coding	chr12:51370675-51374077
chr12	51422043	51422758	+	L1_Mus1	LINE	L1	chr12	51422693	51422695	+	ENSMUST00000219686.1,ENSMUSG00000020952.10	Scfd1	ENSMUSG00000020952.10	ENSMUST00000219686.1	protein_coding	chr12:51422694-51442583
chr12	51740240	51740342	-	U6	snRNA	snRNA	chr12	51740341	51740343	-	ENSMUST00000158721.1,ENSMUSG00000089346.1	Gm22663	ENSMUSG00000089346.1	ENSMUST00000158721.1	snRNA	chr12:51740241-51740342
chr12	51765231	51765259	+	(A)n	Simple_repeat	Simple_repeat	chr12	51765230	51765232	-	ENSMUST00000218626.1,ENSMUSG00000035247.16	Hectd1	ENSMUSG00000035247.16	ENSMUST00000218626.1	protein_coding	chr12:51758038-51765231
chr12	51922847	51922957	-	B1_Mus2	SINE	Alu	chr12	51922900	51922902	-	ENSMUST00000219641.1,ENSMUSG00000035181.6	Heatr5a	ENSMUSG00000035181.6	ENSMUST00000219641.1	protein_coding	chr12:51919245-51922901
chr12	52175279	52176187	-	IAPEz-int	LTR	ERVK	chr12	52176086	52176088	+	ENSMUST00000162111.1,ENSMUSG00000035142.18	Nubpl	ENSMUSG00000035142.18	ENSMUST00000162111.1	protein_coding	chr12:52176087-52271079
chr12	52503906	52504032	+	(CG)n	Simple_repeat	Simple_repeat	chr12	52503971	52503973	+	ENSMUST00000218755.1,ENSMUSG00000035133.9	Arhgap5	ENSMUSG00000035133.9	ENSMUST00000218755.1	protein_coding	chr12:52503972-52545639
chr12	52503906	52504032	+	(CG)n	Simple_repeat	Simple_repeat	chr12	52504015	52504017	+	ENSMUST00000219443.1,ENSMUSG00000035133.9	Arhgap5	ENSMUSG00000035133.9	ENSMUST00000219443.1	protein_coding	chr12:52504016-52571975
chr12	52504321	52504353	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	52504341	52504343	+	ENSMUST00000217820.1,ENSMUSG00000035133.9	Arhgap5	ENSMUSG00000035133.9	ENSMUST00000217820.1	protein_coding	chr12:52504342-52568835
chr12	52581304	52581733	+	RLTR10C	LTR	ERVK	chr12	52581408	52581410	-	ENSMUST00000218869.1,ENSMUSG00000112437.1	Gm35188	ENSMUSG00000112437.1	ENSMUST00000218869.1	lincRNA	chr12:52496326-52581409
chr12	52603787	52603893	+	U6	snRNA	snRNA	chr12	52603787	52603789	+	ENSMUST00000082729.1,ENSMUSG00000064663.1	Gm24859	ENSMUSG00000064663.1	ENSMUST00000082729.1	snRNA	chr12:52603788-52603894
chr12	52604485	52604591	-	U6	snRNA	snRNA	chr12	52604590	52604592	-	ENSMUST00000082555.1,ENSMUSG00000064489.1	Gm23296	ENSMUSG00000064489.1	ENSMUST00000082555.1	snRNA	chr12:52604485-52604591
chr12	53046706	53046826	-	5S	rRNA	rRNA	chr12	53046825	53046827	-	ENSMUST00000093682.1,ENSMUSG00000070192.1	n-R5s58	ENSMUSG00000070192.1	ENSMUST00000093682.1	rRNA	chr12:53046708-53046826
chr12	54106669	54107080	-	MTA_Mm	LTR	ERVL-MaLR	chr12	54106884	54106886	-	ENSMUST00000219480.1,ENSMUSG00000112549.1	Gm35818	ENSMUSG00000112549.1	ENSMUST00000219480.1	lincRNA	chr12:54091430-54106885
chr12	54391294	54391657	+	RLTR10	LTR	ERVK	chr12	54391317	54391319	-	ENSMUST00000223334.1,ENSMUSG00000113970.1	Gm7550	ENSMUSG00000113970.1	ENSMUST00000223334.1	lincRNA	chr12:54388042-54391318
chr12	54399965	54400379	-	RLTR26_Mus	LTR	ERVK	chr12	54400175	54400177	+	ENSMUST00000217924.1,ENSMUSG00000112053.1	Gm46328	ENSMUSG00000112053.1	ENSMUST00000217924.1	lincRNA	chr12:54400176-54405654
chr12	54516873	54517197	-	ORR1A2	LTR	ERVL-MaLR	chr12	54517078	54517080	-	ENSMUST00000223133.1,ENSMUSG00000113947.1	Gm10465	ENSMUSG00000113947.1	ENSMUST00000223133.1	lincRNA	chr12:54512421-54517079
chr12	54658807	54658961	+	Lx8	LINE	L1	chr12	54658819	54658821	+	ENSMUST00000223505.1,ENSMUSG00000113096.1	Gm40884	ENSMUSG00000113096.1	ENSMUST00000223505.1	lincRNA	chr12:54658820-54659907
chr12	54666675	54666786	-	5S	rRNA	rRNA	chr12	54666785	54666787	-	ENSMUST00000175581.1,ENSMUSG00000093322.1	Gm24971	ENSMUSG00000093322.1	ENSMUST00000175581.1	rRNA	chr12:54666677-54666786
chr12	54666786	54666865	-	MTEb	LTR	ERVL-MaLR	chr12	54666785	54666787	-	ENSMUST00000175581.1,ENSMUSG00000093322.1	Gm24971	ENSMUSG00000093322.1	ENSMUST00000175581.1	rRNA	chr12:54666677-54666786
chr12	54696781	54696946	+	U1	snRNA	snRNA	chr12	54696781	54696783	+	ENSMUST00000179621.1,ENSMUSG00000096349.1	Gm22513	ENSMUSG00000096349.1	ENSMUST00000179621.1	snRNA	chr12:54696782-54696945
chr12	54710307	54710472	+	U1	snRNA	snRNA	chr12	54710307	54710309	+	ENSMUST00000177653.1,ENSMUSG00000096214.1	Gm22634	ENSMUSG00000096214.1	ENSMUST00000177653.1	snRNA	chr12:54710308-54710471
chr12	54714217	54714381	+	U1	snRNA	snRNA	chr12	54714217	54714219	+	ENSMUST00000179675.1,ENSMUSG00000094826.1	Gm23804	ENSMUSG00000094826.1	ENSMUST00000179675.1	snRNA	chr12:54714218-54714381
chr12	54719161	54719326	-	U1	snRNA	snRNA	chr12	54719325	54719327	-	ENSMUST00000101973.1,ENSMUSG00000096659.1	Gm25679	ENSMUSG00000096659.1	ENSMUST00000101973.1	snRNA	chr12:54719163-54719326
chr12	54729601	54729766	+	U1	snRNA	snRNA	chr12	54729601	54729603	+	ENSMUST00000178333.1,ENSMUSG00000093815.1	Gm26444	ENSMUSG00000093815.1	ENSMUST00000178333.1	snRNA	chr12:54729602-54729765
chr12	54734554	54734718	-	U1	snRNA	snRNA	chr12	54734717	54734719	-	ENSMUST00000179155.1,ENSMUSG00000095590.1	Gm24305	ENSMUSG00000095590.1	ENSMUST00000179155.1	snRNA	chr12:54734555-54734718
chr12	54738457	54738622	-	U1	snRNA	snRNA	chr12	54738621	54738623	-	ENSMUST00000178469.1,ENSMUSG00000096206.1	Gm22317	ENSMUSG00000096206.1	ENSMUST00000178469.1	snRNA	chr12:54738459-54738622
chr12	54770900	54771044	-	B1_Mm	SINE	Alu	chr12	54770981	54770983	-	ENSMUST00000218337.1,ENSMUSG00000005656.9	Snx6	ENSMUSG00000005656.9	ENSMUST00000218337.1	protein_coding	chr12:54768003-54770982
chr12	54862871	54862914	+	(CGGG)n	Simple_repeat	Simple_repeat	chr12	54862876	54862878	-	ENSMUST00000078124.7,ENSMUSG00000062929.8	Cfl2	ENSMUSG00000062929.8	ENSMUST00000078124.7	protein_coding	chr12:54858817-54862877
chr12	54985925	54986040	+	GC_rich	Low_complexity	Low_complexity	chr12	54985935	54985937	-	ENSMUST00000173177.1,ENSMUSG00000035021.13	Baz1a	ENSMUSG00000035021.13	ENSMUST00000173177.1	protein_coding	chr12:54975236-54985936
chr12	54997071	54997177	+	U6	snRNA	snRNA	chr12	54997071	54997073	+	ENSMUST00000158297.1,ENSMUSG00000088922.1	Gm24296	ENSMUSG00000088922.1	ENSMUST00000158297.1	snRNA	chr12:54997072-54997177
chr12	55124453	55124487	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr12	55124468	55124470	+	ENSMUST00000177768.2,ENSMUSG00000095595.2	Fam177a	ENSMUSG00000095595.2	ENSMUST00000177768.2	protein_coding	chr12:55124469-55142104
chr12	55226035	55226222	+	MTD	LTR	ERVL-MaLR	chr12	55226071	55226073	-	ENSMUST00000220144.1,ENSMUSG00000112690.1	Gm2446	ENSMUSG00000112690.1	ENSMUST00000220144.1	unprocessed_pseudogene	chr12:55217176-55226072
chr12	55407360	55407397	-	ID	SINE	ID	chr12	55407382	55407384	+	ENSMUST00000162972.1,ENSMUSG00000021024.14	Psma6	ENSMUSG00000021024.14	ENSMUST00000162972.1	protein_coding	chr12:55407383-55412287
chr12	55816471	55816546	-	L1Md_F3	LINE	L1	chr12	55816526	55816528	-	ENSMUST00000217762.1,ENSMUSG00000112393.1	Gm48655	ENSMUSG00000112393.1	ENSMUST00000217762.1	TEC	chr12:55815184-55816527
chr12	55838833	55839007	-	B3A	SINE	B2	chr12	55838869	55838871	+	ENSMUST00000219337.1,ENSMUSG00000012076.8	Brms1l	ENSMUSG00000012076.8	ENSMUST00000219337.1	protein_coding	chr12:55838870-55839739
chr12	55910820	55910923	-	U6	snRNA	snRNA	chr12	55910922	55910924	-	ENSMUST00000083310.1,ENSMUSG00000065244.1	Gm22296	ENSMUSG00000065244.1	ENSMUST00000083310.1	snRNA	chr12:55910821-55910923
chr12	56056669	56056758	-	5S	rRNA	rRNA	chr12	56056754	56056756	-	ENSMUST00000175559.1,ENSMUSG00000093300.1	Gm23799	ENSMUSG00000093300.1	ENSMUST00000175559.1	rRNA	chr12:56056636-56056755
chr12	56189406	56189427	+	(GGA)n	Simple_repeat	Simple_repeat	chr12	56189413	56189415	+	ENSMUST00000220417.1,ENSMUSG00000112650.1	Gm5184	ENSMUSG00000112650.1	ENSMUST00000220417.1	processed_pseudogene	chr12:56189414-56191115
chr12	56500791	56500971	+	MER53	DNA	hAT	chr12	56500827	56500829	-	ENSMUST00000219957.1,ENSMUSG00000112468.1	Gm47720	ENSMUSG00000112468.1	ENSMUST00000219957.1	TEC	chr12:56498688-56500828
chr12	56505677	56505731	+	(TTTG)n	Simple_repeat	Simple_repeat	chr12	56505684	56505686	-	ENSMUST00000218497.1,ENSMUSG00000112343.1	Sfta3-ps	ENSMUSG00000112343.1	ENSMUST00000218497.1	processed_transcript	chr12:56490473-56505685
chr12	56535075	56535120	+	polypurine	Low_complexity	Low_complexity	chr12	56535105	56535107	-	ENSMUST00000178477.8,ENSMUSG00000001496.15	Nkx2-1	ENSMUSG00000001496.15	ENSMUST00000178477.8	protein_coding	chr12:56531958-56535106
chr12	56590846	56591241	+	MTA_Mm	LTR	ERVL-MaLR	chr12	56591058	56591060	+	ENSMUST00000173553.7,ENSMUSG00000092515.8	C87198	ENSMUSG00000092515.8	ENSMUST00000173553.7	lincRNA	chr12:56591059-56594996
chr12	56590846	56591241	+	MTA_Mm	LTR	ERVL-MaLR	chr12	56591068	56591070	+	ENSMUST00000182261.1,ENSMUSG00000092515.8	C87198	ENSMUSG00000092515.8	ENSMUST00000182261.1	lincRNA	chr12:56591069-56594532
chr12	56628547	56629041	-	MT2_Mm	LTR	ERVL	chr12	56628983	56628985	+	ENSMUST00000218378.1,ENSMUSG00000112618.1	Gm48835	ENSMUSG00000112618.1	ENSMUST00000218378.1	TEC	chr12:56628984-56630262
chr12	57273301	57273398	-	Lx3A	LINE	L1	chr12	57273311	57273313	-	ENSMUST00000140773.1,ENSMUSG00000078982.3	Gm11025	ENSMUSG00000078982.3	ENSMUST00000140773.1	processed_pseudogene	chr12:57272847-57273312
chr12	57450028	57450160	-	MER20	DNA	hAT-Charlie	chr12	57450119	57450121	-	ENSMUST00000145464.1,ENSMUSG00000086372.1	Gm16246	ENSMUSG00000086372.1	ENSMUST00000145464.1	antisense	chr12:57441190-57450120
chr12	58924389	58924491	-	MTE2a	LTR	ERVL-MaLR	chr12	58924458	58924460	-	ENSMUST00000220004.1,ENSMUSG00000112649.1	Gm47647	ENSMUSG00000112649.1	ENSMUST00000220004.1	transcribed_processed_pseudogene	chr12:58923194-58924459
chr12	59024609	59024729	+	B2_Mm2	SINE	B2	chr12	59024665	59024667	+	ENSMUST00000182710.1,ENSMUSG00000060121.15	Gemin2	ENSMUSG00000060121.15	ENSMUST00000182710.1	protein_coding	chr12:59024666-59027887
chr12	59040334	59040521	+	U2	snRNA	snRNA	chr12	59040334	59040336	+	ENSMUST00000083298.1,ENSMUSG00000065232.1	Gm22973	ENSMUSG00000065232.1	ENSMUST00000083298.1	snRNA	chr12:59040335-59040525
chr12	59044677	59044779	+	PB1	SINE	Alu	chr12	59044733	59044735	-	ENSMUST00000217873.1,ENSMUSG00000020993.9	Trappc6b	ENSMUSG00000020993.9	ENSMUST00000217873.1	protein_coding	chr12:59043258-59044734
chr12	59066930	59066966	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr12	59066942	59066944	+	ENSMUST00000219176.1,ENSMUSG00000020994.5	Pnn	ENSMUSG00000020994.5	ENSMUST00000219176.1	protein_coding	chr12:59066943-59069175
chr12	59066930	59066966	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr12	59066963	59066965	+	ENSMUST00000217676.1,ENSMUSG00000020994.5	Pnn	ENSMUSG00000020994.5	ENSMUST00000217676.1	protein_coding	chr12:59066964-59068691
chr12	59168455	59168917	-	L1_Mur1	LINE	L1	chr12	59168858	59168860	+	ENSMUST00000177222.7,ENSMUSG00000021000.17	Mia2	ENSMUSG00000021000.17	ENSMUST00000177222.7	protein_coding	chr12:59168859-59189640
chr12	59237085	59237294	+	B3	SINE	B2	chr12	59237175	59237177	-	ENSMUST00000184357.1,ENSMUSG00000098820.1	Gm27284	ENSMUSG00000098820.1	ENSMUST00000184357.1	miRNA	chr12:59237107-59237176
chr12	59719895	59721348	+	Lx2B	LINE	L1	chr12	59720328	59720330	-	ENSMUST00000219078.1,ENSMUSG00000112355.1	Gm48285	ENSMUSG00000112355.1	ENSMUST00000219078.1	TEC	chr12:59718310-59720329
chr12	59977218	59977792	-	L1MA5A	LINE	L1	chr12	59977224	59977226	-	ENSMUST00000218423.1,ENSMUSG00000112050.1	Gm29809	ENSMUSG00000112050.1	ENSMUST00000218423.1	processed_pseudogene	chr12:59976733-59977225
chr12	60735497	60735602	+	U6	snRNA	snRNA	chr12	60735497	60735499	+	ENSMUST00000158978.1,ENSMUSG00000089603.1	Gm23059	ENSMUSG00000089603.1	ENSMUST00000158978.1	snRNA	chr12:60735498-60735604
chr12	61189949	61195218	-	L1Md_F2	LINE	L1	chr12	61195125	61195127	+	ENSMUST00000220664.1,ENSMUSG00000114112.1	Gm48301	ENSMUSG00000114112.1	ENSMUST00000220664.1	lincRNA	chr12:61195126-61234643
chr12	61855271	61856284	-	Lx3_Mus	LINE	L1	chr12	61856267	61856269	+	ENSMUST00000189933.1,ENSMUSG00000035653.16	Lrfn5	ENSMUSG00000035653.16	ENSMUST00000189933.1	protein_coding	chr12:61856268-61858342
chr12	61866886	61867093	-	B3	SINE	B2	chr12	61867055	61867057	+	ENSMUST00000122715.1,ENSMUSG00000084664.1	Gm23213	ENSMUSG00000084664.1	ENSMUST00000122715.1	misc_RNA	chr12:61867056-61867368
chr12	61867055	61867289	+	7SK	RNA	RNA	chr12	61867055	61867057	+	ENSMUST00000122715.1,ENSMUSG00000084664.1	Gm23213	ENSMUSG00000084664.1	ENSMUST00000122715.1	misc_RNA	chr12:61867056-61867368
chr12	61990757	61993644	-	IAPEY4_I-int	LTR	ERVK	chr12	61991768	61991770	-	ENSMUST00000221538.1,ENSMUSG00000113725.1	Gm48358	ENSMUSG00000113725.1	ENSMUST00000221538.1	TEC	chr12:61990302-61991769
chr12	62464278	62464434	-	L1_Mus3	LINE	L1	chr12	62464278	62464280	-	ENSMUST00000223532.1,ENSMUSG00000113153.1	Gm48367	ENSMUSG00000113153.1	ENSMUST00000223532.1	processed_pseudogene	chr12:62463949-62464279
chr12	62535213	62537790	+	IAPEz-int	LTR	ERVK	chr12	62535345	62535347	+	ENSMUST00000222266.1,ENSMUSG00000113890.1	Gm48368	ENSMUSG00000113890.1	ENSMUST00000222266.1	processed_pseudogene	chr12:62535346-62537149
chr12	63168347	63173707	+	Lx5c	LINE	L1	chr12	63170180	63170182	+	ENSMUST00000221219.1,ENSMUSG00000113393.1	Gm48415	ENSMUSG00000113393.1	ENSMUST00000221219.1	processed_pseudogene	chr12:63170181-63171903
chr12	63351186	63357584	+	L1Md_A	LINE	L1	chr12	63355783	63355785	+	ENSMUST00000222999.1,ENSMUSG00000114123.1	Gm48416	ENSMUSG00000114123.1	ENSMUST00000222999.1	processed_pseudogene	chr12:63355784-63357904
chr12	63570162	63575388	+	L1Md_T	LINE	L1	chr12	63571862	63571864	+	ENSMUST00000220626.1,ENSMUSG00000112972.1	Gm48417	ENSMUSG00000112972.1	ENSMUST00000220626.1	processed_pseudogene	chr12:63571863-63575707
chr12	63609868	63609974	+	U6	snRNA	snRNA	chr12	63609867	63609869	+	ENSMUST00000083024.1,ENSMUSG00000064958.1	Gm24921	ENSMUSG00000064958.1	ENSMUST00000083024.1	snRNA	chr12:63609868-63609974
chr12	63927810	63931448	+	L1Md_F2	LINE	L1	chr12	63927953	63927955	+	ENSMUST00000222419.1,ENSMUSG00000113684.1	Gm48418	ENSMUSG00000113684.1	ENSMUST00000222419.1	processed_pseudogene	chr12:63927954-63931761
chr12	64143581	64144096	+	RLTR20A4	LTR	ERVK	chr12	64143747	64143749	+	ENSMUST00000222001.1,ENSMUSG00000113208.1	Gm48421	ENSMUSG00000113208.1	ENSMUST00000222001.1	lincRNA	chr12:64143748-64197261
chr12	64152755	64153247	-	MT2_Mm	LTR	ERVL	chr12	64152947	64152949	-	ENSMUST00000221687.1,ENSMUSG00000113152.1	Gm48422	ENSMUSG00000113152.1	ENSMUST00000221687.1	lincRNA	chr12:64147856-64152948
chr12	64963263	64963461	+	MamRep605	LTR?	LTR?	chr12	64963369	64963371	-	ENSMUST00000021331.8,ENSMUSG00000020948.9	Klhl28	ENSMUSG00000020948.9	ENSMUST00000021331.8	protein_coding	chr12:64943212-64963370
chr12	65036346	65036405	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	65036365	65036367	+	ENSMUST00000129956.1,ENSMUSG00000035597.19	Prpf39	ENSMUSG00000035597.19	ENSMUST00000129956.1	protein_coding	chr12:65036366-65063386
chr12	65050990	65051132	-	B1_Mm	SINE	Alu	chr12	65051110	65051112	+	ENSMUST00000220729.1,ENSMUSG00000035597.19	Prpf39	ENSMUSG00000035597.19	ENSMUST00000220729.1	protein_coding	chr12:65051111-65055027
chr12	65071101	65071151	+	(A)n	Simple_repeat	Simple_repeat	chr12	65071132	65071134	-	ENSMUST00000220957.1,ENSMUSG00000020949.9	Fkbp3	ENSMUSG00000020949.9	ENSMUST00000220957.1	protein_coding	chr12:65062424-65071133
chr12	65071101	65071151	+	(A)n	Simple_repeat	Simple_repeat	chr12	65071139	65071141	-	ENSMUST00000222684.1,ENSMUSG00000020949.9	Fkbp3	ENSMUSG00000020949.9	ENSMUST00000222684.1	protein_coding	chr12:65062424-65071140
chr12	65182014	65182514	-	L1_Mus3	LINE	L1	chr12	65182379	65182381	+	ENSMUST00000221147.1,ENSMUSG00000113228.1	4930471E15Rik	ENSMUSG00000113228.1	ENSMUST00000221147.1	lincRNA	chr12:65182380-65186387
chr12	65225363	65225584	-	B3	SINE	B2	chr12	65225516	65225518	+	ENSMUST00000046331.4,ENSMUSG00000035560.5	Wdr20rt	ENSMUSG00000035560.5	ENSMUST00000046331.4	protein_coding	chr12:65225517-65228454
chr12	65225363	65225584	-	B3	SINE	B2	chr12	65225523	65225525	+	ENSMUST00000221658.1,ENSMUSG00000035560.5	Wdr20rt	ENSMUSG00000035560.5	ENSMUST00000221658.1	protein_coding	chr12:65225524-65228456
chr12	65530251	65530325	+	U6	snRNA	snRNA	chr12	65530251	65530253	+	ENSMUST00000157816.1,ENSMUSG00000088441.1	Gm25599	ENSMUSG00000088441.1	ENSMUST00000157816.1	snRNA	chr12:65530252-65530354
chr12	66368246	66368586	-	ORR1A1	LTR	ERVL-MaLR	chr12	66368384	66368386	-	ENSMUST00000221562.1,ENSMUSG00000114093.1	Gm47979	ENSMUSG00000114093.1	ENSMUST00000221562.1	lincRNA	chr12:66333502-66368385
chr12	66458161	66458498	-	L2	LINE	L2	chr12	66458441	66458443	-	ENSMUST00000223245.1,ENSMUSG00000113288.1	Gm47982	ENSMUSG00000113288.1	ENSMUST00000223245.1	TEC	chr12:66456103-66458442
chr12	66825521	66825920	-	MTB_Mm	LTR	ERVL-MaLR	chr12	66825728	66825730	-	ENSMUST00000177690.1,ENSMUSG00000034912.17	Mdga2	ENSMUSG00000034912.17	ENSMUST00000177690.1	protein_coding	chr12:66689496-66825729
chr12	66942319	66942572	+	RLTR27	LTR	ERVK	chr12	66942410	66942412	+	ENSMUST00000221928.1,ENSMUSG00000114180.1	Gm47989	ENSMUSG00000114180.1	ENSMUST00000221928.1	TEC	chr12:66942411-66942521
chr12	67122901	67122924	+	(A)n	Simple_repeat	Simple_repeat	chr12	67122919	67122921	-	ENSMUST00000221673.1,ENSMUSG00000113698.1	Gm47987	ENSMUSG00000113698.1	ENSMUST00000221673.1	TEC	chr12:67120126-67122920
chr12	67489111	67489231	-	5S	rRNA	rRNA	chr12	67489230	67489232	-	ENSMUST00000083299.1,ENSMUSG00000065233.1	n-R5s60	ENSMUSG00000065233.1	ENSMUST00000083299.1	rRNA	chr12:67489113-67489231
chr12	67489231	67489783	-	L1_Mus4	LINE	L1	chr12	67489230	67489232	-	ENSMUST00000083299.1,ENSMUSG00000065233.1	n-R5s60	ENSMUSG00000065233.1	ENSMUST00000083299.1	rRNA	chr12:67489113-67489231
chr12	67651165	67651841	+	RMER19A	LTR	ERVK	chr12	67651384	67651386	+	ENSMUST00000222891.1,ENSMUSG00000114010.1	Gm47432	ENSMUSG00000114010.1	ENSMUST00000222891.1	lincRNA	chr12:67651385-67658263
chr12	67669270	67669831	+	RLTR22_Mus	LTR	ERVK	chr12	67669275	67669277	-	ENSMUST00000223448.1,ENSMUSG00000113657.1	Gm17821	ENSMUSG00000113657.1	ENSMUST00000223448.1	processed_pseudogene	chr12:67658527-67669276
chr12	67822393	67822738	+	IAPEY2_LTR	LTR	ERVK	chr12	67822395	67822397	-	ENSMUST00000222060.1,ENSMUSG00000114128.1	Gm47452	ENSMUSG00000114128.1	ENSMUST00000222060.1	processed_pseudogene	chr12:67822018-67822396
chr12	68066692	68067071	+	MTD	LTR	ERVL-MaLR	chr12	68067036	68067038	-	ENSMUST00000220843.1,ENSMUSG00000113526.1	Gm47453	ENSMUSG00000113526.1	ENSMUST00000220843.1	lincRNA	chr12:68047704-68067037
chr12	68434859	68441302	-	L1Md_T	LINE	L1	chr12	68440281	68440283	-	ENSMUST00000220950.1,ENSMUSG00000113161.1	Gm47457	ENSMUSG00000113161.1	ENSMUST00000220950.1	TEC	chr12:68435808-68440282
chr12	68445376	68449950	+	L1Md_F	LINE	L1	chr12	68445832	68445834	-	ENSMUST00000220867.1,ENSMUSG00000113867.1	Gm47456	ENSMUSG00000113867.1	ENSMUST00000220867.1	lincRNA	chr12:68340465-68445833
chr12	68532005	68534107	+	L1VL4	LINE	L1	chr12	68532230	68532232	-	ENSMUST00000222659.1,ENSMUSG00000113433.1	Gm47489	ENSMUSG00000113433.1	ENSMUST00000222659.1	lincRNA	chr12:68511818-68532231
chr12	68600969	68601059	+	5S	rRNA	rRNA	chr12	68600969	68600971	+	ENSMUST00000122711.1,ENSMUSG00000084660.1	n-R5s61	ENSMUSG00000084660.1	ENSMUST00000122711.1	rRNA	chr12:68600970-68601087
chr12	68812269	68812445	-	B3	SINE	B2	chr12	68812296	68812298	-	ENSMUST00000223294.1,ENSMUSG00000112933.1	Gm47491	ENSMUSG00000112933.1	ENSMUST00000223294.1	processed_pseudogene	chr12:68811184-68812297
chr12	68970410	68970749	+	ORR1A4	LTR	ERVL-MaLR	chr12	68970569	68970571	+	ENSMUST00000223472.1,ENSMUSG00000113098.1	Gm2912	ENSMUSG00000113098.1	ENSMUST00000223472.1	lincRNA	chr12:68970570-68989377
chr12	69120037	69120614	+	RLTR17	LTR	ERVK	chr12	69120346	69120348	-	ENSMUST00000222118.1,ENSMUSG00000113716.1	Gm47518	ENSMUSG00000113716.1	ENSMUST00000222118.1	lincRNA	chr12:69115014-69120347
chr12	69152273	69152377	-	U6	snRNA	snRNA	chr12	69152376	69152378	-	ENSMUST00000158446.1,ENSMUSG00000089071.1	Gm24499	ENSMUSG00000089071.1	ENSMUST00000158446.1	snRNA	chr12:69152274-69152377
chr12	69159294	69159594	+	7SLRNA	srpRNA	srpRNA	chr12	69159294	69159296	+	ENSMUST00000174924.2,ENSMUSG00000099021.1	Rn7s1	ENSMUSG00000099021.1	ENSMUST00000174924.2	misc_RNA	chr12:69159295-69159594
chr12	69159294	69159594	+	7SLRNA	srpRNA	srpRNA	chr12	69159436	69159438	+	ENSMUST00000196389.1,ENSMUSG00000106279.1	Gm47287	ENSMUSG00000106279.1	ENSMUST00000196389.1	miRNA	chr12:69159437-69159506
chr12	69159294	69159594	+	7SLRNA	srpRNA	srpRNA	chr12	69159517	69159519	+	ENSMUST00000200493.1,ENSMUSG00000105788.1	Gm47295	ENSMUSG00000105788.1	ENSMUST00000200493.1	miRNA	chr12:69159518-69159596
chr12	69184139	69184159	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr12	69184156	69184158	+	ENSMUST00000060579.9,ENSMUSG00000043998.10	Mgat2	ENSMUSG00000043998.10	ENSMUST00000060579.9	protein_coding	chr12:69184157-69186770
chr12	69272830	69273601	-	RMER3D-int	LTR	ERVK	chr12	69273431	69273433	-	ENSMUST00000124326.1,ENSMUSG00000085539.1	Gm15561	ENSMUSG00000085539.1	ENSMUST00000124326.1	antisense	chr12:69267771-69273432
chr12	69323552	69323713	+	B2_Mm2	SINE	B2	chr12	69323651	69323653	-	ENSMUST00000221794.1,ENSMUSG00000020982.9	Nemf	ENSMUSG00000020982.9	ENSMUST00000221794.1	protein_coding	chr12:69311568-69323652
chr12	69354043	69354184	+	B1_Mus2	SINE	Alu	chr12	69354068	69354070	-	ENSMUST00000220959.1,ENSMUSG00000020982.9	Nemf	ENSMUSG00000020982.9	ENSMUST00000220959.1	protein_coding	chr12:69352011-69354069
chr12	69361181	69361481	-	7SLRNA	srpRNA	srpRNA	chr12	69361257	69361259	-	ENSMUST00000196643.1,ENSMUSG00000105145.1	Gm47299	ENSMUSG00000105145.1	ENSMUST00000196643.1	miRNA	chr12:69361179-69361258
chr12	69361181	69361481	-	7SLRNA	srpRNA	srpRNA	chr12	69361480	69361482	-	ENSMUST00000175032.2,ENSMUSG00000099250.1	Rn7s2	ENSMUSG00000099250.1	ENSMUST00000175032.2	misc_RNA	chr12:69361182-69361481
chr12	69361181	69361481	-	7SLRNA	srpRNA	srpRNA	chr12	69361338	69361340	-	ENSMUST00000200291.1,ENSMUSG00000105398.1	Gm47305	ENSMUSG00000105398.1	ENSMUST00000200291.1	miRNA	chr12:69361270-69361339
chr12	69561023	69561535	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	69561336	69561338	-	ENSMUST00000177928.1,ENSMUSG00000095776.1	Gm23018	ENSMUSG00000095776.1	ENSMUST00000177928.1	miRNA	chr12:69561229-69561337
chr12	69586153	69586258	-	U6	snRNA	snRNA	chr12	69586257	69586259	-	ENSMUST00000083985.1,ENSMUSG00000065919.1	Gm24449	ENSMUSG00000065919.1	ENSMUST00000083985.1	snRNA	chr12:69586153-69586258
chr12	69588797	69589267	+	RLTR11A	LTR	ERVK	chr12	69588805	69588807	-	ENSMUST00000182646.1,ENSMUSG00000034801.13	Sos2	ENSMUSG00000034801.13	ENSMUST00000182646.1	protein_coding	chr12:69585375-69588806
chr12	69596822	69596854	+	(A)n	Simple_repeat	Simple_repeat	chr12	69596821	69596823	-	ENSMUST00000182838.1,ENSMUSG00000034801.13	Sos2	ENSMUSG00000034801.13	ENSMUST00000182838.1	protein_coding	chr12:69594406-69596822
chr12	69930903	69931147	+	7SK	RNA	RNA	chr12	69930903	69930905	+	ENSMUST00000083393.1,ENSMUSG00000065327.1	Gm22058	ENSMUSG00000065327.1	ENSMUST00000083393.1	misc_RNA	chr12:69930904-69931213
chr12	69958292	69958430	+	B1_Mur3	SINE	Alu	chr12	69958405	69958407	+	ENSMUST00000220935.1,ENSMUSG00000021066.9	Atl1	ENSMUSG00000021066.9	ENSMUST00000220935.1	protein_coding	chr12:69958406-69963656
chr12	69977846	69978953	+	L1_Mus3	LINE	L1	chr12	69977882	69977884	-	ENSMUST00000220735.1,ENSMUSG00000021067.8	Sav1	ENSMUSG00000021067.8	ENSMUST00000220735.1	protein_coding	chr12:69965048-69977883
chr12	69994789	69994892	-	U6	snRNA	snRNA	chr12	69994891	69994893	-	ENSMUST00000158528.1,ENSMUSG00000089153.1	Gm23579	ENSMUSG00000089153.1	ENSMUST00000158528.1	snRNA	chr12:69994790-69994892
chr12	70478560	70479001	-	L1MC4a	LINE	L1	chr12	70478614	70478616	+	ENSMUST00000222328.1,ENSMUSG00000113944.1	Gm48847	ENSMUSG00000113944.1	ENSMUST00000222328.1	lincRNA	chr12:70478615-70493247
chr12	70673645	70673729	+	U6	snRNA	snRNA	chr12	70673645	70673647	+	ENSMUST00000157443.1,ENSMUSG00000088068.1	Gm47290	ENSMUSG00000088068.1	ENSMUST00000157443.1	snRNA	chr12:70673646-70673746
chr12	70871291	70871689	+	L1MA8	LINE	L1	chr12	70871524	70871526	+	ENSMUST00000220515.1,ENSMUSG00000048285.9	Frmd6	ENSMUSG00000048285.9	ENSMUST00000220515.1	protein_coding	chr12:70871525-70900006
chr12	70935327	70935556	+	7SK	RNA	RNA	chr12	70935327	70935329	+	ENSMUST00000158061.1,ENSMUSG00000088686.1	Gm24857	ENSMUSG00000088686.1	ENSMUST00000158061.1	misc_RNA	chr12:70935328-70935637
chr12	70937877	70937920	+	GC_rich	Low_complexity	Low_complexity	chr12	70937914	70937916	+	ENSMUST00000220582.1,ENSMUSG00000021076.6	Actr10	ENSMUSG00000021076.6	ENSMUST00000220582.1	protein_coding	chr12:70937915-70953031
chr12	70939789	70940001	+	B3	SINE	B2	chr12	70939941	70939943	+	ENSMUST00000223549.1,ENSMUSG00000021076.6	Actr10	ENSMUSG00000021076.6	ENSMUST00000223549.1	protein_coding	chr12:70939942-70953009
chr12	71321460	71321770	+	ORR1D2	LTR	ERVL-MaLR	chr12	71321659	71321661	-	ENSMUST00000132822.1,ENSMUSG00000087109.1	4930474H06Rik	ENSMUSG00000087109.1	ENSMUST00000132822.1	processed_transcript	chr12:71317621-71321660
chr12	71488036	71488380	+	ORR1D2	LTR	ERVL-MaLR	chr12	71488284	71488286	+	ENSMUST00000222756.1,ENSMUSG00000113630.1	4930404H11Rik	ENSMUSG00000113630.1	ENSMUST00000222756.1	lincRNA	chr12:71488285-71556133
chr12	71724651	71724888	+	7SK	RNA	RNA	chr12	71724651	71724653	+	ENSMUST00000122514.1,ENSMUSG00000084463.1	Gm22959	ENSMUSG00000084463.1	ENSMUST00000122514.1	misc_RNA	chr12:71724652-71724954
chr12	72099716	72099949	+	MER58B	DNA	hAT-Charlie	chr12	72099790	72099792	+	ENSMUST00000145752.1,ENSMUSG00000005078.16	Jkamp	ENSMUSG00000005078.16	ENSMUST00000145752.1	protein_coding	chr12:72099791-72100857
chr12	72130004	72130520	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	72130317	72130319	-	ENSMUST00000179978.1,ENSMUSG00000095382.1	Gm24466	ENSMUSG00000095382.1	ENSMUST00000179978.1	miRNA	chr12:72130210-72130318
chr12	72236704	72236739	+	GC_rich	Low_complexity	Low_complexity	chr12	72236723	72236725	-	ENSMUST00000021497.15,ENSMUSG00000021087.18	Rtn1	ENSMUSG00000021087.18	ENSMUST00000021497.15	protein_coding	chr12:72211753-72236724
chr12	72236704	72236739	+	GC_rich	Low_complexity	Low_complexity	chr12	72236723	72236725	-	ENSMUST00000137990.1,ENSMUSG00000021087.18	Rtn1	ENSMUSG00000021087.18	ENSMUST00000137990.1	protein_coding	chr12:72212289-72236724
chr12	72761186	72761218	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr12	72761210	72761212	+	ENSMUST00000021514.9,ENSMUSG00000021096.11	Ppm1a	ENSMUSG00000021096.11	ENSMUST00000021514.9	protein_coding	chr12:72761211-72799819
chr12	72906343	72906488	-	B1_Mus2	SINE	Alu	chr12	72906472	72906474	-	ENSMUST00000132901.7,ENSMUSG00000021098.14	4930447C04Rik	ENSMUSG00000021098.14	ENSMUST00000132901.7	protein_coding	chr12:72892870-72906473
chr12	72950850	72951033	+	B3A	SINE	B2	chr12	72950894	72950896	+	ENSMUST00000195404.1,ENSMUSG00000102197.1	Gm38170	ENSMUSG00000102197.1	ENSMUST00000195404.1	TEC	chr12:72950895-72951710
chr12	73318595	73318815	+	URR1B	DNA	hAT-Charlie	chr12	73318628	73318630	+	ENSMUST00000134247.1,ENSMUSG00000044712.15	Slc38a6	ENSMUSG00000044712.15	ENSMUST00000134247.1	protein_coding	chr12:73318629-73339989
chr12	73344248	73344584	-	ORR1B1	LTR	ERVL-MaLR	chr12	73344366	73344368	+	ENSMUST00000150996.1,ENSMUSG00000044712.15	Slc38a6	ENSMUSG00000044712.15	ENSMUST00000150996.1	protein_coding	chr12:73344367-73351865
chr12	73448222	73448365	-	B1_Mm	SINE	Alu	chr12	73448317	73448319	+	ENSMUST00000221762.1,ENSMUSG00000113582.1	Gm33929	ENSMUSG00000113582.1	ENSMUST00000221762.1	lincRNA	chr12:73448318-73449215
chr12	73584756	73584802	+	G-rich	Low_complexity	Low_complexity	chr12	73584795	73584797	+	ENSMUST00000221153.1,ENSMUSG00000021108.18	Prkch	ENSMUSG00000021108.18	ENSMUST00000221153.1	protein_coding	chr12:73584796-73778176
chr12	73584756	73584802	+	G-rich	Low_complexity	Low_complexity	chr12	73584796	73584798	+	ENSMUST00000021527.14,ENSMUSG00000021108.18	Prkch	ENSMUSG00000021108.18	ENSMUST00000021527.14	protein_coding	chr12:73584797-73778185
chr12	73869426	73869752	-	ORR1A2	LTR	ERVL-MaLR	chr12	73869611	73869613	-	ENSMUST00000222217.1,ENSMUSG00000087700.2	Gm15283	ENSMUSG00000087700.2	ENSMUST00000222217.1	antisense	chr12:73843109-73869612
chr12	73901267	73902053	-	L1MCa	LINE	L1	chr12	73901374	73901376	+	ENSMUST00000110461.7,ENSMUSG00000021109.13	Hif1a	ENSMUSG00000021109.13	ENSMUST00000110461.7	protein_coding	chr12:73901375-73947530
chr12	73997781	73997802	+	GC_rich	Low_complexity	Low_complexity	chr12	73997798	73997800	+	ENSMUST00000221073.1,ENSMUSG00000044912.10	Syt16	ENSMUSG00000044912.10	ENSMUST00000221073.1	protein_coding	chr12:73997799-74155261
chr12	74296643	74296693	+	(T)n	Simple_repeat	Simple_repeat	chr12	74296667	74296669	+	ENSMUST00000221311.1,ENSMUSG00000029878.6	Dbpht2	ENSMUSG00000029878.6	ENSMUST00000221311.1	lincRNA	chr12:74296668-74302008
chr12	74316374	74316406	+	(TG)n	Simple_repeat	Simple_repeat	chr12	74316393	74316395	-	ENSMUST00000110441.1,ENSMUSG00000079061.3	Gm11042	ENSMUSG00000079061.3	ENSMUST00000110441.1	protein_coding	chr12:74315110-74316394
chr12	74842587	74843077	-	RMER5	LTR	ERV1	chr12	74842737	74842739	+	ENSMUST00000221968.1,ENSMUSG00000113974.1	4930442G10Rik	ENSMUSG00000113974.1	ENSMUST00000221968.1	lincRNA	chr12:74842738-74849666
chr12	74842587	74843077	-	RMER5	LTR	ERV1	chr12	74842752	74842754	+	ENSMUST00000221473.1,ENSMUSG00000113974.1	4930442G10Rik	ENSMUSG00000113974.1	ENSMUST00000221473.1	lincRNA	chr12:74842753-74849661
chr12	75508728	75508763	+	(TG)n	Simple_repeat	Simple_repeat	chr12	75508744	75508746	-	ENSMUST00000218033.1,ENSMUSG00000112254.1	Gm47690	ENSMUSG00000112254.1	ENSMUST00000218033.1	TEC	chr12:75505800-75508745
chr12	75735676	75735750	+	GC_rich	Low_complexity	Low_complexity	chr12	75735728	75735730	-	ENSMUST00000021450.5,ENSMUSG00000021054.6	Sgpp1	ENSMUSG00000021054.6	ENSMUST00000021450.5	protein_coding	chr12:75714249-75735729
chr12	75735676	75735750	+	GC_rich	Low_complexity	Low_complexity	chr12	75735695	75735697	-	ENSMUST00000220285.1,ENSMUSG00000021054.6	Sgpp1	ENSMUSG00000021054.6	ENSMUST00000220285.1	protein_coding	chr12:75720326-75735696
chr12	75852644	75852773	+	RLTR31D_MM	LTR	ERVK	chr12	75852729	75852731	+	ENSMUST00000148324.1,ENSMUSG00000063450.14	Syne2	ENSMUSG00000063450.14	ENSMUST00000148324.1	protein_coding	chr12:75852730-75880328
chr12	76229436	76229601	+	B3	SINE	B2	chr12	76229463	76229465	-	ENSMUST00000220068.1,ENSMUSG00000021056.8	Tex21	ENSMUSG00000021056.8	ENSMUST00000220068.1	protein_coding	chr12:76214486-76229464
chr12	76420423	76420490	-	U6	snRNA	snRNA	chr12	76420489	76420491	-	ENSMUST00000104603.1,ENSMUSG00000077791.1	Gm25563	ENSMUSG00000077791.1	ENSMUST00000104603.1	snRNA	chr12:76420417-76420490
chr12	76435084	76435980	-	RMER17B	LTR	ERVK	chr12	76435712	76435714	+	ENSMUST00000219251.1,ENSMUSG00000052221.8	Ppp1r36	ENSMUSG00000052221.8	ENSMUST00000219251.1	protein_coding	chr12:76435713-76436480
chr12	76533517	76533566	+	(TCCC)n	Simple_repeat	Simple_repeat	chr12	76533559	76533561	+	ENSMUST00000218461.1,ENSMUSG00000052609.9	Plekhg3	ENSMUSG00000052609.9	ENSMUST00000218461.1	protein_coding	chr12:76533560-76568057
chr12	76569638	76569791	+	B2_Mm2	SINE	B2	chr12	76569775	76569777	+	ENSMUST00000219426.1,ENSMUSG00000052609.9	Plekhg3	ENSMUSG00000052609.9	ENSMUST00000219426.1	protein_coding	chr12:76569776-76579039
chr12	76584013	76584141	-	B1_Mur3	SINE	Alu	chr12	76584085	76584087	-	ENSMUST00000170532.1,ENSMUSG00000021061.15	Sptb	ENSMUSG00000021061.15	ENSMUST00000170532.1	protein_coding	chr12:76583231-76584086
chr12	76691979	76692191	+	7SK	RNA	RNA	chr12	76691979	76691981	+	ENSMUST00000157731.1,ENSMUSG00000088356.1	Gm24010	ENSMUSG00000088356.1	ENSMUST00000157731.1	misc_RNA	chr12:76691980-76692261
chr12	76800832	76800859	+	(CA)n	Simple_repeat	Simple_repeat	chr12	76800833	76800835	-	ENSMUST00000143863.1,ENSMUSG00000021062.15	Rab15	ENSMUSG00000021062.15	ENSMUST00000143863.1	protein_coding	chr12:76799874-76800834
chr12	76822451	76822477	+	(CTCG)n	Simple_repeat	Simple_repeat	chr12	76822461	76822463	-	ENSMUST00000134124.1,ENSMUSG00000021062.15	Rab15	ENSMUSG00000021062.15	ENSMUST00000134124.1	protein_coding	chr12:76802880-76822462
chr12	76840092	76840506	+	MTC	LTR	ERVL-MaLR	chr12	76840294	76840296	+	ENSMUST00000123887.1,ENSMUSG00000033373.16	Fntb	ENSMUSG00000033373.16	ENSMUST00000123887.1	protein_coding	chr12:76840295-76887805
chr12	76886939	76887156	-	ORR1E	LTR	ERVL-MaLR	chr12	76887057	76887059	+	ENSMUST00000154743.1,ENSMUSG00000033373.16	Fntb	ENSMUSG00000033373.16	ENSMUST00000154743.1	protein_coding	chr12:76887058-76910246
chr12	77116189	77117739	-	Lx5b	LINE	L1	chr12	77116431	77116433	-	ENSMUST00000175373.1,ENSMUSG00000093114.1	Gm22696	ENSMUSG00000093114.1	ENSMUST00000175373.1	miRNA	chr12:77116365-77116432
chr12	77383407	77389676	-	L1Md_T	LINE	L1	chr12	77388863	77388865	+	ENSMUST00000219299.1,ENSMUSG00000021065.16	Fut8	ENSMUSG00000021065.16	ENSMUST00000219299.1	protein_coding	chr12:77388864-77475989
chr12	77393100	77393201	+	U6	snRNA	snRNA	chr12	77393103	77393105	+	ENSMUST00000157377.1,ENSMUSG00000088002.1	Gm24775	ENSMUSG00000088002.1	ENSMUST00000157377.1	snRNA	chr12:77393104-77393202
chr12	77404862	77411301	-	L1Md_T	LINE	L1	chr12	77410140	77410142	+	ENSMUST00000218851.1,ENSMUSG00000021065.16	Fut8	ENSMUSG00000021065.16	ENSMUST00000218851.1	protein_coding	chr12:77410141-77475989
chr12	77418416	77418571	+	U1	snRNA	snRNA	chr12	77418416	77418418	+	ENSMUST00000082899.1,ENSMUSG00000064833.1	Gm25926	ENSMUSG00000064833.1	ENSMUST00000082899.1	snRNA	chr12:77418417-77418576
chr12	77520751	77526929	-	L1Md_F3	LINE	L1	chr12	77526397	77526399	-	ENSMUST00000219567.1,ENSMUSG00000111939.1	Gm48177	ENSMUSG00000111939.1	ENSMUST00000219567.1	processed_pseudogene	chr12:77525282-77526398
chr12	77547125	77553773	-	L1Md_T	LINE	L1	chr12	77553346	77553348	+	ENSMUST00000218335.1,ENSMUSG00000112392.1	Gm35240	ENSMUSG00000112392.1	ENSMUST00000218335.1	lincRNA	chr12:77553347-77569709
chr12	77814809	77814842	+	AT_rich	Low_complexity	Low_complexity	chr12	77814808	77814810	-	ENSMUST00000104519.1,ENSMUSG00000077707.1	Gm24070	ENSMUSG00000077707.1	ENSMUST00000104519.1	snoRNA	chr12:77814680-77814809
chr12	78260383	78261380	+	L1Md_F2	LINE	L1	chr12	78261292	78261294	+	ENSMUST00000217986.1,ENSMUSG00000112637.1	Gm48225	ENSMUSG00000112637.1	ENSMUST00000217986.1	TEC	chr12:78261293-78266375
chr12	78398092	78398229	+	B1_Mus1	SINE	Alu	chr12	78398134	78398136	+	ENSMUST00000218155.1,ENSMUSG00000112090.1	Gm48231	ENSMUSG00000112090.1	ENSMUST00000218155.1	TEC	chr12:78398135-78400540
chr12	78734081	78734251	-	MIRb	SINE	MIR	chr12	78734156	78734158	+	ENSMUST00000219314.1,ENSMUSG00000056987.8	Fam71d	ENSMUSG00000056987.8	ENSMUST00000219314.1	protein_coding	chr12:78734157-78734512
chr12	78752686	78752788	-	U6	snRNA	snRNA	chr12	78752787	78752789	-	ENSMUST00000158197.1,ENSMUSG00000088822.1	Gm25225	ENSMUSG00000088822.1	ENSMUST00000158197.1	snRNA	chr12:78752687-78752788
chr12	78829444	78829559	+	PB1D7	SINE	Alu	chr12	78829474	78829476	+	ENSMUST00000218726.1,ENSMUSG00000021112.9	Mpp5	ENSMUSG00000021112.9	ENSMUST00000218726.1	protein_coding	chr12:78829475-78829898
chr12	78834286	78834472	-	B2_Mm1a	SINE	B2	chr12	78834462	78834464	+	ENSMUST00000219180.1,ENSMUSG00000021112.9	Mpp5	ENSMUSG00000021112.9	ENSMUST00000219180.1	protein_coding	chr12:78834463-78838081
chr12	79103856	79103947	+	ID_B1	SINE	B4	chr12	79103938	79103940	-	ENSMUST00000220031.1,ENSMUSG00000112489.1	9230116L04Rik	ENSMUSG00000112489.1	ENSMUST00000220031.1	lincRNA	chr12:79088705-79103939
chr12	79103856	79103947	+	ID_B1	SINE	B4	chr12	79103934	79103936	-	ENSMUST00000217990.1,ENSMUSG00000112489.1	9230116L04Rik	ENSMUSG00000112489.1	ENSMUST00000217990.1	lincRNA	chr12:79092724-79103935
chr12	79103856	79103947	+	ID_B1	SINE	B4	chr12	79103935	79103937	-	ENSMUST00000219976.1,ENSMUSG00000112489.1	9230116L04Rik	ENSMUSG00000112489.1	ENSMUST00000219976.1	lincRNA	chr12:79092841-79103936
chr12	80081260	80081470	+	B3	SINE	B2	chr12	80081433	80081435	-	ENSMUST00000218323.1,ENSMUSG00000111933.1	Gm36660	ENSMUSG00000111933.1	ENSMUST00000218323.1	lincRNA	chr12:80018415-80081434
chr12	80121100	80121201	-	PB1D10	SINE	Alu	chr12	80121138	80121140	-	ENSMUST00000218078.1,ENSMUSG00000097729.2	2310015A10Rik	ENSMUSG00000097729.2	ENSMUST00000218078.1	processed_transcript	chr12:80120546-80121139
chr12	80171975	80172183	+	B3	SINE	B2	chr12	80172143	80172145	-	ENSMUST00000219634.1,ENSMUSG00000015143.15	Actn1	ENSMUSG00000015143.15	ENSMUST00000219634.1	protein_coding	chr12:80168103-80172144
chr12	80209216	80209301	-	B3	SINE	B2	chr12	80209242	80209244	+	ENSMUST00000218235.1,ENSMUSG00000112852.1	Gm47767	ENSMUSG00000112852.1	ENSMUST00000218235.1	antisense	chr12:80209243-80211916
chr12	80671487	80671630	-	B3A	SINE	B2	chr12	80671544	80671546	+	ENSMUST00000217679.1,ENSMUSG00000048833.9	Slc39a9	ENSMUSG00000048833.9	ENSMUST00000217679.1	protein_coding	chr12:80671545-80674218
chr12	80911476	80911583	+	U6	snRNA	snRNA	chr12	80911476	80911478	+	ENSMUST00000083181.1,ENSMUSG00000065115.1	Gm23298	ENSMUSG00000065115.1	ENSMUST00000083181.1	snRNA	chr12:80911477-80911583
chr12	80945568	80945599	+	(TG)n	Simple_repeat	Simple_repeat	chr12	80945569	80945571	+	ENSMUST00000138434.7,ENSMUSG00000021134.17	Srsf5	ENSMUSG00000021134.17	ENSMUST00000138434.7	protein_coding	chr12:80945570-80947528
chr12	80945568	80945599	+	(TG)n	Simple_repeat	Simple_repeat	chr12	80945578	80945580	+	ENSMUST00000151968.1,ENSMUSG00000021134.17	Srsf5	ENSMUSG00000021134.17	ENSMUST00000151968.1	protein_coding	chr12:80945579-80946970
chr12	80945568	80945599	+	(TG)n	Simple_repeat	Simple_repeat	chr12	80945584	80945586	+	ENSMUST00000110356.2,ENSMUSG00000021134.17	Srsf5	ENSMUSG00000021134.17	ENSMUST00000110356.2	protein_coding	chr12:80945585-80950503
chr12	81511418	81511485	+	(T)n	Simple_repeat	Simple_repeat	chr12	81511429	81511431	-	ENSMUST00000114201.2,ENSMUSG00000090935.10	Synj2bp	ENSMUSG00000090935.10	ENSMUST00000114201.2	protein_coding	chr12:81504121-81511430
chr12	81631151	81631249	+	G-rich	Low_complexity	Low_complexity	chr12	81631248	81631250	+	ENSMUST00000218362.1,ENSMUSG00000042734.6	Ttc9	ENSMUSG00000042734.6	ENSMUST00000218362.1	protein_coding	chr12:81631249-81667557
chr12	81781119	81781205	+	C-rich	Low_complexity	Low_complexity	chr12	81781174	81781176	-	ENSMUST00000035987.8,ENSMUSG00000042724.8	Map3k9	ENSMUSG00000042724.8	ENSMUST00000035987.8	protein_coding	chr12:81721010-81781175
chr12	81827596	81827991	+	MTA_Mm	LTR	ERVL-MaLR	chr12	81827798	81827800	+	ENSMUST00000221799.1,ENSMUSG00000113950.1	Gm47080	ENSMUSG00000113950.1	ENSMUST00000221799.1	lincRNA	chr12:81827799-81853031
chr12	81860330	81860365	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	81860340	81860342	+	ENSMUST00000222005.1,ENSMUSG00000021140.9	Pcnx	ENSMUSG00000021140.9	ENSMUST00000222005.1	protein_coding	chr12:81860341-81997123
chr12	82150467	82150553	+	5S	rRNA	rRNA	chr12	82150467	82150469	+	ENSMUST00000082780.1,ENSMUSG00000064714.1	n-R5s62	ENSMUSG00000064714.1	ENSMUST00000082780.1	rRNA	chr12:82150468-82150563
chr12	82256245	82256621	-	RMER5	LTR	ERV1	chr12	82256584	82256586	+	ENSMUST00000222714.1,ENSMUSG00000042700.16	Sipa1l1	ENSMUSG00000042700.16	ENSMUST00000222714.1	protein_coding	chr12:82256585-82450271
chr12	82938932	82939269	-	MLT1A	LTR	ERVL-MaLR	chr12	82939154	82939156	-	ENSMUST00000187123.1,ENSMUSG00000100890.1	1700085C21Rik	ENSMUSG00000100890.1	ENSMUST00000187123.1	antisense	chr12:82932520-82939155
chr12	83537439	83537586	-	MLT1A	LTR	ERVL-MaLR	chr12	83537466	83537468	+	ENSMUST00000221944.1,ENSMUSG00000021222.9	Dcaf4	ENSMUSG00000021222.9	ENSMUST00000221944.1	protein_coding	chr12:83537467-83539831
chr12	83595651	83595687	+	(A)n	Simple_repeat	Simple_repeat	chr12	83595686	83595688	-	ENSMUST00000223222.1,ENSMUSG00000042628.8	Zfyve1	ENSMUSG00000042628.8	ENSMUST00000223222.1	protein_coding	chr12:83591336-83595687
chr12	83630936	83631434	+	MT2_Mm	LTR	ERVL	chr12	83631235	83631237	+	ENSMUST00000181983.7,ENSMUSG00000010608.15	Rbm25	ENSMUSG00000010608.15	ENSMUST00000181983.7	protein_coding	chr12:83631236-83674417
chr12	83630936	83631434	+	MT2_Mm	LTR	ERVL	chr12	83631338	83631340	+	ENSMUST00000182004.7,ENSMUSG00000010608.15	Rbm25	ENSMUSG00000010608.15	ENSMUST00000182004.7	protein_coding	chr12:83631339-83646232
chr12	83634623	83634770	-	B1_Mus2	SINE	Alu	chr12	83634769	83634771	+	ENSMUST00000182881.1,ENSMUSG00000010608.15	Rbm25	ENSMUSG00000010608.15	ENSMUST00000182881.1	protein_coding	chr12:83634770-83639377
chr12	83658522	83658616	-	PB1D9	SINE	Alu	chr12	83658524	83658526	+	ENSMUST00000183242.1,ENSMUSG00000010608.15	Rbm25	ENSMUSG00000010608.15	ENSMUST00000183242.1	protein_coding	chr12:83658525-83659584
chr12	83731377	83731492	-	PB1	SINE	Alu	chr12	83731456	83731458	-	ENSMUST00000222646.1,ENSMUSG00000114050.1	Gm47666	ENSMUSG00000114050.1	ENSMUST00000222646.1	antisense	chr12:83730062-83731457
chr12	83847960	83848050	+	ORR1A4	LTR	ERVL-MaLR	chr12	83848049	83848051	+	ENSMUST00000221017.1,ENSMUSG00000113141.1	Gm47748	ENSMUSG00000113141.1	ENSMUST00000221017.1	processed_pseudogene	chr12:83848050-83848391
chr12	84012765	84012870	-	B2_Mm2	SINE	B2	chr12	84012863	84012865	+	ENSMUST00000222591.1,ENSMUSG00000072949.6	Acot1	ENSMUSG00000072949.6	ENSMUST00000222591.1	protein_coding	chr12:84012864-84017674
chr12	84216037	84216153	+	MER94B	DNA	hAT-Blackjack	chr12	84216136	84216138	-	ENSMUST00000220851.1,ENSMUSG00000113094.1	Gm47447	ENSMUSG00000113094.1	ENSMUST00000220851.1	sense_intronic	chr12:84214365-84216137
chr12	84338101	84338241	+	ID_B1	SINE	B4	chr12	84338174	84338176	+	ENSMUST00000221867.1,ENSMUSG00000042472.11	Zfp410	ENSMUSG00000042472.11	ENSMUST00000221867.1	protein_coding	chr12:84338175-84340334
chr12	84368348	84368437	-	PB1D10	SINE	Alu	chr12	84368425	84368427	+	ENSMUST00000140961.7,ENSMUSG00000021235.13	Coq6	ENSMUSG00000021235.13	ENSMUST00000140961.7	protein_coding	chr12:84368426-84372243
chr12	84368348	84368437	-	PB1D10	SINE	Alu	chr12	84368425	84368427	+	ENSMUST00000126913.7,ENSMUSG00000021235.13	Coq6	ENSMUSG00000021235.13	ENSMUST00000126913.7	protein_coding	chr12:84368426-84373792
chr12	84408968	84409003	+	GC_rich	Low_complexity	Low_complexity	chr12	84408983	84408985	-	ENSMUST00000136511.1,ENSMUSG00000021236.16	Entpd5	ENSMUSG00000021236.16	ENSMUST00000136511.1	protein_coding	chr12:84403402-84408984
chr12	84457372	84457440	-	ID4	SINE	ID	chr12	84457395	84457397	+	ENSMUST00000221172.1,ENSMUSG00000085793.2	Lin52	ENSMUSG00000085793.2	ENSMUST00000221172.1	protein_coding	chr12:84457396-84529709
chr12	84946724	84947061	-	ORR1A4	LTR	ERVL-MaLR	chr12	84946922	84946924	-	ENSMUST00000169161.7,ENSMUSG00000042350.13	Arel1	ENSMUSG00000042350.13	ENSMUST00000169161.7	protein_coding	chr12:84940161-84946923
chr12	85102225	85102364	-	B3	SINE	B2	chr12	85102346	85102348	-	ENSMUST00000192514.1,ENSMUSG00000102935.1	Gm38355	ENSMUSG00000102935.1	ENSMUST00000192514.1	TEC	chr12:85100778-85102347
chr12	85242959	85243017	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr12	85242977	85242979	-	ENSMUST00000223005.1,ENSMUSG00000021245.15	Mlh3	ENSMUSG00000021245.15	ENSMUST00000223005.1	protein_coding	chr12:85234530-85242978
chr12	85363573	85363718	+	B1_Mus1	SINE	Alu	chr12	85363644	85363646	-	ENSMUST00000222887.1,ENSMUSG00000113752.1	Gm47817	ENSMUSG00000113752.1	ENSMUST00000222887.1	TEC	chr12:85360493-85363645
chr12	85718474	85718595	-	5S	rRNA	rRNA	chr12	85718594	85718596	-	ENSMUST00000102019.1,ENSMUSG00000075973.1	n-R5s64	ENSMUSG00000075973.1	ENSMUST00000102019.1	rRNA	chr12:85718477-85718595
chr12	85718474	85718595	-	5S	rRNA	rRNA	chr12	85718562	85718564	-	ENSMUST00000199436.1,ENSMUSG00000106297.1	Gm47285	ENSMUSG00000106297.1	ENSMUST00000199436.1	miRNA	chr12:85718503-85718563
chr12	85718595	85718700	+	MYSERV-int	LTR	ERVK	chr12	85718594	85718596	-	ENSMUST00000102019.1,ENSMUSG00000075973.1	n-R5s64	ENSMUSG00000075973.1	ENSMUST00000102019.1	rRNA	chr12:85718477-85718595
chr12	85961880	85962191	+	L1MB2	LINE	L1	chr12	85962000	85962002	+	ENSMUST00000220906.1,ENSMUSG00000012609.19	Ttll5	ENSMUSG00000012609.19	ENSMUST00000220906.1	protein_coding	chr12:85962001-86053522
chr12	86068851	86069209	+	L2a	LINE	L2	chr12	86069172	86069174	+	ENSMUST00000192206.1,ENSMUSG00000103301.1	Gm37804	ENSMUSG00000103301.1	ENSMUST00000192206.1	TEC	chr12:86069173-86069779
chr12	86504367	86504554	+	ID_B1	SINE	B4	chr12	86504408	86504410	+	ENSMUST00000136464.2,ENSMUSG00000021255.17	Esrrb	ENSMUSG00000021255.17	ENSMUST00000136464.2	protein_coding	chr12:86504409-86509967
chr12	86655124	86655229	+	U6	snRNA	snRNA	chr12	86655124	86655126	+	ENSMUST00000101884.1,ENSMUSG00000075832.1	Gm22004	ENSMUSG00000075832.1	ENSMUST00000101884.1	snRNA	chr12:86655125-86655231
chr12	86678692	86678713	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr12	86678699	86678701	+	ENSMUST00000021681.3,ENSMUSG00000021256.5	Vash1	ENSMUSG00000021256.5	ENSMUST00000021681.3	protein_coding	chr12:86678700-86692091
chr12	86705821	86706198	-	MTD	LTR	ERVL-MaLR	chr12	86706168	86706170	-	ENSMUST00000167813.7,ENSMUSG00000021257.14	Angel1	ENSMUSG00000021257.14	ENSMUST00000167813.7	protein_coding	chr12:86702195-86706169
chr12	86705821	86706198	-	MTD	LTR	ERVL-MaLR	chr12	86705963	86705965	-	ENSMUST00000167272.7,ENSMUSG00000021257.14	Angel1	ENSMUSG00000021257.14	ENSMUST00000167272.7	protein_coding	chr12:86702355-86705964
chr12	86716637	86716813	+	B3A	SINE	B2	chr12	86716641	86716643	-	ENSMUST00000165332.7,ENSMUSG00000021257.14	Angel1	ENSMUSG00000021257.14	ENSMUST00000165332.7	protein_coding	chr12:86702313-86716642
chr12	86809804	86809968	+	B3	SINE	B2	chr12	86809956	86809958	+	ENSMUST00000157778.1,ENSMUSG00000088403.1	Gm25888	ENSMUSG00000088403.1	ENSMUST00000157778.1	misc_RNA	chr12:86809957-86810258
chr12	87034744	87034795	-	B3A	SINE	B2	chr12	87034765	87034767	+	ENSMUST00000116793.1,ENSMUSG00000080443.1	Gm25847	ENSMUSG00000080443.1	ENSMUST00000116793.1	miRNA	chr12:87034766-87034861
chr12	87153866	87154756	-	MMERVK10C-int	LTR	ERVK	chr12	87153883	87153885	+	ENSMUST00000220468.1,ENSMUSG00000021033.11	Gstz1	ENSMUSG00000021033.11	ENSMUST00000220468.1	protein_coding	chr12:87153884-87156918
chr12	87155402	87155711	-	RLTR27	LTR	ERVK	chr12	87155485	87155487	-	ENSMUST00000221468.1,ENSMUSG00000113918.1	Gm6566	ENSMUSG00000113918.1	ENSMUST00000221468.1	antisense	chr12:87149475-87155486
chr12	87269260	87269466	-	Tigger9b	DNA	TcMar-Tigger	chr12	87269301	87269303	+	ENSMUST00000223239.1,ENSMUSG00000021037.7	Ahsa1	ENSMUSG00000021037.7	ENSMUST00000223239.1	protein_coding	chr12:87269302-87273998
chr12	87429395	87429509	-	RSINE1	SINE	B4	chr12	87429436	87429438	-	ENSMUST00000176758.2,ENSMUSG00000079036.10	Alkbh1	ENSMUSG00000079036.10	ENSMUST00000176758.2	protein_coding	chr12:87425840-87429437
chr12	87441621	87441733	-	PB1D9	SINE	Alu	chr12	87441725	87441727	-	ENSMUST00000160919.7,ENSMUSG00000079036.10	Alkbh1	ENSMUSG00000079036.10	ENSMUST00000160919.7	protein_coding	chr12:87431430-87441726
chr12	87514185	87514340	+	ORR1B1	LTR	ERVL-MaLR	chr12	87514315	87514317	+	ENSMUST00000110152.2,ENSMUSG00000079034.2	Gm8300	ENSMUSG00000079034.2	ENSMUST00000110152.2	protein_coding	chr12:87514316-87518266
chr12	87543231	87543279	+	PB1D10	SINE	Alu	chr12	87543250	87543252	-	ENSMUST00000222919.1,ENSMUSG00000113803.1	Gm18615	ENSMUSG00000113803.1	ENSMUST00000222919.1	processed_pseudogene	chr12:87541202-87543251
chr12	87618737	87618892	+	ORR1B1	LTR	ERVL-MaLR	chr12	87618868	87618870	+	ENSMUST00000164838.2,ENSMUSG00000092019.4	Gm4027	ENSMUSG00000092019.4	ENSMUST00000164838.2	protein_coding	chr12:87618869-87622955
chr12	87775714	87775890	-	ORR1A2	LTR	ERVL-MaLR	chr12	87775754	87775756	-	ENSMUST00000164517.2,ENSMUSG00000095724.1	Gm21319	ENSMUSG00000095724.1	ENSMUST00000164517.2	protein_coding	chr12:87772425-87775755
chr12	87816446	87816601	+	ORR1B1	LTR	ERVL-MaLR	chr12	87816576	87816578	+	ENSMUST00000110149.1,ENSMUSG00000079031.1	BB287469	ENSMUSG00000079031.1	ENSMUST00000110149.1	protein_coding	chr12:87816577-87820676
chr12	87873938	87874097	+	ORR1B1	LTR	ERVL-MaLR	chr12	87874071	87874073	+	ENSMUST00000110147.2,ENSMUSG00000072905.5	Gm2016	ENSMUSG00000072905.5	ENSMUST00000110147.2	protein_coding	chr12:87874072-87877859
chr12	87954081	87954180	-	ORR1A2	LTR	ERVL-MaLR	chr12	87954131	87954133	+	ENSMUST00000180707.7,ENSMUSG00000096276.9	Gm2042	ENSMUSG00000096276.9	ENSMUST00000180707.7	protein_coding	chr12:87954132-87958643
chr12	87954203	87954290	-	B1_Mur4	SINE	Alu	chr12	87954213	87954215	+	ENSMUST00000181347.1,ENSMUSG00000096276.9	Gm2042	ENSMUSG00000096276.9	ENSMUST00000181347.1	protein_coding	chr12:87954214-87959202
chr12	87985586	87985696	-	RMER2	LTR	ERV1	chr12	87985618	87985620	+	ENSMUST00000223310.1,ENSMUSG00000113854.1	Gm2099	ENSMUSG00000113854.1	ENSMUST00000223310.1	transcribed_processed_pseudogene	chr12:87985619-87988959
chr12	88182036	88182118	+	B1_Mus1	SINE	Alu	chr12	88182107	88182109	-	ENSMUST00000220521.1,ENSMUSG00000066027.7	Gm10436	ENSMUSG00000066027.7	ENSMUST00000220521.1	protein_coding	chr12:88175597-88182108
chr12	88274474	88274648	-	MTE2a	LTR	ERVL-MaLR	chr12	88274499	88274501	-	ENSMUST00000101168.3,ENSMUSG00000079029.2	Gm5662	ENSMUSG00000079029.2	ENSMUST00000101168.3	protein_coding	chr12:88270640-88274500
chr12	88324005	88324160	-	ORR1B1	LTR	ERVL-MaLR	chr12	88324025	88324027	-	ENSMUST00000218054.2,ENSMUSG00000093847.2	Gm5039	ENSMUSG00000093847.2	ENSMUST00000218054.2	protein_coding	chr12:88320122-88324026
chr12	88590312	88590478	-	L1M5	LINE	L1	chr12	88590436	88590438	-	ENSMUST00000221843.1,ENSMUSG00000113213.1	Gm19540	ENSMUSG00000113213.1	ENSMUST00000221843.1	processed_pseudogene	chr12:88588616-88590437
chr12	88631086	88631470	+	MTD	LTR	ERVL-MaLR	chr12	88631355	88631357	+	ENSMUST00000220698.1,ENSMUSG00000114001.1	Gm48664	ENSMUSG00000114001.1	ENSMUST00000220698.1	lincRNA	chr12:88631356-88706819
chr12	88631828	88631982	-	MER5B	DNA	hAT-Charlie	chr12	88631877	88631879	-	ENSMUST00000222755.1,ENSMUSG00000113538.1	Gm48665	ENSMUSG00000113538.1	ENSMUST00000222755.1	lincRNA	chr12:88629764-88631878
chr12	89431327	89431401	+	(TATG)n	Simple_repeat	Simple_repeat	chr12	89431335	89431337	+	ENSMUST00000117030.1,ENSMUSG00000080680.1	Gm23989	ENSMUSG00000080680.1	ENSMUST00000117030.1	miRNA	chr12:89431336-89431401
chr12	90358975	90365192	-	L1Md_F2	LINE	L1	chr12	90364251	90364253	+	ENSMUST00000222858.1,ENSMUSG00000113884.1	Gm2270	ENSMUSG00000113884.1	ENSMUST00000222858.1	lincRNA	chr12:90364252-90367678
chr12	90398633	90398732	-	L1M4c	LINE	L1	chr12	90398661	90398663	-	ENSMUST00000221123.1,ENSMUSG00000113539.1	Gm47684	ENSMUSG00000113539.1	ENSMUST00000221123.1	lincRNA	chr12:90393903-90398662
chr12	90744860	90745041	-	LFSINE_Vert	SINE	tRNA	chr12	90744904	90744906	+	ENSMUST00000220857.1,ENSMUSG00000097157.2	Gm26512	ENSMUSG00000097157.2	ENSMUST00000220857.1	bidirectional_promoter_lncRNA	chr12:90744905-90747635
chr12	90969494	90970459	+	RMER1C	Other	Other	chr12	90969767	90969769	-	ENSMUST00000181184.1,ENSMUSG00000097071.2	4930544I03Rik	ENSMUSG00000097071.2	ENSMUST00000181184.1	lincRNA	chr12:90753208-90969768
chr12	90969494	90970459	+	RMER1C	Other	Other	chr12	90969797	90969799	-	ENSMUST00000220451.1,ENSMUSG00000097071.2	4930544I03Rik	ENSMUSG00000097071.2	ENSMUST00000220451.1	lincRNA	chr12:90956537-90969798
chr12	90969494	90970459	+	RMER1C	Other	Other	chr12	90969948	90969950	+	ENSMUST00000222238.1,ENSMUSG00000113747.1	1700105G05Rik	ENSMUSG00000113747.1	ENSMUST00000222238.1	lincRNA	chr12:90969949-90971518
chr12	90981225	90981461	+	7SK	RNA	RNA	chr12	90981224	90981226	+	ENSMUST00000122617.1,ENSMUSG00000084566.1	Gm26477	ENSMUSG00000084566.1	ENSMUST00000122617.1	misc_RNA	chr12:90981225-90981547
chr12	91045727	91046054	+	ORR1A2	LTR	ERVL-MaLR	chr12	91045847	91045849	+	ENSMUST00000221524.1,ENSMUSG00000085004.2	5430427M07Rik	ENSMUSG00000085004.2	ENSMUST00000221524.1	antisense	chr12:91045848-91056636
chr12	91589600	91589654	+	(A)n	Simple_repeat	Simple_repeat	chr12	91589638	91589640	-	ENSMUST00000163693.1,ENSMUSG00000020962.14	Gtf2a1	ENSMUSG00000020962.14	ENSMUST00000163693.1	protein_coding	chr12:91586625-91589639
chr12	91617550	91617848	-	MTC	LTR	ERVL-MaLR	chr12	91617676	91617678	-	ENSMUST00000222304.1,ENSMUSG00000113943.1	Gm47804	ENSMUSG00000113943.1	ENSMUST00000222304.1	lincRNA	chr12:91615896-91617677
chr12	91771016	91771942	+	RMER17B	LTR	ERVK	chr12	91771169	91771171	-	ENSMUST00000170984.1,ENSMUSG00000020961.15	Ston2	ENSMUSG00000020961.15	ENSMUST00000170984.1	protein_coding	chr12:91735054-91771170
chr12	91788005	91788520	-	MT2A	LTR	ERVL	chr12	91788386	91788388	-	ENSMUST00000166008.1,ENSMUSG00000020961.15	Ston2	ENSMUSG00000020961.15	ENSMUST00000166008.1	protein_coding	chr12:91785801-91788387
chr12	91791612	91791679	+	(CATA)n	Simple_repeat	Simple_repeat	chr12	91791673	91791675	-	ENSMUST00000103908.1,ENSMUSG00000077096.1	Gm22015	ENSMUSG00000077096.1	ENSMUST00000103908.1	miRNA	chr12:91791610-91791674
chr12	92473954	92474179	+	ORR1F	LTR	ERVL-MaLR	chr12	92473960	92473962	-	ENSMUST00000223493.1,ENSMUSG00000113499.1	Gm18500	ENSMUSG00000113499.1	ENSMUST00000223493.1	processed_pseudogene	chr12:92473142-92473961
chr12	92998148	92998242	-	RMER1B	Other	Other	chr12	92998150	92998152	-	ENSMUST00000223384.1,ENSMUSG00000113194.1	Gm47998	ENSMUSG00000113194.1	ENSMUST00000223384.1	processed_pseudogene	chr12:92997765-92998151
chr12	93715948	93716420	-	Lx3B	LINE	L1	chr12	93716419	93716421	+	ENSMUST00000221024.1,ENSMUSG00000112982.1	Gm21007	ENSMUSG00000112982.1	ENSMUST00000221024.1	processed_pseudogene	chr12:93716420-93716745
chr12	93746501	93746663	+	U1	snRNA	snRNA	chr12	93746501	93746503	+	ENSMUST00000083369.1,ENSMUSG00000065303.1	Gm23249	ENSMUSG00000065303.1	ENSMUST00000083369.1	snRNA	chr12:93746502-93746662
chr12	95378844	95378951	-	U6	snRNA	snRNA	chr12	95378950	95378952	-	ENSMUST00000083038.1,ENSMUSG00000064972.1	Gm26055	ENSMUSG00000064972.1	ENSMUST00000083038.1	snRNA	chr12:95378845-95378951
chr12	95619817	95619924	+	U6	snRNA	snRNA	chr12	95619817	95619819	+	ENSMUST00000082478.1,ENSMUSG00000064412.1	Gm22246	ENSMUSG00000064412.1	ENSMUST00000082478.1	snRNA	chr12:95619818-95619924
chr12	96256202	96256867	+	Lx3_Mus	LINE	L1	chr12	96256236	96256238	-	ENSMUST00000122619.1,ENSMUSG00000084568.1	Gm26480	ENSMUSG00000084568.1	ENSMUST00000122619.1	misc_RNA	chr12:96255941-96256237
chr12	96661875	96662412	-	Lx5	LINE	L1	chr12	96662313	96662315	+	ENSMUST00000218365.1,ENSMUSG00000112040.1	Gm47396	ENSMUSG00000112040.1	ENSMUST00000218365.1	lincRNA	chr12:96662314-96663247
chr12	97102409	97102685	+	B4A	SINE	B4	chr12	97102463	97102465	-	ENSMUST00000217786.1,ENSMUSG00000112635.1	Gm47397	ENSMUSG00000112635.1	ENSMUST00000217786.1	lincRNA	chr12:97098706-97102464
chr12	97740098	97740246	+	Lx8b	LINE	L1	chr12	97740243	97740245	-	ENSMUST00000217709.1,ENSMUSG00000112524.1	Gm35274	ENSMUSG00000112524.1	ENSMUST00000217709.1	lincRNA	chr12:97735441-97740244
chr12	98236894	98237071	+	MTC	LTR	ERVL-MaLR	chr12	98237007	98237009	-	ENSMUST00000222379.1,ENSMUSG00000021003.10	Galc	ENSMUSG00000021003.10	ENSMUST00000222379.1	protein_coding	chr12:98233238-98237008
chr12	98276919	98277582	-	L1_Mus1	LINE	L1	chr12	98277516	98277518	+	ENSMUST00000219320.1,ENSMUSG00000112895.1	Gm47567	ENSMUSG00000112895.1	ENSMUST00000219320.1	TEC	chr12:98277517-98281040
chr12	98652476	98653737	-	L1_Mur2	LINE	L1	chr12	98652480	98652482	-	ENSMUST00000221845.1,ENSMUSG00000112990.1	Gm47372	ENSMUSG00000112990.1	ENSMUST00000221845.1	TEC	chr12:98648938-98652481
chr12	98746978	98747030	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	98746982	98746984	+	ENSMUST00000057000.16,ENSMUSG00000021012.16	Zc3h14	ENSMUSG00000021012.16	ENSMUST00000057000.16	protein_coding	chr12:98746983-98787747
chr12	98746978	98747030	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	98746988	98746990	+	ENSMUST00000110105.9,ENSMUSG00000021012.16	Zc3h14	ENSMUSG00000021012.16	ENSMUST00000110105.9	protein_coding	chr12:98746989-98787753
chr12	98746978	98747030	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	98746999	98747001	+	ENSMUST00000221558.1,ENSMUSG00000021012.16	Zc3h14	ENSMUSG00000021012.16	ENSMUST00000221558.1	protein_coding	chr12:98747000-98750077
chr12	98746978	98747030	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	98747006	98747008	+	ENSMUST00000223083.1,ENSMUSG00000021012.16	Zc3h14	ENSMUSG00000021012.16	ENSMUST00000223083.1	protein_coding	chr12:98747007-98758567
chr12	98766099	98766254	-	B1_Mur2	SINE	Alu	chr12	98766104	98766106	+	ENSMUST00000220865.1,ENSMUSG00000113196.1	D230049E03Rik	ENSMUSG00000113196.1	ENSMUST00000220865.1	TEC	chr12:98766105-98770355
chr12	98813073	98813471	-	L1VL2	LINE	L1	chr12	98813198	98813200	-	ENSMUST00000222872.1,ENSMUSG00000113020.1	Gm48063	ENSMUSG00000113020.1	ENSMUST00000222872.1	TEC	chr12:98810683-98813199
chr12	98974434	98974559	+	L2a	LINE	L2	chr12	98974468	98974470	+	ENSMUST00000168255.7,ENSMUSG00000021013.16	Ttc8	ENSMUSG00000021013.16	ENSMUST00000168255.7	protein_coding	chr12:98974469-98982562
chr12	98974434	98974559	+	L2a	LINE	L2	chr12	98974497	98974499	+	ENSMUST00000139298.1,ENSMUSG00000021013.16	Ttc8	ENSMUSG00000021013.16	ENSMUST00000139298.1	protein_coding	chr12:98974498-98979885
chr12	99362028	99362074	+	C-rich	Low_complexity	Low_complexity	chr12	99362027	99362029	-	ENSMUST00000221888.1,ENSMUSG00000113106.1	Gm47139	ENSMUSG00000113106.1	ENSMUST00000221888.1	TEC	chr12:99359871-99362028
chr12	99563535	99563565	+	GC_rich	Low_complexity	Low_complexity	chr12	99563535	99563537	-	ENSMUST00000223484.1,ENSMUSG00000033713.12	Foxn3	ENSMUSG00000033713.12	ENSMUST00000223484.1	protein_coding	chr12:99388899-99563536
chr12	99641902	99642009	-	Lx9	LINE	L1	chr12	99641923	99641925	-	ENSMUST00000221736.1,ENSMUSG00000113012.1	Gm47196	ENSMUSG00000113012.1	ENSMUST00000221736.1	TEC	chr12:99639716-99641924
chr12	99642803	99643202	+	RLTR50A	LTR	ERVK	chr12	99643092	99643094	+	ENSMUST00000222616.1,ENSMUSG00000113136.1	Gm19951	ENSMUSG00000113136.1	ENSMUST00000222616.1	lincRNA	chr12:99643093-99647221
chr12	99884494	99884541	+	GC_rich	Low_complexity	Low_complexity	chr12	99884516	99884518	+	ENSMUST00000151019.7,ENSMUSG00000021177.16	Tdp1	ENSMUSG00000021177.16	ENSMUST00000151019.7	protein_coding	chr12:99884517-99937362
chr12	99884494	99884541	+	GC_rich	Low_complexity	Low_complexity	chr12	99884533	99884535	+	ENSMUST00000125639.1,ENSMUSG00000021177.16	Tdp1	ENSMUSG00000021177.16	ENSMUST00000125639.1	protein_coding	chr12:99884534-99887687
chr12	99884494	99884541	+	GC_rich	Low_complexity	Low_complexity	chr12	99884536	99884538	+	ENSMUST00000153627.7,ENSMUSG00000021177.16	Tdp1	ENSMUSG00000021177.16	ENSMUST00000153627.7	protein_coding	chr12:99884537-99955219
chr12	99982772	99982890	+	B1_Mur4	SINE	Alu	chr12	99982851	99982853	-	ENSMUST00000175611.1,ENSMUSG00000093352.1	Gm23291	ENSMUSG00000093352.1	ENSMUST00000175611.1	miRNA	chr12:99982775-99982852
chr12	100464739	100465231	+	MT2_Mm	LTR	ERVL	chr12	100465038	100465040	+	ENSMUST00000222411.1,ENSMUSG00000113895.1	Gm48383	ENSMUSG00000113895.1	ENSMUST00000222411.1	antisense	chr12:100465039-100478150
chr12	100464739	100465231	+	MT2_Mm	LTR	ERVL	chr12	100465050	100465052	+	ENSMUST00000221602.1,ENSMUSG00000113895.1	Gm48383	ENSMUSG00000113895.1	ENSMUST00000221602.1	antisense	chr12:100465051-100488390
chr12	100464739	100465231	+	MT2_Mm	LTR	ERVL	chr12	100465091	100465093	+	ENSMUST00000221566.1,ENSMUSG00000113895.1	Gm48383	ENSMUSG00000113895.1	ENSMUST00000221566.1	antisense	chr12:100465092-100467845
chr12	100520691	100520930	+	GC_rich	Low_complexity	Low_complexity	chr12	100520825	100520827	-	ENSMUST00000062957.7,ENSMUSG00000033530.8	Ttc7b	ENSMUSG00000033530.8	ENSMUST00000062957.7	protein_coding	chr12:100300770-100520826
chr12	100520691	100520930	+	GC_rich	Low_complexity	Low_complexity	chr12	100520690	100520692	-	ENSMUST00000223020.1,ENSMUSG00000033530.8	Ttc7b	ENSMUSG00000033530.8	ENSMUST00000223020.1	protein_coding	chr12:100300825-100520691
chr12	100520691	100520930	+	GC_rich	Low_complexity	Low_complexity	chr12	100520791	100520793	-	ENSMUST00000223444.1,ENSMUSG00000033530.8	Ttc7b	ENSMUSG00000033530.8	ENSMUST00000223444.1	protein_coding	chr12:100396572-100520792
chr12	100520691	100520930	+	GC_rich	Low_complexity	Low_complexity	chr12	100520821	100520823	-	ENSMUST00000220614.1,ENSMUSG00000033530.8	Ttc7b	ENSMUSG00000033530.8	ENSMUST00000220614.1	protein_coding	chr12:100499794-100520822
chr12	100560476	100560933	-	L1Md_F2	LINE	L1	chr12	100560528	100560530	-	ENSMUST00000221323.1,ENSMUSG00000021180.9	Rps6ka5	ENSMUSG00000021180.9	ENSMUST00000221323.1	protein_coding	chr12:100549892-100560529
chr12	100623605	100624476	-	L1M4	LINE	L1	chr12	100623732	100623734	-	ENSMUST00000222512.1,ENSMUSG00000113195.1	Gm48586	ENSMUSG00000113195.1	ENSMUST00000222512.1	TEC	chr12:100621676-100623733
chr12	100626679	100626822	-	L1M4b	LINE	L1	chr12	100626792	100626794	-	ENSMUST00000221653.1,ENSMUSG00000113250.1	Gm48585	ENSMUSG00000113250.1	ENSMUST00000221653.1	TEC	chr12:100624785-100626793
chr12	100712853	100713345	+	MLT1E2	LTR	ERVL-MaLR	chr12	100713079	100713081	-	ENSMUST00000221246.1,ENSMUSG00000021180.9	Rps6ka5	ENSMUSG00000021180.9	ENSMUST00000221246.1	protein_coding	chr12:100551013-100713080
chr12	100726820	100727090	-	MTEa	LTR	ERVL-MaLR	chr12	100726982	100726984	-	ENSMUST00000222403.1,ENSMUSG00000021180.9	Rps6ka5	ENSMUSG00000021180.9	ENSMUST00000222403.1	protein_coding	chr12:100594384-100726983
chr12	100726820	100727090	-	MTEa	LTR	ERVL-MaLR	chr12	100726943	100726945	-	ENSMUST00000222347.1,ENSMUSG00000021180.9	Rps6ka5	ENSMUSG00000021180.9	ENSMUST00000222347.1	protein_coding	chr12:100597970-100726944
chr12	100769022	100769128	-	U6	snRNA	snRNA	chr12	100769127	100769129	-	ENSMUST00000082638.1,ENSMUSG00000064572.1	Gm25801	ENSMUSG00000064572.1	ENSMUST00000082638.1	snRNA	chr12:100769023-100769128
chr12	100862767	100862887	-	B1F2	SINE	Alu	chr12	100862785	100862787	+	ENSMUST00000221802.1,ENSMUSG00000113159.1	Gm48771	ENSMUSG00000113159.1	ENSMUST00000221802.1	TEC	chr12:100862786-100864689
chr12	100922877	100922941	+	MER90a	LTR	ERV1	chr12	100922886	100922888	-	ENSMUST00000222204.1,ENSMUSG00000021182.16	Ccdc88c	ENSMUSG00000021182.16	ENSMUST00000222204.1	protein_coding	chr12:100920255-100922887
chr12	100992865	100993047	+	ORR1G	LTR	ERVL-MaLR	chr12	100992971	100992973	+	ENSMUST00000222768.1,ENSMUSG00000113634.1	Gm36756	ENSMUSG00000113634.1	ENSMUST00000222768.1	antisense	chr12:100992972-101001104
chr12	101116731	101118357	+	Lx2	LINE	L1	chr12	101117213	101117215	-	ENSMUST00000221636.1,ENSMUSG00000113817.1	Gm21056	ENSMUSG00000113817.1	ENSMUST00000221636.1	transcribed_unprocessed_pseudogene	chr12:101101677-101117214
chr12	101116731	101118357	+	Lx2	LINE	L1	chr12	101117110	101117112	-	ENSMUST00000223452.1,ENSMUSG00000113817.1	Gm21056	ENSMUSG00000113817.1	ENSMUST00000223452.1	transcribed_unprocessed_pseudogene	chr12:101104848-101117111
chr12	101215899	101217252	-	L1VL4	LINE	L1	chr12	101216839	101216841	+	ENSMUST00000222371.1,ENSMUSG00000113134.1	Gm18795	ENSMUSG00000113134.1	ENSMUST00000222371.1	transcribed_unprocessed_pseudogene	chr12:101216840-101373116
chr12	101223591	101223698	-	U6	snRNA	snRNA	chr12	101223697	101223699	-	ENSMUST00000082490.1,ENSMUSG00000064424.1	Gm22749	ENSMUSG00000064424.1	ENSMUST00000082490.1	snRNA	chr12:101223592-101223698
chr12	101512362	101518074	-	L1_Mus3	LINE	L1	chr12	101515124	101515126	+	ENSMUST00000220820.1,ENSMUSG00000047014.7	Catsperb	ENSMUSG00000047014.7	ENSMUST00000220820.1	protein_coding	chr12:101515125-101550993
chr12	101553876	101554393	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	101554078	101554080	+	ENSMUST00000103870.1,ENSMUSG00000077058.1	Gm24542	ENSMUSG00000077058.1	ENSMUST00000103870.1	miRNA	chr12:101554079-101554188
chr12	101711429	101713127	+	L1Md_F2	LINE	L1	chr12	101711572	101711574	-	ENSMUST00000160830.1,ENSMUSG00000021187.14	Tc2n	ENSMUSG00000021187.14	ENSMUST00000160830.1	protein_coding	chr12:101649080-101711573
chr12	101711429	101713127	+	L1Md_F2	LINE	L1	chr12	101711904	101711906	-	ENSMUST00000110047.8,ENSMUSG00000021187.14	Tc2n	ENSMUSG00000021187.14	ENSMUST00000110047.8	protein_coding	chr12:101646565-101711905
chr12	102253473	102253687	-	U3	snRNA	snRNA	chr12	102253686	102253688	-	ENSMUST00000200458.1,ENSMUSG00000105037.1	Gm25203	ENSMUSG00000105037.1	ENSMUST00000200458.1	snoRNA	chr12:102253472-102253687
chr12	102253473	102253687	-	U3	snRNA	snRNA	chr12	102253686	102253688	-	ENSMUST00000082842.2,ENSMUSG00000064776.2	Gm25203	ENSMUSG00000064776.2	ENSMUST00000082842.2	snoRNA	chr12:102253473-102253687
chr12	102406082	102412775	-	L1Md_T	LINE	L1	chr12	102406145	102406147	-	ENSMUST00000146499.1,ENSMUSG00000021190.14	Lgmn	ENSMUSG00000021190.14	ENSMUST00000146499.1	protein_coding	chr12:102400102-102406146
chr12	102446948	102447483	+	IAPLTR2a2_Mm	LTR	ERVK	chr12	102447327	102447329	+	ENSMUST00000222873.1,ENSMUSG00000113265.1	Gm30198	ENSMUSG00000113265.1	ENSMUST00000222873.1	lincRNA	chr12:102447328-102467609
chr12	102554966	102555022	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	102554968	102554970	+	ENSMUST00000021610.6,ENSMUSG00000021194.6	Chga	ENSMUSG00000021194.6	ENSMUST00000021610.6	protein_coding	chr12:102554969-102565028
chr12	102554966	102555022	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	102554985	102554987	+	ENSMUST00000220839.1,ENSMUSG00000021194.6	Chga	ENSMUSG00000021194.6	ENSMUST00000220839.1	protein_coding	chr12:102554986-102556406
chr12	102590927	102591491	+	Lx8	LINE	L1	chr12	102591409	102591411	-	ENSMUST00000192133.1,ENSMUSG00000102953.1	Gm37019	ENSMUSG00000102953.1	ENSMUST00000192133.1	TEC	chr12:102589277-102591410
chr12	102727326	102727704	-	MTE2a	LTR	ERVL-MaLR	chr12	102727332	102727334	-	ENSMUST00000178129.1,ENSMUSG00000096751.3	Gm28373	ENSMUSG00000096751.3	ENSMUST00000178129.1	processed_transcript	chr12:102673017-102727333
chr12	102878250	102878292	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	102878277	102878279	-	ENSMUST00000045652.7,ENSMUSG00000041702.7	Btbd7	ENSMUSG00000041702.7	ENSMUST00000045652.7	protein_coding	chr12:102784638-102878278
chr12	102878250	102878292	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	102878268	102878270	-	ENSMUST00000221914.1,ENSMUSG00000041702.7	Btbd7	ENSMUSG00000041702.7	ENSMUST00000221914.1	protein_coding	chr12:102877678-102878269
chr12	102987776	102988159	-	MLT1B	LTR	ERVL-MaLR	chr12	102987828	102987830	+	ENSMUST00000198517.1,ENSMUSG00000105998.1	Gm44324	ENSMUSG00000105998.1	ENSMUST00000198517.1	miRNA	chr12:102987829-102987963
chr12	103128189	103128326	-	LFSINE_Vert	SINE	tRNA	chr12	103128188	103128190	+	ENSMUST00000183635.1,ENSMUSG00000098628.1	Gm27976	ENSMUSG00000098628.1	ENSMUST00000183635.1	misc_RNA	chr12:103128189-103128350
chr12	103310857	103311022	-	MER117	DNA	hAT-Charlie	chr12	103310974	103310976	+	ENSMUST00000191218.6,ENSMUSG00000096753.7	Fam181a	ENSMUSG00000096753.7	ENSMUST00000191218.6	protein_coding	chr12:103310975-103317065
chr12	103392288	103392940	-	MLT1A1-int	LTR	ERVL-MaLR	chr12	103392653	103392655	+	ENSMUST00000179684.2,ENSMUSG00000021203.15	Otub2	ENSMUSG00000021203.15	ENSMUST00000179684.2	protein_coding	chr12:103392654-103406350
chr12	103415569	103415596	+	(CAAAAA)n	Simple_repeat	Simple_repeat	chr12	103415595	103415597	-	ENSMUST00000221358.1,ENSMUSG00000113328.1	Gm47260	ENSMUSG00000113328.1	ENSMUST00000221358.1	TEC	chr12:103412492-103415596
chr12	103532543	103532599	+	GC_rich	Low_complexity	Low_complexity	chr12	103532569	103532571	+	ENSMUST00000189871.6,ENSMUSG00000021209.12	Ppp4r4	ENSMUSG00000021209.12	ENSMUST00000189871.6	protein_coding	chr12:103532570-103612904
chr12	103740369	103740675	+	L1M2	LINE	L1	chr12	103740514	103740516	-	ENSMUST00000186166.6,ENSMUSG00000071178.11	Serpina1b	ENSMUSG00000071178.11	ENSMUST00000186166.6	protein_coding	chr12:103728156-103740515
chr12	103830198	103830533	+	L1M2	LINE	L1	chr12	103830372	103830374	-	ENSMUST00000164454.2,ENSMUSG00000071178.11	Serpina1b	ENSMUSG00000071178.11	ENSMUST00000164454.2	protein_coding	chr12:103728158-103830373
chr12	104112322	104112840	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	104112723	104112725	+	ENSMUST00000109965.7,ENSMUSG00000041536.13	Serpina3a	ENSMUSG00000041536.13	ENSMUST00000109965.7	protein_coding	chr12:104112724-104121896
chr12	104112322	104112840	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr12	104112779	104112781	+	ENSMUST00000185595.6,ENSMUSG00000041536.13	Serpina3a	ENSMUSG00000041536.13	ENSMUST00000185595.6	protein_coding	chr12:104112780-104121808
chr12	104509017	104509219	-	B3	SINE	B2	chr12	104509197	104509199	+	ENSMUST00000220520.1,ENSMUSG00000112954.1	AC122556.1	ENSMUSG00000112954.1	ENSMUST00000220520.1	lincRNA	chr12:104509198-104522726
chr12	104519890	104520083	+	MLT1L	LTR	ERVL-MaLR	chr12	104519967	104519969	+	ENSMUST00000222329.1,ENSMUSG00000112954.1	AC122556.1	ENSMUSG00000112954.1	ENSMUST00000222329.1	lincRNA	chr12:104519968-104525977
chr12	104864952	104865053	+	G-rich	Low_complexity	Low_complexity	chr12	104865008	104865010	-	ENSMUST00000109937.8,ENSMUSG00000021097.15	Clmn	ENSMUSG00000021097.15	ENSMUST00000109937.8	protein_coding	chr12:104771480-104865009
chr12	104865060	104865094	+	(CGGG)n	Simple_repeat	Simple_repeat	chr12	104865075	104865077	-	ENSMUST00000109936.2,ENSMUSG00000021097.15	Clmn	ENSMUSG00000021097.15	ENSMUST00000109936.2	protein_coding	chr12:104763117-104865076
chr12	104865060	104865094	+	(CGGG)n	Simple_repeat	Simple_repeat	chr12	104865075	104865077	-	ENSMUST00000223103.1,ENSMUSG00000021097.15	Clmn	ENSMUSG00000021097.15	ENSMUST00000223103.1	protein_coding	chr12:104771757-104865076
chr12	104865060	104865094	+	(CGGG)n	Simple_repeat	Simple_repeat	chr12	104865075	104865077	-	ENSMUST00000223342.1,ENSMUSG00000021097.15	Clmn	ENSMUSG00000021097.15	ENSMUST00000223342.1	protein_coding	chr12:104771757-104865076
chr12	104865060	104865094	+	(CGGG)n	Simple_repeat	Simple_repeat	chr12	104865075	104865077	-	ENSMUST00000223177.1,ENSMUSG00000021097.15	Clmn	ENSMUSG00000021097.15	ENSMUST00000223177.1	protein_coding	chr12:104771757-104865076
chr12	105020997	105021464	+	MT2C_Mm	LTR	ERVL	chr12	105021358	105021360	+	ENSMUST00000222271.1,ENSMUSG00000113995.1	Gm47648	ENSMUSG00000113995.1	ENSMUST00000222271.1	lincRNA	chr12:105021359-105029936
chr12	105145961	105146175	+	ID_B1	SINE	B4	chr12	105146013	105146015	+	ENSMUST00000142230.7,ENSMUSG00000060863.12	Tcl1b2	ENSMUSG00000060863.12	ENSMUST00000142230.7	protein_coding	chr12:105146014-105155009
chr12	105222774	105222824	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr12	105222792	105222794	-	ENSMUST00000175652.1,ENSMUSG00000041359.14	Tcl1	ENSMUSG00000041359.14	ENSMUST00000175652.1	protein_coding	chr12:105217498-105222793
chr12	105333734	105334232	+	MT2A	LTR	ERVL	chr12	105333869	105333871	+	ENSMUST00000222718.1,ENSMUSG00000097929.9	Tunar	ENSMUSG00000097929.9	ENSMUST00000222718.1	protein_coding	chr12:105333870-105337088
chr12	105336575	105336649	+	C-rich	Low_complexity	Low_complexity	chr12	105336593	105336595	+	ENSMUST00000180458.8,ENSMUSG00000097929.9	Tunar	ENSMUSG00000097929.9	ENSMUST00000180458.8	protein_coding	chr12:105336594-105383932
chr12	105513325	105513550	+	RMER2	LTR	ERV1	chr12	105513479	105513481	+	ENSMUST00000223443.1,ENSMUSG00000113535.1	AU015791	ENSMUSG00000113535.1	ENSMUST00000223443.1	lincRNA	chr12:105513480-105515246
chr12	105603941	105604142	-	MER58A	DNA	hAT-Charlie	chr12	105604090	105604092	+	ENSMUST00000041229.4,ENSMUSG00000041347.5	Bdkrb1	ENSMUSG00000041347.5	ENSMUST00000041229.4	protein_coding	chr12:105604091-105605428
chr12	105629567	105630307	+	IAPEz-int	LTR	ERVK	chr12	105629628	105629630	-	ENSMUST00000220960.1,ENSMUSG00000041341.10	Atg2b	ENSMUSG00000041341.10	ENSMUST00000220960.1	protein_coding	chr12:105616138-105629629
chr12	105645842	105645939	+	5S	rRNA	rRNA	chr12	105645842	105645844	+	ENSMUST00000157229.1,ENSMUSG00000087854.1	Gm22790	ENSMUSG00000087854.1	ENSMUST00000157229.1	rRNA	chr12:105645843-105645971
chr12	105817766	105817911	-	B1_Mm	SINE	Alu	chr12	105817879	105817881	+	ENSMUST00000170189.1,ENSMUSG00000021111.15	Papola	ENSMUSG00000021111.15	ENSMUST00000170189.1	protein_coding	chr12:105817880-105818830
chr12	105864154	105864425	+	ORR1A2	LTR	ERVL-MaLR	chr12	105864261	105864263	+	ENSMUST00000221840.1,ENSMUSG00000113537.1	Gm48807	ENSMUSG00000113537.1	ENSMUST00000221840.1	lincRNA	chr12:105864262-105874745
chr12	105865548	105866078	-	Lx5b	LINE	L1	chr12	105865792	105865794	-	ENSMUST00000175590.1,ENSMUSG00000093331.1	Gm22120	ENSMUSG00000093331.1	ENSMUST00000175590.1	miRNA	chr12:105865724-105865793
chr12	105899642	105900036	+	MLT1J	LTR	ERVL-MaLR	chr12	105899840	105899842	+	ENSMUST00000220934.1,ENSMUSG00000113835.1	Gm19554	ENSMUSG00000113835.1	ENSMUST00000220934.1	lincRNA	chr12:105899841-105902150
chr12	106084172	106084398	-	HAL1	LINE	L1	chr12	106084369	106084371	+	ENSMUST00000222979.1,ENSMUSG00000113427.1	Gm46378	ENSMUSG00000113427.1	ENSMUST00000222979.1	lincRNA	chr12:106084370-106088657
chr12	106098877	106099044	-	MTEa	LTR	ERVL-MaLR	chr12	106098970	106098972	-	ENSMUST00000221493.1,ENSMUSG00000113390.1	Gm32635	ENSMUSG00000113390.1	ENSMUST00000221493.1	lincRNA	chr12:106094823-106098971
chr12	106447635	106448035	-	ORR1D2	LTR	ERVL-MaLR	chr12	106447665	106447667	-	ENSMUST00000167922.1,ENSMUSG00000092066.1	1700121N20Rik	ENSMUSG00000092066.1	ENSMUST00000167922.1	lincRNA	chr12:106442653-106447666
chr12	106716265	106716562	+	ORR1E	LTR	ERVL-MaLR	chr12	106716361	106716363	-	ENSMUST00000135423.7,ENSMUSG00000085820.7	4933406K04Rik	ENSMUSG00000085820.7	ENSMUST00000135423.7	lincRNA	chr12:106685607-106716362
chr12	106716265	106716562	+	ORR1E	LTR	ERVL-MaLR	chr12	106716323	106716325	-	ENSMUST00000124363.7,ENSMUSG00000085820.7	4933406K04Rik	ENSMUSG00000085820.7	ENSMUST00000124363.7	lincRNA	chr12:106695716-106716324
chr12	106716265	106716562	+	ORR1E	LTR	ERVL-MaLR	chr12	106716332	106716334	-	ENSMUST00000124068.7,ENSMUSG00000085820.7	4933406K04Rik	ENSMUSG00000085820.7	ENSMUST00000124068.7	lincRNA	chr12:106701159-106716333
chr12	106716265	106716562	+	ORR1E	LTR	ERVL-MaLR	chr12	106716361	106716363	-	ENSMUST00000149382.1,ENSMUSG00000085820.7	4933406K04Rik	ENSMUSG00000085820.7	ENSMUST00000149382.1	lincRNA	chr12:106706049-106716362
chr12	106837920	106838087	+	Cheshire	DNA	hAT-Charlie	chr12	106837981	106837983	+	ENSMUST00000156376.1,ENSMUSG00000085801.1	1700013N06Rik	ENSMUSG00000085801.1	ENSMUST00000156376.1	lincRNA	chr12:106837982-106878841
chr12	107129619	107129714	+	MLT1A1	LTR	ERVL-MaLR	chr12	107129680	107129682	+	ENSMUST00000144575.1,ENSMUSG00000086037.1	Gm16085	ENSMUSG00000086037.1	ENSMUST00000144575.1	lincRNA	chr12:107129681-107132576
chr12	107183544	107183667	-	Lx8	LINE	L1	chr12	107183554	107183556	+	ENSMUST00000122988.1,ENSMUSG00000084871.1	Gm2800	ENSMUSG00000084871.1	ENSMUST00000122988.1	lincRNA	chr12:107183555-107186734
chr12	107488208	107489031	-	RMER19B	LTR	ERVK	chr12	107488582	107488584	-	ENSMUST00000222644.1,ENSMUSG00000113415.1	Gm3234	ENSMUSG00000113415.1	ENSMUST00000222644.1	lincRNA	chr12:107482746-107488583
chr12	107488208	107489031	-	RMER19B	LTR	ERVK	chr12	107488631	107488633	+	ENSMUST00000082269.2,ENSMUSG00000060375.2	3110018I06Rik	ENSMUSG00000060375.2	ENSMUST00000082269.2	protein_coding	chr12:107488632-107489636
chr12	108115067	108115154	+	ID_B1	SINE	B4	chr12	108115082	108115084	-	ENSMUST00000125210.1,ENSMUSG00000056770.15	Setd3	ENSMUSG00000056770.15	ENSMUST00000125210.1	protein_coding	chr12:108112130-108115083
chr12	108198760	108199158	-	L1_Mus4	LINE	L1	chr12	108199084	108199086	+	ENSMUST00000223363.1,ENSMUSG00000021258.10	Ccnk	ENSMUSG00000021258.10	ENSMUST00000223363.1	protein_coding	chr12:108199085-108202146
chr12	108275396	108275472	+	GC_rich	Low_complexity	Low_complexity	chr12	108275424	108275426	-	ENSMUST00000222310.1,ENSMUSG00000084883.2	Ccdc85c	ENSMUSG00000084883.2	ENSMUST00000222310.1	protein_coding	chr12:108203602-108275425
chr12	108352182	108352420	-	MLT1J	LTR	ERVL-MaLR	chr12	108352223	108352225	+	ENSMUST00000222240.1,ENSMUSG00000021259.5	Cyp46a1	ENSMUSG00000021259.5	ENSMUST00000222240.1	protein_coding	chr12:108352224-108353152
chr12	108658594	108658723	-	MamSINE1	SINE	tRNA	chr12	108658619	108658621	+	ENSMUST00000083502.1,ENSMUSG00000065436.1	Mir342	ENSMUSG00000065436.1	ENSMUST00000083502.1	miRNA	chr12:108658620-108658718
chr12	108721847	108721927	+	B1_Mur4	SINE	Alu	chr12	108721923	108721925	-	ENSMUST00000175432.1,ENSMUSG00000093173.1	Gm23872	ENSMUSG00000093173.1	ENSMUST00000175432.1	miRNA	chr12:108721848-108721924
chr12	108831499	108831642	+	MIRc	SINE	MIR	chr12	108831616	108831618	-	ENSMUST00000137023.1,ENSMUSG00000021265.3	Slc25a29	ENSMUSG00000021265.3	ENSMUST00000137023.1	protein_coding	chr12:108827224-108831617
chr12	109020761	109020802	+	(CA)n	Simple_repeat	Simple_repeat	chr12	109020801	109020803	+	ENSMUST00000221510.1,ENSMUSG00000040877.16	Wdr25	ENSMUSG00000040877.16	ENSMUST00000221510.1	protein_coding	chr12:109020802-109028448
chr12	109067991	109068291	+	GC_rich	Low_complexity	Low_complexity	chr12	109068216	109068218	-	ENSMUST00000190647.2,ENSMUSG00000040867.12	Begain	ENSMUSG00000040867.12	ENSMUST00000190647.2	protein_coding	chr12:109032187-109068217
chr12	109068179	109068322	+	GC_rich	Low_complexity	Low_complexity	chr12	109068216	109068218	-	ENSMUST00000190647.2,ENSMUSG00000040867.12	Begain	ENSMUSG00000040867.12	ENSMUST00000190647.2	protein_coding	chr12:109032187-109068217
chr12	109319171	109319567	-	MTA_Mm	LTR	ERVL-MaLR	chr12	109319515	109319517	-	ENSMUST00000174906.1,ENSMUSG00000092647.1	Gm22234	ENSMUSG00000092647.1	ENSMUST00000174906.1	miRNA	chr12:109319452-109319516
chr12	109320657	109321086	-	MTA_Mm	LTR	ERVL-MaLR	chr12	109321035	109321037	-	ENSMUST00000175490.1,ENSMUSG00000093231.1	Gm25297	ENSMUSG00000093231.1	ENSMUST00000175490.1	miRNA	chr12:109320970-109321036
chr12	109544535	109544588	+	MIR	SINE	MIR	chr12	109544540	109544542	+	ENSMUST00000122586.1,ENSMUSG00000084535.1	Mir1906-1	ENSMUSG00000084535.1	ENSMUST00000122586.1	miRNA	chr12:109544541-109544620
chr12	109545362	109545399	+	G-rich	Low_complexity	Low_complexity	chr12	109545397	109545399	+	ENSMUST00000146701.7,ENSMUSG00000021268.17	Meg3	ENSMUSG00000021268.17	ENSMUST00000146701.7	lincRNA	chr12:109545398-109571726
chr12	109611754	109611904	-	MIRc	SINE	MIR	chr12	109611821	109611823	+	ENSMUST00000116756.1,ENSMUSG00000080406.1	Mir1188	ENSMUSG00000080406.1	ENSMUST00000116756.1	miRNA	chr12:109611822-109611941
chr12	109729285	109729436	-	MER5A1	DNA	hAT-Charlie	chr12	109729324	109729326	+	ENSMUST00000103813.2,ENSMUSG00000077001.2	Mir544	ENSMUSG00000077001.2	ENSMUST00000103813.2	miRNA	chr12:109729325-109729402
chr12	110086338	110086614	-	MLT1A0	LTR	ERVL-MaLR	chr12	110086422	110086424	-	ENSMUST00000222231.1,ENSMUSG00000113868.1	Gm34719	ENSMUSG00000113868.1	ENSMUST00000222231.1	lincRNA	chr12:110046686-110086423
chr12	110278115	110278144	+	GC_rich	Low_complexity	Low_complexity	chr12	110278128	110278130	-	ENSMUST00000116706.1,ENSMUSG00000080356.1	Mir1247	ENSMUSG00000080356.1	ENSMUST00000116706.1	miRNA	chr12:110278048-110278129
chr12	110315429	110317368	+	L1_Mur2	LINE	L1	chr12	110315989	110315991	+	ENSMUST00000222676.1,ENSMUSG00000113198.1	Gm6988	ENSMUSG00000113198.1	ENSMUST00000222676.1	processed_pseudogene	chr12:110315990-110316364
chr12	110447231	110447347	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	110447251	110447253	+	ENSMUST00000220509.1,ENSMUSG00000017843.14	Ppp2r5c	ENSMUSG00000017843.14	ENSMUST00000220509.1	protein_coding	chr12:110447252-110551110
chr12	110447231	110447347	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	110447306	110447308	+	ENSMUST00000223168.1,ENSMUSG00000017843.14	Ppp2r5c	ENSMUSG00000017843.14	ENSMUST00000223168.1	protein_coding	chr12:110447307-110570911
chr12	110660529	110660638	+	L1Md_T	LINE	L1	chr12	110660591	110660593	+	ENSMUST00000171535.1,ENSMUSG00000018707.13	Dync1h1	ENSMUSG00000018707.13	ENSMUST00000171535.1	protein_coding	chr12:110660592-110661470
chr12	110694254	110694301	+	CT-rich	Low_complexity	Low_complexity	chr12	110694291	110694293	-	ENSMUST00000134967.1,ENSMUSG00000021270.13	Hsp90aa1	ENSMUSG00000021270.13	ENSMUST00000134967.1	protein_coding	chr12:110693660-110694292
chr12	110915046	110915096	+	(TG)n	Simple_repeat	Simple_repeat	chr12	110915050	110915052	+	ENSMUST00000221605.1,ENSMUSG00000021275.16	Tecpr2	ENSMUSG00000021275.16	ENSMUST00000221605.1	protein_coding	chr12:110915051-110926235
chr12	110978246	110978336	-	MIR3	SINE	MIR	chr12	110978254	110978256	-	ENSMUST00000148765.1,ENSMUSG00000037904.14	Ankrd9	ENSMUSG00000037904.14	ENSMUST00000148765.1	protein_coding	chr12:110976426-110978255
chr12	110979002	110979064	+	GC_rich	Low_complexity	Low_complexity	chr12	110979039	110979041	-	ENSMUST00000128353.7,ENSMUSG00000037904.14	Ankrd9	ENSMUSG00000037904.14	ENSMUST00000128353.7	protein_coding	chr12:110975353-110979040
chr12	110979002	110979064	+	GC_rich	Low_complexity	Low_complexity	chr12	110979020	110979022	-	ENSMUST00000043459.12,ENSMUSG00000037904.14	Ankrd9	ENSMUSG00000037904.14	ENSMUST00000043459.12	protein_coding	chr12:110976427-110979021
chr12	111018164	111018532	+	MTE-int	LTR	ERVL-MaLR	chr12	111018401	111018403	-	ENSMUST00000223165.1,ENSMUSG00000113597.1	Gm48631	ENSMUSG00000113597.1	ENSMUST00000223165.1	TEC	chr12:111017444-111018402
chr12	111091107	111092033	-	Lx7	LINE	L1	chr12	111091199	111091201	+	ENSMUST00000221105.1,ENSMUSG00000113200.1	Gm48632	ENSMUSG00000113200.1	ENSMUST00000221105.1	TEC	chr12:111091200-111093941
chr12	111166468	111166498	+	GC_rich	Low_complexity	Low_complexity	chr12	111166485	111166487	+	ENSMUST00000139162.7,ENSMUSG00000021277.16	Traf3	ENSMUSG00000021277.16	ENSMUST00000139162.7	protein_coding	chr12:111166486-111239077
chr12	111183922	111185108	+	MTE-int	LTR	ERVL-MaLR	chr12	111184490	111184492	-	ENSMUST00000121608.1,ENSMUSG00000083193.1	4930595D18Rik	ENSMUSG00000083193.1	ENSMUST00000121608.1	protein_coding	chr12:111159850-111184491
chr12	111498609	111499863	+	MERVK26-int	LTR	ERVK	chr12	111499621	111499623	-	ENSMUST00000221429.1,ENSMUSG00000113029.1	Gm40578	ENSMUSG00000113029.1	ENSMUST00000221429.1	antisense	chr12:111450405-111499622
chr12	111500315	111501240	+	MERVK26-int	LTR	ERVK	chr12	111500839	111500841	-	ENSMUST00000220837.1,ENSMUSG00000113029.1	Gm40578	ENSMUSG00000113029.1	ENSMUST00000220837.1	antisense	chr12:111496613-111500840
chr12	111588054	111588185	-	B1_Mur2	SINE	Alu	chr12	111588149	111588151	+	ENSMUST00000221631.1,ENSMUSG00000007411.16	Mark3	ENSMUSG00000007411.16	ENSMUST00000221631.1	protein_coding	chr12:111588150-111628417
chr12	111616859	111616896	-	PB1D9	SINE	Alu	chr12	111616869	111616871	+	ENSMUST00000220971.1,ENSMUSG00000113910.1	Gm48286	ENSMUSG00000113910.1	ENSMUST00000220971.1	sense_overlapping	chr12:111616870-111637388
chr12	111616863	111616907	-	B1F2	SINE	Alu	chr12	111616869	111616871	+	ENSMUST00000220971.1,ENSMUSG00000113910.1	Gm48286	ENSMUSG00000113910.1	ENSMUST00000220971.1	sense_overlapping	chr12:111616870-111637388
chr12	111654642	111654725	-	PB1	SINE	Alu	chr12	111654658	111654660	+	ENSMUST00000221841.1,ENSMUSG00000007411.16	Mark3	ENSMUSG00000007411.16	ENSMUST00000221841.1	protein_coding	chr12:111654659-111655694
chr12	111702836	111703111	+	IMPB_01	Satellite	Satellite	chr12	111703081	111703083	+	ENSMUST00000221152.1,ENSMUSG00000112991.1	Gm36635	ENSMUSG00000112991.1	ENSMUST00000221152.1	lincRNA	chr12:111703082-111705550
chr12	111712891	111712941	+	GC_rich	Low_complexity	Low_complexity	chr12	111712926	111712928	-	ENSMUST00000160576.1,ENSMUSG00000049792.6	Bag5	ENSMUSG00000049792.6	ENSMUST00000160576.1	protein_coding	chr12:111709904-111712927
chr12	111712953	111712975	+	GC_rich	Low_complexity	Low_complexity	chr12	111712952	111712954	-	ENSMUST00000160825.1,ENSMUSG00000049792.6	Bag5	ENSMUSG00000049792.6	ENSMUST00000160825.1	protein_coding	chr12:111711209-111712953
chr12	111712953	111712975	+	GC_rich	Low_complexity	Low_complexity	chr12	111712952	111712954	-	ENSMUST00000162953.1,ENSMUSG00000049792.6	Bag5	ENSMUSG00000049792.6	ENSMUST00000162953.1	protein_coding	chr12:111711275-111712953
chr12	111731727	111731841	+	B1_Mus2	SINE	Alu	chr12	111731830	111731832	-	ENSMUST00000161925.1,ENSMUSG00000090026.1	Gm15996	ENSMUSG00000090026.1	ENSMUST00000161925.1	antisense	chr12:111730094-111731831
chr12	111908016	111908092	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	111908039	111908041	-	ENSMUST00000163747.3,ENSMUSG00000021285.15	Ppp1r13b	ENSMUSG00000021285.15	ENSMUST00000163747.3	protein_coding	chr12:111866015-111908040
chr12	112349933	112350617	+	L1MEg	LINE	L1	chr12	112350066	112350068	-	ENSMUST00000194990.1,ENSMUSG00000103080.1	Gm38123	ENSMUSG00000103080.1	ENSMUST00000194990.1	TEC	chr12:112347289-112350067
chr12	112516540	112516885	-	ORR1A1	LTR	ERVL-MaLR	chr12	112516746	112516748	-	ENSMUST00000222836.1,ENSMUSG00000054013.6	Tmem179	ENSMUSG00000054013.6	ENSMUST00000222836.1	protein_coding	chr12:112501738-112516747
chr12	112674217	112674332	+	(CCG)n	Simple_repeat	Simple_repeat	chr12	112674275	112674277	-	ENSMUST00000001780.9,ENSMUSG00000001729.14	Akt1	ENSMUSG00000001729.14	ENSMUST00000001780.9	protein_coding	chr12:112653821-112674276
chr12	112678816	112678877	+	GC_rich	Low_complexity	Low_complexity	chr12	112678827	112678829	+	ENSMUST00000174780.1,ENSMUSG00000037638.5	Zbtb42	ENSMUSG00000037638.5	ENSMUST00000174780.1	protein_coding	chr12:112678828-112682747
chr12	112678816	112678877	+	GC_rich	Low_complexity	Low_complexity	chr12	112678839	112678841	+	ENSMUST00000169593.1,ENSMUSG00000037638.5	Zbtb42	ENSMUSG00000037638.5	ENSMUST00000169593.1	protein_coding	chr12:112678840-112682747
chr12	112722117	112722174	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr12	112722173	112722175	+	ENSMUST00000101018.10,ENSMUSG00000072825.11	Cep170b	ENSMUSG00000072825.11	ENSMUST00000101018.10	protein_coding	chr12:112722174-112746592
chr12	112986379	112986607	+	B4A	SINE	B4	chr12	112986518	112986520	-	ENSMUST00000221680.1,ENSMUSG00000011158.8	Brf1	ENSMUSG00000011158.8	ENSMUST00000221680.1	protein_coding	chr12:112970137-112986519
chr12	112986721	112986749	+	(GTTTG)n	Simple_repeat	Simple_repeat	chr12	112986732	112986734	-	ENSMUST00000223506.1,ENSMUSG00000011158.8	Brf1	ENSMUSG00000011158.8	ENSMUST00000223506.1	protein_coding	chr12:112969274-112986733
chr12	113014419	113014517	+	C-rich	Low_complexity	Low_complexity	chr12	113014507	113014509	+	ENSMUST00000223502.1,ENSMUSG00000021143.10	Pacs2	ENSMUSG00000021143.10	ENSMUST00000223502.1	protein_coding	chr12:113014508-113072138
chr12	113014419	113014517	+	C-rich	Low_complexity	Low_complexity	chr12	113014507	113014509	+	ENSMUST00000084891.4,ENSMUSG00000021143.10	Pacs2	ENSMUSG00000021143.10	ENSMUST00000084891.4	protein_coding	chr12:113014508-113074401
chr12	113014517	113014604	+	GC_rich	Low_complexity	Low_complexity	chr12	113014532	113014534	+	ENSMUST00000220541.1,ENSMUSG00000021143.10	Pacs2	ENSMUSG00000021143.10	ENSMUST00000220541.1	protein_coding	chr12:113014533-113072137
chr12	113014517	113014604	+	GC_rich	Low_complexity	Low_complexity	chr12	113014533	113014535	+	ENSMUST00000222406.1,ENSMUSG00000021143.10	Pacs2	ENSMUSG00000021143.10	ENSMUST00000222406.1	protein_coding	chr12:113014534-113049855
chr12	113098260	113098296	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	113098277	113098279	+	ENSMUST00000109727.8,ENSMUSG00000021144.14	Mta1	ENSMUSG00000021144.14	ENSMUST00000109727.8	protein_coding	chr12:113098278-113137205
chr12	113098260	113098296	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	113098277	113098279	+	ENSMUST00000009099.12,ENSMUSG00000021144.14	Mta1	ENSMUSG00000021144.14	ENSMUST00000009099.12	protein_coding	chr12:113098278-113137206
chr12	113098260	113098296	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	113098277	113098279	+	ENSMUST00000109723.7,ENSMUSG00000021144.14	Mta1	ENSMUSG00000021144.14	ENSMUST00000109723.7	protein_coding	chr12:113098278-113137206
chr12	113098260	113098296	+	(CGG)n	Simple_repeat	Simple_repeat	chr12	113098277	113098279	+	ENSMUST00000109726.7,ENSMUSG00000021144.14	Mta1	ENSMUSG00000021144.14	ENSMUST00000109726.7	protein_coding	chr12:113098278-113137206
chr12	113098319	113098413	+	C-rich	Low_complexity	Low_complexity	chr12	113098322	113098324	+	ENSMUST00000069690.4,ENSMUSG00000021144.14	Mta1	ENSMUSG00000021144.14	ENSMUST00000069690.4	protein_coding	chr12:113098323-113137173
chr12	113098319	113098413	+	C-rich	Low_complexity	Low_complexity	chr12	113098400	113098402	+	ENSMUST00000130926.7,ENSMUSG00000021144.14	Mta1	ENSMUSG00000021144.14	ENSMUST00000130926.7	protein_coding	chr12:113098401-113136669
chr12	113185833	113185940	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr12	113185929	113185931	+	ENSMUST00000058491.7,ENSMUSG00000049036.7	Tmem121	ENSMUSG00000049036.7	ENSMUST00000058491.7	protein_coding	chr12:113185930-113189523
chr12	113214148	113214246	+	U6	snRNA	snRNA	chr12	113214148	113214150	+	ENSMUST00000157217.1,ENSMUSG00000087842.1	Gm25622	ENSMUSG00000087842.1	ENSMUST00000157217.1	snRNA	chr12:113214149-113214252
chr12	113424138	113425552	+	(CAGCT)n	Simple_repeat	Simple_repeat	chr12	113424721	113424723	-	ENSMUST00000174942.1,ENSMUSG00000092683.1	Gm25747	ENSMUSG00000092683.1	ENSMUST00000174942.1	miRNA	chr12:113424645-113424722
chr12	113424138	113425552	+	(CAGCT)n	Simple_repeat	Simple_repeat	chr12	113424787	113424789	-	ENSMUST00000174996.2,ENSMUSG00000092737.2	Gm24022	ENSMUSG00000092737.2	ENSMUST00000174996.2	miRNA	chr12:113424719-113424788
chr12	113424138	113425552	+	(CAGCT)n	Simple_repeat	Simple_repeat	chr12	113424782	113424784	-	ENSMUST00000196624.1,ENSMUSG00000104594.1	Gm24022	ENSMUSG00000104594.1	ENSMUST00000196624.1	miRNA	chr12:113424724-113424783
chr12	113424138	113425552	+	(CAGCT)n	Simple_repeat	Simple_repeat	chr12	113425226	113425228	-	ENSMUST00000175007.1,ENSMUSG00000092748.1	Gm22175	ENSMUSG00000092748.1	ENSMUST00000175007.1	miRNA	chr12:113425150-113425227
chr12	113654939	113654969	+	(TA)n	Simple_repeat	Simple_repeat	chr12	113654966	113654968	+	ENSMUST00000166255.1,ENSMUSG00000090395.1	Ighv5-8	ENSMUSG00000090395.1	ENSMUST00000166255.1	IG_LV_gene	chr12:113654967-113655244
chr12	115685267	115690620	+	L1Md_T	LINE	L1	chr12	115688839	115688841	+	ENSMUST00000205482.1,ENSMUSG00000108559.1	Gm44782	ENSMUSG00000108559.1	ENSMUST00000205482.1	unprocessed_pseudogene	chr12:115688840-115688889
chr12	116173312	116173419	+	U6	snRNA	snRNA	chr12	116173312	116173314	+	ENSMUST00000083751.1,ENSMUSG00000065685.1	Gm23732	ENSMUSG00000065685.1	ENSMUST00000083751.1	snRNA	chr12:116173313-116173419
chr12	116242520	116242567	+	(CATA)n	Simple_repeat	Simple_repeat	chr12	116242566	116242568	-	ENSMUST00000180307.1,ENSMUSG00000096694.1	Gm23190	ENSMUSG00000096694.1	ENSMUST00000180307.1	miRNA	chr12:116242504-116242567
chr12	116275351	116275405	+	(GAAA)n	Simple_repeat	Simple_repeat	chr12	116275385	116275387	+	ENSMUST00000090195.4,ENSMUSG00000078984.1	Gm11027	ENSMUSG00000078984.1	ENSMUST00000090195.4	protein_coding	chr12:116275386-116275612
chr12	116476895	116476999	-	U6	snRNA	snRNA	chr12	116476998	116477000	-	ENSMUST00000122680.1,ENSMUSG00000084629.1	Gm25112	ENSMUSG00000084629.1	ENSMUST00000122680.1	snRNA	chr12:116476896-116476999
chr12	116485677	116485726	+	G-rich	Low_complexity	Low_complexity	chr12	116485719	116485721	+	ENSMUST00000185505.6,ENSMUSG00000056553.14	Ptprn2	ENSMUSG00000056553.14	ENSMUST00000185505.6	protein_coding	chr12:116485720-116773330
chr12	116504193	116510415	-	Lx	LINE	L1	chr12	116507882	116507884	-	ENSMUST00000189273.1,ENSMUSG00000101236.1	Gm6750	ENSMUSG00000101236.1	ENSMUST00000189273.1	processed_pseudogene	chr12:116507616-116507883
chr12	116847444	116853468	-	L1Md_T	LINE	L1	chr12	116853101	116853103	-	ENSMUST00000220994.1,ENSMUSG00000113795.1	Gm48119	ENSMUSG00000113795.1	ENSMUST00000220994.1	processed_pseudogene	chr12:116850478-116853102
chr12	117574341	117574430	+	5S	rRNA	rRNA	chr12	117574341	117574343	+	ENSMUST00000158857.1,ENSMUSG00000089482.1	Gm24741	ENSMUSG00000089482.1	ENSMUST00000158857.1	rRNA	chr12:117574342-117574447
chr12	117803966	117804464	+	MT2_Mm	LTR	ERVL	chr12	117804288	117804290	+	ENSMUST00000176499.1,ENSMUSG00000021175.15	Cdca7l	ENSMUSG00000021175.15	ENSMUST00000176499.1	protein_coding	chr12:117804289-117870047
chr12	118504927	118505034	-	U6	snRNA	snRNA	chr12	118505033	118505035	-	ENSMUST00000083414.1,ENSMUSG00000065348.1	Gm25577	ENSMUSG00000065348.1	ENSMUST00000083414.1	snRNA	chr12:118504928-118505034
chr12	118753102	118753570	-	Lx5	LINE	L1	chr12	118753553	118753555	+	ENSMUST00000158172.1,ENSMUSG00000088797.1	Gm22537	ENSMUSG00000088797.1	ENSMUST00000158172.1	misc_RNA	chr12:118753554-118753752
chr12	118924402	118924960	-	MT2_Mm	LTR	ERVL	chr12	118924579	118924581	-	ENSMUST00000100982.4,ENSMUSG00000072791.11	Abcb5	ENSMUSG00000072791.11	ENSMUST00000100982.4	protein_coding	chr12:118886618-118924580
chr12	119067430	119067550	-	ORR1A2	LTR	ERVL-MaLR	chr12	119067429	119067431	-	ENSMUST00000221798.1,ENSMUSG00000114030.1	Gm18921	ENSMUSG00000114030.1	ENSMUST00000221798.1	processed_pseudogene	chr12:119067065-119067430
chr12	119314254	119314407	+	RSINE1	SINE	B4	chr12	119314269	119314271	+	ENSMUST00000222784.1,ENSMUSG00000041886.7	Macc1	ENSMUSG00000041886.7	ENSMUST00000222784.1	protein_coding	chr12:119314270-119466934
chr12	119566398	119570144	+	MMERVK10D3_I-int	LTR	ERVK	chr12	119567250	119567252	-	ENSMUST00000223043.1,ENSMUSG00000114186.1	Gm48681	ENSMUSG00000114186.1	ENSMUST00000223043.1	lincRNA	chr12:119564371-119567251
chr12	119919340	119919441	-	5S	rRNA	rRNA	chr12	119919440	119919442	-	ENSMUST00000174979.1,ENSMUSG00000092720.1	Gm25675	ENSMUSG00000092720.1	ENSMUST00000174979.1	rRNA	chr12:119919324-119919441
chr13	3141471	3141822	-	Lx6	LINE	L1	chr13	3141502	3141504	-	ENSMUST00000223427.1,ENSMUSG00000112973.1	Gm48520	ENSMUSG00000112973.1	ENSMUST00000223427.1	processed_pseudogene	chr13:3141356-3141503
chr13	3169492	3171151	+	Lx2A1	LINE	L1	chr13	3169993	3169995	+	ENSMUST00000222775.1,ENSMUSG00000091304.2	Speer6-ps1	ENSMUSG00000091304.2	ENSMUST00000222775.1	transcribed_unprocessed_pseudogene	chr13:3169994-3173117
chr13	3273047	3273436	-	L1MA5	LINE	L1	chr13	3273234	3273236	+	ENSMUST00000220471.1,ENSMUSG00000113271.1	Gm40653	ENSMUSG00000113271.1	ENSMUST00000220471.1	lincRNA	chr13:3273235-3282717
chr13	3273047	3273436	-	L1MA5	LINE	L1	chr13	3273276	3273278	+	ENSMUST00000222751.1,ENSMUSG00000113271.1	Gm40653	ENSMUSG00000113271.1	ENSMUST00000222751.1	lincRNA	chr13:3273277-3282820
chr13	3273047	3273436	-	L1MA5	LINE	L1	chr13	3273288	3273290	+	ENSMUST00000222122.1,ENSMUSG00000113271.1	Gm40653	ENSMUSG00000113271.1	ENSMUST00000222122.1	lincRNA	chr13:3273289-3282820
chr13	3273047	3273436	-	L1MA5	LINE	L1	chr13	3273288	3273290	+	ENSMUST00000222272.1,ENSMUSG00000113271.1	Gm40653	ENSMUSG00000113271.1	ENSMUST00000222272.1	lincRNA	chr13:3273289-3282998
chr13	3497833	3498219	-	L1MA5	LINE	L1	chr13	3498044	3498046	+	ENSMUST00000188642.1,ENSMUSG00000097709.8	2810429I04Rik	ENSMUSG00000097709.8	ENSMUST00000188642.1	lincRNA	chr13:3498045-3501393
chr13	3538081	3538141	+	C-rich	Low_complexity	Low_complexity	chr13	3538082	3538084	+	ENSMUST00000221575.1,ENSMUSG00000021218.10	Gdi2	ENSMUSG00000021218.10	ENSMUST00000221575.1	protein_coding	chr13:3538083-3554432
chr13	3538081	3538141	+	C-rich	Low_complexity	Low_complexity	chr13	3538127	3538129	+	ENSMUST00000221875.1,ENSMUSG00000021218.10	Gdi2	ENSMUSG00000021218.10	ENSMUST00000221875.1	protein_coding	chr13:3538128-3561271
chr13	3538081	3538141	+	C-rich	Low_complexity	Low_complexity	chr13	3538129	3538131	+	ENSMUST00000222926.1,ENSMUSG00000021218.10	Gdi2	ENSMUSG00000021218.10	ENSMUST00000222926.1	protein_coding	chr13:3538130-3543080
chr13	3538081	3538141	+	C-rich	Low_complexity	Low_complexity	chr13	3538129	3538131	+	ENSMUST00000059515.7,ENSMUSG00000021218.10	Gdi2	ENSMUSG00000021218.10	ENSMUST00000059515.7	protein_coding	chr13:3538130-3565820
chr13	3538081	3538141	+	C-rich	Low_complexity	Low_complexity	chr13	3538133	3538135	+	ENSMUST00000221348.1,ENSMUSG00000021218.10	Gdi2	ENSMUSG00000021218.10	ENSMUST00000221348.1	protein_coding	chr13:3538134-3551077
chr13	3553911	3554051	+	B1_Mm	SINE	Alu	chr13	3554038	3554040	+	ENSMUST00000223501.1,ENSMUSG00000021218.10	Gdi2	ENSMUSG00000021218.10	ENSMUST00000223501.1	protein_coding	chr13:3554039-3557044
chr13	3825471	3825573	+	MIRb	SINE	MIR	chr13	3825518	3825520	+	ENSMUST00000220802.1,ENSMUSG00000114091.1	Gm40655	ENSMUSG00000114091.1	ENSMUST00000220802.1	sense_overlapping	chr13:3825519-3843909
chr13	3957118	3957261	+	B1_Mus2	SINE	Alu	chr13	3957241	3957243	-	ENSMUST00000175269.1,ENSMUSG00000093010.1	Gm22460	ENSMUSG00000093010.1	ENSMUST00000175269.1	miRNA	chr13:3957119-3957242
chr13	4023166	4025824	+	L1VL1	LINE	L1	chr13	4023168	4023170	+	ENSMUST00000221030.1,ENSMUSG00000113667.1	Gm47853	ENSMUSG00000113667.1	ENSMUST00000221030.1	processed_pseudogene	chr13:4023169-4025827
chr13	4093702	4098223	+	L1_Mus2	LINE	L1	chr13	4097497	4097499	+	ENSMUST00000220915.1,ENSMUSG00000113517.1	Gm47905	ENSMUSG00000113517.1	ENSMUST00000220915.1	TEC	chr13:4097498-4100831
chr13	4245178	4245561	-	ERVB7_2-LTR_MM	LTR	ERVK	chr13	4245327	4245329	+	ENSMUST00000129751.1,ENSMUSG00000071551.13	Akr1c19	ENSMUSG00000071551.13	ENSMUST00000129751.1	protein_coding	chr13:4245328-4248681
chr13	4366682	4371901	+	L1_Mur1	LINE	L1	chr13	4368680	4368682	+	ENSMUST00000221635.1,ENSMUSG00000113004.1	Gm47951	ENSMUSG00000113004.1	ENSMUST00000221635.1	processed_pseudogene	chr13:4368681-4372417
chr13	4381779	4382417	+	RLTR6_Mm	LTR	ERV1	chr13	4382410	4382412	-	ENSMUST00000221251.1,ENSMUSG00000113175.1	Gm9973	ENSMUSG00000113175.1	ENSMUST00000221251.1	transcribed_unprocessed_pseudogene	chr13:4350673-4382411
chr13	4643584	4644059	+	MT2C_Mm	LTR	ERVL	chr13	4643906	4643908	+	ENSMUST00000221900.1,ENSMUSG00000113717.1	Gm40658	ENSMUSG00000113717.1	ENSMUST00000221900.1	lincRNA	chr13:4643907-4749064
chr13	4725307	4726073	+	RMER17A	LTR	ERVK	chr13	4725458	4725460	+	ENSMUST00000220455.1,ENSMUSG00000113717.1	Gm40658	ENSMUSG00000113717.1	ENSMUST00000220455.1	lincRNA	chr13:4725459-4748950
chr13	4725307	4726073	+	RMER17A	LTR	ERVK	chr13	4725458	4725460	+	ENSMUST00000222210.1,ENSMUSG00000113717.1	Gm40658	ENSMUSG00000113717.1	ENSMUST00000222210.1	lincRNA	chr13:4725459-4748950
chr13	4942652	4943122	+	IAPLTR2_Mm	LTR	ERVK	chr13	4943051	4943053	-	ENSMUST00000222131.1,ENSMUSG00000113866.1	Gm47450	ENSMUSG00000113866.1	ENSMUST00000222131.1	lincRNA	chr13:4915714-4943052
chr13	5216175	5216308	+	L1Md_F2	LINE	L1	chr13	5216177	5216179	-	ENSMUST00000223476.1,ENSMUSG00000113668.1	Gm47451	ENSMUSG00000113668.1	ENSMUST00000223476.1	unprocessed_pseudogene	chr13:5215791-5216178
chr13	5454572	5455074	+	RLTR10C	LTR	ERVK	chr13	5454908	5454910	+	ENSMUST00000220659.1,ENSMUSG00000114098.1	Gm40660	ENSMUSG00000114098.1	ENSMUST00000220659.1	lincRNA	chr13:5454909-5499702
chr13	5454572	5455074	+	RLTR10C	LTR	ERVK	chr13	5454908	5454910	+	ENSMUST00000220493.1,ENSMUSG00000114098.1	Gm40660	ENSMUSG00000114098.1	ENSMUST00000220493.1	lincRNA	chr13:5454909-5508785
chr13	5454572	5455074	+	RLTR10C	LTR	ERVK	chr13	5454908	5454910	+	ENSMUST00000223343.1,ENSMUSG00000114098.1	Gm40660	ENSMUSG00000114098.1	ENSMUST00000223343.1	lincRNA	chr13:5454909-5560329
chr13	5550987	5551382	+	MTB_Mm	LTR	ERVL-MaLR	chr13	5551031	5551033	-	ENSMUST00000221213.1,ENSMUSG00000114053.1	AC133498.1	ENSMUSG00000114053.1	ENSMUST00000221213.1	lincRNA	chr13:5541551-5551032
chr13	5997516	5997580	+	(CA)n	Simple_repeat	Simple_repeat	chr13	5997550	5997552	-	ENSMUST00000104778.1,ENSMUSG00000077971.1	Gm26259	ENSMUSG00000077971.1	ENSMUST00000104778.1	miRNA	chr13:5997455-5997551
chr13	6268975	6269161	-	IAPEz-int	LTR	ERVK	chr13	6269107	6269109	+	ENSMUST00000222170.1,ENSMUSG00000113765.1	Gm47549	ENSMUSG00000113765.1	ENSMUST00000222170.1	lincRNA	chr13:6269108-6277026
chr13	6294479	6294919	+	RMER17A2	LTR	ERVK	chr13	6294713	6294715	-	ENSMUST00000221255.1,ENSMUSG00000114097.1	Gm35615	ENSMUSG00000114097.1	ENSMUST00000221255.1	lincRNA	chr13:6280378-6294714
chr13	6396046	6396175	+	C-rich	Low_complexity	Low_complexity	chr13	6396171	6396173	+	ENSMUST00000220779.1,ENSMUSG00000101540.2	Gm28465	ENSMUSG00000101540.2	ENSMUST00000220779.1	lincRNA	chr13:6396172-6398740
chr13	6667782	6674639	-	L1Md_T	LINE	L1	chr13	6673138	6673140	+	ENSMUST00000223351.1,ENSMUSG00000113545.1	Gm48238	ENSMUSG00000113545.1	ENSMUST00000223351.1	processed_pseudogene	chr13:6673139-6673408
chr13	6925679	6925879	+	MTC	LTR	ERVL-MaLR	chr13	6925850	6925852	-	ENSMUST00000220700.1,ENSMUSG00000113932.1	2900024D18Rik	ENSMUSG00000113932.1	ENSMUST00000220700.1	TEC	chr13:6925283-6925851
chr13	7076087	7076421	-	ORR1A2	LTR	ERVL-MaLR	chr13	7076315	7076317	-	ENSMUST00000222263.1,ENSMUSG00000114017.1	Gm40662	ENSMUSG00000114017.1	ENSMUST00000222263.1	lincRNA	chr13:6995654-7076316
chr13	7076087	7076421	-	ORR1A2	LTR	ERVL-MaLR	chr13	7076315	7076317	-	ENSMUST00000222208.1,ENSMUSG00000114017.1	Gm40662	ENSMUSG00000114017.1	ENSMUST00000222208.1	lincRNA	chr13:7008598-7076316
chr13	7175666	7176098	-	RLTR9E	LTR	ERVK	chr13	7175924	7175926	-	ENSMUST00000221816.1,ENSMUSG00000113241.1	Gm40663	ENSMUSG00000113241.1	ENSMUST00000221816.1	lincRNA	chr13:7154096-7175925
chr13	7442535	7446917	-	Lx	LINE	L1	chr13	7446508	7446510	+	ENSMUST00000221383.1,ENSMUSG00000113225.1	Gm36074	ENSMUSG00000113225.1	ENSMUST00000221383.1	lincRNA	chr13:7446509-7465343
chr13	7752060	7756737	-	L1_Mus1	LINE	L1	chr13	7753277	7753279	-	ENSMUST00000220516.1,ENSMUSG00000113828.1	Gm48252	ENSMUSG00000113828.1	ENSMUST00000220516.1	unprocessed_pseudogene	chr13:7753170-7753278
chr13	8037389	8042461	+	L1Md_A	LINE	L1	chr13	8038217	8038219	-	ENSMUST00000165220.3,ENSMUSG00000113508.1	Gm9742	ENSMUSG00000113508.1	ENSMUST00000165220.3	transcribed_processed_pseudogene	chr13:8013696-8038218
chr13	8294627	8300762	-	L1Md_F2	LINE	L1	chr13	8299142	8299144	-	ENSMUST00000223414.1,ENSMUSG00000113978.1	Gm48260	ENSMUSG00000113978.1	ENSMUST00000223414.1	processed_pseudogene	chr13:8295315-8299143
chr13	8552991	8553048	+	(CA)n	Simple_repeat	Simple_repeat	chr13	8553019	8553021	+	ENSMUST00000220604.1,ENSMUSG00000113742.1	Gm48262	ENSMUSG00000113742.1	ENSMUST00000220604.1	TEC	chr13:8553020-8557635
chr13	8758302	8758378	-	LTR82A	LTR	ERVL	chr13	8758328	8758330	+	ENSMUST00000223148.1,ENSMUSG00000052551.16	Adarb2	ENSMUSG00000052551.16	ENSMUST00000223148.1	protein_coding	chr13:8758329-8758872
chr13	8834342	8834503	+	L1MC4	LINE	L1	chr13	8834371	8834373	-	ENSMUST00000220930.1,ENSMUSG00000114094.1	Gm48375	ENSMUSG00000114094.1	ENSMUST00000220930.1	TEC	chr13:8833099-8834372
chr13	8886999	8887072	-	PB1D9	SINE	Alu	chr13	8887068	8887070	+	ENSMUST00000176851.1,ENSMUSG00000058258.14	Idi1	ENSMUSG00000058258.14	ENSMUST00000176851.1	protein_coding	chr13:8887069-8890445
chr13	8945015	8945069	-	MTD	LTR	ERVL-MaLR	chr13	8945044	8945046	+	ENSMUST00000104296.1,ENSMUSG00000077484.1	Gm25274	ENSMUSG00000077484.1	ENSMUST00000104296.1	snoRNA	chr13:8945045-8945179
chr13	8950030	8950084	+	MTD	LTR	ERVL-MaLR	chr13	8950052	8950054	-	ENSMUST00000103976.1,ENSMUSG00000096771.1	Gm22115	ENSMUSG00000096771.1	ENSMUST00000103976.1	snoRNA	chr13:8949921-8950053
chr13	8956041	8956095	+	MTD	LTR	ERVL-MaLR	chr13	8956063	8956065	-	ENSMUST00000104108.1,ENSMUSG00000095414.1	Gm23923	ENSMUSG00000095414.1	ENSMUST00000104108.1	snoRNA	chr13:8955932-8956064
chr13	9076196	9076925	+	Lx4B	LINE	L1	chr13	9076450	9076452	-	ENSMUST00000221672.1,ENSMUSG00000113543.1	Gm36264	ENSMUSG00000113543.1	ENSMUST00000221672.1	lincRNA	chr13:9001432-9076451
chr13	9076196	9076925	+	Lx4B	LINE	L1	chr13	9076450	9076452	-	ENSMUST00000221989.1,ENSMUSG00000113543.1	Gm36264	ENSMUSG00000113543.1	ENSMUST00000221989.1	lincRNA	chr13:9001657-9076451
chr13	9321258	9321443	+	CT-rich	Low_complexity	Low_complexity	chr13	9321426	9321428	+	ENSMUST00000221638.1,ENSMUSG00000113922.1	Gm48887	ENSMUSG00000113922.1	ENSMUST00000221638.1	TEC	chr13:9321427-9322979
chr13	9321401	9321563	+	T-rich	Low_complexity	Low_complexity	chr13	9321426	9321428	+	ENSMUST00000221638.1,ENSMUSG00000113922.1	Gm48887	ENSMUSG00000113922.1	ENSMUST00000221638.1	TEC	chr13:9321427-9322979
chr13	9328528	9328664	+	B1_Mm	SINE	Alu	chr13	9328629	9328631	+	ENSMUST00000220775.1,ENSMUSG00000113984.1	Gm48890	ENSMUSG00000113984.1	ENSMUST00000220775.1	TEC	chr13:9328630-9330247
chr13	9445894	9446164	+	B4	SINE	B4	chr13	9445899	9445901	+	ENSMUST00000223468.1,ENSMUSG00000112948.1	Gm48871	ENSMUSG00000112948.1	ENSMUST00000223468.1	TEC	chr13:9445900-9448419
chr13	9557493	9557888	-	MTA_Mm	LTR	ERVL-MaLR	chr13	9557860	9557862	+	ENSMUST00000221729.1,ENSMUSG00000113905.1	Gm48872	ENSMUSG00000113905.1	ENSMUST00000221729.1	TEC	chr13:9557861-9561989
chr13	9716051	9716138	+	(CATG)n	Simple_repeat	Simple_repeat	chr13	9716056	9716058	-	ENSMUST00000222148.1,ENSMUSG00000021156.17	Zmynd11	ENSMUSG00000021156.17	ENSMUST00000222148.1	protein_coding	chr13:9712232-9716057
chr13	9764445	9764489	+	GC_rich	Low_complexity	Low_complexity	chr13	9764487	9764489	-	ENSMUST00000110638.7,ENSMUSG00000021156.17	Zmynd11	ENSMUSG00000021156.17	ENSMUST00000110638.7	protein_coding	chr13:9684836-9764488
chr13	9764445	9764489	+	GC_rich	Low_complexity	Low_complexity	chr13	9764469	9764471	-	ENSMUST00000110635.7,ENSMUSG00000021156.17	Zmynd11	ENSMUSG00000021156.17	ENSMUST00000110635.7	protein_coding	chr13:9684841-9764470
chr13	9764445	9764489	+	GC_rich	Low_complexity	Low_complexity	chr13	9764453	9764455	-	ENSMUST00000146039.1,ENSMUSG00000021156.17	Zmynd11	ENSMUSG00000021156.17	ENSMUST00000146039.1	protein_coding	chr13:9710175-9764454
chr13	9764894	9764968	+	G-rich	Low_complexity	Low_complexity	chr13	9764955	9764957	-	ENSMUST00000110634.7,ENSMUSG00000021156.17	Zmynd11	ENSMUSG00000021156.17	ENSMUST00000110634.7	protein_coding	chr13:9685095-9764956
chr13	9764894	9764968	+	G-rich	Low_complexity	Low_complexity	chr13	9764936	9764938	-	ENSMUST00000128658.7,ENSMUSG00000021156.17	Zmynd11	ENSMUSG00000021156.17	ENSMUST00000128658.7	protein_coding	chr13:9697644-9764937
chr13	9832020	9838665	-	L1Md_T	LINE	L1	chr13	9834524	9834526	-	ENSMUST00000157984.1,ENSMUSG00000088609.1	Gm24187	ENSMUSG00000088609.1	ENSMUST00000157984.1	miRNA	chr13:9834469-9834525
chr13	9892909	9893736	+	L1Md_A	LINE	L1	chr13	9892909	9892911	+	ENSMUST00000221304.1,ENSMUSG00000113146.1	Gm47406	ENSMUSG00000113146.1	ENSMUST00000221304.1	processed_pseudogene	chr13:9892910-9894050
chr13	10051828	10051870	+	(CA)n	Simple_repeat	Simple_repeat	chr13	10051847	10051849	-	ENSMUST00000222830.1,ENSMUSG00000113502.1	Gm47411	ENSMUSG00000113502.1	ENSMUST00000222830.1	TEC	chr13:10048667-10051848
chr13	10070825	10070877	+	(TG)n	Simple_repeat	Simple_repeat	chr13	10070865	10070867	-	ENSMUST00000221804.1,ENSMUSG00000113680.1	Gm47405	ENSMUSG00000113680.1	ENSMUST00000221804.1	sense_intronic	chr13:10064758-10070866
chr13	10180614	10181107	-	MT2_Mm	LTR	ERVL	chr13	10180806	10180808	-	ENSMUST00000222625.1,ENSMUSG00000113261.1	Gm47404	ENSMUSG00000113261.1	ENSMUST00000222625.1	sense_intronic	chr13:10175784-10180807
chr13	10517469	10517864	+	MTA_Mm	LTR	ERVL-MaLR	chr13	10517686	10517688	+	ENSMUST00000221705.1,ENSMUSG00000113758.1	Gm47407	ENSMUSG00000113758.1	ENSMUST00000221705.1	lincRNA	chr13:10517687-10538811
chr13	10554571	10554838	+	MTE2a	LTR	ERVL-MaLR	chr13	10554658	10554660	+	ENSMUST00000222066.1,ENSMUSG00000097009.2	Gm26861	ENSMUSG00000097009.2	ENSMUST00000222066.1	antisense	chr13:10554659-10676748
chr13	10554571	10554838	+	MTE2a	LTR	ERVL-MaLR	chr13	10554672	10554674	+	ENSMUST00000221649.1,ENSMUSG00000097009.2	Gm26861	ENSMUSG00000097009.2	ENSMUST00000221649.1	antisense	chr13:10554673-10677273
chr13	10554571	10554838	+	MTE2a	LTR	ERVL-MaLR	chr13	10554672	10554674	+	ENSMUST00000222633.1,ENSMUSG00000097009.2	Gm26861	ENSMUSG00000097009.2	ENSMUST00000222633.1	antisense	chr13:10554673-10739863
chr13	10554571	10554838	+	MTE2a	LTR	ERVL-MaLR	chr13	10554686	10554688	+	ENSMUST00000223253.1,ENSMUSG00000097009.2	Gm26861	ENSMUSG00000097009.2	ENSMUST00000223253.1	antisense	chr13:10554687-10655514
chr13	10699305	10705480	-	L1Md_A	LINE	L1	chr13	10700160	10700162	+	ENSMUST00000221855.1,ENSMUSG00000114134.1	Gm47408	ENSMUSG00000114134.1	ENSMUST00000221855.1	lincRNA	chr13:10700161-10830778
chr13	10974117	10974615	+	MT2_Mm	LTR	ERVL	chr13	10974422	10974424	+	ENSMUST00000221075.1,ENSMUSG00000113673.1	Gm47486	ENSMUSG00000113673.1	ENSMUST00000221075.1	lincRNA	chr13:10974423-10979945
chr13	11821668	11822363	-	L1Md_F2	LINE	L1	chr13	11821733	11821735	-	ENSMUST00000221204.1,ENSMUSG00000113269.1	Gm47494	ENSMUSG00000113269.1	ENSMUST00000221204.1	TEC	chr13:11818248-11821734
chr13	12160722	12160767	+	(GAAA)n	Simple_repeat	Simple_repeat	chr13	12160753	12160755	+	ENSMUST00000220496.1,ENSMUSG00000113347.1	Gm47323	ENSMUSG00000113347.1	ENSMUST00000220496.1	processed_pseudogene	chr13:12160754-12160964
chr13	12274089	12274203	-	B1F2	SINE	Alu	chr13	12274095	12274097	-	ENSMUST00000222034.1,ENSMUSG00000052374.16	Actn2	ENSMUSG00000052374.16	ENSMUST00000222034.1	protein_coding	chr13:12269478-12274096
chr13	12448677	12448747	+	(CA)n	Simple_repeat	Simple_repeat	chr13	12448735	12448737	-	ENSMUST00000133143.1,ENSMUSG00000057554.13	Lgals8	ENSMUSG00000057554.13	ENSMUST00000133143.1	protein_coding	chr13:12439417-12448736
chr13	12456501	12456577	-	ID_B1	SINE	B4	chr13	12456522	12456524	-	ENSMUST00000155871.7,ENSMUSG00000057554.13	Lgals8	ENSMUSG00000057554.13	ENSMUST00000155871.7	protein_coding	chr13:12451417-12456523
chr13	12461638	12461831	+	ID_B1	SINE	B4	chr13	12461737	12461739	-	ENSMUST00000099821.9,ENSMUSG00000057554.13	Lgals8	ENSMUSG00000057554.13	ENSMUST00000099821.9	protein_coding	chr13:12439417-12461738
chr13	12798298	12798610	-	Lx8b	LINE	L1	chr13	12798373	12798375	-	ENSMUST00000223098.1,ENSMUSG00000056457.6	Prl2c3	ENSMUSG00000056457.6	ENSMUST00000223098.1	protein_coding	chr13:12792113-12798374
chr13	12873689	12873830	-	RMER15	LTR	ERVL	chr13	12873783	12873785	-	ENSMUST00000222702.1,ENSMUSG00000113117.1	Gm2544	ENSMUSG00000113117.1	ENSMUST00000222702.1	unprocessed_pseudogene	chr13:12866723-12873784
chr13	13034643	13034967	+	IAPLTR3	LTR	ERVK	chr13	13034857	13034859	+	ENSMUST00000223084.1,ENSMUSG00000113049.1	Gm48544	ENSMUSG00000113049.1	ENSMUST00000223084.1	lincRNA	chr13:13034858-13038936
chr13	13081215	13081339	+	MTE-int	LTR	ERVL-MaLR	chr13	13081310	13081312	-	ENSMUST00000221735.1,ENSMUSG00000113567.1	Gm32300	ENSMUSG00000113567.1	ENSMUST00000221735.1	unprocessed_pseudogene	chr13:13078702-13081311
chr13	13204829	13204970	+	RMER15	LTR	ERVL	chr13	13204875	13204877	+	ENSMUST00000220605.1,ENSMUSG00000113371.1	Gm48588	ENSMUSG00000113371.1	ENSMUST00000220605.1	unprocessed_pseudogene	chr13:13204876-13207550
chr13	13298242	13298344	-	U6	snRNA	snRNA	chr13	13298341	13298343	-	ENSMUST00000157363.1,ENSMUSG00000096198.1	Gm26133	ENSMUSG00000096198.1	ENSMUST00000157363.1	snRNA	chr13:13298243-13298342
chr13	13514627	13514749	+	L1MB4	LINE	L1	chr13	13514737	13514739	+	ENSMUST00000221249.1,ENSMUSG00000114068.1	Gm48783	ENSMUSG00000114068.1	ENSMUST00000221249.1	TEC	chr13:13514738-13515817
chr13	13819076	13819471	+	MTA_Mm	LTR	ERVL-MaLR	chr13	13819278	13819280	+	ENSMUST00000220727.1,ENSMUSG00000021303.14	Gng4	ENSMUSG00000021303.14	ENSMUST00000220727.1	protein_coding	chr13:13819279-13825458
chr13	13862223	13862746	-	RMER17B	LTR	ERVK	chr13	13862533	13862535	+	ENSMUST00000223012.1,ENSMUSG00000113811.1	Gm47882	ENSMUSG00000113811.1	ENSMUST00000223012.1	lincRNA	chr13:13862534-13893979
chr13	13971103	13971670	-	MT2B2	LTR	ERVL	chr13	13971336	13971338	-	ENSMUST00000222015.1,ENSMUSG00000096192.2	Gm18856	ENSMUSG00000096192.2	ENSMUST00000222015.1	transcribed_processed_pseudogene	chr13:13965739-13971337
chr13	13971103	13971670	-	MT2B2	LTR	ERVL	chr13	13971308	13971310	-	ENSMUST00000221021.1,ENSMUSG00000096192.2	Gm18856	ENSMUSG00000096192.2	ENSMUST00000221021.1	transcribed_processed_pseudogene	chr13:13966765-13971309
chr13	14087438	14087543	+	U6	snRNA	snRNA	chr13	14087438	14087440	+	ENSMUST00000082719.1,ENSMUSG00000064653.1	Gm26129	ENSMUSG00000064653.1	ENSMUST00000082719.1	snRNA	chr13:14087439-14087545
chr13	14118740	14118856	-	5S	rRNA	rRNA	chr13	14118854	14118856	-	ENSMUST00000104614.1,ENSMUSG00000077802.1	n-R5s52	ENSMUSG00000077802.1	ENSMUST00000104614.1	rRNA	chr13:14118743-14118855
chr13	15375296	15375629	+	MLTR11A	LTR	ERVK	chr13	15375623	15375625	+	ENSMUST00000222267.1,ENSMUSG00000113410.1	Gm20043	ENSMUSG00000113410.1	ENSMUST00000222267.1	lincRNA	chr13:15375624-15413100
chr13	15769768	15770137	-	MTD	LTR	ERVL-MaLR	chr13	15770119	15770121	-	ENSMUST00000222341.1,ENSMUSG00000113309.1	Gm48408	ENSMUSG00000113309.1	ENSMUST00000222341.1	TEC	chr13:15768990-15770120
chr13	15817283	15817384	+	L1_Rod	LINE	L1	chr13	15817315	15817317	+	ENSMUST00000222059.1,ENSMUSG00000113290.1	A530058O07Rik	ENSMUSG00000113290.1	ENSMUST00000222059.1	TEC	chr13:15817316-15820679
chr13	15926466	15927150	-	L1Md_Gf	LINE	L1	chr13	15926666	15926668	-	ENSMUST00000221744.1,ENSMUSG00000113701.1	B230303A05Rik	ENSMUSG00000113701.1	ENSMUST00000221744.1	transcribed_processed_pseudogene	chr13:15915502-15926667
chr13	16032166	16032278	-	MTE2a	LTR	ERVL-MaLR	chr13	16032274	16032276	-	ENSMUST00000223477.1,ENSMUSG00000113224.1	Gm48444	ENSMUSG00000113224.1	ENSMUST00000223477.1	antisense	chr13:16025382-16032275
chr13	16041045	16041152	-	U6	snRNA	snRNA	chr13	16041151	16041153	-	ENSMUST00000082988.2,ENSMUSG00000095584.1	Gm22628	ENSMUSG00000095584.1	ENSMUST00000082988.2	snRNA	chr13:16041046-16041152
chr13	16372987	16373480	-	MT2_Mm	LTR	ERVL	chr13	16373179	16373181	-	ENSMUST00000221385.1,ENSMUSG00000113322.1	Gm48492	ENSMUSG00000113322.1	ENSMUST00000221385.1	lincRNA	chr13:16368944-16373180
chr13	16385236	16392061	-	L1Md_T	LINE	L1	chr13	16389758	16389760	-	ENSMUST00000222978.1,ENSMUSG00000113924.1	Gm48493	ENSMUSG00000113924.1	ENSMUST00000222978.1	processed_pseudogene	chr13:16385919-16389759
chr13	16385236	16392061	-	L1Md_T	LINE	L1	chr13	16390590	16390592	+	ENSMUST00000221232.1,ENSMUSG00000113232.1	Gm48494	ENSMUSG00000113232.1	ENSMUST00000221232.1	processed_pseudogene	chr13:16390591-16390854
chr13	16431759	16431839	+	B3A	SINE	B2	chr13	16431779	16431781	-	ENSMUST00000221425.1,ENSMUSG00000112969.1	Gm48496	ENSMUSG00000112969.1	ENSMUST00000221425.1	processed_pseudogene	chr13:16431525-16431780
chr13	16533107	16537846	+	Lx	LINE	L1	chr13	16533820	16533822	-	ENSMUST00000222545.1,ENSMUSG00000113972.1	Gm48497	ENSMUSG00000113972.1	ENSMUST00000222545.1	processed_pseudogene	chr13:16533539-16533821
chr13	16859240	16859472	-	7SK	RNA	RNA	chr13	16859471	16859473	-	ENSMUST00000157247.1,ENSMUSG00000087872.1	Gm26098	ENSMUSG00000087872.1	ENSMUST00000157247.1	misc_RNA	chr13:16859185-16859472
chr13	16939993	16945249	+	L1Md_T	LINE	L1	chr13	16943845	16943847	+	ENSMUST00000222334.1,ENSMUSG00000114114.1	Gm48499	ENSMUSG00000114114.1	ENSMUST00000222334.1	processed_pseudogene	chr13:16943846-16945569
chr13	17206020	17206127	+	U6	snRNA	snRNA	chr13	17206020	17206022	+	ENSMUST00000178071.1,ENSMUSG00000094754.1	Gm25020	ENSMUSG00000094754.1	ENSMUST00000178071.1	snRNA	chr13:17206021-17206127
chr13	17358610	17363819	+	L1Md_A	LINE	L1	chr13	17360293	17360295	+	ENSMUST00000222020.1,ENSMUSG00000113889.1	Gm48501	ENSMUSG00000113889.1	ENSMUST00000222020.1	processed_pseudogene	chr13:17360294-17364134
chr13	17440789	17440896	+	U6	snRNA	snRNA	chr13	17440789	17440791	+	ENSMUST00000179101.1,ENSMUSG00000094665.1	Gm24873	ENSMUSG00000094665.1	ENSMUST00000179101.1	snRNA	chr13:17440790-17440896
chr13	17739267	17739574	+	Lx5	LINE	L1	chr13	17739452	17739454	-	ENSMUST00000222359.1,ENSMUSG00000041297.8	Cdk13	ENSMUSG00000041297.8	ENSMUST00000222359.1	protein_coding	chr13:17719730-17739453
chr13	17757310	17757608	-	B4A	SINE	B4	chr13	17757324	17757326	-	ENSMUST00000220696.1,ENSMUSG00000113140.1	Gm48624	ENSMUSG00000113140.1	ENSMUST00000220696.1	TEC	chr13:17754516-17757325
chr13	17801299	17801416	-	L2b	LINE	L2	chr13	17801330	17801332	-	ENSMUST00000222800.1,ENSMUSG00000041297.8	Cdk13	ENSMUSG00000041297.8	ENSMUST00000222800.1	protein_coding	chr13:17717460-17801331
chr13	17809599	17809697	-	U6	snRNA	snRNA	chr13	17809696	17809698	-	ENSMUST00000083232.1,ENSMUSG00000095025.1	Gm24018	ENSMUSG00000095025.1	ENSMUST00000083232.1	snRNA	chr13:17809591-17809697
chr13	17932085	17932578	+	MT2_Mm	LTR	ERVL	chr13	17932385	17932387	+	ENSMUST00000221683.1,ENSMUSG00000113100.1	Gm48754	ENSMUSG00000113100.1	ENSMUST00000221683.1	antisense	chr13:17932386-17938434
chr13	17943944	17944007	+	GC_rich	Low_complexity	Low_complexity	chr13	17943948	17943950	-	ENSMUST00000223147.1,ENSMUSG00000008859.8	Rala	ENSMUSG00000008859.8	ENSMUST00000223147.1	protein_coding	chr13:17888593-17943949
chr13	17944232	17944262	+	GC_rich	Low_complexity	Low_complexity	chr13	17944238	17944240	-	ENSMUST00000009003.8,ENSMUSG00000008859.8	Rala	ENSMUSG00000008859.8	ENSMUST00000009003.8	protein_coding	chr13:17880571-17944239
chr13	17949814	17949922	+	B1_Mus1	SINE	Alu	chr13	17949907	17949909	+	ENSMUST00000222318.1,ENSMUSG00000113750.1	Gm5628	ENSMUSG00000113750.1	ENSMUST00000222318.1	processed_pseudogene	chr13:17949908-17950956
chr13	17951493	17952633	-	Lx8	LINE	L1	chr13	17951937	17951939	+	ENSMUST00000221298.1,ENSMUSG00000113688.1	A930027P06Rik	ENSMUSG00000113688.1	ENSMUST00000221298.1	TEC	chr13:17951938-17954912
chr13	17992529	17992619	-	RSINE1	SINE	B4	chr13	17992532	17992534	-	ENSMUST00000223489.1,ENSMUSG00000113030.1	Gm48778	ENSMUSG00000113030.1	ENSMUST00000223489.1	processed_transcript	chr13:17961150-17992533
chr13	18008151	18008643	-	MT2_Mm	LTR	ERVL	chr13	18008343	18008345	-	ENSMUST00000220739.1,ENSMUSG00000113847.1	Gm48799	ENSMUSG00000113847.1	ENSMUST00000220739.1	lincRNA	chr13:18002310-18008344
chr13	18095949	18096292	-	MT2B1	LTR	ERVL	chr13	18095953	18095955	-	ENSMUST00000221924.1,ENSMUSG00000113893.1	Gm48800	ENSMUSG00000113893.1	ENSMUST00000221924.1	processed_pseudogene	chr13:18094472-18095954
chr13	18645156	18645660	-	MT2_Mm	LTR	ERVL	chr13	18645348	18645350	-	ENSMUST00000221183.1,ENSMUSG00000114118.1	Gm48829	ENSMUSG00000114118.1	ENSMUST00000221183.1	lincRNA	chr13:18640257-18645349
chr13	18779679	18779933	-	MTC	LTR	ERVL-MaLR	chr13	18779842	18779844	+	ENSMUST00000222813.1,ENSMUSG00000041236.8	Vps41	ENSMUSG00000041236.8	ENSMUST00000222813.1	protein_coding	chr13:18779843-18827655
chr13	18922539	18922577	+	(TAA)n	Simple_repeat	Simple_repeat	chr13	18922576	18922578	+	ENSMUST00000158421.1,ENSMUSG00000089046.1	Gm26172	ENSMUSG00000089046.1	ENSMUST00000158421.1	snoRNA	chr13:18922577-18922710
chr13	18948287	18948364	+	CT-rich	Low_complexity	Low_complexity	chr13	18948350	18948352	+	ENSMUST00000200466.4,ENSMUSG00000021314.12	Amph	ENSMUSG00000021314.12	ENSMUST00000200466.4	protein_coding	chr13:18948351-19150912
chr13	18973459	18974920	+	Lx	LINE	L1	chr13	18973459	18973461	+	ENSMUST00000222229.1,ENSMUSG00000113993.1	Gm47659	ENSMUSG00000113993.1	ENSMUST00000222229.1	processed_pseudogene	chr13:18973460-18974141
chr13	19059294	19065765	-	L1Md_T	LINE	L1	chr13	19064816	19064818	+	ENSMUST00000222698.1,ENSMUSG00000021314.12	Amph	ENSMUSG00000021314.12	ENSMUST00000222698.1	protein_coding	chr13:19064817-19150912
chr13	19504186	19504614	-	Lx8	LINE	L1	chr13	19504366	19504368	-	ENSMUST00000221607.1,ENSMUSG00000114189.1	9330199G10Rik	ENSMUSG00000114189.1	ENSMUST00000221607.1	lincRNA	chr13:19462847-19504367
chr13	19504186	19504614	-	Lx8	LINE	L1	chr13	19504344	19504346	-	ENSMUST00000221601.1,ENSMUSG00000114189.1	9330199G10Rik	ENSMUSG00000114189.1	ENSMUST00000221601.1	lincRNA	chr13:19465769-19504345
chr13	19689328	19689678	-	MTE2b	LTR	ERVL-MaLR	chr13	19689563	19689565	-	ENSMUST00000221343.1,ENSMUSG00000041138.16	Nme8	ENSMUSG00000041138.16	ENSMUST00000221343.1	protein_coding	chr13:19645078-19689564
chr13	19689328	19689678	-	MTE2b	LTR	ERVL-MaLR	chr13	19689610	19689612	-	ENSMUST00000144820.2,ENSMUSG00000041138.16	Nme8	ENSMUSG00000041138.16	ENSMUST00000144820.2	protein_coding	chr13:19645078-19689611
chr13	20111444	20111820	-	ORR1F	LTR	ERVL-MaLR	chr13	20111511	20111513	+	ENSMUST00000180626.1,ENSMUSG00000041112.17	Elmo1	ENSMUSG00000041112.17	ENSMUST00000180626.1	protein_coding	chr13:20111512-20342888
chr13	20499781	20499997	-	Lx9	LINE	L1	chr13	20499887	20499889	+	ENSMUST00000222966.1,ENSMUSG00000113183.1	Gm47664	ENSMUSG00000113183.1	ENSMUST00000222966.1	sense_intronic	chr13:20499888-20501227
chr13	21010436	21010757	-	MLT1A0	LTR	ERVL-MaLR	chr13	21010632	21010634	+	ENSMUST00000222135.1,ENSMUSG00000021322.8	Aoah	ENSMUSG00000021322.8	ENSMUST00000222135.1	protein_coding	chr13:21010633-21036617
chr13	21187406	21187559	+	B3A	SINE	B2	chr13	21187555	21187557	-	ENSMUST00000220690.1,ENSMUSG00000113104.1	Gm47806	ENSMUSG00000113104.1	ENSMUST00000220690.1	antisense	chr13:21177187-21187556
chr13	21486364	21486439	-	RLTR25A	LTR	ERVK	chr13	21486400	21486402	-	ENSMUST00000157938.1,ENSMUSG00000088563.1	Gm23779	ENSMUSG00000088563.1	ENSMUST00000157938.1	snRNA	chr13:21486338-21486401
chr13	21501410	21501468	+	L2c	LINE	L2	chr13	21501417	21501419	-	ENSMUST00000044043.2,ENSMUSG00000079941.1	Gm11273	ENSMUSG00000079941.1	ENSMUST00000044043.2	protein_coding	chr13:21501029-21501418
chr13	21924934	21925016	-	tRNA-Ser-TCA_	tRNA	tRNA	chr13	21925015	21925017	-	ENSMUST00000196554.1,ENSMUSG00000105839.1	Gm44456	ENSMUSG00000105839.1	ENSMUST00000196554.1	miRNA	chr13:21924928-21925016
chr13	22017371	22017545	-	B3A	SINE	B2	chr13	22017505	22017507	+	ENSMUST00000224688.1,ENSMUSG00000085827.8	Gm11290	ENSMUSG00000085827.8	ENSMUST00000224688.1	lincRNA	chr13:22017506-22020738
chr13	22083787	22083976	+	MusHAL1	LINE	L1	chr13	22083786	22083788	-	ENSMUST00000118443.1,ENSMUSG00000084072.1	Gm11285	ENSMUSG00000084072.1	ENSMUST00000118443.1	unprocessed_pseudogene	chr13:22083466-22083787
chr13	22165807	22166215	+	ERVB7_3-LTR_MM	LTR	ERVK	chr13	22165806	22165808	-	ENSMUST00000121910.1,ENSMUSG00000083319.1	Gm11284	ENSMUSG00000083319.1	ENSMUST00000121910.1	processed_pseudogene	chr13:22163886-22165807
chr13	22204348	22204743	-	MTA_Mm	LTR	ERVL-MaLR	chr13	22204674	22204676	-	ENSMUST00000175556.1,ENSMUSG00000096817.1	Gm25084	ENSMUSG00000096817.1	ENSMUST00000175556.1	miRNA	chr13:22204575-22204675
chr13	22212192	22212587	-	MTA_Mm	LTR	ERVL-MaLR	chr13	22212518	22212520	-	ENSMUST00000175306.1,ENSMUSG00000095684.1	Gm23282	ENSMUSG00000095684.1	ENSMUST00000175306.1	miRNA	chr13:22212419-22212519
chr13	22370434	22370565	-	RMER17A-int	LTR	ERVK	chr13	22370560	22370562	+	ENSMUST00000224526.1,ENSMUSG00000114666.1	Vmn1r-ps101	ENSMUSG00000114666.1	ENSMUST00000224526.1	unprocessed_pseudogene	chr13:22370561-22370825
chr13	22390109	22390397	+	Lx6	LINE	L1	chr13	22390372	22390374	+	ENSMUST00000226157.1,ENSMUSG00000101073.2	Vmn1r200	ENSMUSG00000101073.2	ENSMUST00000226157.1	protein_coding	chr13:22390373-22400052
chr13	22390109	22390397	+	Lx6	LINE	L1	chr13	22390372	22390374	+	ENSMUST00000227326.1,ENSMUSG00000101073.2	Vmn1r200	ENSMUSG00000101073.2	ENSMUST00000227326.1	protein_coding	chr13:22390373-22400052
chr13	22390109	22390397	+	Lx6	LINE	L1	chr13	22390372	22390374	+	ENSMUST00000226901.1,ENSMUSG00000101073.2	Vmn1r200	ENSMUSG00000101073.2	ENSMUST00000226901.1	protein_coding	chr13:22390373-22400052
chr13	22390109	22390397	+	Lx6	LINE	L1	chr13	22390372	22390374	+	ENSMUST00000228726.1,ENSMUSG00000101073.2	Vmn1r200	ENSMUSG00000101073.2	ENSMUST00000228726.1	protein_coding	chr13:22390373-22400052
chr13	22480551	22480682	-	L1MA7	LINE	L1	chr13	22480630	22480632	+	ENSMUST00000120587.1,ENSMUSG00000081717.1	Vmn1r-ps106	ENSMUSG00000081717.1	ENSMUST00000120587.1	unprocessed_pseudogene	chr13:22480631-22483043
chr13	22675403	22675660	+	L1_Mur2	LINE	L1	chr13	22675659	22675661	+	ENSMUST00000121088.1,ENSMUSG00000082178.1	Gm11307	ENSMUSG00000082178.1	ENSMUST00000121088.1	processed_pseudogene	chr13:22675660-22676969
chr13	22776668	22777413	-	Lx6	LINE	L1	chr13	22777399	22777401	-	ENSMUST00000227136.1,ENSMUSG00000071493.5	Vmn1r208	ENSMUSG00000071493.5	ENSMUST00000227136.1	protein_coding	chr13:22771474-22777400
chr13	22884178	22884215	+	(CAAA)n	Simple_repeat	Simple_repeat	chr13	22884204	22884206	-	ENSMUST00000226881.1,ENSMUSG00000071490.4	Vmn1r212	ENSMUSG00000071490.4	ENSMUST00000226881.1	protein_coding	chr13:22883042-22884205
chr13	22884178	22884215	+	(CAAA)n	Simple_repeat	Simple_repeat	chr13	22884204	22884206	-	ENSMUST00000095960.4,ENSMUSG00000071490.4	Vmn1r212	ENSMUSG00000071490.4	ENSMUST00000095960.4	protein_coding	chr13:22883042-22884205
chr13	22996480	22996508	+	(CAAA)n	Simple_repeat	Simple_repeat	chr13	22996499	22996501	-	ENSMUST00000110449.2,ENSMUSG00000079064.2	Vmn1r-ps123	ENSMUSG00000079064.2	ENSMUST00000110449.2	unprocessed_pseudogene	chr13:22996264-22996500
chr13	23010368	23011391	+	RLTR13D5	LTR	ERVK	chr13	23011248	23011250	+	ENSMUST00000076897.1,ENSMUSG00000060024.2	Vmn1r213	ENSMUSG00000060024.2	ENSMUST00000076897.1	protein_coding	chr13:23011249-23012403
chr13	23104226	23104314	+	ORR1D1	LTR	ERVL-MaLR	chr13	23104295	23104297	+	ENSMUST00000118007.1,ENSMUSG00000081912.1	Vmn1r-ps127	ENSMUSG00000081912.1	ENSMUST00000118007.1	transcribed_unprocessed_pseudogene	chr13:23104296-23104773
chr13	23266314	23267225	+	MMERVK10C-int	LTR	ERVK	chr13	23266533	23266535	+	ENSMUST00000119764.1,ENSMUSG00000082593.1	Gm11331	ENSMUSG00000082593.1	ENSMUST00000119764.1	unprocessed_pseudogene	chr13:23266534-23266821
chr13	23278066	23278397	-	RLTR10B	LTR	ERVK	chr13	23278349	23278351	+	ENSMUST00000156977.1,ENSMUSG00000085122.1	4933404K08Rik	ENSMUSG00000085122.1	ENSMUST00000156977.1	lincRNA	chr13:23278350-23282267
chr13	23363167	23363371	+	B3	SINE	B2	chr13	23363209	23363211	-	ENSMUST00000224779.1,ENSMUSG00000046351.11	Zfp322a	ENSMUSG00000046351.11	ENSMUST00000224779.1	protein_coding	chr13:23357634-23363210
chr13	23663021	23663114	+	U6	snRNA	snRNA	chr13	23663020	23663022	+	ENSMUST00000122804.1,ENSMUSG00000084753.1	Gm22452	ENSMUSG00000084753.1	ENSMUST00000122804.1	snRNA	chr13:23663021-23663124
chr13	23769698	23770093	+	MTA_Mm	LTR	ERVL-MaLR	chr13	23769912	23769914	+	ENSMUST00000226039.1,ENSMUSG00000064140.3	Trim38	ENSMUSG00000064140.3	ENSMUST00000226039.1	protein_coding	chr13:23769913-23791528
chr13	23867743	23867910	+	B3A	SINE	B2	chr13	23867749	23867751	+	ENSMUST00000130211.7,ENSMUSG00000021335.13	Slc17a1	ENSMUSG00000021335.13	ENSMUST00000130211.7	protein_coding	chr13:23867750-23874759
chr13	23956777	23956846	+	ID4_	SINE	ID	chr13	23956808	23956810	+	ENSMUST00000154766.1,ENSMUSG00000087603.1	Gm11339	ENSMUSG00000087603.1	ENSMUST00000154766.1	antisense	chr13:23956809-23966175
chr13	24280772	24280802	+	(A)n	Simple_repeat	Simple_repeat	chr13	24280794	24280796	-	ENSMUST00000072889.11,ENSMUSG00000021338.17	Carmil1	ENSMUSG00000021338.17	ENSMUST00000072889.11	protein_coding	chr13:24012659-24280795
chr13	24280772	24280802	+	(A)n	Simple_repeat	Simple_repeat	chr13	24280789	24280791	-	ENSMUST00000125420.7,ENSMUSG00000021338.17	Carmil1	ENSMUSG00000021338.17	ENSMUST00000125420.7	protein_coding	chr13:24137757-24280790
chr13	24337360	24337481	+	ID_B1	SINE	B4	chr13	24337363	24337365	-	ENSMUST00000148981.2,ENSMUSG00000084788.2	Gm11342	ENSMUSG00000084788.2	ENSMUST00000148981.2	antisense	chr13:24336269-24337364
chr13	24486662	24486766	-	U6	snRNA	snRNA	chr13	24486763	24486765	-	ENSMUST00000158788.1,ENSMUSG00000089413.1	Gm22013	ENSMUSG00000089413.1	ENSMUST00000158788.1	snRNA	chr13:24486662-24486764
chr13	24638599	24638725	+	C-rich	Low_complexity	Low_complexity	chr13	24638647	24638649	+	ENSMUST00000110384.8,ENSMUSG00000036006.19	Ripor2	ENSMUSG00000036006.19	ENSMUST00000110384.8	protein_coding	chr13:24638648-24733816
chr13	24638599	24638725	+	C-rich	Low_complexity	Low_complexity	chr13	24638649	24638651	+	ENSMUST00000177298.7,ENSMUSG00000036006.19	Ripor2	ENSMUSG00000036006.19	ENSMUST00000177298.7	protein_coding	chr13:24638650-24672005
chr13	24638599	24638725	+	C-rich	Low_complexity	Low_complexity	chr13	24638683	24638685	+	ENSMUST00000058009.15,ENSMUSG00000036006.19	Ripor2	ENSMUSG00000036006.19	ENSMUST00000058009.15	protein_coding	chr13:24638684-24697500
chr13	24638599	24638725	+	C-rich	Low_complexity	Low_complexity	chr13	24638695	24638697	+	ENSMUST00000038477.6,ENSMUSG00000036006.19	Ripor2	ENSMUSG00000036006.19	ENSMUST00000038477.6	protein_coding	chr13:24638696-24706001
chr13	24638599	24638725	+	C-rich	Low_complexity	Low_complexity	chr13	24638712	24638714	+	ENSMUST00000138547.7,ENSMUSG00000036006.19	Ripor2	ENSMUSG00000036006.19	ENSMUST00000138547.7	protein_coding	chr13:24638713-24695725
chr13	24687741	24687935	+	B4A	SINE	B4	chr13	24687799	24687801	+	ENSMUST00000175986.1,ENSMUSG00000036006.19	Ripor2	ENSMUSG00000036006.19	ENSMUST00000175986.1	protein_coding	chr13:24687800-24694059
chr13	24831531	24831564	+	(CCCCCT)n	Simple_repeat	Simple_repeat	chr13	24831539	24831541	-	ENSMUST00000224839.1,ENSMUSG00000006717.7	Acot13	ENSMUSG00000006717.7	ENSMUST00000224839.1	protein_coding	chr13:24820814-24831540
chr13	24892517	24893294	-	RLTR13D3A1	LTR	ERVK	chr13	24893080	24893082	+	ENSMUST00000171262.1,ENSMUSG00000006711.15	D130043K22Rik	ENSMUSG00000006711.15	ENSMUST00000171262.1	protein_coding	chr13:24893081-24899848
chr13	24905458	24905784	+	ORR1F	LTR	ERVL-MaLR	chr13	24905592	24905594	+	ENSMUST00000151220.1,ENSMUSG00000086796.2	4932702P03Rik	ENSMUSG00000086796.2	ENSMUST00000151220.1	antisense	chr13:24905593-24914272
chr13	24905458	24905784	+	ORR1F	LTR	ERVL-MaLR	chr13	24905595	24905597	+	ENSMUST00000138447.1,ENSMUSG00000086796.2	4932702P03Rik	ENSMUSG00000086796.2	ENSMUST00000138447.1	antisense	chr13:24905596-24907280
chr13	24905458	24905784	+	ORR1F	LTR	ERVL-MaLR	chr13	24905619	24905621	+	ENSMUST00000225028.1,ENSMUSG00000086796.2	4932702P03Rik	ENSMUSG00000086796.2	ENSMUST00000225028.1	antisense	chr13:24905620-24911780
chr13	24937645	24937687	+	GC_rich	Low_complexity	Low_complexity	chr13	24937660	24937662	-	ENSMUST00000037615.6,ENSMUSG00000035936.6	Aldh5a1	ENSMUSG00000035936.6	ENSMUST00000037615.6	protein_coding	chr13:24907579-24937661
chr13	25029703	25036193	-	L1Md_T	LINE	L1	chr13	25035058	25035060	+	ENSMUST00000224353.1,ENSMUSG00000114228.1	Gm47605	ENSMUSG00000114228.1	ENSMUST00000224353.1	processed_pseudogene	chr13:25035059-25035328
chr13	25270501	25270649	+	B1_Mur4	SINE	Alu	chr13	25270501	25270503	-	ENSMUST00000126348.1,ENSMUSG00000048978.14	Nrsn1	ENSMUSG00000048978.14	ENSMUST00000126348.1	protein_coding	chr13:25270035-25270502
chr13	25966311	25966375	+	CT-rich	Low_complexity	Low_complexity	chr13	25966315	25966317	-	ENSMUST00000139335.2,ENSMUSG00000086531.2	Gm11351	ENSMUSG00000086531.2	ENSMUST00000139335.2	lincRNA	chr13:25921033-25966316
chr13	25986175	25986309	-	B1F	SINE	Alu	chr13	25986292	25986294	-	ENSMUST00000225724.1,ENSMUSG00000086531.2	Gm11351	ENSMUSG00000086531.2	ENSMUST00000225724.1	lincRNA	chr13:25922436-25986293
chr13	26312258	26313191	+	RMER17B2	LTR	ERVK	chr13	26312405	26312407	-	ENSMUST00000154703.2,ENSMUSG00000084811.2	1700092E19Rik	ENSMUSG00000084811.2	ENSMUST00000154703.2	lincRNA	chr13:26283150-26312406
chr13	26312258	26313191	+	RMER17B2	LTR	ERVK	chr13	26312346	26312348	-	ENSMUST00000123438.1,ENSMUSG00000084811.2	1700092E19Rik	ENSMUSG00000084811.2	ENSMUST00000123438.1	lincRNA	chr13:26305750-26312347
chr13	27121714	27121815	+	RMER15	LTR	ERVL	chr13	27121741	27121743	+	ENSMUST00000164964.3,ENSMUSG00000062737.13	Prl3d2	ENSMUSG00000062737.13	ENSMUST00000164964.3	protein_coding	chr13:27121742-27127418
chr13	27156809	27156910	+	RMER15	LTR	ERVL	chr13	27156836	27156838	+	ENSMUST00000223958.1,ENSMUSG00000062201.4	Prl3d3	ENSMUSG00000062201.4	ENSMUST00000223958.1	protein_coding	chr13:27156837-27162456
chr13	27196650	27196827	+	RMER15	LTR	ERVL	chr13	27196658	27196660	+	ENSMUST00000018066.12,ENSMUSG00000017922.14	Prl3c1	ENSMUSG00000017922.14	ENSMUST00000018066.12	protein_coding	chr13:27196659-27203749
chr13	27198481	27199104	-	RMER17A2	LTR	ERVK	chr13	27198902	27198904	+	ENSMUST00000110364.8,ENSMUSG00000017922.14	Prl3c1	ENSMUSG00000017922.14	ENSMUST00000110364.8	protein_coding	chr13:27198903-27203747
chr13	27849355	27849574	+	RMER15	LTR	ERVL	chr13	27849401	27849403	+	ENSMUST00000054932.12,ENSMUSG00000062551.13	Prl2c1	ENSMUSG00000062551.13	ENSMUST00000054932.12	protein_coding	chr13:27849402-27857683
chr13	27874086	27874188	+	U6	snRNA	snRNA	chr13	27874088	27874090	+	ENSMUST00000158902.1,ENSMUSG00000095744.1	Gm22476	ENSMUSG00000095744.1	ENSMUST00000158902.1	snRNA	chr13:27874089-27874188
chr13	28898489	28898693	+	ID_B1	SINE	B4	chr13	28898675	28898677	-	ENSMUST00000222648.1,ENSMUSG00000113352.1	Gm34639	ENSMUSG00000113352.1	ENSMUST00000222648.1	lincRNA	chr13:28889458-28898676
chr13	29016229	29016294	+	(CGTG)n	Simple_repeat	Simple_repeat	chr13	29016292	29016294	+	ENSMUST00000140415.7,ENSMUSG00000086363.7	A330102I10Rik	ENSMUSG00000086363.7	ENSMUST00000140415.7	lincRNA	chr13:29016293-29028797
chr13	29984165	29984293	+	G-rich	Low_complexity	Low_complexity	chr13	29984240	29984242	-	ENSMUST00000146092.2,ENSMUSG00000016477.18	E2f3	ENSMUSG00000016477.18	ENSMUST00000146092.2	protein_coding	chr13:29918701-29984241
chr13	30098408	30098777	-	ORR1E	LTR	ERVL-MaLR	chr13	30098492	30098494	+	ENSMUST00000220600.1,ENSMUSG00000113366.1	Gm47259	ENSMUSG00000113366.1	ENSMUST00000220600.1	TEC	chr13:30098493-30102042
chr13	30370127	30370466	+	IAPLTR1a_Mm	LTR	ERVK	chr13	30370358	30370360	+	ENSMUST00000222575.1,ENSMUSG00000113424.1	Gm48161	ENSMUSG00000113424.1	ENSMUST00000222575.1	sense_intronic	chr13:30370359-30377183
chr13	30660052	30660084	+	(CCCG)n	Simple_repeat	Simple_repeat	chr13	30660060	30660062	+	ENSMUST00000110310.8,ENSMUSG00000069255.13	Dusp22	ENSMUSG00000069255.13	ENSMUST00000110310.8	protein_coding	chr13:30660061-30707691
chr13	30660052	30660084	+	(CCCG)n	Simple_repeat	Simple_repeat	chr13	30660071	30660073	+	ENSMUST00000220748.1,ENSMUSG00000069255.13	Dusp22	ENSMUSG00000069255.13	ENSMUST00000220748.1	protein_coding	chr13:30660072-30708015
chr13	30660052	30660084	+	(CCCG)n	Simple_repeat	Simple_repeat	chr13	30660071	30660073	+	ENSMUST00000221725.1,ENSMUSG00000069255.13	Dusp22	ENSMUSG00000069255.13	ENSMUST00000221725.1	protein_coding	chr13:30660072-30711231
chr13	32758201	32758309	+	U6	snRNA	snRNA	chr13	32758201	32758203	+	ENSMUST00000183530.1,ENSMUSG00000098788.1	Gm27342	ENSMUSG00000098788.1	ENSMUST00000183530.1	snRNA	chr13:32758202-32758310
chr13	33569192	33569744	-	RLTR48A	LTR	ERV1	chr13	33569316	33569318	-	ENSMUST00000222963.1,ENSMUSG00000112963.1	Gm6093	ENSMUSG00000112963.1	ENSMUST00000222963.1	lincRNA	chr13:33562486-33569317
chr13	33686058	33686590	-	MusHAL1	LINE	L1	chr13	33686456	33686458	+	ENSMUST00000121407.1,ENSMUSG00000082986.1	Gm11389	ENSMUSG00000082986.1	ENSMUST00000121407.1	unprocessed_pseudogene	chr13:33686457-33689508
chr13	33701097	33704109	+	MMERVK10C-int	LTR	ERVK	chr13	33701101	33701103	-	ENSMUST00000181571.1,ENSMUSG00000097202.1	Gm26701	ENSMUSG00000097202.1	ENSMUST00000181571.1	unprocessed_pseudogene	chr13:33700473-33701102
chr13	33921805	33922337	+	RMER13A1	LTR	ERVK	chr13	33922058	33922060	-	ENSMUST00000171951.1,ENSMUSG00000060147.15	Serpinb6a	ENSMUSG00000060147.15	ENSMUST00000171951.1	protein_coding	chr13:33918232-33922059
chr13	33935844	33935907	+	C-rich	Low_complexity	Low_complexity	chr13	33935874	33935876	-	ENSMUST00000167260.7,ENSMUSG00000060147.15	Serpinb6a	ENSMUSG00000060147.15	ENSMUST00000167260.7	protein_coding	chr13:33922926-33935875
chr13	33935844	33935907	+	C-rich	Low_complexity	Low_complexity	chr13	33935847	33935849	-	ENSMUST00000168350.7,ENSMUSG00000060147.15	Serpinb6a	ENSMUSG00000060147.15	ENSMUST00000168350.7	protein_coding	chr13:33923019-33935848
chr13	33966986	33967312	+	ORR1A2	LTR	ERVL-MaLR	chr13	33967152	33967154	+	ENSMUST00000222740.1,ENSMUSG00000046949.16	Nqo2	ENSMUSG00000046949.16	ENSMUST00000222740.1	protein_coding	chr13:33967153-33985639
chr13	34113186	34113353	+	MT2A	LTR	ERVL	chr13	34113271	34113273	-	ENSMUST00000222745.1,ENSMUSG00000113591.1	4930447K03Rik	ENSMUSG00000113591.1	ENSMUST00000222745.1	processed_transcript	chr13:34084155-34113272
chr13	34277037	34277253	-	7SK	RNA	RNA	chr13	34277251	34277253	-	ENSMUST00000157948.1,ENSMUSG00000088573.1	Gm24530	ENSMUSG00000088573.1	ENSMUST00000157948.1	misc_RNA	chr13:34276965-34277252
chr13	34277248	34277361	-	ID_B1	SINE	B4	chr13	34277251	34277253	-	ENSMUST00000157948.1,ENSMUSG00000088573.1	Gm24530	ENSMUSG00000088573.1	ENSMUST00000157948.1	misc_RNA	chr13:34276965-34277252
chr13	34506487	34506542	+	C-rich	Low_complexity	Low_complexity	chr13	34506487	34506489	-	ENSMUST00000221677.1,ENSMUSG00000113998.1	Gm40909	ENSMUSG00000113998.1	ENSMUST00000221677.1	lincRNA	chr13:34500728-34506488
chr13	34506487	34506542	+	C-rich	Low_complexity	Low_complexity	chr13	34506510	34506512	-	ENSMUST00000223275.1,ENSMUSG00000113998.1	Gm40909	ENSMUSG00000113998.1	ENSMUST00000223275.1	lincRNA	chr13:34500728-34506511
chr13	34680909	34681328	+	RLTR20B3	LTR	ERVK	chr13	34680920	34680922	-	ENSMUST00000221868.1,ENSMUSG00000113044.1	Gm47149	ENSMUSG00000113044.1	ENSMUST00000221868.1	processed_pseudogene	chr13:34680733-34680921
chr13	34711324	34711500	+	B3A	SINE	B2	chr13	34711448	34711450	+	ENSMUST00000222361.1,ENSMUSG00000113615.1	Gm47150	ENSMUSG00000113615.1	ENSMUST00000222361.1	lincRNA	chr13:34711449-34715030
chr13	34739539	34739863	-	ORR1F	LTR	ERVL-MaLR	chr13	34739611	34739613	+	ENSMUST00000221037.1,ENSMUSG00000038246.7	Fam50b	ENSMUSG00000038246.7	ENSMUST00000221037.1	protein_coding	chr13:34739612-34747622
chr13	35052390	35052881	+	MT2_Mm	LTR	ERVL	chr13	35052726	35052728	+	ENSMUST00000221012.1,ENSMUSG00000113738.1	Gm40910	ENSMUSG00000113738.1	ENSMUST00000221012.1	lincRNA	chr13:35052727-35081554
chr13	35075943	35078726	-	L1VL2	LINE	L1	chr13	35078488	35078490	+	ENSMUST00000223077.1,ENSMUSG00000113738.1	Gm40910	ENSMUSG00000113738.1	ENSMUST00000223077.1	lincRNA	chr13:35078489-35083260
chr13	35167818	35168122	-	MER44B	DNA	TcMar-Tigger	chr13	35167926	35167928	+	ENSMUST00000221760.1,ENSMUSG00000102099.2	1700011B04Rik	ENSMUSG00000102099.2	ENSMUST00000221760.1	processed_transcript	chr13:35167927-35188017
chr13	35167818	35168122	-	MER44B	DNA	TcMar-Tigger	chr13	35167926	35167928	+	ENSMUST00000221013.1,ENSMUSG00000102099.2	1700011B04Rik	ENSMUSG00000102099.2	ENSMUST00000221013.1	processed_transcript	chr13:35167927-35188017
chr13	35179927	35180253	-	MLT1A0	LTR	ERVL-MaLR	chr13	35180013	35180015	+	ENSMUST00000220654.1,ENSMUSG00000102099.2	1700011B04Rik	ENSMUSG00000102099.2	ENSMUST00000220654.1	processed_transcript	chr13:35180014-35188017
chr13	35211875	35212310	-	MTE2b	LTR	ERVL-MaLR	chr13	35211930	35211932	-	ENSMUST00000221688.1,ENSMUSG00000113770.1	1700019C18Rik	ENSMUSG00000113770.1	ENSMUST00000221688.1	lincRNA	chr13:35184370-35211931
chr13	35211875	35212310	-	MTE2b	LTR	ERVL-MaLR	chr13	35212022	35212024	-	ENSMUST00000222085.1,ENSMUSG00000113770.1	1700019C18Rik	ENSMUSG00000113770.1	ENSMUST00000222085.1	lincRNA	chr13:35188310-35212023
chr13	35211875	35212310	-	MTE2b	LTR	ERVL-MaLR	chr13	35212047	35212049	-	ENSMUST00000220954.1,ENSMUSG00000113770.1	1700019C18Rik	ENSMUSG00000113770.1	ENSMUST00000220954.1	lincRNA	chr13:35210660-35212048
chr13	35543699	35544093	+	MTA_Mm	LTR	ERVL-MaLR	chr13	35543901	35543903	+	ENSMUST00000225154.1,ENSMUSG00000114337.1	Gm48704	ENSMUSG00000114337.1	ENSMUST00000225154.1	lincRNA	chr13:35543902-35545484
chr13	35662134	35662276	+	U1	snRNA	snRNA	chr13	35662134	35662136	+	ENSMUST00000083244.1,ENSMUSG00000065178.1	Gm22126	ENSMUSG00000065178.1	ENSMUST00000083244.1	snRNA	chr13:35662135-35662276
chr13	35958693	35959114	+	ORR1B2	LTR	ERVL-MaLR	chr13	35958838	35958840	+	ENSMUST00000225537.1,ENSMUSG00000050423.11	Ppp1r3g	ENSMUSG00000050423.11	ENSMUST00000225537.1	protein_coding	chr13:35958839-35970388
chr13	36189465	36190462	+	L1Md_T	LINE	L1	chr13	36189722	36189724	-	ENSMUST00000223888.1,ENSMUSG00000114407.1	Gm48765	ENSMUSG00000114407.1	ENSMUST00000223888.1	antisense	chr13:36006725-36189723
chr13	36252302	36254140	-	RLTR22_Mus	LTR	ERVK	chr13	36252358	36252360	+	ENSMUST00000225563.1,ENSMUSG00000114617.1	Gm48766	ENSMUSG00000114617.1	ENSMUST00000225563.1	TEC	chr13:36252359-36256920
chr13	36734421	36734482	+	GA-rich	Low_complexity	Low_complexity	chr13	36734476	36734478	-	ENSMUST00000037623.14,ENSMUSG00000039114.16	Nrn1	ENSMUSG00000039114.16	ENSMUST00000037623.14	protein_coding	chr13:36725625-36734477
chr13	36831318	36837594	-	L1Md_F2	LINE	L1	chr13	36836365	36836367	+	ENSMUST00000225846.1,ENSMUSG00000114483.1	Gm49144	ENSMUSG00000114483.1	ENSMUST00000225846.1	antisense	chr13:36836366-36885596
chr13	37451132	37451287	+	ORR1F	LTR	ERVL-MaLR	chr13	37451156	37451158	-	ENSMUST00000191359.1,ENSMUSG00000100932.1	Gm29459	ENSMUSG00000100932.1	ENSMUST00000191359.1	lincRNA	chr13:37449400-37451157
chr13	37564846	37565070	+	MIR	SINE	MIR	chr13	37564971	37564973	-	ENSMUST00000224689.1,ENSMUSG00000114724.1	Gm47751	ENSMUSG00000114724.1	ENSMUST00000224689.1	lincRNA	chr13:37561945-37564972
chr13	37582167	37582283	+	ORR1C2	LTR	ERVL-MaLR	chr13	37582270	37582272	+	ENSMUST00000223615.1,ENSMUSG00000114718.1	Gm47753	ENSMUSG00000114718.1	ENSMUST00000223615.1	processed_pseudogene	chr13:37582271-37582564
chr13	37667273	37667447	+	(TCTCC)n	Simple_repeat	Simple_repeat	chr13	37667283	37667285	-	ENSMUST00000224151.1,ENSMUSG00000114828.1	AI463229	ENSMUSG00000114828.1	ENSMUST00000224151.1	lincRNA	chr13:37657822-37667284
chr13	38039029	38039175	+	B1_Mur2	SINE	Alu	chr13	38039046	38039048	+	ENSMUST00000226110.1,ENSMUSG00000021428.9	Riok1	ENSMUSG00000021428.9	ENSMUST00000226110.1	protein_coding	chr13:38039047-38043944
chr13	38048152	38048462	-	ORR1E	LTR	ERVL-MaLR	chr13	38048458	38048460	+	ENSMUST00000225418.1,ENSMUSG00000021428.9	Riok1	ENSMUSG00000021428.9	ENSMUST00000225418.1	protein_coding	chr13:38048459-38050259
chr13	38050421	38050557	-	B1_Mm	SINE	Alu	chr13	38050436	38050438	+	ENSMUST00000226056.1,ENSMUSG00000021428.9	Riok1	ENSMUSG00000021428.9	ENSMUST00000226056.1	protein_coding	chr13:38050437-38060839
chr13	38086099	38086317	-	B3	SINE	B2	chr13	38086201	38086203	+	ENSMUST00000184583.1,ENSMUSG00000098481.1	Gm27387	ENSMUSG00000098481.1	ENSMUST00000184583.1	miRNA	chr13:38086202-38086317
chr13	38178034	38178374	-	ORR1F	LTR	ERVL-MaLR	chr13	38178366	38178368	+	ENSMUST00000145151.1,ENSMUSG00000054889.10	Dsp	ENSMUSG00000054889.10	ENSMUST00000145151.1	protein_coding	chr13:38178367-38182234
chr13	38461678	38461972	+	Charlie18a	DNA	hAT-Charlie	chr13	38461798	38461800	-	ENSMUST00000224802.1,ENSMUSG00000114895.1	4930579J19Rik	ENSMUSG00000114895.1	ENSMUST00000224802.1	antisense	chr13:38454149-38461799
chr13	38461678	38461972	+	Charlie18a	DNA	hAT-Charlie	chr13	38461792	38461794	-	ENSMUST00000223826.1,ENSMUSG00000114895.1	4930579J19Rik	ENSMUSG00000114895.1	ENSMUST00000223826.1	antisense	chr13:38460240-38461793
chr13	38461678	38461972	+	Charlie18a	DNA	hAT-Charlie	chr13	38461804	38461806	-	ENSMUST00000225893.1,ENSMUSG00000114895.1	4930579J19Rik	ENSMUSG00000114895.1	ENSMUST00000225893.1	antisense	chr13:38460256-38461805
chr13	38536616	38536738	+	ID_B1	SINE	B4	chr13	38536679	38536681	-	ENSMUST00000225265.1,ENSMUSG00000114331.1	Gm48056	ENSMUSG00000114331.1	ENSMUST00000225265.1	lincRNA	chr13:38535274-38536680
chr13	38709717	38710210	+	MT2_Mm	LTR	ERVL	chr13	38710053	38710055	+	ENSMUST00000224240.1,ENSMUSG00000114767.1	Gm46392	ENSMUSG00000114767.1	ENSMUST00000224240.1	lincRNA	chr13:38710054-38896875
chr13	38825494	38825823	-	ORR1A2	LTR	ERVL-MaLR	chr13	38825754	38825756	-	ENSMUST00000226011.1,ENSMUSG00000114319.1	Gm47509	ENSMUSG00000114319.1	ENSMUST00000226011.1	lincRNA	chr13:38782603-38825755
chr13	38825494	38825823	-	ORR1A2	LTR	ERVL-MaLR	chr13	38825717	38825719	-	ENSMUST00000225304.1,ENSMUSG00000114319.1	Gm47509	ENSMUSG00000114319.1	ENSMUST00000225304.1	lincRNA	chr13:38813244-38825718
chr13	38951286	38951313	+	(TG)n	Simple_repeat	Simple_repeat	chr13	38951312	38951314	-	ENSMUST00000181087.1,ENSMUSG00000097151.1	Gm26514	ENSMUSG00000097151.1	ENSMUST00000181087.1	lincRNA	chr13:38945543-38951313
chr13	38960402	38960497	+	C-rich	Low_complexity	Low_complexity	chr13	38960495	38960497	-	ENSMUST00000225461.1,ENSMUSG00000021432.15	Slc35b3	ENSMUSG00000021432.15	ENSMUST00000225461.1	protein_coding	chr13:38932305-38960496
chr13	38960402	38960497	+	C-rich	Low_complexity	Low_complexity	chr13	38960484	38960486	-	ENSMUST00000224429.1,ENSMUSG00000021432.15	Slc35b3	ENSMUSG00000021432.15	ENSMUST00000224429.1	protein_coding	chr13:38937267-38960485
chr13	38960402	38960497	+	C-rich	Low_complexity	Low_complexity	chr13	38960479	38960481	-	ENSMUST00000223619.1,ENSMUSG00000021432.15	Slc35b3	ENSMUSG00000021432.15	ENSMUST00000223619.1	protein_coding	chr13:38939443-38960480
chr13	39466494	39467884	-	Lx10	LINE	L1	chr13	39467016	39467018	-	ENSMUST00000224413.1,ENSMUSG00000114821.1	Gm3509	ENSMUSG00000114821.1	ENSMUST00000224413.1	lincRNA	chr13:39463227-39467017
chr13	39466494	39467884	-	Lx10	LINE	L1	chr13	39467346	39467348	+	ENSMUST00000225123.1,ENSMUSG00000114330.1	Gm47349	ENSMUSG00000114330.1	ENSMUST00000225123.1	lincRNA	chr13:39467347-39470134
chr13	39858859	39859027	-	U1	snRNA	snRNA	chr13	39859026	39859028	-	ENSMUST00000083322.1,ENSMUSG00000065256.1	Gm23972	ENSMUSG00000065256.1	ENSMUST00000083322.1	snRNA	chr13:39858863-39859027
chr13	40361321	40361656	+	RLTR30	LTR	ERV1	chr13	40361449	40361451	-	ENSMUST00000224813.1,ENSMUSG00000047094.9	Ofcc1	ENSMUSG00000047094.9	ENSMUST00000224813.1	protein_coding	chr13:40279889-40361450
chr13	40644577	40644676	+	MIR3	SINE	MIR	chr13	40644648	40644650	-	ENSMUST00000225346.1,ENSMUSG00000114322.1	Gm47041	ENSMUSG00000114322.1	ENSMUST00000225346.1	TEC	chr13:40642607-40644649
chr13	40728944	40728976	+	(A)n	Simple_repeat	Simple_repeat	chr13	40728943	40728945	-	ENSMUST00000225180.1,ENSMUSG00000021359.16	Tfap2a	ENSMUSG00000021359.16	ENSMUST00000225180.1	protein_coding	chr13:40716724-40728944
chr13	40730430	40730510	+	(A)n	Simple_repeat	Simple_repeat	chr13	40730442	40730444	-	ENSMUST00000021787.6,ENSMUSG00000021359.16	Tfap2a	ENSMUSG00000021359.16	ENSMUST00000021787.6	protein_coding	chr13:40715302-40730443
chr13	40733817	40733936	+	GA-rich	Low_complexity	Low_complexity	chr13	40733822	40733824	-	ENSMUST00000110193.8,ENSMUSG00000021359.16	Tfap2a	ENSMUSG00000021359.16	ENSMUST00000110193.8	protein_coding	chr13:40715675-40733823
chr13	40737565	40737600	+	(GA)n	Simple_repeat	Simple_repeat	chr13	40737567	40737569	+	ENSMUST00000224614.1,ENSMUSG00000114597.1	Gm47067	ENSMUSG00000114597.1	ENSMUST00000224614.1	antisense	chr13:40737568-40739021
chr13	40754885	40755018	+	MIR3	SINE	MIR	chr13	40754993	40754995	-	ENSMUST00000225467.1,ENSMUSG00000114640.1	Gm48107	ENSMUSG00000114640.1	ENSMUST00000225467.1	lincRNA	chr13:40754060-40754994
chr13	40754885	40755018	+	MIR3	SINE	MIR	chr13	40754995	40754997	-	ENSMUST00000224849.1,ENSMUSG00000114640.1	Gm48107	ENSMUSG00000114640.1	ENSMUST00000224849.1	lincRNA	chr13:40754060-40754996
chr13	40865785	40865978	+	B3A	SINE	B2	chr13	40865790	40865792	+	ENSMUST00000175528.1,ENSMUSG00000093269.1	Mir5124a	ENSMUSG00000093269.1	ENSMUST00000175528.1	miRNA	chr13:40865791-40865862
chr13	40874181	40874222	-	B3A	SINE	B2	chr13	40874188	40874190	-	ENSMUST00000225988.1,ENSMUSG00000114672.1	Gm48192	ENSMUSG00000114672.1	ENSMUST00000225988.1	TEC	chr13:40873498-40874189
chr13	40946602	40946737	+	MER20	DNA	hAT-Charlie	chr13	40946731	40946733	+	ENSMUST00000223570.1,ENSMUSG00000021360.16	Gcnt2	ENSMUSG00000021360.16	ENSMUST00000223570.1	protein_coding	chr13:40946732-40953820
chr13	40953364	40953473	+	MER20	DNA	hAT-Charlie	chr13	40953414	40953416	+	ENSMUST00000225996.1,ENSMUSG00000021360.16	Gcnt2	ENSMUSG00000021360.16	ENSMUST00000225996.1	protein_coding	chr13:40953415-40958228
chr13	41110035	41110195	+	GA-rich	Low_complexity	Low_complexity	chr13	41110182	41110184	-	ENSMUST00000021791.7,ENSMUSG00000021362.7	Gcm2	ENSMUSG00000021362.7	ENSMUST00000021791.7	protein_coding	chr13:41101428-41110183
chr13	41220404	41220535	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr13	41220404	41220406	-	ENSMUST00000021793.14,ENSMUSG00000021364.16	Elovl2	ENSMUSG00000021364.16	ENSMUST00000021793.14	protein_coding	chr13:41182381-41220405
chr13	41273725	41274049	+	Kanga1	DNA	TcMar-Tc2	chr13	41273976	41273978	-	ENSMUST00000163881.1,ENSMUSG00000090853.1	Gm17364	ENSMUSG00000090853.1	ENSMUST00000163881.1	protein_coding	chr13:41273803-41273977
chr13	41477879	41477936	+	C-rich	Low_complexity	Low_complexity	chr13	41477899	41477901	-	ENSMUST00000223906.1,ENSMUSG00000114537.1	Gm48569	ENSMUSG00000114537.1	ENSMUST00000223906.1	TEC	chr13:41476526-41477900
chr13	41649158	41649447	+	RMER5	LTR	ERV1	chr13	41649442	41649444	+	ENSMUST00000221920.1,ENSMUSG00000054258.9	Gm5082	ENSMUSG00000054258.9	ENSMUST00000221920.1	lincRNA	chr13:41649443-41656700
chr13	41650679	41650932	+	B4	SINE	B4	chr13	41650761	41650763	+	ENSMUST00000221546.1,ENSMUSG00000054258.9	Gm5082	ENSMUSG00000054258.9	ENSMUST00000221546.1	lincRNA	chr13:41650762-41656777
chr13	41800423	41800820	-	MLT1A1	LTR	ERVL-MaLR	chr13	41800565	41800567	-	ENSMUST00000220949.1,ENSMUSG00000058022.14	Adtrp	ENSMUSG00000058022.14	ENSMUST00000220949.1	protein_coding	chr13:41764584-41800566
chr13	41800423	41800820	-	MLT1A1	LTR	ERVL-MaLR	chr13	41800782	41800784	+	ENSMUST00000154159.1,ENSMUSG00000085759.1	1700061E18Rik	ENSMUSG00000085759.1	ENSMUST00000154159.1	antisense	chr13:41800783-41801795
chr13	41842836	41843301	+	RLTR20C2_MM	LTR	ERVK	chr13	41843013	41843015	+	ENSMUST00000190864.1,ENSMUSG00000099672.1	Gm28564	ENSMUSG00000099672.1	ENSMUST00000190864.1	antisense	chr13:41843014-41849768
chr13	41901648	41901752	+	U6	snRNA	snRNA	chr13	41901650	41901652	+	ENSMUST00000158410.1,ENSMUSG00000089035.1	Gm22157	ENSMUSG00000089035.1	ENSMUST00000158410.1	snRNA	chr13:41901651-41901754
chr13	42049334	42049366	+	(T)n	Simple_repeat	Simple_repeat	chr13	42049333	42049335	+	ENSMUST00000186134.1,ENSMUSG00000100071.1	Gm28707	ENSMUSG00000100071.1	ENSMUST00000186134.1	lincRNA	chr13:42049334-42050287
chr13	42624899	42625037	-	RLTR17B_Mm	LTR	ERVK	chr13	42624993	42624995	+	ENSMUST00000116935.3,ENSMUSG00000095255.2	Gm23086	ENSMUSG00000095255.2	ENSMUST00000116935.3	miRNA	chr13:42624994-42625084
chr13	42709514	42709620	+	C-rich	Low_complexity	Low_complexity	chr13	42709542	42709544	+	ENSMUST00000066928.11,ENSMUSG00000054728.16	Phactr1	ENSMUSG00000054728.16	ENSMUST00000066928.11	protein_coding	chr13:42709543-43135401
chr13	42709514	42709620	+	C-rich	Low_complexity	Low_complexity	chr13	42709580	42709582	+	ENSMUST00000148891.7,ENSMUSG00000054728.16	Phactr1	ENSMUSG00000054728.16	ENSMUST00000148891.7	protein_coding	chr13:42709581-43138526
chr13	43052193	43052410	-	7SK	RNA	RNA	chr13	43052409	43052411	-	ENSMUST00000157902.1,ENSMUSG00000088527.1	Gm26086	ENSMUSG00000088527.1	ENSMUST00000157902.1	misc_RNA	chr13:43052148-43052410
chr13	43135304	43135405	+	(GAAA)n	Simple_repeat	Simple_repeat	chr13	43135383	43135385	+	ENSMUST00000161201.1,ENSMUSG00000054728.16	Phactr1	ENSMUSG00000054728.16	ENSMUST00000161201.1	protein_coding	chr13:43135384-43138513
chr13	43425742	43425850	-	U6	snRNA	snRNA	chr13	43425849	43425851	-	ENSMUST00000083381.1,ENSMUSG00000065315.1	Gm26064	ENSMUSG00000065315.1	ENSMUST00000083381.1	snRNA	chr13:43425742-43425850
chr13	43480665	43480748	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	43480670	43480672	-	ENSMUST00000220500.1,ENSMUSG00000038546.9	Ranbp9	ENSMUSG00000038546.9	ENSMUST00000220500.1	protein_coding	chr13:43421235-43480671
chr13	43481282	43481307	+	(CGGG)n	Simple_repeat	Simple_repeat	chr13	43481281	43481283	-	ENSMUST00000144326.3,ENSMUSG00000038546.9	Ranbp9	ENSMUSG00000038546.9	ENSMUST00000144326.3	protein_coding	chr13:43402675-43481282
chr13	43545904	43546256	+	MTD	LTR	ERVL-MaLR	chr13	43546119	43546121	-	ENSMUST00000223347.1,ENSMUSG00000021371.5	Mcur1	ENSMUSG00000021371.5	ENSMUST00000223347.1	protein_coding	chr13:43541699-43546120
chr13	43682884	43683279	+	MTA_Mm	LTR	ERVL-MaLR	chr13	43683119	43683121	+	ENSMUST00000222349.1,ENSMUSG00000114121.1	Gm47728	ENSMUSG00000114121.1	ENSMUST00000222349.1	lincRNA	chr13:43683120-43701064
chr13	43843822	43844207	+	RLTR31B2	LTR	ERVK	chr13	43843959	43843961	+	ENSMUST00000220913.1,ENSMUSG00000114192.1	Gm33115	ENSMUSG00000114192.1	ENSMUST00000220913.1	lincRNA	chr13:43843960-43846101
chr13	44216383	44216609	-	MamGypLTR1a	LTR	Gypsy	chr13	44216433	44216435	-	ENSMUST00000220765.1,ENSMUSG00000113186.1	A330076C08Rik	ENSMUSG00000113186.1	ENSMUST00000220765.1	lincRNA	chr13:44185760-44216434
chr13	44216383	44216609	-	MamGypLTR1a	LTR	Gypsy	chr13	44216486	44216488	-	ENSMUST00000223513.1,ENSMUSG00000113186.1	A330076C08Rik	ENSMUSG00000113186.1	ENSMUST00000223513.1	lincRNA	chr13:44193589-44216487
chr13	44504532	44504805	+	RLTR12BD_Mm	LTR	ERVK	chr13	44504547	44504549	-	ENSMUST00000222236.1,ENSMUSG00000113010.1	Gm34084	ENSMUSG00000113010.1	ENSMUST00000222236.1	lincRNA	chr13:44472426-44504548
chr13	44840747	44840793	+	C-rich	Low_complexity	Low_complexity	chr13	44840782	44840784	+	ENSMUST00000173003.1,ENSMUSG00000038518.15	Jarid2	ENSMUSG00000038518.15	ENSMUST00000173003.1	protein_coding	chr13:44840783-44896481
chr13	45002027	45002130	+	C-rich	Low_complexity	Low_complexity	chr13	45002095	45002097	-	ENSMUST00000110128.4,ENSMUSG00000057531.14	Dtnbp1	ENSMUSG00000057531.14	ENSMUST00000110128.4	protein_coding	chr13:44922085-45002096
chr13	45002027	45002130	+	C-rich	Low_complexity	Low_complexity	chr13	45002090	45002092	-	ENSMUST00000222805.1,ENSMUSG00000057531.14	Dtnbp1	ENSMUSG00000057531.14	ENSMUST00000222805.1	protein_coding	chr13:44951783-45002091
chr13	45002027	45002130	+	C-rich	Low_complexity	Low_complexity	chr13	45002051	45002053	-	ENSMUST00000223524.1,ENSMUSG00000057531.14	Dtnbp1	ENSMUSG00000057531.14	ENSMUST00000223524.1	protein_coding	chr13:44982821-45002052
chr13	45294996	45295381	+	L1ME3B	LINE	L1	chr13	45294995	45294997	-	ENSMUST00000157578.1,ENSMUSG00000088203.1	Gm23755	ENSMUSG00000088203.1	ENSMUST00000157578.1	misc_RNA	chr13:45294654-45294996
chr13	45935868	45936191	+	ORR1E	LTR	ERVL-MaLR	chr13	45936039	45936041	+	ENSMUST00000222376.1,ENSMUSG00000113987.1	4930453C13Rik	ENSMUSG00000113987.1	ENSMUST00000222376.1	antisense	chr13:45936040-45936904
chr13	45965001	45965062	+	C-rich	Low_complexity	Low_complexity	chr13	45965007	45965009	-	ENSMUST00000221082.1,ENSMUSG00000046876.16	Atxn1	ENSMUSG00000046876.16	ENSMUST00000221082.1	protein_coding	chr13:45792329-45965008
chr13	46518683	46518772	+	5S	rRNA	rRNA	chr13	46518683	46518685	+	ENSMUST00000157288.1,ENSMUSG00000087913.1	Gm24915	ENSMUSG00000087913.1	ENSMUST00000157288.1	rRNA	chr13:46518684-46518761
chr13	46702110	46702157	+	(CTCA)n	Simple_repeat	Simple_repeat	chr13	46702129	46702131	-	ENSMUST00000182358.1,ENSMUSG00000021374.10	Nup153	ENSMUSG00000021374.10	ENSMUST00000182358.1	protein_coding	chr13:46699649-46702130
chr13	46715901	46716289	-	BGLII_Mus	LTR	ERVK	chr13	46716078	46716080	-	ENSMUST00000183299.2,ENSMUSG00000021374.10	Nup153	ENSMUSG00000021374.10	ENSMUST00000183299.2	protein_coding	chr13:46712666-46716079
chr13	46895517	46895736	+	B4	SINE	B4	chr13	46895704	46895706	-	ENSMUST00000225591.1,ENSMUSG00000021375.10	Kif13a	ENSMUSG00000021375.10	ENSMUST00000225591.1	protein_coding	chr13:46778904-46895705
chr13	46929661	46929730	+	(CCG)n	Simple_repeat	Simple_repeat	chr13	46929717	46929719	-	ENSMUST00000056978.7,ENSMUSG00000021375.10	Kif13a	ENSMUSG00000021375.10	ENSMUST00000056978.7	protein_coding	chr13:46749087-46929718
chr13	46929661	46929730	+	(CCG)n	Simple_repeat	Simple_repeat	chr13	46929716	46929718	-	ENSMUST00000224457.1,ENSMUSG00000021375.10	Kif13a	ENSMUSG00000021375.10	ENSMUST00000224457.1	protein_coding	chr13:46869574-46929717
chr13	47340745	47341407	+	L1Md_A	LINE	L1	chr13	47340938	47340940	-	ENSMUST00000224746.1,ENSMUSG00000114958.1	Gm48612	ENSMUSG00000114958.1	ENSMUST00000224746.1	lincRNA	chr13:47335251-47340939
chr13	48407836	48409077	-	MTC-int	LTR	ERVL-MaLR	chr13	48408511	48408513	-	ENSMUST00000225569.1,ENSMUSG00000114695.1	Gm48648	ENSMUSG00000114695.1	ENSMUST00000225569.1	lincRNA	chr13:48359459-48408512
chr13	48545001	48545134	-	B1_Mus1	SINE	Alu	chr13	48545032	48545034	-	ENSMUST00000195552.1,ENSMUSG00000103373.1	Gm37238	ENSMUSG00000103373.1	ENSMUST00000195552.1	TEC	chr13:48542644-48545033
chr13	48545009	48545152	-	B4A	SINE	B4	chr13	48545032	48545034	-	ENSMUST00000195552.1,ENSMUSG00000103373.1	Gm37238	ENSMUSG00000103373.1	ENSMUST00000195552.1	TEC	chr13:48542644-48545033
chr13	48662937	48663066	+	GC_rich	Low_complexity	Low_complexity	chr13	48662997	48662999	+	ENSMUST00000021813.4,ENSMUSG00000021381.4	Barx1	ENSMUSG00000021381.4	ENSMUST00000021813.4	protein_coding	chr13:48662998-48666507
chr13	48871053	48871183	+	GC_rich	Low_complexity	Low_complexity	chr13	48871118	48871120	-	ENSMUST00000035540.8,ENSMUSG00000038025.8	Phf2	ENSMUSG00000038025.8	ENSMUST00000035540.8	protein_coding	chr13:48801750-48871119
chr13	48871053	48871183	+	GC_rich	Low_complexity	Low_complexity	chr13	48871111	48871113	+	ENSMUST00000123212.1,ENSMUSG00000086889.1	Phf2os1	ENSMUSG00000086889.1	ENSMUST00000123212.1	antisense	chr13:48871112-48875460
chr13	49187413	49187523	+	G-rich	Low_complexity	Low_complexity	chr13	49187484	49187486	+	ENSMUST00000049022.14,ENSMUSG00000037966.15	Ninj1	ENSMUSG00000037966.15	ENSMUST00000049022.14	protein_coding	chr13:49187485-49196244
chr13	49341567	49341613	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	49341584	49341586	+	ENSMUST00000048544.13,ENSMUSG00000037933.16	Bicd2	ENSMUSG00000037933.16	ENSMUST00000048544.13	protein_coding	chr13:49341585-49387019
chr13	49341567	49341613	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	49341590	49341592	+	ENSMUST00000110084.3,ENSMUSG00000037933.16	Bicd2	ENSMUSG00000037933.16	ENSMUST00000110084.3	protein_coding	chr13:49341591-49387025
chr13	49341567	49341613	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	49341595	49341597	+	ENSMUST00000110085.10,ENSMUSG00000037933.16	Bicd2	ENSMUSG00000037933.16	ENSMUST00000110085.10	protein_coding	chr13:49341596-49387026
chr13	50129062	50135434	-	L1Md_A	LINE	L1	chr13	50134509	50134511	-	ENSMUST00000223015.1,ENSMUSG00000113921.1	Gm48054	ENSMUSG00000113921.1	ENSMUST00000223015.1	processed_pseudogene	chr13:50133670-50134510
chr13	50428890	50430106	-	MERV1_I-int	LTR	ERV1	chr13	50429969	50429971	+	ENSMUST00000176508.1,ENSMUSG00000037816.10	Fbxw17	ENSMUSG00000037816.10	ENSMUST00000176508.1	protein_coding	chr13:50429970-50432110
chr13	50786041	50786145	+	(GGA)n	Simple_repeat	Simple_repeat	chr13	50786143	50786145	+	ENSMUST00000221381.1,ENSMUSG00000112976.1	Gm2654	ENSMUSG00000112976.1	ENSMUST00000221381.1	processed_pseudogene	chr13:50786144-50787735
chr13	51014086	51014205	+	HY1	scRNA	scRNA	chr13	51014085	51014087	+	ENSMUST00000122660.2,ENSMUSG00000084609.2	Gm22199	ENSMUSG00000084609.2	ENSMUST00000122660.2	misc_RNA	chr13:51014086-51014211
chr13	51100783	51100900	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr13	51100879	51100881	+	ENSMUST00000095797.5,ENSMUSG00000021395.11	Spin1	ENSMUSG00000021395.11	ENSMUST00000095797.5	protein_coding	chr13:51100880-51152546
chr13	51134116	51134498	+	MTB	LTR	ERVL-MaLR	chr13	51134318	51134320	+	ENSMUST00000223152.1,ENSMUSG00000021395.11	Spin1	ENSMUSG00000021395.11	ENSMUST00000223152.1	protein_coding	chr13:51134319-51152494
chr13	51681736	51681859	+	MIR	SINE	MIR	chr13	51681772	51681774	+	ENSMUST00000153877.1,ENSMUSG00000035139.14	Secisbp2	ENSMUSG00000035139.14	ENSMUST00000153877.1	protein_coding	chr13:51681773-51683489
chr13	51793715	51793790	+	C-rich	Low_complexity	Low_complexity	chr13	51793746	51793748	-	ENSMUST00000021900.13,ENSMUSG00000021451.16	Sema4d	ENSMUSG00000021451.16	ENSMUST00000021900.13	protein_coding	chr13:51701246-51793747
chr13	52096620	52096774	+	Lx8	LINE	L1	chr13	52096667	52096669	-	ENSMUST00000220666.1,ENSMUSG00000113090.1	Gm48190	ENSMUSG00000113090.1	ENSMUST00000220666.1	lincRNA	chr13:52087607-52096668
chr13	52096620	52096774	+	Lx8	LINE	L1	chr13	52096641	52096643	-	ENSMUST00000222306.1,ENSMUSG00000113090.1	Gm48190	ENSMUSG00000113090.1	ENSMUST00000222306.1	lincRNA	chr13:52093091-52096642
chr13	52096620	52096774	+	Lx8	LINE	L1	chr13	52096740	52096742	+	ENSMUST00000220691.1,ENSMUSG00000113211.1	4921525O09Rik	ENSMUSG00000113211.1	ENSMUST00000220691.1	processed_transcript	chr13:52096741-52124158
chr13	52531057	52531381	-	MTE2a	LTR	ERVL-MaLR	chr13	52531278	52531280	-	ENSMUST00000057442.7,ENSMUSG00000047842.7	Diras2	ENSMUSG00000047842.7	ENSMUST00000057442.7	protein_coding	chr13:52504380-52531279
chr13	52583172	52583230	+	GA-rich	Low_complexity	Low_complexity	chr13	52583172	52583174	+	ENSMUST00000120135.7,ENSMUSG00000021457.14	Syk	ENSMUSG00000021457.14	ENSMUST00000120135.7	protein_coding	chr13:52583173-52648792
chr13	52923795	52924030	-	L1MC	LINE	L1	chr13	52923864	52923866	-	ENSMUST00000132598.7,ENSMUSG00000021460.17	Auh	ENSMUSG00000021460.17	ENSMUST00000132598.7	protein_coding	chr13:52896703-52923865
chr13	52923795	52924030	-	L1MC	LINE	L1	chr13	52923843	52923845	-	ENSMUST00000142515.7,ENSMUSG00000021460.17	Auh	ENSMUSG00000021460.17	ENSMUST00000142515.7	protein_coding	chr13:52908895-52923844
chr13	52923795	52924030	-	L1MC	LINE	L1	chr13	52923867	52923869	-	ENSMUST00000133906.7,ENSMUSG00000021460.17	Auh	ENSMUSG00000021460.17	ENSMUST00000133906.7	protein_coding	chr13:52912849-52923868
chr13	52923795	52924030	-	L1MC	LINE	L1	chr13	52923859	52923861	-	ENSMUST00000153329.1,ENSMUSG00000021460.17	Auh	ENSMUSG00000021460.17	ENSMUST00000153329.1	protein_coding	chr13:52918774-52923860
chr13	52964641	52964732	-	5S	rRNA	rRNA	chr13	52964731	52964733	-	ENSMUST00000083837.1,ENSMUSG00000065771.1	n-R5s54	ENSMUSG00000065771.1	ENSMUST00000083837.1	rRNA	chr13:52964621-52964732
chr13	52981058	52981162	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr13	52981072	52981074	-	ENSMUST00000071065.7,ENSMUSG00000056749.7	Nfil3	ENSMUSG00000056749.7	ENSMUST00000071065.7	protein_coding	chr13:52967209-52981073
chr13	53028902	53029168	+	B4A	SINE	B4	chr13	53028917	53028919	+	ENSMUST00000222184.1,ENSMUSG00000112952.1	Gm48336	ENSMUSG00000112952.1	ENSMUST00000222184.1	lincRNA	chr13:53028918-53035090
chr13	53393535	53393703	+	MER57D	LTR	ERV1	chr13	53393656	53393658	+	ENSMUST00000202976.3,ENSMUSG00000107008.3	Gm2762	ENSMUSG00000107008.3	ENSMUST00000202976.3	lincRNA	chr13:53393657-53397974
chr13	53393535	53393703	+	MER57D	LTR	ERV1	chr13	53393672	53393674	+	ENSMUST00000201658.3,ENSMUSG00000107008.3	Gm2762	ENSMUSG00000107008.3	ENSMUST00000201658.3	lincRNA	chr13:53393673-53454544
chr13	53393535	53393703	+	MER57D	LTR	ERV1	chr13	53393688	53393690	+	ENSMUST00000201517.3,ENSMUSG00000107008.3	Gm2762	ENSMUSG00000107008.3	ENSMUST00000201517.3	lincRNA	chr13:53393689-53455630
chr13	53915370	53915847	-	RMER19C	LTR	ERVK	chr13	53915747	53915749	-	ENSMUST00000223176.1,ENSMUSG00000114069.1	E130119H09Rik	ENSMUSG00000114069.1	ENSMUST00000223176.1	processed_transcript	chr13:53912263-53915748
chr13	53968649	53968982	-	IAPLTR1a_Mm	LTR	ERVK	chr13	53968943	53968945	+	ENSMUST00000222780.1,ENSMUSG00000113882.1	Gm48550	ENSMUSG00000113882.1	ENSMUST00000222780.1	lincRNA	chr13:53968944-53976666
chr13	54071844	54071870	+	GC_rich	Low_complexity	Low_complexity	chr13	54071868	54071870	+	ENSMUST00000021930.9,ENSMUSG00000021474.9	Sfxn1	ENSMUSG00000021474.9	ENSMUST00000021930.9	protein_coding	chr13:54071869-54108342
chr13	54327778	54328024	-	Tigger7	DNA	TcMar-Tigger	chr13	54327879	54327881	-	ENSMUST00000220818.1,ENSMUSG00000113404.1	Gm48622	ENSMUSG00000113404.1	ENSMUST00000220818.1	lincRNA	chr13:54309905-54327880
chr13	54429471	54429707	-	7SK	RNA	RNA	chr13	54429699	54429701	-	ENSMUST00000158716.1,ENSMUSG00000089341.1	Gm22668	ENSMUSG00000089341.1	ENSMUST00000158716.1	misc_RNA	chr13:54429441-54429700
chr13	54511944	54512390	+	RMER6B	LTR	ERVK	chr13	54512144	54512146	+	ENSMUST00000123852.1,ENSMUSG00000043183.18	Simc1	ENSMUSG00000043183.18	ENSMUST00000123852.1	protein_coding	chr13:54512145-54524259
chr13	54577875	54578191	+	L2b	LINE	L2	chr13	54578112	54578114	+	ENSMUST00000116804.3,ENSMUSG00000080454.3	Gm24195	ENSMUSG00000080454.3	ENSMUST00000116804.3	miRNA	chr13:54578113-54578249
chr13	54611289	54611311	+	GC_rich	Low_complexity	Low_complexity	chr13	54611291	54611293	-	ENSMUST00000049575.7,ENSMUSG00000047547.14	Cltb	ENSMUSG00000047547.14	ENSMUST00000049575.7	protein_coding	chr13:54593585-54611292
chr13	54611289	54611311	+	GC_rich	Low_complexity	Low_complexity	chr13	54611291	54611293	-	ENSMUST00000146301.1,ENSMUSG00000047547.14	Cltb	ENSMUSG00000047547.14	ENSMUST00000146301.1	protein_coding	chr13:54596040-54611292
chr13	54687800	54687848	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr13	54687807	54687809	-	ENSMUST00000177950.7,ENSMUSG00000034928.16	Rnf44	ENSMUSG00000034928.16	ENSMUST00000177950.7	protein_coding	chr13:54679399-54687808
chr13	54687800	54687848	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr13	54687807	54687809	-	ENSMUST00000146931.7,ENSMUSG00000034928.16	Rnf44	ENSMUSG00000034928.16	ENSMUST00000146931.7	protein_coding	chr13:54683992-54687808
chr13	54782907	54783297	-	MTB_Mm	LTR	ERVL-MaLR	chr13	54783090	54783092	-	ENSMUST00000124055.1,ENSMUSG00000084949.1	Gm16249	ENSMUSG00000084949.1	ENSMUST00000124055.1	antisense	chr13:54777514-54783091
chr13	54949380	54949470	+	GC_rich	Low_complexity	Low_complexity	chr13	54949410	54949412	+	ENSMUST00000026994.13,ENSMUSG00000025876.15	Unc5a	ENSMUSG00000025876.15	ENSMUST00000026994.13	protein_coding	chr13:54949411-55006018
chr13	54949380	54949470	+	GC_rich	Low_complexity	Low_complexity	chr13	54949410	54949412	+	ENSMUST00000109994.8,ENSMUSG00000025876.15	Unc5a	ENSMUSG00000025876.15	ENSMUST00000109994.8	protein_coding	chr13:54949411-55006018
chr13	55093442	55093512	+	(TA)n	Simple_repeat	Simple_repeat	chr13	55093507	55093509	-	ENSMUST00000124561.1,ENSMUSG00000025878.16	Uimc1	ENSMUSG00000025878.16	ENSMUST00000124561.1	protein_coding	chr13:55085639-55093508
chr13	55100278	55100332	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr13	55100294	55100296	-	ENSMUST00000026997.11,ENSMUSG00000025878.16	Uimc1	ENSMUSG00000025878.16	ENSMUST00000026997.11	protein_coding	chr13:55027880-55100295
chr13	55100278	55100332	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr13	55100299	55100301	-	ENSMUST00000127195.7,ENSMUSG00000025878.16	Uimc1	ENSMUSG00000025878.16	ENSMUST00000127195.7	protein_coding	chr13:55027880-55100300
chr13	55100278	55100332	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr13	55100299	55100301	-	ENSMUST00000099496.3,ENSMUSG00000025878.16	Uimc1	ENSMUSG00000025878.16	ENSMUST00000099496.3	protein_coding	chr13:55028295-55100300
chr13	55100278	55100332	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr13	55100298	55100300	-	ENSMUST00000133187.1,ENSMUSG00000025878.16	Uimc1	ENSMUSG00000025878.16	ENSMUST00000133187.1	protein_coding	chr13:55075136-55100299
chr13	55130159	55130282	-	RSINE1	SINE	B4	chr13	55130223	55130225	+	ENSMUST00000162653.1,ENSMUSG00000021481.11	Zfp346	ENSMUSG00000021481.11	ENSMUST00000162653.1	protein_coding	chr13:55130224-55132630
chr13	55329768	55329869	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr13	55329822	55329824	-	ENSMUST00000225561.1,ENSMUSG00000021485.14	Mxd3	ENSMUSG00000021485.14	ENSMUST00000225561.1	protein_coding	chr13:55325487-55329823
chr13	55403180	55403215	+	(CA)n	Simple_repeat	Simple_repeat	chr13	55403203	55403205	+	ENSMUST00000224043.1,ENSMUSG00000021490.11	Slc34a1	ENSMUSG00000021490.11	ENSMUST00000224043.1	protein_coding	chr13:55403204-55414691
chr13	55445336	55445390	+	GC_rich	Low_complexity	Low_complexity	chr13	55445337	55445339	+	ENSMUST00000001115.15,ENSMUSG00000074886.11	Grk6	ENSMUSG00000074886.11	ENSMUST00000001115.15	protein_coding	chr13:55445338-55460927
chr13	55445336	55445390	+	GC_rich	Low_complexity	Low_complexity	chr13	55445345	55445347	+	ENSMUST00000224995.1,ENSMUSG00000074886.11	Grk6	ENSMUSG00000074886.11	ENSMUST00000224995.1	protein_coding	chr13:55445346-55460927
chr13	55458149	55458265	+	(TG)n	Simple_repeat	Simple_repeat	chr13	55458238	55458240	+	ENSMUST00000224532.1,ENSMUSG00000074886.11	Grk6	ENSMUSG00000074886.11	ENSMUST00000224532.1	protein_coding	chr13:55458239-55459073
chr13	55488077	55488120	+	GC_rich	Low_complexity	Low_complexity	chr13	55488110	55488112	-	ENSMUST00000109923.8,ENSMUSG00000034675.17	Dbn1	ENSMUSG00000034675.17	ENSMUST00000109923.8	protein_coding	chr13:55473429-55488111
chr13	55488077	55488120	+	GC_rich	Low_complexity	Low_complexity	chr13	55488110	55488112	-	ENSMUST00000021950.14,ENSMUSG00000034675.17	Dbn1	ENSMUSG00000034675.17	ENSMUST00000021950.14	protein_coding	chr13:55473429-55488111
chr13	55552216	55552360	+	B1_Mus2	SINE	Alu	chr13	55552328	55552330	-	ENSMUST00000224486.1,ENSMUSG00000021495.9	Fam193b	ENSMUSG00000021495.9	ENSMUST00000224486.1	protein_coding	chr13:55539319-55552329
chr13	55558770	55558978	+	B3	SINE	B2	chr13	55558907	55558909	-	ENSMUST00000225262.1,ENSMUSG00000021495.9	Fam193b	ENSMUSG00000021495.9	ENSMUST00000225262.1	protein_coding	chr13:55554964-55558908
chr13	55573579	55573884	+	RLTR12D	LTR	ERVK	chr13	55573731	55573733	+	ENSMUST00000224741.1,ENSMUSG00000058569.8	Tmed9	ENSMUSG00000058569.8	ENSMUST00000224741.1	protein_coding	chr13:55573732-55597687
chr13	55600044	55600066	+	GC_rich	Low_complexity	Low_complexity	chr13	55600064	55600066	+	ENSMUST00000142654.7,ENSMUSG00000021504.14	B4galt7	ENSMUSG00000021504.14	ENSMUST00000142654.7	protein_coding	chr13:55600065-55608018
chr13	55600044	55600066	+	GC_rich	Low_complexity	Low_complexity	chr13	55600064	55600066	+	ENSMUST00000133176.7,ENSMUSG00000021504.14	B4galt7	ENSMUSG00000021504.14	ENSMUST00000133176.7	protein_coding	chr13:55600065-55608802
chr13	55600044	55600066	+	GC_rich	Low_complexity	Low_complexity	chr13	55600064	55600066	+	ENSMUST00000064701.7,ENSMUSG00000021504.14	B4galt7	ENSMUSG00000021504.14	ENSMUST00000064701.7	protein_coding	chr13:55600065-55610442
chr13	55628069	55628283	-	URR1B	DNA	hAT-Charlie	chr13	55628280	55628282	+	ENSMUST00000165154.1,ENSMUSG00000021501.4	Caml	ENSMUSG00000021501.4	ENSMUST00000165154.1	protein_coding	chr13:55628281-55632411
chr13	55831413	55831459	+	(TCCC)n	Simple_repeat	Simple_repeat	chr13	55831424	55831426	-	ENSMUST00000021968.6,ENSMUSG00000021506.7	Pitx1	ENSMUSG00000021506.7	ENSMUST00000021968.6	protein_coding	chr13:55825051-55831425
chr13	56135389	56135473	+	C-rich	Low_complexity	Low_complexity	chr13	56135439	56135441	-	ENSMUST00000141031.7,ENSMUSG00000015937.15	H2afy	ENSMUSG00000015937.15	ENSMUST00000141031.7	protein_coding	chr13:56100889-56135440
chr13	56342423	56342528	-	U6	snRNA	snRNA	chr13	56342527	56342529	-	ENSMUST00000157524.1,ENSMUSG00000088149.1	Gm24716	ENSMUSG00000088149.1	ENSMUST00000157524.1	snRNA	chr13:56342425-56342528
chr13	56362809	56363041	+	ORR1B1	LTR	ERVL-MaLR	chr13	56362899	56362901	+	ENSMUST00000223775.1,ENSMUSG00000074885.4	Gm10782	ENSMUSG00000074885.4	ENSMUST00000223775.1	lincRNA	chr13:56362900-56368857
chr13	56362809	56363041	+	ORR1B1	LTR	ERVL-MaLR	chr13	56362900	56362902	+	ENSMUST00000099476.3,ENSMUSG00000074885.4	Gm10782	ENSMUSG00000074885.4	ENSMUST00000099476.3	lincRNA	chr13:56362901-56365769
chr13	56703849	56703882	+	(TG)n	Simple_repeat	Simple_repeat	chr13	56703880	56703882	+	ENSMUST00000183427.1,ENSMUSG00000098732.1	Gm27834	ENSMUSG00000098732.1	ENSMUST00000183427.1	misc_RNA	chr13:56703881-56704005
chr13	56895958	56896012	+	(CA)n	Simple_repeat	Simple_repeat	chr13	56895992	56895994	-	ENSMUST00000173817.8,ENSMUSG00000021541.14	Trpc7	ENSMUSG00000021541.14	ENSMUST00000173817.8	protein_coding	chr13:56773764-56895993
chr13	58146686	58147168	-	RLTR10C	LTR	ERVK	chr13	58146948	58146950	+	ENSMUST00000224280.1,ENSMUSG00000097717.2	1700066J03Rik	ENSMUSG00000097717.2	ENSMUST00000224280.1	processed_transcript	chr13:58146949-58148975
chr13	58264734	58264769	+	(A)n	Simple_repeat	Simple_repeat	chr13	58264733	58264735	-	ENSMUST00000224114.1,ENSMUSG00000021552.7	Gkap1	ENSMUSG00000021552.7	ENSMUST00000224114.1	protein_coding	chr13:58256707-58264734
chr13	58274169	58274197	+	GC_rich	Low_complexity	Low_complexity	chr13	58274187	58274189	-	ENSMUST00000091579.5,ENSMUSG00000021552.7	Gkap1	ENSMUSG00000021552.7	ENSMUST00000091579.5	protein_coding	chr13:58233346-58274188
chr13	58275628	58275741	+	B4	SINE	B4	chr13	58275698	58275700	-	ENSMUST00000223811.1,ENSMUSG00000021552.7	Gkap1	ENSMUSG00000021552.7	ENSMUST00000223811.1	protein_coding	chr13:58263955-58275699
chr13	58325201	58325278	+	ID4_	SINE	ID	chr13	58325266	58325268	+	ENSMUST00000104240.1,ENSMUSG00000077428.1	Gm24284	ENSMUSG00000077428.1	ENSMUST00000104240.1	snoRNA	chr13:58325267-58325408
chr13	58442330	58443183	+	RMER19B	LTR	ERVK	chr13	58443020	58443022	+	ENSMUST00000225848.1,ENSMUSG00000114654.1	Gm47918	ENSMUSG00000114654.1	ENSMUST00000225848.1	lincRNA	chr13:58443021-58444580
chr13	58762138	58762656	-	MLT1G	LTR	ERVL-MaLR	chr13	58762349	58762351	-	ENSMUST00000223707.1,ENSMUSG00000114384.1	4930455J16Rik	ENSMUSG00000114384.1	ENSMUST00000223707.1	lincRNA	chr13:58736408-58762350
chr13	58762138	58762656	-	MLT1G	LTR	ERVL-MaLR	chr13	58762310	58762312	-	ENSMUST00000225693.1,ENSMUSG00000114384.1	4930455J16Rik	ENSMUSG00000114384.1	ENSMUST00000225693.1	lincRNA	chr13:58741074-58762311
chr13	58762138	58762656	-	MLT1G	LTR	ERVL-MaLR	chr13	58762359	58762361	-	ENSMUST00000224184.1,ENSMUSG00000114384.1	4930455J16Rik	ENSMUSG00000114384.1	ENSMUST00000224184.1	lincRNA	chr13:58741944-58762360
chr13	58762138	58762656	-	MLT1G	LTR	ERVL-MaLR	chr13	58762346	58762348	-	ENSMUST00000223974.1,ENSMUSG00000114384.1	4930455J16Rik	ENSMUSG00000114384.1	ENSMUST00000223974.1	lincRNA	chr13:58743112-58762347
chr13	58762138	58762656	-	MLT1G	LTR	ERVL-MaLR	chr13	58762310	58762312	-	ENSMUST00000224680.1,ENSMUSG00000114384.1	4930455J16Rik	ENSMUSG00000114384.1	ENSMUST00000224680.1	lincRNA	chr13:58752715-58762311
chr13	58762138	58762656	-	MLT1G	LTR	ERVL-MaLR	chr13	58762384	58762386	+	ENSMUST00000224161.1,ENSMUSG00000114808.1	Gm47947	ENSMUSG00000114808.1	ENSMUST00000224161.1	lincRNA	chr13:58762385-58776543
chr13	58797271	58797582	-	ORR1D2	LTR	ERVL-MaLR	chr13	58797447	58797449	-	ENSMUST00000223670.1,ENSMUSG00000114231.1	Gm40968	ENSMUSG00000114231.1	ENSMUST00000223670.1	lincRNA	chr13:58775458-58797448
chr13	58826814	58827266	-	L4_C_Mam	LINE	RTE-X	chr13	58826993	58826995	-	ENSMUST00000225867.1,ENSMUSG00000114218.1	Gm47423	ENSMUSG00000114218.1	ENSMUST00000225867.1	antisense	chr13:58824218-58826994
chr13	58835655	58835898	-	B4A	SINE	B4	chr13	58835814	58835816	+	ENSMUST00000226021.1,ENSMUSG00000055254.15	Ntrk2	ENSMUSG00000055254.15	ENSMUST00000226021.1	protein_coding	chr13:58835815-58839278
chr13	59182783	59182925	-	L1M4a2	LINE	L1	chr13	59182815	59182817	-	ENSMUST00000224550.1,ENSMUSG00000114393.1	Gm47359	ENSMUSG00000114393.1	ENSMUST00000224550.1	lincRNA	chr13:59180297-59182816
chr13	59193787	59193826	+	(TTTTG)n	Simple_repeat	Simple_repeat	chr13	59193809	59193811	+	ENSMUST00000223884.1,ENSMUSG00000114854.1	Gm34354	ENSMUSG00000114854.1	ENSMUST00000223884.1	lincRNA	chr13:59193810-59201584
chr13	59217153	59217258	+	ORR1A1	LTR	ERVL-MaLR	chr13	59217171	59217173	-	ENSMUST00000225924.1,ENSMUSG00000114478.1	Gm34558	ENSMUSG00000114478.1	ENSMUST00000225924.1	lincRNA	chr13:59211622-59217172
chr13	59326608	59326976	-	ORR1B1	LTR	ERVL-MaLR	chr13	59326796	59326798	-	ENSMUST00000224998.1,ENSMUSG00000114240.1	Gm47360	ENSMUSG00000114240.1	ENSMUST00000224998.1	lincRNA	chr13:59323507-59326797
chr13	59585375	59585421	+	GC_rich	Low_complexity	Low_complexity	chr13	59585393	59585395	+	ENSMUST00000166923.8,ENSMUSG00000021555.15	Naa35	ENSMUSG00000021555.15	ENSMUST00000166923.8	protein_coding	chr13:59585394-59608817
chr13	59585375	59585421	+	GC_rich	Low_complexity	Low_complexity	chr13	59585419	59585421	+	ENSMUST00000225670.1,ENSMUSG00000021555.15	Naa35	ENSMUSG00000021555.15	ENSMUST00000225670.1	protein_coding	chr13:59585420-59609448
chr13	59609134	59609263	-	B1_Mus2	SINE	Alu	chr13	59609256	59609258	+	ENSMUST00000163395.7,ENSMUSG00000021555.15	Naa35	ENSMUSG00000021555.15	ENSMUST00000163395.7	protein_coding	chr13:59609257-59627633
chr13	59627645	59627676	+	(T)n	Simple_repeat	Simple_repeat	chr13	59627646	59627648	+	ENSMUST00000224194.1,ENSMUSG00000021555.15	Naa35	ENSMUSG00000021555.15	ENSMUST00000224194.1	protein_coding	chr13:59627647-59628688
chr13	59797095	59797227	-	RSINE1	SINE	B4	chr13	59797129	59797131	-	ENSMUST00000225944.1,ENSMUSG00000035248.9	Tut7	ENSMUSG00000035248.9	ENSMUST00000225944.1	protein_coding	chr13:59795036-59797130
chr13	59906946	59907565	+	RLTR17	LTR	ERVK	chr13	59907118	59907120	-	ENSMUST00000223864.1,ENSMUSG00000114490.1	Gm19866	ENSMUSG00000114490.1	ENSMUST00000223864.1	lincRNA	chr13:59901233-59907119
chr13	60211641	60212312	+	RMER19B2	LTR	ERVK	chr13	60211932	60211934	+	ENSMUST00000060705.2,ENSMUSG00000050765.3	Gm5084	ENSMUSG00000050765.3	ENSMUST00000060705.2	lincRNA	chr13:60211933-60212934
chr13	60293548	60293725	+	B3A	SINE	B2	chr13	60293671	60293673	+	ENSMUST00000117018.1,ENSMUSG00000080668.1	Gm24999	ENSMUSG00000080668.1	ENSMUST00000117018.1	miRNA	chr13:60293672-60293772
chr13	60426967	60427385	-	RMER17C	LTR	ERVK	chr13	60427197	60427199	-	ENSMUST00000225281.1,ENSMUSG00000114274.1	Gm35333	ENSMUSG00000114274.1	ENSMUST00000225281.1	lincRNA	chr13:60422785-60427198
chr13	60529303	60529411	+	(CA)n	Simple_repeat	Simple_repeat	chr13	60529408	60529410	-	ENSMUST00000117016.1,ENSMUSG00000080666.1	Gm25000	ENSMUSG00000080666.1	ENSMUST00000117016.1	miRNA	chr13:60529296-60529409
chr13	60622916	60622968	+	(TTTTTG)n	Simple_repeat	Simple_repeat	chr13	60622966	60622968	+	ENSMUST00000225376.1,ENSMUSG00000114501.1	Gm48582	ENSMUSG00000114501.1	ENSMUST00000225376.1	TEC	chr13:60622967-60629395
chr13	60641577	60641800	+	B4	SINE	B4	chr13	60641789	60641791	+	ENSMUST00000225897.1,ENSMUSG00000114277.1	Gm48583	ENSMUSG00000114277.1	ENSMUST00000225897.1	processed_pseudogene	chr13:60641790-60642009
chr13	60896778	60897001	+	Lx9	LINE	L1	chr13	60896893	60896895	-	ENSMUST00000225690.1,ENSMUSG00000114635.1	Gm49392	ENSMUSG00000114635.1	ENSMUST00000225690.1	protein_coding	chr13:60842621-60896894
chr13	60897006	60897155	+	B1_Mus2	SINE	Alu	chr13	60897052	60897054	-	ENSMUST00000225439.1,ENSMUSG00000074874.10	Ctla2b	ENSMUSG00000074874.10	ENSMUST00000225439.1	protein_coding	chr13:60895350-60897053
chr13	60928085	60928153	+	U4	snRNA	snRNA	chr13	60928085	60928087	+	ENSMUST00000122502.1,ENSMUSG00000084451.1	Gm24594	ENSMUSG00000084451.1	ENSMUST00000122502.1	snRNA	chr13:60928086-60928184
chr13	60940786	60940972	+	L1Md_A	LINE	L1	chr13	60940892	60940894	-	ENSMUST00000225936.1,ENSMUSG00000033834.7	Tpbpa	ENSMUSG00000033834.7	ENSMUST00000225936.1	protein_coding	chr13:60939950-60940893
chr13	60955026	60955360	+	ORR1A2	LTR	ERVL-MaLR	chr13	60955218	60955220	+	ENSMUST00000224761.1,ENSMUSG00000114502.1	Gm40975	ENSMUSG00000114502.1	ENSMUST00000224761.1	lincRNA	chr13:60955219-60959948
chr13	61330343	61336744	-	L1Md_A	LINE	L1	chr13	61336454	61336456	+	ENSMUST00000185094.1,ENSMUSG00000098860.1	Gm27704	ENSMUSG00000098860.1	ENSMUST00000185094.1	miRNA	chr13:61336455-61336561
chr13	61443852	61443968	+	Lx5c	LINE	L1	chr13	61443964	61443966	+	ENSMUST00000224020.1,ENSMUSG00000114405.1	Gm47825	ENSMUSG00000114405.1	ENSMUST00000224020.1	processed_pseudogene	chr13:61443965-61444195
chr13	61655121	61656787	+	MurSatRep1	Unknown	Unknown	chr13	61655302	61655304	+	ENSMUST00000222397.1,ENSMUSG00000113295.1	Gm49357	ENSMUSG00000113295.1	ENSMUST00000222397.1	lincRNA	chr13:61655303-61743770
chr13	61823430	61823864	-	MT2_Mm	LTR	ERVL	chr13	61823663	61823665	-	ENSMUST00000116801.1,ENSMUSG00000080451.1	Gm24193	ENSMUSG00000080451.1	ENSMUST00000116801.1	miRNA	chr13:61823544-61823664
chr13	61860105	61861606	+	MMSAT4	Satellite	Satellite	chr13	61860815	61860817	+	ENSMUST00000220769.1,ENSMUSG00000113626.1	Gm7240	ENSMUSG00000113626.1	ENSMUST00000220769.1	transcribed_processed_pseudogene	chr13:61860816-61861479
chr13	62012834	62013357	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr13	62013143	62013145	-	ENSMUST00000178476.1,ENSMUSG00000094096.1	Gm25649	ENSMUSG00000094096.1	ENSMUST00000178476.1	miRNA	chr13:62013035-62013144
chr13	62048662	62048859	+	B2_Mm1a	SINE	B2	chr13	62048847	62048849	+	ENSMUST00000221814.1,ENSMUSG00000113836.1	Gm3325	ENSMUSG00000113836.1	ENSMUST00000221814.1	transcribed_processed_pseudogene	chr13:62048848-62050209
chr13	62110203	62111319	+	MurSatRep1	Unknown	Unknown	chr13	62110439	62110441	+	ENSMUST00000221554.1,ENSMUSG00000113566.1	Gm40977	ENSMUSG00000113566.1	ENSMUST00000221554.1	lincRNA	chr13:62110440-62112047
chr13	62272273	62274289	+	MurSatRep1	Unknown	Unknown	chr13	62272760	62272762	+	ENSMUST00000221763.1,ENSMUSG00000113081.1	Gm3333	ENSMUSG00000113081.1	ENSMUST00000221763.1	transcribed_processed_pseudogene	chr13:62272761-62275253
chr13	62371365	62372121	-	MurSatRep1	Unknown	Unknown	chr13	62371935	62371937	-	ENSMUST00000107989.6,ENSMUSG00000094942.7	Gm3604	ENSMUSG00000094942.7	ENSMUST00000107989.6	protein_coding	chr13:62368863-62371936
chr13	62407405	62408410	-	MurSatRep1	Unknown	Unknown	chr13	62407877	62407879	-	ENSMUST00000221652.1,ENSMUSG00000113623.1	Gm48691	ENSMUSG00000113623.1	ENSMUST00000221652.1	transcribed_processed_pseudogene	chr13:62402493-62407878
chr13	62451544	62452141	-	L1Md_T	LINE	L1	chr13	62451608	62451610	-	ENSMUST00000221260.1,ENSMUSG00000113841.1	Gm48701	ENSMUSG00000113841.1	ENSMUST00000221260.1	TEC	chr13:62449317-62451609
chr13	62520122	62520734	-	MurSatRep1	Unknown	Unknown	chr13	62520450	62520452	-	ENSMUST00000082203.6,ENSMUSG00000074865.11	Zfp934	ENSMUSG00000074865.11	ENSMUST00000082203.6	protein_coding	chr13:62517500-62520451
chr13	62606711	62607688	-	MurSatRep1	Unknown	Unknown	chr13	62607498	62607500	-	ENSMUST00000091563.4,ENSMUSG00000072066.7	6720489N17Rik	ENSMUSG00000072066.7	ENSMUST00000091563.4	protein_coding	chr13:62605190-62607499
chr13	62642677	62643438	-	MurSatRep1	Unknown	Unknown	chr13	62643251	62643253	-	ENSMUST00000223394.1,ENSMUSG00000114172.1	Gm36298	ENSMUSG00000114172.1	ENSMUST00000223394.1	processed_pseudogene	chr13:62639886-62643252
chr13	62700912	62701118	-	MurSatRep1	Unknown	Unknown	chr13	62701045	62701047	-	ENSMUST00000222602.1,ENSMUSG00000074863.5	Platr25	ENSMUSG00000074863.5	ENSMUST00000222602.1	protein_coding	chr13:62700108-62701046
chr13	62701001	62701135	-	MMSAT4	Satellite	Satellite	chr13	62701045	62701047	-	ENSMUST00000222602.1,ENSMUSG00000074863.5	Platr25	ENSMUSG00000074863.5	ENSMUST00000222602.1	protein_coding	chr13:62700108-62701046
chr13	62724161	62724351	-	B3	SINE	B2	chr13	62724216	62724218	-	ENSMUST00000223219.1,ENSMUSG00000074863.5	Platr25	ENSMUSG00000074863.5	ENSMUST00000223219.1	protein_coding	chr13:62672737-62724217
chr13	62724161	62724351	-	B3	SINE	B2	chr13	62724208	62724210	-	ENSMUST00000223528.1,ENSMUSG00000074863.5	Platr25	ENSMUSG00000074863.5	ENSMUST00000223528.1	protein_coding	chr13:62673879-62724209
chr13	62726496	62726989	-	MT2_Mm	LTR	ERVL	chr13	62726688	62726690	-	ENSMUST00000143260.1,ENSMUSG00000074863.5	Platr25	ENSMUSG00000074863.5	ENSMUST00000143260.1	protein_coding	chr13:62699406-62726689
chr13	62736717	62737366	-	RMER17A2	LTR	ERVK	chr13	62737194	62737196	-	ENSMUST00000222940.1,ENSMUSG00000113078.1	Gm48734	ENSMUSG00000113078.1	ENSMUST00000222940.1	TEC	chr13:62734907-62737195
chr13	62776016	62777285	-	MurSatRep1	Unknown	Unknown	chr13	62777088	62777090	-	ENSMUST00000167516.2,ENSMUSG00000091183.5	Gm5141	ENSMUSG00000091183.5	ENSMUST00000167516.2	protein_coding	chr13:62773608-62777089
chr13	62791506	62791613	+	U6	snRNA	snRNA	chr13	62791506	62791508	+	ENSMUST00000180065.1,ENSMUSG00000095825.1	Gm25448	ENSMUSG00000095825.1	ENSMUST00000180065.1	snRNA	chr13:62791507-62791613
chr13	63009865	63010045	-	L1_Mur3	LINE	L1	chr13	63009958	63009960	+	ENSMUST00000220958.1,ENSMUSG00000113708.1	Gm47584	ENSMUSG00000113708.1	ENSMUST00000220958.1	TEC	chr13:63009959-63011240
chr13	63142488	63143483	-	RLTR10-int	LTR	ERVK	chr13	63142493	63142495	+	ENSMUST00000222801.1,ENSMUSG00000113203.1	Gm47587	ENSMUSG00000113203.1	ENSMUST00000222801.1	sense_intronic	chr13:63142494-63143934
chr13	63244218	63244288	-	IMPB_01	Satellite	Satellite	chr13	63244220	63244222	+	ENSMUST00000220806.1,ENSMUSG00000113326.1	Gm47586	ENSMUSG00000113326.1	ENSMUST00000220806.1	TEC	chr13:63244221-63246248
chr13	63273592	63273616	+	(T)n	Simple_repeat	Simple_repeat	chr13	63273599	63273601	+	ENSMUST00000220661.1,ENSMUSG00000114104.1	Gm47585	ENSMUSG00000114104.1	ENSMUST00000220661.1	TEC	chr13:63273600-63275911
chr13	63406022	63406500	-	MT2B1	LTR	ERVL	chr13	63406296	63406298	-	ENSMUST00000162375.7,ENSMUSG00000021461.17	Fancc	ENSMUSG00000021461.17	ENSMUST00000162375.7	protein_coding	chr13:63347473-63406297
chr13	63409633	63409935	-	MTD	LTR	ERVL-MaLR	chr13	63409767	63409769	-	ENSMUST00000160617.1,ENSMUSG00000021461.17	Fancc	ENSMUSG00000021461.17	ENSMUST00000160617.1	protein_coding	chr13:63402934-63409768
chr13	63414746	63414768	+	(A)n	Simple_repeat	Simple_repeat	chr13	63414766	63414768	-	ENSMUST00000220476.1,ENSMUSG00000113126.1	Gm47588	ENSMUSG00000113126.1	ENSMUST00000220476.1	TEC	chr13:63410918-63414767
chr13	63574893	63575227	+	GA-rich	Low_complexity	Low_complexity	chr13	63575050	63575052	+	ENSMUST00000220498.1,ENSMUSG00000113459.1	Gm30655	ENSMUSG00000113459.1	ENSMUST00000220498.1	lincRNA	chr13:63575051-63579648
chr13	63577803	63577962	-	B2_Mm1a	SINE	B2	chr13	63577809	63577811	+	ENSMUST00000222732.1,ENSMUSG00000113459.1	Gm30655	ENSMUSG00000113459.1	ENSMUST00000222732.1	lincRNA	chr13:63577810-63582562
chr13	63794049	63794168	+	MLT1A	LTR	ERVL-MaLR	chr13	63794105	63794107	+	ENSMUST00000222072.1,ENSMUSG00000114092.1	Gm47418	ENSMUSG00000114092.1	ENSMUST00000222072.1	lincRNA	chr13:63794106-63795428
chr13	63840582	63840676	-	L1M4	LINE	L1	chr13	63840583	63840585	+	ENSMUST00000222855.1,ENSMUSG00000021470.18	Ercc6l2	ENSMUSG00000021470.18	ENSMUST00000222855.1	protein_coding	chr13:63840584-63842848
chr13	64152554	64152589	+	GC_rich	Low_complexity	Low_complexity	chr13	64152580	64152582	+	ENSMUST00000221450.1,ENSMUSG00000114165.1	Gm47513	ENSMUSG00000114165.1	ENSMUST00000221450.1	TEC	chr13:64152581-64154596
chr13	64212199	64212348	+	MLT2B4	LTR	ERVL	chr13	64212281	64212283	-	ENSMUST00000223116.1,ENSMUSG00000033102.15	Cdc14b	ENSMUSG00000033102.15	ENSMUST00000223116.1	protein_coding	chr13:64196553-64212282
chr13	64266321	64266691	+	BGLII_B	LTR	ERVK	chr13	64266476	64266478	+	ENSMUST00000189419.1,ENSMUSG00000097101.3	1810034E14Rik	ENSMUSG00000097101.3	ENSMUST00000189419.1	antisense	chr13:64266477-64268148
chr13	64290931	64291078	+	B1_Mus1	SINE	Alu	chr13	64291076	64291078	+	ENSMUST00000222936.1,ENSMUSG00000113816.1	Gm47003	ENSMUSG00000113816.1	ENSMUST00000222936.1	antisense	chr13:64291077-64298039
chr13	64296436	64296524	-	U6	snRNA	snRNA	chr13	64296523	64296525	-	ENSMUST00000158467.1,ENSMUSG00000089092.1	Gm25654	ENSMUSG00000089092.1	ENSMUST00000158467.1	snRNA	chr13:64296437-64296524
chr13	64361718	64361796	+	B3A	SINE	B2	chr13	64361736	64361738	-	ENSMUST00000221966.1,ENSMUSG00000114072.1	Gm49230	ENSMUSG00000114072.1	ENSMUST00000221966.1	processed_pseudogene	chr13:64361343-64361737
chr13	64606627	64612862	-	L1Md_T	LINE	L1	chr13	64611859	64611861	+	ENSMUST00000222752.1,ENSMUSG00000113850.1	Gm47191	ENSMUSG00000113850.1	ENSMUST00000222752.1	transcribed_processed_pseudogene	chr13:64611860-64619498
chr13	64613861	64616094	-	L1_Mus3	LINE	L1	chr13	64615413	64615415	+	ENSMUST00000222525.1,ENSMUSG00000113850.1	Gm47191	ENSMUSG00000113850.1	ENSMUST00000222525.1	transcribed_processed_pseudogene	chr13:64615414-64615824
chr13	64619475	64619694	+	MLT1C	LTR	ERVL-MaLR	chr13	64619549	64619551	+	ENSMUST00000222315.1,ENSMUSG00000113124.1	Gm47193	ENSMUSG00000113124.1	ENSMUST00000222315.1	lincRNA	chr13:64619550-64625002
chr13	64684990	64685289	-	ORR1F	LTR	ERVL-MaLR	chr13	64685274	64685276	-	ENSMUST00000221940.1,ENSMUSG00000114168.1	Gm47194	ENSMUSG00000114168.1	ENSMUST00000221940.1	lincRNA	chr13:64674539-64685275
chr13	64910666	64916493	+	L1VL2	LINE	L1	chr13	64913971	64913973	+	ENSMUST00000221990.1,ENSMUSG00000114179.1	Eif1-ps2	ENSMUSG00000114179.1	ENSMUST00000221990.1	processed_pseudogene	chr13:64913972-64914310
chr13	65211963	65212236	-	Lx5c	LINE	L1	chr13	65212110	65212112	+	ENSMUST00000220741.1,ENSMUSG00000113500.1	Gm47249	ENSMUSG00000113500.1	ENSMUST00000220741.1	lincRNA	chr13:65212111-65214903
chr13	65253701	65253882	-	MRLTR33	LTR	ERVK	chr13	65253702	65253704	-	ENSMUST00000223117.1,ENSMUSG00000113238.1	Gm47251	ENSMUSG00000113238.1	ENSMUST00000223117.1	lincRNA	chr13:65252704-65253703
chr13	65264876	65265077	+	Lx4B	LINE	L1	chr13	65264877	65264879	-	ENSMUST00000222969.1,ENSMUSG00000112960.1	Gm47254	ENSMUSG00000112960.1	ENSMUST00000222969.1	unprocessed_pseudogene	chr13:65264677-65264878
chr13	65300835	65304034	-	L1_Mus1	LINE	L1	chr13	65302405	65302407	+	ENSMUST00000222364.1,ENSMUSG00000021514.18	Zfp369	ENSMUSG00000021514.18	ENSMUST00000222364.1	protein_coding	chr13:65302406-65304220
chr13	65397562	65397682	-	MMSAT4	Satellite	Satellite	chr13	65397677	65397679	-	ENSMUST00000220797.1,ENSMUSG00000113911.1	Gm21930	ENSMUSG00000113911.1	ENSMUST00000220797.1	processed_pseudogene	chr13:65396555-65397678
chr13	65397622	65398006	-	MurSatRep1	Unknown	Unknown	chr13	65397677	65397679	-	ENSMUST00000220797.1,ENSMUSG00000113911.1	Gm21930	ENSMUSG00000113911.1	ENSMUST00000220797.1	processed_pseudogene	chr13:65396555-65397678
chr13	65402055	65407820	+	Lx4B	LINE	L1	chr13	65404295	65404297	+	ENSMUST00000221482.1,ENSMUSG00000113388.1	Gm48111	ENSMUSG00000113388.1	ENSMUST00000221482.1	processed_pseudogene	chr13:65404296-65408136
chr13	65479087	65479298	-	MMSAT4	Satellite	Satellite	chr13	65479291	65479293	-	ENSMUST00000221462.1,ENSMUSG00000114031.1	Gm48136	ENSMUSG00000114031.1	ENSMUST00000221462.1	processed_pseudogene	chr13:65478385-65479292
chr13	65510102	65513047	+	MurSatRep1	Unknown	Unknown	chr13	65512677	65512679	+	ENSMUST00000081471.2,ENSMUSG00000063905.2	Gm10139	ENSMUSG00000063905.2	ENSMUST00000081471.2	protein_coding	chr13:65512678-65512848
chr13	65514166	65514300	+	MMSAT4	Satellite	Satellite	chr13	65514186	65514188	+	ENSMUST00000220634.1,ENSMUSG00000113008.1	Gm48171	ENSMUSG00000113008.1	ENSMUST00000220634.1	processed_pseudogene	chr13:65514187-65514978
chr13	65542198	65544407	-	ORR1B1-int	LTR	ERVL-MaLR	chr13	65542204	65542206	-	ENSMUST00000222390.1,ENSMUSG00000113482.1	Gm48167	ENSMUSG00000113482.1	ENSMUST00000222390.1	processed_pseudogene	chr13:65541990-65542205
chr13	65649537	65649671	+	MMSAT4	Satellite	Satellite	chr13	65649557	65649559	+	ENSMUST00000222090.1,ENSMUSG00000113870.1	Gm48185	ENSMUSG00000113870.1	ENSMUST00000222090.1	processed_pseudogene	chr13:65649558-65650349
chr13	65692298	65693552	-	MurSatRep1	Unknown	Unknown	chr13	65692995	65692997	-	ENSMUST00000220512.1,ENSMUSG00000113260.1	Gm19428	ENSMUSG00000113260.1	ENSMUST00000220512.1	transcribed_processed_pseudogene	chr13:65689613-65692996
chr13	65713358	65713645	-	MLT1G1	LTR	ERVL-MaLR	chr13	65713453	65713455	-	ENSMUST00000220573.1,ENSMUSG00000113260.1	Gm19428	ENSMUSG00000113260.1	ENSMUST00000220573.1	transcribed_processed_pseudogene	chr13:65692347-65713454
chr13	65762289	65762592	-	MurSatRep1	Unknown	Unknown	chr13	65762512	65762514	-	ENSMUST00000222893.1,ENSMUSG00000113712.1	Gm38428	ENSMUSG00000113712.1	ENSMUST00000222893.1	processed_pseudogene	chr13:65761225-65762513
chr13	65762462	65763215	-	MMSAT4	Satellite	Satellite	chr13	65762512	65762514	-	ENSMUST00000222893.1,ENSMUSG00000113712.1	Gm38428	ENSMUSG00000113712.1	ENSMUST00000222893.1	processed_pseudogene	chr13:65761225-65762513
chr13	65908222	65908339	+	MMSAT4	Satellite	Satellite	chr13	65908222	65908224	+	ENSMUST00000225676.1,ENSMUSG00000114625.1	Gm48218	ENSMUSG00000114625.1	ENSMUST00000225676.1	processed_pseudogene	chr13:65908223-65908904
chr13	65910485	65912528	+	ORR1B1-int	LTR	ERVL-MaLR	chr13	65912525	65912527	+	ENSMUST00000221384.1,ENSMUSG00000114013.1	Gm48219	ENSMUSG00000114013.1	ENSMUST00000221384.1	processed_pseudogene	chr13:65912526-65912759
chr13	65978692	65979756	-	MurSatRep1	Unknown	Unknown	chr13	65979385	65979387	-	ENSMUST00000223348.1,ENSMUSG00000113559.1	Gm40987	ENSMUSG00000113559.1	ENSMUST00000223348.1	lincRNA	chr13:65976627-65979386
chr13	65981896	65983238	+	RLTR45-int	LTR	ERVK	chr13	65982780	65982782	-	ENSMUST00000221856.1,ENSMUSG00000113559.1	Gm40987	ENSMUSG00000113559.1	ENSMUST00000221856.1	lincRNA	chr13:65976343-65982781
chr13	65981896	65983238	+	RLTR45-int	LTR	ERVK	chr13	65982790	65982792	-	ENSMUST00000220526.1,ENSMUSG00000113559.1	Gm40987	ENSMUSG00000113559.1	ENSMUST00000220526.1	lincRNA	chr13:65976720-65982791
chr13	66119085	66120339	+	MurSatRep1	Unknown	Unknown	chr13	66119546	66119548	+	ENSMUST00000092528.5,ENSMUSG00000095909.1	Gm10324	ENSMUSG00000095909.1	ENSMUST00000092528.5	protein_coding	chr13:66119547-66122836
chr13	66162935	66164053	+	MMSAT4	Satellite	Satellite	chr13	66163778	66163780	+	ENSMUST00000221192.1,ENSMUSG00000113477.1	Gm45965	ENSMUSG00000113477.1	ENSMUST00000221192.1	processed_pseudogene	chr13:66163779-66165062
chr13	66177322	66177707	-	Lx2B	LINE	L1	chr13	66177346	66177348	+	ENSMUST00000222837.1,ENSMUSG00000113156.1	Gm48223	ENSMUSG00000113156.1	ENSMUST00000222837.1	lincRNA	chr13:66177347-66178100
chr13	66227456	66227955	-	MMSAT4	Satellite	Satellite	chr13	66227572	66227574	-	ENSMUST00000167981.2,ENSMUSG00000091347.2	Gm10772	ENSMUSG00000091347.2	ENSMUST00000167981.2	protein_coding	chr13:66227319-66227573
chr13	66283356	66284338	-	MurSatRep1	Unknown	Unknown	chr13	66284066	66284068	-	ENSMUST00000224096.1,ENSMUSG00000114550.1	AC167192.1	ENSMUSG00000114550.1	ENSMUST00000224096.1	processed_pseudogene	chr13:66281136-66284067
chr13	66334873	66335213	-	ORR1A4	LTR	ERVL-MaLR	chr13	66334878	66334880	-	ENSMUST00000224794.1,ENSMUSG00000114328.1	Gm48246	ENSMUSG00000114328.1	ENSMUST00000224794.1	processed_pseudogene	chr13:66334682-66334879
chr13	66342235	66343483	-	MurSatRep1	Unknown	Unknown	chr13	66342934	66342936	-	ENSMUST00000224620.1,ENSMUSG00000114729.1	C330022B21Rik	ENSMUSG00000114729.1	ENSMUST00000224620.1	processed_pseudogene	chr13:66340586-66342935
chr13	66397528	66397857	-	ORR1B1-int	LTR	ERVL-MaLR	chr13	66397531	66397533	-	ENSMUST00000224269.1,ENSMUSG00000114629.1	Gm48244	ENSMUSG00000114629.1	ENSMUST00000224269.1	processed_pseudogene	chr13:66396552-66397532
chr13	66433092	66434355	-	MurSatRep1	Unknown	Unknown	chr13	66433894	66433896	-	ENSMUST00000091541.10,ENSMUSG00000074832.11	2410141K09Rik	ENSMUSG00000074832.11	ENSMUST00000091541.10	protein_coding	chr13:66418245-66433895
chr13	66525435	66526685	+	MurSatRep1	Unknown	Unknown	chr13	66525978	66525980	+	ENSMUST00000224643.1,ENSMUSG00000114777.1	Gm46427	ENSMUSG00000114777.1	ENSMUST00000224643.1	processed_pseudogene	chr13:66525979-66529344
chr13	66533693	66534030	+	ORR1A4	LTR	ERVL-MaLR	chr13	66534024	66534026	+	ENSMUST00000224365.1,ENSMUSG00000114685.1	Gm48351	ENSMUSG00000114685.1	ENSMUST00000224365.1	processed_pseudogene	chr13:66534025-66534222
chr13	66551117	66551990	-	MurSatRep1	Unknown	Unknown	chr13	66551219	66551221	-	ENSMUST00000224388.1,ENSMUSG00000114434.1	Gm48360	ENSMUSG00000114434.1	ENSMUST00000224388.1	processed_pseudogene	chr13:66549713-66551220
chr13	66572368	66573618	+	MurSatRep1	Unknown	Unknown	chr13	66572920	66572922	+	ENSMUST00000224484.1,ENSMUSG00000114426.1	Gm10769	ENSMUSG00000114426.1	ENSMUST00000224484.1	processed_pseudogene	chr13:66572921-66575911
chr13	66586667	66587858	+	L1Md_A	LINE	L1	chr13	66586915	66586917	-	ENSMUST00000183599.1,ENSMUSG00000098452.1	Gm27501	ENSMUSG00000098452.1	ENSMUST00000183599.1	miRNA	chr13:66586810-66586916
chr13	66672616	66673880	-	MurSatRep1	Unknown	Unknown	chr13	66673328	66673330	-	ENSMUST00000224116.1,ENSMUSG00000074830.4	Zfp640	ENSMUSG00000074830.4	ENSMUST00000224116.1	transcribed_processed_pseudogene	chr13:66669928-66673329
chr13	66740834	66741927	-	MurSatRep1	Unknown	Unknown	chr13	66741312	66741314	-	ENSMUST00000225542.1,ENSMUSG00000114839.1	Gm40989	ENSMUSG00000114839.1	ENSMUST00000225542.1	processed_pseudogene	chr13:66738371-66741313
chr13	66777252	66777479	+	RMER16-int	LTR	ERVK	chr13	66777440	66777442	+	ENSMUST00000223696.1,ENSMUSG00000114226.1	Gm48412	ENSMUSG00000114226.1	ENSMUST00000223696.1	lincRNA	chr13:66777441-66779142
chr13	66793558	66795575	-	MurSatRep1	Unknown	Unknown	chr13	66795023	66795025	-	ENSMUST00000224253.1,ENSMUSG00000114353.1	Gm7896	ENSMUSG00000114353.1	ENSMUST00000224253.1	transcribed_processed_pseudogene	chr13:66792070-66795024
chr13	66846033	66848078	-	ORR1B1-int	LTR	ERVL-MaLR	chr13	66846035	66846037	-	ENSMUST00000225417.1,ENSMUSG00000114793.1	Gm48414	ENSMUSG00000114793.1	ENSMUST00000225417.1	processed_pseudogene	chr13:66845824-66846036
chr13	66854156	66855421	-	MurSatRep1	Unknown	Unknown	chr13	66854870	66854872	-	ENSMUST00000224898.1,ENSMUSG00000114816.1	Gm10323	ENSMUSG00000114816.1	ENSMUST00000224898.1	processed_pseudogene	chr13:66849651-66854871
chr13	67048494	67050738	+	Lx5b	LINE	L1	chr13	67050734	67050736	+	ENSMUST00000223867.1,ENSMUSG00000114834.1	Gm48705	ENSMUSG00000114834.1	ENSMUST00000223867.1	processed_pseudogene	chr13:67050735-67051025
chr13	67060474	67060726	+	Lx8	LINE	L1	chr13	67060504	67060506	+	ENSMUST00000224641.1,ENSMUSG00000114516.1	Gm46440	ENSMUSG00000114516.1	ENSMUST00000224641.1	antisense	chr13:67060505-67076663
chr13	67114020	67114376	-	RLTR9A	LTR	ERVK	chr13	67114027	67114029	-	ENSMUST00000091526.3,ENSMUSG00000074824.3	Rslcan18	ENSMUSG00000074824.3	ENSMUST00000091526.3	protein_coding	chr13:67096613-67114028
chr13	67115973	67116356	+	ERVB7_2-LTR_MM	LTR	ERVK	chr13	67116262	67116264	-	ENSMUST00000189620.1,ENSMUSG00000074824.3	Rslcan18	ENSMUSG00000074824.3	ENSMUST00000189620.1	protein_coding	chr13:67111015-67116263
chr13	67117335	67121694	-	L1_Mus2	LINE	L1	chr13	67121659	67121661	+	ENSMUST00000224346.1,ENSMUSG00000057396.7	Zfp759	ENSMUSG00000057396.7	ENSMUST00000224346.1	protein_coding	chr13:67121660-67138742
chr13	67145176	67145707	-	MYSERV6-int	LTR	ERVK	chr13	67145365	67145367	-	ENSMUST00000223605.1,ENSMUSG00000114568.1	Gm48732	ENSMUSG00000114568.1	ENSMUST00000223605.1	lincRNA	chr13:67143672-67145366
chr13	67167804	67167927	+	MurSatRep1	Unknown	Unknown	chr13	67167810	67167812	+	ENSMUST00000225091.1,ENSMUSG00000114677.1	Gm48733	ENSMUSG00000114677.1	ENSMUST00000225091.1	transcribed_processed_pseudogene	chr13:67167811-67168740
chr13	67229793	67230242	-	MT2C_Mm	LTR	ERVL	chr13	67229968	67229970	-	ENSMUST00000225201.1,ENSMUSG00000114771.1	Gm49064	ENSMUSG00000114771.1	ENSMUST00000225201.1	lincRNA	chr13:67226997-67229969
chr13	67268369	67268470	-	RMER19C	LTR	ERVK	chr13	67268463	67268465	-	ENSMUST00000223990.1,ENSMUSG00000055480.7	Zfp458	ENSMUSG00000055480.7	ENSMUST00000223990.1	protein_coding	chr13:67257748-67268464
chr13	67291535	67291737	-	MurSatRep1	Unknown	Unknown	chr13	67291633	67291635	-	ENSMUST00000225338.1,ENSMUSG00000055341.10	Zfp457	ENSMUSG00000055341.10	ENSMUST00000225338.1	protein_coding	chr13:67288138-67291634
chr13	67294162	67294283	-	MMSAT4	Satellite	Satellite	chr13	67294220	67294222	-	ENSMUST00000224325.1,ENSMUSG00000055341.10	Zfp457	ENSMUSG00000055341.10	ENSMUST00000224325.1	protein_coding	chr13:67288143-67294221
chr13	67316282	67317656	-	MMSAT4	Satellite	Satellite	chr13	67317102	67317104	-	ENSMUST00000133177.2,ENSMUSG00000057842.14	Zfp595	ENSMUSG00000057842.14	ENSMUST00000133177.2	protein_coding	chr13:67313720-67317103
chr13	67347836	67347974	-	MurSatRep1	Unknown	Unknown	chr13	67347872	67347874	-	ENSMUST00000170543.1,ENSMUSG00000098781.1	Gm28044	ENSMUSG00000098781.1	ENSMUST00000170543.1	protein_coding	chr13:67320296-67347873
chr13	67390189	67390579	-	MMSAT4	Satellite	Satellite	chr13	67390474	67390476	+	ENSMUST00000225810.1,ENSMUSG00000114726.1	Gm48900	ENSMUSG00000114726.1	ENSMUST00000225810.1	antisense	chr13:67390475-67408858
chr13	67458755	67462143	+	Lx4A	LINE	L1	chr13	67459999	67460001	+	ENSMUST00000181249.1,ENSMUSG00000097244.1	Gm7928	ENSMUSG00000097244.1	ENSMUST00000181249.1	processed_pseudogene	chr13:67460000-67460700
chr13	67626948	67627330	+	IAPLTR2a	LTR	ERVK	chr13	67627288	67627290	-	ENSMUST00000225608.1,ENSMUSG00000021510.11	Zfp729a	ENSMUSG00000021510.11	ENSMUST00000225608.1	protein_coding	chr13:67621658-67627289
chr13	67661651	67661807	+	L1VL4	LINE	L1	chr13	67661744	67661746	-	ENSMUST00000220552.2,ENSMUSG00000048280.18	Zfp738	ENSMUSG00000048280.18	ENSMUST00000220552.2	protein_coding	chr13:67658796-67661745
chr13	67725139	67725438	-	MMSAT4	Satellite	Satellite	chr13	67725437	67725439	-	ENSMUST00000225752.1,ENSMUSG00000114887.1	Gm48894	ENSMUSG00000114887.1	ENSMUST00000225752.1	processed_pseudogene	chr13:67725060-67725438
chr13	67752247	67752286	+	(GGGA)n	Simple_repeat	Simple_repeat	chr13	67752274	67752276	+	ENSMUST00000181158.1,ENSMUSG00000044081.7	Zfp85os	ENSMUSG00000044081.7	ENSMUST00000181158.1	processed_transcript	chr13:67752275-67753804
chr13	67773336	67773460	-	MurSatRep1	Unknown	Unknown	chr13	67773450	67773452	-	ENSMUST00000171257.3,ENSMUSG00000052909.8	Gm9894	ENSMUSG00000052909.8	ENSMUST00000171257.3	unprocessed_pseudogene	chr13:67762714-67773451
chr13	67785848	67786029	-	B3	SINE	B2	chr13	67785956	67785958	+	ENSMUST00000180507.1,ENSMUSG00000090659.9	Zfp493	ENSMUSG00000090659.9	ENSMUST00000180507.1	protein_coding	chr13:67785957-67789919
chr13	67833224	67833347	+	MurSatRep1	Unknown	Unknown	chr13	67833229	67833231	+	ENSMUST00000222626.1,ENSMUSG00000058246.8	Gm10037	ENSMUSG00000058246.8	ENSMUST00000222626.1	protein_coding	chr13:67833230-67844035
chr13	67833224	67833347	+	MurSatRep1	Unknown	Unknown	chr13	67833234	67833236	+	ENSMUST00000060609.7,ENSMUSG00000058246.8	Gm10037	ENSMUSG00000058246.8	ENSMUST00000060609.7	protein_coding	chr13:67833235-67843113
chr13	67949460	67949928	+	MT2C_Mm	LTR	ERVL	chr13	67949750	67949752	+	ENSMUST00000221347.1,ENSMUSG00000113095.1	Gm7969	ENSMUSG00000113095.1	ENSMUST00000221347.1	lincRNA	chr13:67949751-67954507
chr13	67965192	67965660	+	MT2C_Mm	LTR	ERVL	chr13	67965482	67965484	+	ENSMUST00000220881.1,ENSMUSG00000112984.1	Gm48419	ENSMUSG00000112984.1	ENSMUST00000220881.1	lincRNA	chr13:67965483-67970239
chr13	67980924	67981392	+	MT2C_Mm	LTR	ERVL	chr13	67981214	67981216	+	ENSMUST00000222807.1,ENSMUSG00000113273.1	Gm48423	ENSMUSG00000113273.1	ENSMUST00000222807.1	lincRNA	chr13:67981215-67985971
chr13	68181006	68181462	+	MT2C_Mm	LTR	ERVL	chr13	68181293	68181295	+	ENSMUST00000221571.1,ENSMUSG00000113342.1	AA414992	ENSMUSG00000113342.1	ENSMUST00000221571.1	TEC	chr13:68181294-68182869
chr13	68356647	68357115	-	MT2C_Mm	LTR	ERVL	chr13	68356824	68356826	-	ENSMUST00000221830.1,ENSMUSG00000113050.1	Gm8016	ENSMUSG00000113050.1	ENSMUST00000221830.1	lincRNA	chr13:68353364-68356825
chr13	68491213	68491681	-	MT2C_Mm	LTR	ERVL	chr13	68491388	68491390	-	ENSMUST00000221886.1,ENSMUSG00000113394.1	Gm48436	ENSMUSG00000113394.1	ENSMUST00000221886.1	lincRNA	chr13:68488998-68491389
chr13	68594494	68594774	-	Lx4A	LINE	L1	chr13	68594721	68594723	-	ENSMUST00000223128.1,ENSMUSG00000112985.1	Gm48556	ENSMUSG00000112985.1	ENSMUST00000223128.1	antisense	chr13:68590481-68594722
chr13	68999467	68999628	+	GC_rich	Low_complexity	Low_complexity	chr13	68999540	68999542	-	ENSMUST00000022013.7,ENSMUSG00000021536.7	Adcy2	ENSMUSG00000021536.7	ENSMUST00000022013.7	protein_coding	chr13:68620043-68999541
chr13	69141144	69141430	+	MLT1C	LTR	ERVL-MaLR	chr13	69141228	69141230	+	ENSMUST00000181690.1,ENSMUSG00000097522.1	Gm26844	ENSMUSG00000097522.1	ENSMUST00000181690.1	lincRNA	chr13:69141229-69143965
chr13	69395138	69395601	-	RLTR9B2	LTR	ERVK	chr13	69395582	69395584	+	ENSMUST00000221615.1,ENSMUSG00000113595.1	Gm35514	ENSMUSG00000113595.1	ENSMUST00000221615.1	lincRNA	chr13:69395583-69396318
chr13	69534185	69534209	+	GC_rich	Low_complexity	Low_complexity	chr13	69534185	69534187	-	ENSMUST00000222497.1,ENSMUSG00000034575.13	Tent4a	ENSMUSG00000034575.13	ENSMUST00000222497.1	protein_coding	chr13:69529320-69534186
chr13	69534588	69534652	+	GC_rich	Low_complexity	Low_complexity	chr13	69534616	69534618	-	ENSMUST00000198607.4,ENSMUSG00000034575.13	Tent4a	ENSMUSG00000034575.13	ENSMUST00000198607.4	protein_coding	chr13:69497959-69534617
chr13	69772575	69772679	+	MLTR73	LTR	ERV1	chr13	69772631	69772633	-	ENSMUST00000222281.1,ENSMUSG00000112957.1	4930547H16Rik	ENSMUSG00000112957.1	ENSMUST00000222281.1	lincRNA	chr13:69771518-69772632
chr13	69802306	69802662	+	MLT1G1	LTR	ERVL-MaLR	chr13	69802394	69802396	+	ENSMUST00000223376.1,ENSMUSG00000021598.9	Med10	ENSMUSG00000021598.9	ENSMUST00000223376.1	protein_coding	chr13:69802395-69813799
chr13	69802306	69802662	+	MLT1G1	LTR	ERVL-MaLR	chr13	69802416	69802418	+	ENSMUST00000222387.1,ENSMUSG00000021598.9	Med10	ENSMUSG00000021598.9	ENSMUST00000222387.1	protein_coding	chr13:69802417-69813747
chr13	70026917	70027618	+	Lx	LINE	L1	chr13	70027362	70027364	-	ENSMUST00000189890.6,ENSMUSG00000099639.6	1700084F23Rik	ENSMUSG00000099639.6	ENSMUST00000189890.6	lincRNA	chr13:70004485-70027363
chr13	70232051	70232925	-	RMER17B	LTR	ERVK	chr13	70232821	70232823	+	ENSMUST00000222622.1,ENSMUSG00000113463.1	4930520P13Rik	ENSMUSG00000113463.1	ENSMUST00000222622.1	lincRNA	chr13:70232822-70248122
chr13	70422768	70423245	-	RLTR20A2	LTR	ERVK	chr13	70422780	70422782	-	ENSMUST00000220989.1,ENSMUSG00000114054.1	Gm47706	ENSMUSG00000114054.1	ENSMUST00000220989.1	processed_pseudogene	chr13:70422491-70422781
chr13	70573170	70573436	+	MTE-int	LTR	ERVL-MaLR	chr13	70573192	70573194	-	ENSMUST00000222738.1,ENSMUSG00000034525.7	Ice1	ENSMUSG00000034525.7	ENSMUST00000222738.1	protein_coding	chr13:70551707-70573193
chr13	70573170	70573436	+	MTE-int	LTR	ERVL-MaLR	chr13	70573240	70573242	+	ENSMUST00000187681.6,ENSMUSG00000101051.6	1700100L14Rik	ENSMUSG00000101051.6	ENSMUST00000187681.6	antisense	chr13:70573241-70576110
chr13	70573170	70573436	+	MTE-int	LTR	ERVL-MaLR	chr13	70573279	70573281	+	ENSMUST00000189028.1,ENSMUSG00000101051.6	1700100L14Rik	ENSMUSG00000101051.6	ENSMUST00000189028.1	antisense	chr13:70573280-70576105
chr13	70649972	70650350	+	L2a	LINE	L2	chr13	70650143	70650145	+	ENSMUST00000222964.1,ENSMUSG00000113334.1	D030007L05Rik	ENSMUSG00000113334.1	ENSMUST00000222964.1	lincRNA	chr13:70650144-70655979
chr13	70681927	70682233	-	MER31A	LTR	ERV1	chr13	70681965	70681967	-	ENSMUST00000222903.1,ENSMUSG00000113796.1	Gm36426	ENSMUSG00000113796.1	ENSMUST00000222903.1	lincRNA	chr13:70676716-70681966
chr13	70705961	70706305	-	Lx9	LINE	L1	chr13	70706232	70706234	+	ENSMUST00000222750.1,ENSMUSG00000113794.1	Gm36607	ENSMUSG00000113794.1	ENSMUST00000222750.1	antisense	chr13:70706233-70733207
chr13	70841782	70841934	+	GA-rich	Low_complexity	Low_complexity	chr13	70841810	70841812	-	ENSMUST00000080145.12,ENSMUSG00000049538.14	Adamts16	ENSMUSG00000049538.14	ENSMUST00000080145.12	protein_coding	chr13:70727802-70841811
chr13	70841782	70841934	+	GA-rich	Low_complexity	Low_complexity	chr13	70841810	70841812	-	ENSMUST00000109694.2,ENSMUSG00000049538.14	Adamts16	ENSMUSG00000049538.14	ENSMUST00000109694.2	protein_coding	chr13:70761317-70841811
chr13	70841782	70841934	+	GA-rich	Low_complexity	Low_complexity	chr13	70841807	70841809	-	ENSMUST00000130726.1,ENSMUSG00000049538.14	Adamts16	ENSMUSG00000049538.14	ENSMUST00000130726.1	protein_coding	chr13:70834827-70841808
chr13	71071570	71071912	-	Lx8b	LINE	L1	chr13	71071725	71071727	-	ENSMUST00000194509.1,ENSMUSG00000102303.1	Gm38191	ENSMUSG00000102303.1	ENSMUST00000194509.1	TEC	chr13:71068480-71071726
chr13	71107040	71107103	-	IMPB_01	Satellite	Satellite	chr13	71107088	71107090	+	ENSMUST00000116930.1,ENSMUSG00000080580.1	Mir466f-4	ENSMUSG00000080580.1	ENSMUST00000116930.1	miRNA	chr13:71107089-71107209
chr13	71487438	71487706	+	ORR1A3-int	LTR	ERVL-MaLR	chr13	71487606	71487608	+	ENSMUST00000221719.1,ENSMUSG00000113358.1	1700112M02Rik	ENSMUSG00000113358.1	ENSMUST00000221719.1	lincRNA	chr13:71487607-71612709
chr13	72455323	72455363	+	ID_B1	SINE	B4	chr13	72455339	72455341	-	ENSMUST00000075549.7,ENSMUSG00000094989.1	Rpl9-ps4	ENSMUSG00000094989.1	ENSMUST00000075549.7	processed_pseudogene	chr13:72454762-72455340
chr13	73273158	73273260	+	GA-rich	Low_complexity	Low_complexity	chr13	73273229	73273231	+	ENSMUST00000223190.1,ENSMUSG00000113485.1	Gm48000	ENSMUSG00000113485.1	ENSMUST00000223190.1	TEC	chr13:73273230-73273732
chr13	73471506	73471920	+	MTC	LTR	ERVL-MaLR	chr13	73471750	73471752	+	ENSMUST00000223060.1,ENSMUSG00000021608.15	Lpcat1	ENSMUSG00000021608.15	ENSMUST00000223060.1	protein_coding	chr13:73471751-73515125
chr13	73502860	73502885	+	(T)n	Simple_repeat	Simple_repeat	chr13	73502860	73502862	+	ENSMUST00000140431.1,ENSMUSG00000021608.15	Lpcat1	ENSMUSG00000021608.15	ENSMUST00000140431.1	protein_coding	chr13:73502861-73513841
chr13	73924581	73924729	+	B1_Mus1	SINE	Alu	chr13	73924709	73924711	-	ENSMUST00000175516.1,ENSMUSG00000095943.1	Gm25197	ENSMUSG00000095943.1	ENSMUST00000175516.1	miRNA	chr13:73924585-73924710
chr13	74052138	74052439	+	L1MC	LINE	L1	chr13	74052240	74052242	-	ENSMUST00000223417.1,ENSMUSG00000021572.9	Cep72	ENSMUSG00000021572.9	ENSMUST00000223417.1	protein_coding	chr13:74037633-74052241
chr13	74265263	74265605	-	ORR1A1	LTR	ERVL-MaLR	chr13	74265464	74265466	-	ENSMUST00000222649.1,ENSMUSG00000021575.16	Ahrr	ENSMUSG00000021575.16	ENSMUST00000222649.1	protein_coding	chr13:74222972-74265465
chr13	74265263	74265605	-	ORR1A1	LTR	ERVL-MaLR	chr13	74265464	74265466	-	ENSMUST00000222032.1,ENSMUSG00000021575.16	Ahrr	ENSMUSG00000021575.16	ENSMUST00000222032.1	protein_coding	chr13:74224860-74265465
chr13	74324225	74324353	-	B1_Mus1	SINE	Alu	chr13	74324255	74324257	-	ENSMUST00000161434.1,ENSMUSG00000021577.14	Sdha	ENSMUSG00000021577.14	ENSMUST00000161434.1	protein_coding	chr13:74322732-74324256
chr13	74382199	74382287	-	RMER12C	LTR	ERVK	chr13	74382198	74382200	-	ENSMUST00000223306.1,ENSMUSG00000113315.1	Gm8227	ENSMUSG00000113315.1	ENSMUST00000223306.1	processed_pseudogene	chr13:74381629-74382199
chr13	74438690	74438887	+	B3	SINE	B2	chr13	74438848	74438850	-	ENSMUST00000222130.1,ENSMUSG00000112964.1	E430024I08Rik	ENSMUSG00000112964.1	ENSMUST00000222130.1	lincRNA	chr13:74435547-74438849
chr13	74443852	74444191	+	Lx6	LINE	L1	chr13	74443993	74443995	-	ENSMUST00000223312.1,ENSMUSG00000112964.1	E430024I08Rik	ENSMUSG00000112964.1	ENSMUST00000223312.1	lincRNA	chr13:74435050-74443994
chr13	74474479	74474661	-	RMER17B	LTR	ERVK	chr13	74474642	74474644	+	ENSMUST00000231729.1,ENSMUSG00000116765.1	CT009718.2	ENSMUSG00000116765.1	ENSMUST00000231729.1	lincRNA	chr13:74474643-74476068
chr13	74482138	74483281	-	MurSatRep1	Unknown	Unknown	chr13	74482942	74482944	-	ENSMUST00000074369.6,ENSMUSG00000069208.9	Zfp825	ENSMUSG00000069208.9	ENSMUST00000074369.6	protein_coding	chr13:74480517-74482943
chr13	74556700	74556979	-	L1_Mus1	LINE	L1	chr13	74556947	74556949	-	ENSMUST00000221408.1,ENSMUSG00000113047.1	Gm47469	ENSMUSG00000113047.1	ENSMUST00000221408.1	lincRNA	chr13:74553910-74556948
chr13	74610014	74610036	+	(A)n	Simple_repeat	Simple_repeat	chr13	74610033	74610035	-	ENSMUST00000223059.1,ENSMUSG00000113204.1	Gm46430	ENSMUSG00000113204.1	ENSMUST00000223059.1	lincRNA	chr13:74607137-74610034
chr13	74700874	74701001	-	B1F1	SINE	Alu	chr13	74700884	74700886	-	ENSMUST00000221208.1,ENSMUSG00000021585.10	Cast	ENSMUSG00000021585.10	ENSMUST00000221208.1	protein_coding	chr13:74699105-74700885
chr13	75885225	75887379	+	L1_Mus1	LINE	L1	chr13	75885666	75885668	-	ENSMUST00000123353.1,ENSMUSG00000021589.13	Rhobtb3	ENSMUSG00000021589.13	ENSMUST00000123353.1	protein_coding	chr13:75872013-75885667
chr13	75966541	75967265	-	RLTR17C_Mm	LTR	ERVK	chr13	75967149	75967151	+	ENSMUST00000225553.1,ENSMUSG00000021590.7	Spata9	ENSMUSG00000021590.7	ENSMUST00000225553.1	protein_coding	chr13:75967150-75977708
chr13	76077210	76077703	-	MT2_Mm	LTR	ERVL	chr13	76077402	76077404	-	ENSMUST00000225642.1,ENSMUSG00000021592.17	Arsk	ENSMUSG00000021592.17	ENSMUST00000225642.1	protein_coding	chr13:76069485-76077403
chr13	76077210	76077703	-	MT2_Mm	LTR	ERVL	chr13	76077379	76077381	-	ENSMUST00000224262.1,ENSMUSG00000021592.17	Arsk	ENSMUSG00000021592.17	ENSMUST00000224262.1	protein_coding	chr13:76072155-76077380
chr13	76124541	76124691	-	RSINE1	SINE	B4	chr13	76124635	76124637	+	ENSMUST00000223635.1,ENSMUSG00000033991.9	Ttc37	ENSMUSG00000033991.9	ENSMUST00000223635.1	protein_coding	chr13:76124636-76128749
chr13	76180240	76180659	+	BGLII	LTR	ERVK	chr13	76180424	76180426	+	ENSMUST00000223902.1,ENSMUSG00000033991.9	Ttc37	ENSMUSG00000033991.9	ENSMUST00000223902.1	protein_coding	chr13:76180425-76190106
chr13	76198677	76199024	-	L1Md_F3	LINE	L1	chr13	76198990	76198992	+	ENSMUST00000225364.1,ENSMUSG00000114664.1	Gm48639	ENSMUSG00000114664.1	ENSMUST00000225364.1	TEC	chr13:76198991-76200866
chr13	76321218	76321389	+	(CAGGA)n	Simple_repeat	Simple_repeat	chr13	76321278	76321280	-	ENSMUST00000174991.1,ENSMUSG00000092732.1	Gm24025	ENSMUSG00000092732.1	ENSMUST00000174991.1	miRNA	chr13:76321204-76321279
chr13	76439255	76439376	-	MTC	LTR	ERVL-MaLR	chr13	76439330	76439332	+	ENSMUST00000225003.1,ENSMUSG00000114293.1	Gm48078	ENSMUSG00000114293.1	ENSMUST00000225003.1	processed_pseudogene	chr13:76439331-76439670
chr13	76825477	76825517	+	(CTG)n	Simple_repeat	Simple_repeat	chr13	76825482	76825484	+	ENSMUST00000149028.1,ENSMUSG00000021596.16	Mctp1	ENSMUSG00000021596.16	ENSMUST00000149028.1	protein_coding	chr13:76825483-76828283
chr13	77701732	77702225	+	MT2_Mm	LTR	ERVL	chr13	77702032	77702034	+	ENSMUST00000225709.1,ENSMUSG00000064138.14	Fam172a	ENSMUSG00000064138.14	ENSMUST00000225709.1	protein_coding	chr13:77702033-77724167
chr13	78197888	78197977	+	G-rich	Low_complexity	Low_complexity	chr13	78197929	78197931	-	ENSMUST00000127137.2,ENSMUSG00000069171.14	Nr2f1	ENSMUSG00000069171.14	ENSMUST00000127137.2	protein_coding	chr13:78189672-78197930
chr13	78202499	78202583	+	(GGAA)n	Simple_repeat	Simple_repeat	chr13	78202552	78202554	+	ENSMUST00000134705.1,ENSMUSG00000087143.9	A830082K12Rik	ENSMUSG00000087143.9	ENSMUST00000134705.1	antisense	chr13:78202553-78231386
chr13	78373786	78374279	+	MT2_Mm	LTR	ERVL	chr13	78374178	78374180	+	ENSMUST00000225777.1,ENSMUSG00000114632.1	Gm48399	ENSMUSG00000114632.1	ENSMUST00000225777.1	lincRNA	chr13:78374179-78384198
chr13	79454969	79455074	+	U6	snRNA	snRNA	chr13	79454969	79454971	+	ENSMUST00000179499.1,ENSMUSG00000096005.1	Gm24863	ENSMUSG00000096005.1	ENSMUST00000179499.1	snRNA	chr13:79454970-79455076
chr13	80158662	80158730	+	U4	snRNA	snRNA	chr13	80158662	80158664	+	ENSMUST00000122712.1,ENSMUSG00000084661.1	Gm24635	ENSMUSG00000084661.1	ENSMUST00000122712.1	snRNA	chr13:80158663-80158790
chr13	80886068	80886097	+	GC_rich	Low_complexity	Low_complexity	chr13	80886094	80886096	+	ENSMUST00000161441.1,ENSMUSG00000074794.10	Arrdc3	ENSMUSG00000074794.10	ENSMUST00000161441.1	protein_coding	chr13:80886095-80894320
chr13	80940983	80941153	-	AmnSINE1	SINE	Deu	chr13	80941058	80941060	+	ENSMUST00000224538.1,ENSMUSG00000114554.1	5430425K12Rik	ENSMUSG00000114554.1	ENSMUST00000224538.1	lincRNA	chr13:80941059-80948597
chr13	80940983	80941153	-	AmnSINE1	SINE	Deu	chr13	80941085	80941087	+	ENSMUST00000224509.1,ENSMUSG00000114554.1	5430425K12Rik	ENSMUSG00000114554.1	ENSMUST00000224509.1	lincRNA	chr13:80941086-80942073
chr13	80979293	80979642	+	ORR1A4	LTR	ERVL-MaLR	chr13	80979469	80979471	+	ENSMUST00000223992.1,ENSMUSG00000114479.1	Gm49375	ENSMUSG00000114479.1	ENSMUST00000223992.1	lincRNA	chr13:80979470-80983873
chr13	80979642	80981713	+	ORR1A4-int	LTR	ERVL-MaLR	chr13	80981143	80981145	+	ENSMUST00000225082.1,ENSMUSG00000097098.8	9330111N05Rik	ENSMUSG00000097098.8	ENSMUST00000225082.1	antisense	chr13:80981144-81124824
chr13	80979642	80981713	+	ORR1A4-int	LTR	ERVL-MaLR	chr13	80981143	80981145	+	ENSMUST00000181508.1,ENSMUSG00000097098.8	9330111N05Rik	ENSMUSG00000097098.8	ENSMUST00000181508.1	antisense	chr13:80981144-81128864
chr13	80992422	80992572	+	MTE2b	LTR	ERVL-MaLR	chr13	80992550	80992552	+	ENSMUST00000225882.1,ENSMUSG00000114773.1	Gm48568	ENSMUSG00000114773.1	ENSMUST00000225882.1	processed_pseudogene	chr13:80992551-80992800
chr13	81725012	81725057	-	MERVL-int	LTR	ERVL	chr13	81725027	81725029	-	ENSMUST00000224298.1,ENSMUSG00000114905.1	Gm48113	ENSMUSG00000114905.1	ENSMUST00000224298.1	processed_pseudogene	chr13:81723990-81725028
chr13	81929676	81929699	+	AT_rich	Low_complexity	Low_complexity	chr13	81929686	81929688	-	ENSMUST00000224647.1,ENSMUSG00000114634.1	F830210D05Rik	ENSMUSG00000114634.1	ENSMUST00000224647.1	TEC	chr13:81927785-81929687
chr13	82694700	82698414	-	Lx3_Mus	LINE	L1	chr13	82698332	82698334	-	ENSMUST00000198795.1,ENSMUSG00000106655.1	Mir3961	ENSMUSG00000106655.1	ENSMUST00000198795.1	miRNA	chr13:82698275-82698333
chr13	83189707	83189748	+	(GA)n	Simple_repeat	Simple_repeat	chr13	83189708	83189710	-	ENSMUST00000224835.1,ENSMUSG00000114735.1	Gm48156	ENSMUSG00000114735.1	ENSMUST00000224835.1	processed_pseudogene	chr13:83189565-83189709
chr13	83721312	83721468	+	CT-rich	Low_complexity	Low_complexity	chr13	83721380	83721382	+	ENSMUST00000131907.8,ENSMUSG00000050334.12	C130071C03Rik	ENSMUSG00000050334.12	ENSMUST00000131907.8	lincRNA	chr13:83721381-83741308
chr13	83721312	83721468	+	CT-rich	Low_complexity	Low_complexity	chr13	83721380	83721382	+	ENSMUST00000185281.6,ENSMUSG00000050334.12	C130071C03Rik	ENSMUSG00000050334.12	ENSMUST00000185281.6	lincRNA	chr13:83721381-83872680
chr13	83890988	83891555	+	Lx7	LINE	L1	chr13	83891207	83891209	+	ENSMUST00000185600.1,ENSMUSG00000100891.1	2810049E08Rik	ENSMUSG00000100891.1	ENSMUST00000185600.1	lincRNA	chr13:83891208-83928710
chr13	84182227	84182621	+	MTA_Mm	LTR	ERVL-MaLR	chr13	84182277	84182279	+	ENSMUST00000175099.1,ENSMUSG00000092840.1	Gm24331	ENSMUSG00000092840.1	ENSMUST00000175099.1	miRNA	chr13:84182278-84182344
chr13	84222100	84222131	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr13	84222099	84222101	-	ENSMUST00000185973.1,ENSMUSG00000097292.2	A230107N01Rik	ENSMUSG00000097292.2	ENSMUST00000185973.1	antisense	chr13:84220610-84222100
chr13	85211272	85211369	-	PB1D10	SINE	Alu	chr13	85211321	85211323	+	ENSMUST00000172029.1,ENSMUSG00000021548.10	Ccnh	ENSMUSG00000021548.10	ENSMUST00000172029.1	protein_coding	chr13:85211322-85213109
chr13	85225921	85226249	+	ORR1C2	LTR	ERVL-MaLR	chr13	85226004	85226006	-	ENSMUST00000149799.1,ENSMUSG00000021549.14	Rasa1	ENSMUSG00000021549.14	ENSMUST00000149799.1	protein_coding	chr13:85224202-85226005
chr13	85247186	85247310	+	B1_Mur2	SINE	Alu	chr13	85247259	85247261	-	ENSMUST00000153231.1,ENSMUSG00000021549.14	Rasa1	ENSMUSG00000021549.14	ENSMUST00000153231.1	protein_coding	chr13:85238185-85247260
chr13	85411904	85412044	+	MIRb	SINE	MIR	chr13	85411918	85411920	-	ENSMUST00000193837.1,ENSMUSG00000103196.1	Gm37641	ENSMUSG00000103196.1	ENSMUST00000193837.1	TEC	chr13:85411681-85411919
chr13	86725622	86726139	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr13	86725931	86725933	-	ENSMUST00000177693.1,ENSMUSG00000095933.1	Gm25700	ENSMUSG00000095933.1	ENSMUST00000177693.1	miRNA	chr13:86725823-86725932
chr13	87456575	87457084	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr13	87456777	87456779	+	ENSMUST00000103770.1,ENSMUSG00000076958.1	Gm24935	ENSMUSG00000076958.1	ENSMUST00000103770.1	miRNA	chr13:87456778-87456887
chr13	87979733	87980335	-	RMER19B2	LTR	ERVK	chr13	87980298	87980300	-	ENSMUST00000223836.1,ENSMUSG00000114960.1	Gm47649	ENSMUSG00000114960.1	ENSMUST00000223836.1	TEC	chr13:87977497-87980299
chr13	88185456	88185691	-	RMER10B	LTR	ERVL	chr13	88185455	88185457	-	ENSMUST00000183033.1,ENSMUSG00000098213.1	Gm27044	ENSMUSG00000098213.1	ENSMUST00000183033.1	processed_pseudogene	chr13:88184661-88185456
chr13	88520911	88521208	-	IAPLTR2b	LTR	ERVK	chr13	88521189	88521191	+	ENSMUST00000224910.1,ENSMUSG00000114273.1	Gm34585	ENSMUSG00000114273.1	ENSMUST00000224910.1	lincRNA	chr13:88521190-88578168
chr13	89927441	89927543	-	U6	snRNA	snRNA	chr13	89927542	89927544	-	ENSMUST00000158445.1,ENSMUSG00000089070.1	Gm24498	ENSMUSG00000089070.1	ENSMUST00000158445.1	snRNA	chr13:89927442-89927543
chr13	90760062	90760393	-	MLT1B	LTR	ERVL-MaLR	chr13	90760111	90760113	+	ENSMUST00000198614.1,ENSMUSG00000106360.1	Gm44338	ENSMUSG00000106360.1	ENSMUST00000198614.1	miRNA	chr13:90760112-90760221
chr13	90867464	90867606	-	L1MA4	LINE	L1	chr13	90867605	90867607	+	ENSMUST00000224274.1,ENSMUSG00000114589.1	Gm18518	ENSMUSG00000114589.1	ENSMUST00000224274.1	processed_pseudogene	chr13:90867606-90868605
chr13	91254962	91259519	-	L1Md_F	LINE	L1	chr13	91259375	91259377	+	ENSMUST00000225131.1,ENSMUSG00000114688.1	Gm47381	ENSMUSG00000114688.1	ENSMUST00000225131.1	lincRNA	chr13:91259376-91274954
chr13	91744755	91745004	-	7SK	RNA	RNA	chr13	91745003	91745005	-	ENSMUST00000122503.1,ENSMUSG00000084452.1	Gm24597	ENSMUSG00000084452.1	ENSMUST00000122503.1	misc_RNA	chr13:91744705-91745004
chr13	91752021	91752199	-	B2_Mm1a	SINE	B2	chr13	91752105	91752107	+	ENSMUST00000185055.1,ENSMUSG00000099004.1	Gm27656	ENSMUSG00000099004.1	ENSMUST00000185055.1	miRNA	chr13:91752106-91752185
chr13	91779248	91779652	-	MLT1C	LTR	ERVL-MaLR	chr13	91779327	91779329	+	ENSMUST00000159214.1,ENSMUSG00000021620.4	Acot12	ENSMUSG00000021620.4	ENSMUST00000159214.1	protein_coding	chr13:91779328-91784904
chr13	92250001	92250101	+	B1_Mur3	SINE	Alu	chr13	92250072	92250074	-	ENSMUST00000186392.1,ENSMUSG00000014850.15	Msh3	ENSMUSG00000014850.15	ENSMUST00000186392.1	protein_coding	chr13:92211886-92250073
chr13	92897808	92898316	+	RMER16_Mm	LTR	ERVK	chr13	92898285	92898287	+	ENSMUST00000225872.1,ENSMUSG00000114823.1	Gm31630	ENSMUSG00000114823.1	ENSMUST00000225872.1	processed_transcript	chr13:92898286-92907126
chr13	93192021	93192222	+	L1M4b	LINE	L1	chr13	93192134	93192136	-	ENSMUST00000224545.1,ENSMUSG00000042167.6	Tent2	ENSMUSG00000042167.6	ENSMUST00000224545.1	protein_coding	chr13:93176384-93192135
chr13	93192021	93192222	+	L1M4b	LINE	L1	chr13	93192110	93192112	-	ENSMUST00000224464.1,ENSMUSG00000042167.6	Tent2	ENSMUSG00000042167.6	ENSMUST00000224464.1	protein_coding	chr13:93184079-93192111
chr13	93499797	93499833	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	93499807	93499809	-	ENSMUST00000065537.8,ENSMUSG00000021690.10	Jmy	ENSMUSG00000021690.10	ENSMUST00000065537.8	protein_coding	chr13:93430101-93499808
chr13	93771624	93771687	+	GC_rich	Low_complexity	Low_complexity	chr13	93771629	93771631	+	ENSMUST00000091403.5,ENSMUSG00000042082.7	Arsb	ENSMUSG00000042082.7	ENSMUST00000091403.5	protein_coding	chr13:93771630-93943016
chr13	93923186	93923328	+	B1_Mus1	SINE	Alu	chr13	93923310	93923312	-	ENSMUST00000175365.1,ENSMUSG00000093106.1	Gm25534	ENSMUSG00000093106.1	ENSMUST00000175365.1	miRNA	chr13:93923187-93923311
chr13	93991697	93991930	+	ORR1D2	LTR	ERVL-MaLR	chr13	93991767	93991769	-	ENSMUST00000221440.1,ENSMUSG00000113791.1	Gm47216	ENSMUSG00000113791.1	ENSMUST00000221440.1	lincRNA	chr13:93983195-93991768
chr13	94140072	94140135	+	CT-rich	Low_complexity	Low_complexity	chr13	94140116	94140118	-	ENSMUST00000134284.1,ENSMUSG00000087319.1	Gm15907	ENSMUSG00000087319.1	ENSMUST00000134284.1	lincRNA	chr13:94137447-94140117
chr13	94294868	94295212	-	MTC	LTR	ERVL-MaLR	chr13	94295005	94295007	-	ENSMUST00000221222.1,ENSMUSG00000114055.1	Gm32089	ENSMUSG00000114055.1	ENSMUST00000221222.1	lincRNA	chr13:94289448-94295006
chr13	95053001	95053021	+	(A)n	Simple_repeat	Simple_repeat	chr13	95053017	95053019	-	ENSMUST00000160412.1,ENSMUSG00000021684.17	Pde8b	ENSMUSG00000021684.17	ENSMUST00000160412.1	protein_coding	chr13:95043468-95053018
chr13	95207816	95208283	+	MT2_Mm	LTR	ERVL	chr13	95208111	95208113	+	ENSMUST00000160351.1,ENSMUSG00000090033.1	Gm16243	ENSMUSG00000090033.1	ENSMUST00000160351.1	antisense	chr13:95208112-95208936
chr13	95323364	95323854	+	MT2B1	LTR	ERVL	chr13	95323611	95323613	+	ENSMUST00000221807.1,ENSMUSG00000041995.8	Zbed3	ENSMUSG00000041995.8	ENSMUST00000221807.1	protein_coding	chr13:95323612-95337841
chr13	95326681	95326810	-	B3A	SINE	B2	chr13	95326766	95326768	+	ENSMUST00000222456.1,ENSMUSG00000041995.8	Zbed3	ENSMUSG00000041995.8	ENSMUST00000222456.1	protein_coding	chr13:95326767-95336527
chr13	95332074	95334412	-	L1M2	LINE	L1	chr13	95332617	95332619	+	ENSMUST00000104192.1,ENSMUSG00000077380.1	Gm22661	ENSMUSG00000077380.1	ENSMUST00000104192.1	snoRNA	chr13:95332618-95332749
chr13	95896960	95897120	-	U1	snRNA	snRNA	chr13	95897119	95897121	-	ENSMUST00000083932.1,ENSMUSG00000065866.1	Gm24032	ENSMUSG00000065866.1	ENSMUST00000083932.1	snRNA	chr13:95896962-95897120
chr13	95984846	95985267	+	RMER17C	LTR	ERVK	chr13	95984849	95984851	-	ENSMUST00000182180.1,ENSMUSG00000051111.16	Sv2c	ENSMUSG00000051111.16	ENSMUST00000182180.1	protein_coding	chr13:95961163-95984850
chr13	95990219	95990276	-	PB1D10	SINE	Alu	chr13	95990225	95990227	-	ENSMUST00000220740.1,ENSMUSG00000051111.16	Sv2c	ENSMUSG00000051111.16	ENSMUST00000220740.1	protein_coding	chr13:95989133-95990226
chr13	96081372	96082017	+	Lx	LINE	L1	chr13	96081375	96081377	-	ENSMUST00000220449.1,ENSMUSG00000114133.1	Gm20075	ENSMUSG00000114133.1	ENSMUST00000220449.1	protein_coding	chr13:96079216-96081376
chr13	96104463	96104566	-	U6	snRNA	snRNA	chr13	96104561	96104563	-	ENSMUST00000157214.1,ENSMUSG00000087839.1	Gm23955	ENSMUSG00000087839.1	ENSMUST00000157214.1	snRNA	chr13:96104463-96104562
chr13	96355918	96357160	-	Lx10	LINE	L1	chr13	96357110	96357112	+	ENSMUST00000102388.1,ENSMUSG00000076343.1	Gm25213	ENSMUSG00000076343.1	ENSMUST00000102388.1	miRNA	chr13:96357111-96357223
chr13	96542631	96542737	+	G-rich	Low_complexity	Low_complexity	chr13	96542734	96542736	+	ENSMUST00000077672.11,ENSMUSG00000021669.15	Col4a3bp	ENSMUSG00000021669.15	ENSMUST00000077672.11	protein_coding	chr13:96542735-96637550
chr13	96542631	96542737	+	G-rich	Low_complexity	Low_complexity	chr13	96542734	96542736	+	ENSMUST00000109444.2,ENSMUSG00000021669.15	Col4a3bp	ENSMUSG00000021669.15	ENSMUST00000109444.2	protein_coding	chr13:96542735-96640167
chr13	96556069	96556580	-	Lx8	LINE	L1	chr13	96556231	96556233	+	ENSMUST00000222511.1,ENSMUSG00000113842.1	Gm48138	ENSMUSG00000113842.1	ENSMUST00000222511.1	TEC	chr13:96556232-96559111
chr13	96604991	96606178	-	Lx2B2	LINE	L1	chr13	96605676	96605678	+	ENSMUST00000223019.1,ENSMUSG00000114193.1	Gm48139	ENSMUSG00000114193.1	ENSMUST00000223019.1	TEC	chr13:96605677-96609591
chr13	96678113	96678513	-	MTC	LTR	ERVL-MaLR	chr13	96678122	96678124	-	ENSMUST00000221591.1,ENSMUSG00000113351.1	Gm48575	ENSMUSG00000113351.1	ENSMUST00000221591.1	processed_pseudogene	chr13:96677469-96678123
chr13	96897276	96897363	+	5S	rRNA	rRNA	chr13	96897275	96897277	+	ENSMUST00000184031.1,ENSMUSG00000099053.1	Gm27792	ENSMUSG00000099053.1	ENSMUST00000184031.1	rRNA	chr13:96897276-96897390
chr13	97034358	97034824	-	RMER16-int	LTR	ERVK	chr13	97034361	97034363	-	ENSMUST00000091377.4,ENSMUSG00000052075.7	1700029F12Rik	ENSMUSG00000052075.7	ENSMUST00000091377.4	protein_coding	chr13:97021864-97034362
chr13	97171439	97171481	-	L1MEd	LINE	L1	chr13	97171448	97171450	+	ENSMUST00000159321.1,ENSMUSG00000021666.16	Gfm2	ENSMUSG00000021666.16	ENSMUST00000159321.1	protein_coding	chr13:97171449-97177486
chr13	97459068	97459143	+	MLTR11A	LTR	ERVK	chr13	97459076	97459078	-	ENSMUST00000183250.1,ENSMUSG00000098238.1	Gm8756	ENSMUSG00000098238.1	ENSMUST00000183250.1	processed_pseudogene	chr13:97458149-97459077
chr13	97482566	97483206	+	RLTR17	LTR	ERVK	chr13	97482700	97482702	+	ENSMUST00000179324.1,ENSMUSG00000078952.9	Lncenc1	ENSMUSG00000078952.9	ENSMUST00000179324.1	lincRNA	chr13:97482701-97497007
chr13	97482566	97483206	+	RLTR17	LTR	ERVK	chr13	97482954	97482956	+	ENSMUST00000180371.1,ENSMUSG00000078952.9	Lncenc1	ENSMUSG00000078952.9	ENSMUST00000180371.1	lincRNA	chr13:97482955-97489700
chr13	97511130	97511211	+	MLT1C	LTR	ERVL-MaLR	chr13	97511203	97511205	+	ENSMUST00000225874.1,ENSMUSG00000114926.1	Gm2379	ENSMUSG00000114926.1	ENSMUST00000225874.1	lincRNA	chr13:97511204-97515730
chr13	98617545	98618341	+	RodERV21-int	LTR	ERV1	chr13	98617661	98617663	-	ENSMUST00000224567.1,ENSMUSG00000114521.1	Gm48050	ENSMUSG00000114521.1	ENSMUST00000224567.1	processed_transcript	chr13:98608411-98617662
chr13	98801158	98801350	+	B2_Mm1t	SINE	B2	chr13	98801171	98801173	+	ENSMUST00000225263.1,ENSMUSG00000114458.1	Gm47551	ENSMUSG00000114458.1	ENSMUST00000225263.1	antisense	chr13:98801172-98803736
chr13	98801361	98801510	+	B1_Mus2	SINE	Alu	chr13	98801409	98801411	-	ENSMUST00000223763.1,ENSMUSG00000114598.1	D130062J10Rik	ENSMUSG00000114598.1	ENSMUST00000223763.1	sense_intronic	chr13:98798611-98801410
chr13	98986971	98994558	-	RLTR4_MM-int	LTR	ERV1	chr13	98994150	98994152	+	ENSMUST00000224873.1,ENSMUSG00000114203.1	Gm35279	ENSMUSG00000114203.1	ENSMUST00000224873.1	lincRNA	chr13:98994151-98997418
chr13	99504388	99504507	-	MIR	SINE	MIR	chr13	99504438	99504440	-	ENSMUST00000223710.1,ENSMUSG00000114282.1	5330431K02Rik	ENSMUSG00000114282.1	ENSMUST00000223710.1	TEC	chr13:99502477-99504439
chr13	99975199	99975317	+	MER45C	DNA	hAT-Tip100	chr13	99975315	99975317	-	ENSMUST00000223013.1,ENSMUSG00000021646.9	Mccc2	ENSMUSG00000021646.9	ENSMUST00000223013.1	protein_coding	chr13:99958491-99975316
chr13	100126088	100126219	-	B1F	SINE	Alu	chr13	100126124	100126126	+	ENSMUST00000125572.1,ENSMUSG00000021645.16	Smn1	ENSMUSG00000021645.16	ENSMUST00000125572.1	protein_coding	chr13:100126125-100126935
chr13	100135378	100135483	-	B1F2	SINE	Alu	chr13	100135392	100135394	+	ENSMUST00000135355.1,ENSMUSG00000021645.16	Smn1	ENSMUSG00000021645.16	ENSMUST00000135355.1	protein_coding	chr13:100135393-100137450
chr13	100201949	100202285	-	ORR1E	LTR	ERVL-MaLR	chr13	100202091	100202093	-	ENSMUST00000117913.7,ENSMUSG00000078945.10	Naip2	ENSMUSG00000078945.10	ENSMUST00000117913.7	protein_coding	chr13:100144063-100202092
chr13	100201949	100202285	-	ORR1E	LTR	ERVL-MaLR	chr13	100201960	100201962	-	ENSMUST00000167986.2,ENSMUSG00000078945.10	Naip2	ENSMUSG00000078945.10	ENSMUST00000167986.2	protein_coding	chr13:100144231-100201961
chr13	100246249	100246432	-	MTC	LTR	ERVL-MaLR	chr13	100246322	100246324	-	ENSMUST00000049789.2,ENSMUSG00000071203.6	Naip5	ENSMUSG00000071203.6	ENSMUST00000049789.2	protein_coding	chr13:100211739-100246323
chr13	100316603	100316784	-	MTC	LTR	ERVL-MaLR	chr13	100316615	100316617	-	ENSMUST00000042220.2,ENSMUSG00000078942.10	Naip6	ENSMUSG00000078942.10	ENSMUST00000042220.2	protein_coding	chr13:100281121-100316616
chr13	100317534	100317785	-	ORR1E	LTR	ERVL-MaLR	chr13	100317673	100317675	-	ENSMUST00000118574.7,ENSMUSG00000078942.10	Naip6	ENSMUSG00000078942.10	ENSMUST00000118574.7	protein_coding	chr13:100281121-100317674
chr13	100452728	100453032	-	ORR1E	LTR	ERVL-MaLR	chr13	100452863	100452865	-	ENSMUST00000222155.1,ENSMUSG00000021640.6	Naip1	ENSMUSG00000021640.6	ENSMUST00000222155.1	protein_coding	chr13:100407770-100452864
chr13	100452728	100453032	-	ORR1E	LTR	ERVL-MaLR	chr13	100452868	100452870	-	ENSMUST00000221727.1,ENSMUSG00000021640.6	Naip1	ENSMUSG00000021640.6	ENSMUST00000221727.1	protein_coding	chr13:100426801-100452869
chr13	100462076	100462265	-	Lx8b	LINE	L1	chr13	100462156	100462158	-	ENSMUST00000232447.1,ENSMUSG00000021639.17	Gtf2h2	ENSMUSG00000021639.17	ENSMUST00000232447.1	protein_coding	chr13:100460289-100462157
chr13	100560028	100560082	+	B2_Mm2	SINE	B2	chr13	100560031	100560033	-	ENSMUST00000223825.1,ENSMUSG00000114332.1	Gm8847	ENSMUSG00000114332.1	ENSMUST00000223825.1	processed_pseudogene	chr13:100559402-100560032
chr13	100632325	100632494	+	RSINE1	SINE	B4	chr13	100632374	100632376	-	ENSMUST00000225155.1,ENSMUSG00000021635.14	Rad17	ENSMUSG00000021635.14	ENSMUST00000225155.1	protein_coding	chr13:100629516-100632375
chr13	100711933	100712084	+	B1_Mm	SINE	Alu	chr13	100711939	100711941	-	ENSMUST00000225946.1,ENSMUSG00000069089.8	Cdk7	ENSMUSG00000069089.8	ENSMUST00000225946.1	protein_coding	chr13:100706367-100711940
chr13	101547876	101548330	+	LTR33B	LTR	ERVL	chr13	101548151	101548153	-	ENSMUST00000225534.1,ENSMUSG00000114652.1	Gm41043	ENSMUSG00000114652.1	ENSMUST00000225534.1	processed_transcript	chr13:101543777-101548152
chr13	101547876	101548330	+	LTR33B	LTR	ERVL	chr13	101548132	101548134	-	ENSMUST00000226049.1,ENSMUSG00000114652.1	Gm41043	ENSMUSG00000114652.1	ENSMUST00000226049.1	processed_transcript	chr13:101546398-101548133
chr13	102228668	102228908	+	7SK	RNA	RNA	chr13	102228668	102228670	+	ENSMUST00000122784.1,ENSMUSG00000084733.1	Gm25808	ENSMUSG00000084733.1	ENSMUST00000122784.1	misc_RNA	chr13:102228669-102228952
chr13	102367136	102367187	+	(CATG)n	Simple_repeat	Simple_repeat	chr13	102367151	102367153	-	ENSMUST00000225142.1,ENSMUSG00000114444.1	Gm47008	ENSMUSG00000114444.1	ENSMUST00000225142.1	processed_pseudogene	chr13:102366891-102367152
chr13	102800845	102800950	-	PB1D11	SINE	Alu	chr13	102800920	102800922	-	ENSMUST00000185947.1,ENSMUSG00000034751.16	Mast4	ENSMUSG00000034751.16	ENSMUST00000185947.1	protein_coding	chr13:102796913-102800921
chr13	103162427	103164144	+	ORR1A2-int	LTR	ERVL-MaLR	chr13	103164068	103164070	-	ENSMUST00000147973.2,ENSMUSG00000091577.2	Gm6211	ENSMUSG00000091577.2	ENSMUST00000147973.2	transcribed_processed_pseudogene	chr13:103159795-103164069
chr13	103396201	103396291	+	5S	rRNA	rRNA	chr13	103396201	103396203	+	ENSMUST00000082521.1,ENSMUSG00000064455.1	n-R5s56	ENSMUSG00000064455.1	ENSMUST00000082521.1	rRNA	chr13:103396202-103396306
chr13	103420810	103421082	-	7SK	RNA	RNA	chr13	103421081	103421083	-	ENSMUST00000157235.1,ENSMUSG00000087860.1	Gm24441	ENSMUSG00000087860.1	ENSMUST00000157235.1	misc_RNA	chr13:103420802-103421082
chr13	103641925	103642032	+	U6	snRNA	snRNA	chr13	103641925	103641927	+	ENSMUST00000179897.1,ENSMUSG00000096642.1	Gm24870	ENSMUSG00000096642.1	ENSMUST00000179897.1	snRNA	chr13:103641926-103642032
chr13	103707429	103707828	-	MTC	LTR	ERVL-MaLR	chr13	103707632	103707634	-	ENSMUST00000225130.1,ENSMUSG00000114206.1	Gm30551	ENSMUSG00000114206.1	ENSMUST00000225130.1	lincRNA	chr13:103591395-103707633
chr13	103707429	103707828	-	MTC	LTR	ERVL-MaLR	chr13	103707618	103707620	-	ENSMUST00000225860.1,ENSMUSG00000114206.1	Gm30551	ENSMUSG00000114206.1	ENSMUST00000225860.1	lincRNA	chr13:103673738-103707619
chr13	103764504	103764586	+	(A)n	Simple_repeat	Simple_repeat	chr13	103764581	103764583	-	ENSMUST00000210489.1,ENSMUSG00000032621.8	Srek1	ENSMUSG00000032621.8	ENSMUST00000210489.1	protein_coding	chr13:103739348-103764582
chr13	103920194	103920302	+	LTR10_RN	LTR	ERVK	chr13	103920294	103920296	-	ENSMUST00000091269.10,ENSMUSG00000021709.14	Erbin	ENSMUSG00000021709.14	ENSMUST00000091269.10	protein_coding	chr13:103818791-103920295
chr13	103920194	103920302	+	LTR10_RN	LTR	ERVK	chr13	103920294	103920296	-	ENSMUST00000188997.6,ENSMUSG00000021709.14	Erbin	ENSMUSG00000021709.14	ENSMUST00000188997.6	protein_coding	chr13:103819607-103920295
chr13	103920194	103920302	+	LTR10_RN	LTR	ERVK	chr13	103920294	103920296	-	ENSMUST00000169083.7,ENSMUSG00000021709.14	Erbin	ENSMUSG00000021709.14	ENSMUST00000169083.7	protein_coding	chr13:103819607-103920295
chr13	103920194	103920302	+	LTR10_RN	LTR	ERVK	chr13	103920294	103920296	-	ENSMUST00000191275.6,ENSMUSG00000021709.14	Erbin	ENSMUSG00000021709.14	ENSMUST00000191275.6	protein_coding	chr13:103819607-103920295
chr13	104070236	104070337	-	PB1D10	SINE	Alu	chr13	104070242	104070244	-	ENSMUST00000225478.1,ENSMUSG00000021710.11	Nln	ENSMUSG00000021710.11	ENSMUST00000225478.1	protein_coding	chr13:104067524-104070243
chr13	104109639	104109751	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr13	104109740	104109742	+	ENSMUST00000044385.13,ENSMUSG00000042743.13	Sgtb	ENSMUSG00000042743.13	ENSMUST00000044385.13	protein_coding	chr13:104109741-104141735
chr13	104238066	104238460	+	MTA_Mm	LTR	ERVL-MaLR	chr13	104238268	104238270	+	ENSMUST00000224098.1,ENSMUSG00000021714.15	Cenpk	ENSMUSG00000021714.15	ENSMUST00000224098.1	protein_coding	chr13:104238269-104252392
chr13	104287755	104287877	+	(TC)n	Simple_repeat	Simple_repeat	chr13	104287834	104287836	+	ENSMUST00000224784.1,ENSMUSG00000046169.10	Adamts6	ENSMUSG00000046169.10	ENSMUST00000224784.1	protein_coding	chr13:104287835-104496695
chr13	104287755	104287877	+	(TC)n	Simple_repeat	Simple_repeat	chr13	104287870	104287872	+	ENSMUST00000223562.1,ENSMUSG00000046169.10	Adamts6	ENSMUSG00000046169.10	ENSMUST00000223562.1	protein_coding	chr13:104287871-104462317
chr13	104287755	104287877	+	(TC)n	Simple_repeat	Simple_repeat	chr13	104287872	104287874	+	ENSMUST00000065766.6,ENSMUSG00000046169.10	Adamts6	ENSMUSG00000046169.10	ENSMUST00000065766.6	protein_coding	chr13:104287873-104494763
chr13	104833935	104834080	-	B1_Mus2	SINE	Alu	chr13	104834045	104834047	+	ENSMUST00000147061.1,ENSMUSG00000021716.14	Srek1ip1	ENSMUSG00000021716.14	ENSMUST00000147061.1	protein_coding	chr13:104834046-104839271
chr13	105292873	105293540	-	RLTR48A	LTR	ERV1	chr13	105293013	105293015	-	ENSMUST00000224011.1,ENSMUSG00000021720.11	Rnf180	ENSMUSG00000021720.11	ENSMUST00000224011.1	protein_coding	chr13:105147494-105293014
chr13	105838446	105838568	+	A-rich	Low_complexity	Low_complexity	chr13	105838546	105838548	+	ENSMUST00000223900.1,ENSMUSG00000114564.1	Gm10739	ENSMUSG00000114564.1	ENSMUST00000223900.1	lincRNA	chr13:105838547-106019783
chr13	106197764	106198461	+	L1_Mur2	LINE	L1	chr13	106197770	106197772	-	ENSMUST00000205589.1,ENSMUSG00000108515.1	Olfr717-ps1	ENSMUSG00000108515.1	ENSMUST00000205589.1	unprocessed_pseudogene	chr13:106197216-106197771
chr13	106526379	106533360	-	L1Md_A	LINE	L1	chr13	106531816	106531818	-	ENSMUST00000224130.1,ENSMUSG00000114367.1	Gm48216	ENSMUSG00000114367.1	ENSMUST00000224130.1	processed_pseudogene	chr13:106530998-106531817
chr13	106787845	106788290	+	IAPLTR2_Mm	LTR	ERVK	chr13	106788069	106788071	+	ENSMUST00000187867.1,ENSMUSG00000101308.1	Gm28989	ENSMUSG00000101308.1	ENSMUST00000187867.1	antisense	chr13:106788070-106796796
chr13	106851780	106851994	+	MIR	SINE	MIR	chr13	106851899	106851901	+	ENSMUST00000191363.1,ENSMUSG00000100833.1	Gm28988	ENSMUSG00000100833.1	ENSMUST00000191363.1	antisense	chr13:106851900-106853846
chr13	106996668	106997040	-	MT2C_Mm	LTR	ERVL	chr13	106996755	106996757	-	ENSMUST00000117423.8,ENSMUSG00000021693.20	Kif2a	ENSMUSG00000021693.20	ENSMUST00000117423.8	protein_coding	chr13:106962123-106996756
chr13	107022088	107022218	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	107022117	107022119	-	ENSMUST00000022204.15,ENSMUSG00000021693.20	Kif2a	ENSMUSG00000021693.20	ENSMUST00000022204.15	protein_coding	chr13:106958996-107022118
chr13	107022088	107022218	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	107022113	107022115	-	ENSMUST00000122233.7,ENSMUSG00000021693.20	Kif2a	ENSMUSG00000021693.20	ENSMUST00000122233.7	protein_coding	chr13:106961260-107022114
chr13	107022088	107022218	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	107022125	107022127	-	ENSMUST00000159772.7,ENSMUSG00000021693.20	Kif2a	ENSMUSG00000021693.20	ENSMUST00000159772.7	protein_coding	chr13:106961852-107022126
chr13	107025272	107026086	-	RMER6A	LTR	ERVK	chr13	107025891	107025893	+	ENSMUST00000224293.1,ENSMUSG00000071181.2	3830408C21Rik	ENSMUSG00000071181.2	ENSMUST00000224293.1	processed_transcript	chr13:107025892-107031621
chr13	107032769	107033047	-	LTR16A	LTR	ERVL	chr13	107032879	107032881	+	ENSMUST00000224838.1,ENSMUSG00000071181.2	3830408C21Rik	ENSMUSG00000071181.2	ENSMUST00000224838.1	processed_transcript	chr13:107032880-107055497
chr13	107034080	107034546	+	RLTR12BD_Mm	LTR	ERVK	chr13	107034283	107034285	+	ENSMUST00000224166.1,ENSMUSG00000114893.1	Gm48684	ENSMUSG00000114893.1	ENSMUST00000224166.1	lincRNA	chr13:107034284-107035217
chr13	107063633	107063717	+	MLT1L	LTR	ERVL-MaLR	chr13	107063692	107063694	+	ENSMUST00000224811.1,ENSMUSG00000114311.1	Gm31452	ENSMUSG00000114311.1	ENSMUST00000224811.1	lincRNA	chr13:107063693-107099252
chr13	107063633	107063717	+	MLT1L	LTR	ERVL-MaLR	chr13	107063694	107063696	+	ENSMUST00000224729.1,ENSMUSG00000114311.1	Gm31452	ENSMUSG00000114311.1	ENSMUST00000224729.1	lincRNA	chr13:107063695-107087797
chr13	107564780	107565485	-	RMER19A	LTR	ERVK	chr13	107565322	107565324	-	ENSMUST00000225322.1,ENSMUSG00000114534.1	Gm32004	ENSMUSG00000114534.1	ENSMUST00000225322.1	processed_transcript	chr13:107524061-107565323
chr13	107564780	107565485	-	RMER19A	LTR	ERVK	chr13	107565328	107565330	-	ENSMUST00000224941.1,ENSMUSG00000114534.1	Gm32004	ENSMUSG00000114534.1	ENSMUST00000224941.1	processed_transcript	chr13:107524384-107565329
chr13	107564780	107565485	-	RMER19A	LTR	ERVK	chr13	107565325	107565327	-	ENSMUST00000224033.1,ENSMUSG00000114534.1	Gm32004	ENSMUSG00000114534.1	ENSMUST00000224033.1	processed_transcript	chr13:107524429-107565326
chr13	107564780	107565485	-	RMER19A	LTR	ERVK	chr13	107565330	107565332	-	ENSMUST00000224949.1,ENSMUSG00000114534.1	Gm32004	ENSMUSG00000114534.1	ENSMUST00000224949.1	processed_transcript	chr13:107537010-107565331
chr13	107612691	107613091	-	RMER17B	LTR	ERVK	chr13	107612848	107612850	-	ENSMUST00000224826.1,ENSMUSG00000114807.1	Gm32090	ENSMUSG00000114807.1	ENSMUST00000224826.1	lincRNA	chr13:107605284-107612849
chr13	107829222	107829383	+	(GAA)n	Simple_repeat	Simple_repeat	chr13	107829279	107829281	-	ENSMUST00000175593.2,ENSMUSG00000093334.2	Gm22118	ENSMUSG00000093334.2	ENSMUST00000175593.2	miRNA	chr13:107829110-107829280
chr13	107996115	107996665	+	MLT1E	LTR	ERVL-MaLR	chr13	107996284	107996286	+	ENSMUST00000224913.1,ENSMUSG00000114627.1	B230220B15Rik	ENSMUSG00000114627.1	ENSMUST00000224913.1	lincRNA	chr13:107996285-108003954
chr13	107998102	108000000	-	IAPEz-int	LTR	ERVK	chr13	107999100	107999102	+	ENSMUST00000224800.1,ENSMUSG00000114627.1	B230220B15Rik	ENSMUSG00000114627.1	ENSMUST00000224800.1	lincRNA	chr13:107999101-108004669
chr13	109324735	109324791	-	L3	LINE	CR1	chr13	109324743	109324745	+	ENSMUST00000103758.2,ENSMUSG00000076946.2	Mir582	ENSMUSG00000076946.2	ENSMUST00000103758.2	miRNA	chr13:109324744-109324824
chr13	110903253	110903662	+	LTR33A_	LTR	ERVL	chr13	110903498	110903500	+	ENSMUST00000224654.1,ENSMUSG00000114472.1	Gm38397	ENSMUSG00000114472.1	ENSMUST00000224654.1	lincRNA	chr13:110903499-110908280
chr13	111549876	111550221	+	ORR1B1	LTR	ERVL-MaLR	chr13	111549946	111549948	-	ENSMUST00000231096.1,ENSMUSG00000116016.1	Gm49496	ENSMUSG00000116016.1	ENSMUST00000231096.1	protein_coding	chr13:111439229-111549947
chr13	111549876	111550221	+	ORR1B1	LTR	ERVL-MaLR	chr13	111549910	111549912	-	ENSMUST00000132880.2,ENSMUSG00000085634.2	Gm15290	ENSMUSG00000085634.2	ENSMUST00000132880.2	lincRNA	chr13:111522350-111549911
chr13	111568553	111568700	+	L1MCa	LINE	L1	chr13	111568552	111568554	-	ENSMUST00000126640.1,ENSMUSG00000086870.1	Gm15288	ENSMUSG00000086870.1	ENSMUST00000126640.1	antisense	chr13:111561372-111568553
chr13	111580135	111580489	+	ORR1B1	LTR	ERVL-MaLR	chr13	111580260	111580262	+	ENSMUST00000156236.1,ENSMUSG00000086649.1	Gm15286	ENSMUSG00000086649.1	ENSMUST00000156236.1	processed_transcript	chr13:111580261-111644830
chr13	111592646	111592795	+	B1_Mur4	SINE	Alu	chr13	111592784	111592786	+	ENSMUST00000086960.2,ENSMUSG00000067122.2	Gm10198	ENSMUSG00000067122.2	ENSMUST00000086960.2	protein_coding	chr13:111592785-111592856
chr13	111616479	111616546	+	MER103C	DNA	hAT-Charlie	chr13	111616540	111616542	+	ENSMUST00000150623.1,ENSMUSG00000086649.1	Gm15286	ENSMUSG00000086649.1	ENSMUST00000150623.1	processed_transcript	chr13:111616541-111642835
chr13	111680637	111681202	+	MT2B	LTR	ERVL	chr13	111680978	111680980	+	ENSMUST00000231273.1,ENSMUSG00000032727.14	Mier3	ENSMUSG00000032727.14	ENSMUST00000231273.1	protein_coding	chr13:111680979-111706642
chr13	111686104	111686197	+	GC_rich	Low_complexity	Low_complexity	chr13	111686177	111686179	+	ENSMUST00000109272.8,ENSMUSG00000032727.14	Mier3	ENSMUSG00000032727.14	ENSMUST00000109272.8	protein_coding	chr13:111686178-111718596
chr13	111686246	111686280	+	(CGG)n	Simple_repeat	Simple_repeat	chr13	111686247	111686249	+	ENSMUST00000231979.1,ENSMUSG00000032727.14	Mier3	ENSMUSG00000032727.14	ENSMUST00000231979.1	protein_coding	chr13:111686248-111706082
chr13	111700455	111700822	-	IAPLTR1_Mm	LTR	ERVK	chr13	111700784	111700786	+	ENSMUST00000232398.1,ENSMUSG00000032727.14	Mier3	ENSMUSG00000032727.14	ENSMUST00000232398.1	protein_coding	chr13:111700785-111708326
chr13	111809076	111809178	+	G-rich	Low_complexity	Low_complexity	chr13	111809140	111809142	+	ENSMUST00000149252.1,ENSMUSG00000085204.1	Gm15327	ENSMUSG00000085204.1	ENSMUST00000149252.1	processed_transcript	chr13:111809141-111810923
chr13	112005210	112005532	+	Lx9	LINE	L1	chr13	112005501	112005503	+	ENSMUST00000156109.1,ENSMUSG00000086092.1	Gm15323	ENSMUSG00000086092.1	ENSMUST00000156109.1	lincRNA	chr13:112005502-112017332
chr13	112291120	112291267	+	U2	snRNA	snRNA	chr13	112291120	112291122	+	ENSMUST00000158366.1,ENSMUSG00000088991.1	Gm22768	ENSMUSG00000088991.1	ENSMUST00000158366.1	snRNA	chr13:112291121-112291273
chr13	112472593	112472771	+	MIRc	SINE	MIR	chr13	112472598	112472600	+	ENSMUST00000184445.7,ENSMUSG00000021756.12	Il6st	ENSMUSG00000021756.12	ENSMUST00000184445.7	protein_coding	chr13:112472599-112501141
chr13	112532303	112532507	+	B4	SINE	B4	chr13	112532343	112532345	-	ENSMUST00000223577.1,ENSMUSG00000050377.8	Il31ra	ENSMUSG00000050377.8	ENSMUST00000223577.1	protein_coding	chr13:112525846-112532344
chr13	113136042	113136185	+	ORR1A2	LTR	ERVL-MaLR	chr13	113136082	113136084	+	ENSMUST00000226043.1,ENSMUSG00000114333.1	1700084D21Rik	ENSMUSG00000114333.1	ENSMUST00000226043.1	lincRNA	chr13:113136083-113144012
chr13	113402995	113403103	-	Lx5c	LINE	L1	chr13	113403087	113403089	+	ENSMUST00000158189.1,ENSMUSG00000088814.1	Gm22385	ENSMUSG00000088814.1	ENSMUST00000158189.1	rRNA	chr13:113403088-113403188
chr13	113488927	113488957	+	(CAAT)n	Simple_repeat	Simple_repeat	chr13	113488955	113488957	+	ENSMUST00000225270.1,ENSMUSG00000114364.1	Gm47426	ENSMUSG00000114364.1	ENSMUST00000225270.1	processed_pseudogene	chr13:113488956-113489135
chr13	113502300	113502858	+	MER90a	LTR	ERV1	chr13	113502843	113502845	-	ENSMUST00000223835.1,ENSMUSG00000114790.1	4921509O07Rik	ENSMUSG00000114790.1	ENSMUST00000223835.1	lincRNA	chr13:113446288-113502844
chr13	113618562	113618594	+	GC_rich	Low_complexity	Low_complexity	chr13	113618563	113618565	-	ENSMUST00000109241.4,ENSMUSG00000042364.11	Snx18	ENSMUSG00000042364.11	ENSMUST00000109241.4	protein_coding	chr13:113592179-113618564
chr13	113762125	113762475	-	ORR1C1	LTR	ERVL-MaLR	chr13	113762127	113762129	-	ENSMUST00000225360.1,ENSMUSG00000114962.1	Gm6343	ENSMUSG00000114962.1	ENSMUST00000225360.1	processed_pseudogene	chr13:113761386-113762128
chr13	113794589	113794681	-	Tigger15a	DNA	TcMar-Tigger	chr13	113794592	113794594	+	ENSMUST00000224858.1,ENSMUSG00000042348.10	Arl15	ENSMUSG00000042348.10	ENSMUST00000224858.1	protein_coding	chr13:113794593-114156000
chr13	113794589	113794681	-	Tigger15a	DNA	TcMar-Tigger	chr13	113794621	113794623	+	ENSMUST00000224068.1,ENSMUSG00000042348.10	Arl15	ENSMUSG00000042348.10	ENSMUST00000224068.1	protein_coding	chr13:113794622-114155276
chr13	114241906	114243265	-	L1M3e	LINE	L1	chr13	114242639	114242641	-	ENSMUST00000225060.1,ENSMUSG00000114655.1	4631422I05Rik	ENSMUSG00000114655.1	ENSMUST00000225060.1	TEC	chr13:114240878-114242640
chr13	114607004	114607202	-	LTR78	LTR	ERV1	chr13	114607083	114607085	-	ENSMUST00000224961.1,ENSMUSG00000114879.1	4930467J12Rik	ENSMUSG00000114879.1	ENSMUST00000224961.1	lincRNA	chr13:114586513-114607084
chr13	115116126	115116223	+	U6	snRNA	snRNA	chr13	115116126	115116128	+	ENSMUST00000122677.1,ENSMUSG00000096021.1	Gm25985	ENSMUSG00000096021.1	ENSMUST00000122677.1	snRNA	chr13:115116127-115116233
chr13	115719481	115719717	-	RMER1B	Other	Other	chr13	115719498	115719500	-	ENSMUST00000225821.1,ENSMUSG00000114847.1	Gm47892	ENSMUSG00000114847.1	ENSMUST00000225821.1	processed_pseudogene	chr13:115719304-115719499
chr13	116090682	116097132	-	L1Md_T	LINE	L1	chr13	116096034	116096036	+	ENSMUST00000224590.1,ENSMUSG00000114956.1	Gm47893	ENSMUSG00000114956.1	ENSMUST00000224590.1	processed_pseudogene	chr13:116096035-116096300
chr13	116663300	116663976	-	Lx3_Mus	LINE	L1	chr13	116663535	116663537	-	ENSMUST00000224212.1,ENSMUSG00000114347.1	Gm47913	ENSMUSG00000114347.1	ENSMUST00000224212.1	lincRNA	chr13:116651448-116663536
chr13	116663300	116663976	-	Lx3_Mus	LINE	L1	chr13	116663590	116663592	-	ENSMUST00000225601.1,ENSMUSG00000114347.1	Gm47913	ENSMUSG00000114347.1	ENSMUST00000225601.1	lincRNA	chr13:116651577-116663591
chr13	116677417	116677781	-	ORR1B1	LTR	ERVL-MaLR	chr13	116677704	116677706	-	ENSMUST00000224048.1,ENSMUSG00000114731.1	Gm47914	ENSMUSG00000114731.1	ENSMUST00000224048.1	lincRNA	chr13:116558311-116677705
chr13	116837219	116842414	+	L1Md_F2	LINE	L1	chr13	116838177	116838179	-	ENSMUST00000224552.1,ENSMUSG00000114290.1	4930435F18Rik	ENSMUSG00000114290.1	ENSMUST00000224552.1	lincRNA	chr13:116802095-116838178
chr13	117129966	117130323	+	ORR1F	LTR	ERVL-MaLR	chr13	117130026	117130028	+	ENSMUST00000224375.1,ENSMUSG00000114792.1	Gm6416	ENSMUSG00000114792.1	ENSMUST00000224375.1	lincRNA	chr13:117130027-117135884
chr13	117719429	117720093	-	Lx3_Mus	LINE	L1	chr13	117720010	117720012	-	ENSMUST00000111588.8,ENSMUSG00000079048.8	4933413L06Rik	ENSMUSG00000079048.8	ENSMUST00000111588.8	antisense	chr13:117706764-117720011
chr13	117719429	117720093	-	Lx3_Mus	LINE	L1	chr13	117719986	117719988	-	ENSMUST00000110292.2,ENSMUSG00000079048.8	4933413L06Rik	ENSMUSG00000079048.8	ENSMUST00000110292.2	antisense	chr13:117707019-117719987
chr13	118555211	118555540	+	MTE2a	LTR	ERVL-MaLR	chr13	118555359	118555361	+	ENSMUST00000185602.6,ENSMUSG00000100727.6	1700003P14Rik	ENSMUSG00000100727.6	ENSMUST00000185602.6	lincRNA	chr13:118555360-118588704
chr13	118658474	118658997	+	LTR48B	LTR	ERV1	chr13	118658742	118658744	-	ENSMUST00000224103.1,ENSMUSG00000114613.1	Gm10732	ENSMUSG00000114613.1	ENSMUST00000224103.1	lincRNA	chr13:118603418-118658743
chr13	119269589	119269707	+	B1_Mur1	SINE	Alu	chr13	119269603	119269605	-	ENSMUST00000199467.1,ENSMUSG00000105411.1	Gm44488	ENSMUSG00000105411.1	ENSMUST00000199467.1	miRNA	chr13:119269486-119269604
chr13	119738283	119738557	-	MTD	LTR	ERVL-MaLR	chr13	119738393	119738395	-	ENSMUST00000178973.1,ENSMUSG00000095930.1	Nim1k	ENSMUSG00000095930.1	ENSMUST00000178973.1	protein_coding	chr13:119723483-119738394
chr13	119778021	119778943	+	HERVL40-int	LTR	ERVL	chr13	119778219	119778221	-	ENSMUST00000224969.1,ENSMUSG00000094870.8	Zfp131	ENSMUSG00000094870.8	ENSMUST00000224969.1	protein_coding	chr13:119776309-119778220
chr13	119790709	119790760	+	C-rich	Low_complexity	Low_complexity	chr13	119790731	119790733	-	ENSMUST00000223813.1,ENSMUSG00000094870.8	Zfp131	ENSMUSG00000094870.8	ENSMUST00000223813.1	protein_coding	chr13:119765792-119790732
chr13	119790709	119790760	+	C-rich	Low_complexity	Low_complexity	chr13	119790737	119790739	-	ENSMUST00000224946.1,ENSMUSG00000094870.8	Zfp131	ENSMUSG00000094870.8	ENSMUST00000224946.1	protein_coding	chr13:119775504-119790738
chr13	119813207	119813233	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr13	119813232	119813234	+	ENSMUST00000179475.1,ENSMUSG00000096182.1	Gm23308	ENSMUSG00000096182.1	ENSMUST00000179475.1	snRNA	chr13:119813233-119813339
chr13	119813233	119813339	+	U6	snRNA	snRNA	chr13	119813232	119813234	+	ENSMUST00000179475.1,ENSMUSG00000096182.1	Gm23308	ENSMUSG00000096182.1	ENSMUST00000179475.1	snRNA	chr13:119813233-119813339
chr13	119830003	119830354	-	MT2B1	LTR	ERVL	chr13	119830215	119830217	-	ENSMUST00000195234.1,ENSMUSG00000094237.2	AF067063	ENSMUSG00000094237.2	ENSMUST00000195234.1	protein_coding	chr13:119827961-119830216
chr13	119845235	119845554	+	MT2B1	LTR	ERVL	chr13	119845347	119845349	+	ENSMUST00000195797.1,ENSMUSG00000095514.2	D13Ertd608e	ENSMUSG00000095514.2	ENSMUST00000195797.1	protein_coding	chr13:119845348-119846570
chr13	119894603	119894925	-	MT2B1	LTR	ERVL	chr13	119894784	119894786	-	ENSMUST00000190512.1,ENSMUSG00000096284.2	Tcstv1	ENSMUSG00000096284.2	ENSMUST00000190512.1	protein_coding	chr13:119893388-119894785
chr13	119894603	119894925	-	MT2B1	LTR	ERVL	chr13	119894745	119894747	-	ENSMUST00000178510.1,ENSMUSG00000096284.2	Tcstv1	ENSMUSG00000096284.2	ENSMUST00000178510.1	protein_coding	chr13:119893467-119894746
chr13	119929087	119929574	-	MT2_Mm	LTR	ERVL	chr13	119929271	119929273	-	ENSMUST00000187530.2,ENSMUSG00000096175.3	Gm21761	ENSMUSG00000096175.3	ENSMUST00000187530.2	protein_coding	chr13:119912095-119929272
chr13	119950602	119950913	-	MT2B1	LTR	ERVL	chr13	119950805	119950807	-	ENSMUST00000180768.1,ENSMUSG00000078537.3	B020031M17Rik	ENSMUSG00000078537.3	ENSMUST00000180768.1	protein_coding	chr13:119949357-119950806
chr13	120017107	120017213	-	U6	snRNA	snRNA	chr13	120017212	120017214	-	ENSMUST00000177961.1,ENSMUSG00000095379.1	Gm22108	ENSMUSG00000095379.1	ENSMUST00000177961.1	snRNA	chr13:120017108-120017213
chr13	120017213	120017546	-	MLTR12	LTR	ERV1	chr13	120017212	120017214	-	ENSMUST00000177961.1,ENSMUSG00000095379.1	Gm22108	ENSMUSG00000095379.1	ENSMUST00000177961.1	snRNA	chr13:120017108-120017213
chr13	120045333	120045439	+	U6	snRNA	snRNA	chr13	120045333	120045335	+	ENSMUST00000179334.1,ENSMUSG00000093829.1	Gm24798	ENSMUSG00000093829.1	ENSMUST00000179334.1	snRNA	chr13:120045334-120045439
chr13	120139945	120140432	+	MT2_Mm	LTR	ERVL	chr13	120140245	120140247	+	ENSMUST00000225683.1,ENSMUSG00000096323.2	Gm20767	ENSMUSG00000096323.2	ENSMUST00000225683.1	protein_coding	chr13:120140246-120155335
chr13	120172300	120172620	+	MT2B1	LTR	ERVL	chr13	120172432	120172434	+	ENSMUST00000225144.1,ENSMUSG00000095653.2	Gm21818	ENSMUSG00000095653.2	ENSMUST00000225144.1	protein_coding	chr13:120172433-120173888
chr13	120215736	120216055	-	MT2B1	LTR	ERVL	chr13	120215946	120215948	-	ENSMUST00000225881.1,ENSMUSG00000094027.2	Gm21762	ENSMUSG00000094027.2	ENSMUST00000225881.1	protein_coding	chr13:120214593-120215947
chr13	120238973	120239324	+	MT2B1	LTR	ERVL	chr13	120239110	120239112	+	ENSMUST00000223770.1,ENSMUSG00000063846.8	Gm21731	ENSMUSG00000063846.8	ENSMUST00000223770.1	protein_coding	chr13:120239111-120241367
chr13	120262958	120263274	+	MT2B1	LTR	ERVL	chr13	120263113	120263115	+	ENSMUST00000181748.1,ENSMUSG00000095071.2	AF067061	ENSMUSG00000095071.2	ENSMUST00000181748.1	protein_coding	chr13:120263114-120264517
chr13	120262958	120263274	+	MT2B1	LTR	ERVL	chr13	120263190	120263192	+	ENSMUST00000179905.1,ENSMUSG00000095071.2	AF067061	ENSMUSG00000095071.2	ENSMUST00000179905.1	protein_coding	chr13:120263191-120264364
chr13	120316722	120317087	+	MT2B1	LTR	ERVL	chr13	120316877	120316879	+	ENSMUST00000223967.1,ENSMUSG00000095821.2	Tcstv3	ENSMUSG00000095821.2	ENSMUST00000223967.1	protein_coding	chr13:120316878-120318178
chr14	3293714	3299572	-	L1Md_F2	LINE	L1	chr14	3298550	3298552	+	ENSMUST00000112775.2,ENSMUSG00000079407.9	1700110I01Rik	ENSMUSG00000079407.9	ENSMUST00000112775.2	lincRNA	chr14:3298551-3305064
chr14	4265998	4266174	+	CT-rich	Low_complexity	Low_complexity	chr14	4266084	4266086	+	ENSMUST00000165425.1,ENSMUSG00000091368.1	Gm17085	ENSMUSG00000091368.1	ENSMUST00000165425.1	processed_pseudogene	chr14:4266085-4266586
chr14	5448824	5449188	-	L1_Mur1	LINE	L1	chr14	5449038	5449040	-	ENSMUST00000180143.1,ENSMUSG00000094825.8	Gm3194	ENSMUSG00000094825.8	ENSMUST00000180143.1	protein_coding	chr14:5439122-5449039
chr14	5801315	5801679	-	L1_Mur1	LINE	L1	chr14	5801529	5801531	-	ENSMUST00000178414.1,ENSMUSG00000096629.7	Gm3383	ENSMUSG00000096629.7	ENSMUST00000178414.1	protein_coding	chr14:5791613-5801530
chr14	7380897	7383389	+	L1Md_F	LINE	L1	chr14	7381918	7381920	-	ENSMUST00000225409.1,ENSMUSG00000071591.3	Gm10339	ENSMUSG00000071591.3	ENSMUST00000225409.1	lincRNA	chr14:7375423-7381919
chr14	7749925	7750045	+	RLTR6-int	LTR	ERV1	chr14	7749944	7749946	+	ENSMUST00000145085.2,ENSMUSG00000084775.2	Gm16741	ENSMUSG00000084775.2	ENSMUST00000145085.2	lincRNA	chr14:7749945-7775528
chr14	7774029	7774266	+	(CAG)n	Simple_repeat	Simple_repeat	chr14	7774068	7774070	-	ENSMUST00000163635.1,ENSMUSG00000072723.10	Gm10044	ENSMUSG00000072723.10	ENSMUST00000163635.1	processed_transcript	chr14:7764818-7774069
chr14	7774029	7774266	+	(CAG)n	Simple_repeat	Simple_repeat	chr14	7774138	7774140	-	ENSMUST00000172460.1,ENSMUSG00000072723.10	Gm10044	ENSMUSG00000072723.10	ENSMUST00000172460.1	processed_transcript	chr14:7770953-7774139
chr14	8098184	8098309	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	8098210	8098212	+	ENSMUST00000036682.8,ENSMUSG00000033885.15	Pxk	ENSMUSG00000033885.15	ENSMUST00000036682.8	protein_coding	chr14:8098211-8165117
chr14	8098184	8098309	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	8098212	8098214	+	ENSMUST00000112689.8,ENSMUSG00000033885.15	Pxk	ENSMUSG00000033885.15	ENSMUST00000112689.8	protein_coding	chr14:8098213-8165111
chr14	8098184	8098309	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	8098222	8098224	+	ENSMUST00000225827.1,ENSMUSG00000033885.15	Pxk	ENSMUSG00000033885.15	ENSMUST00000225827.1	protein_coding	chr14:8098223-8122485
chr14	8098184	8098309	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	8098251	8098253	+	ENSMUST00000225616.1,ENSMUSG00000033885.15	Pxk	ENSMUSG00000033885.15	ENSMUST00000225616.1	protein_coding	chr14:8098252-8145667
chr14	8098184	8098309	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	8098254	8098256	+	ENSMUST00000225653.1,ENSMUSG00000033885.15	Pxk	ENSMUSG00000033885.15	ENSMUST00000225653.1	protein_coding	chr14:8098255-8165111
chr14	8172110	8172387	+	L1MB4	LINE	L1	chr14	8172288	8172290	-	ENSMUST00000225274.1,ENSMUSG00000021748.9	Pdhb	ENSMUSG00000021748.9	ENSMUST00000225274.1	protein_coding	chr14:8170099-8172289
chr14	8367330	8367612	+	RMER17C	LTR	ERVK	chr14	8367439	8367441	+	ENSMUST00000225127.1,ENSMUSG00000114532.1	2610318M16Rik	ENSMUSG00000114532.1	ENSMUST00000225127.1	antisense	chr14:8367440-8371010
chr14	8378692	8378739	+	(TGG)n	Simple_repeat	Simple_repeat	chr14	8378721	8378723	-	ENSMUST00000224529.1,ENSMUSG00000021749.6	Oit1	ENSMUSG00000021749.6	ENSMUST00000224529.1	protein_coding	chr14:8364820-8378722
chr14	8858308	8860050	-	L1Md_T	LINE	L1	chr14	8860049	8860051	-	ENSMUST00000223780.1,ENSMUSG00000114413.1	Gm48364	ENSMUSG00000114413.1	ENSMUST00000223780.1	processed_pseudogene	chr14:8858989-8860050
chr14	8860049	8861957	+	Lx3C	LINE	L1	chr14	8860049	8860051	-	ENSMUST00000223780.1,ENSMUSG00000114413.1	Gm48364	ENSMUSG00000114413.1	ENSMUST00000223780.1	processed_pseudogene	chr14:8858989-8860050
chr14	9884193	9884261	+	ID4_	SINE	ID	chr14	9884194	9884196	+	ENSMUST00000224435.1,ENSMUSG00000089686.2	Mnd1-ps	ENSMUSG00000089686.2	ENSMUST00000224435.1	transcribed_processed_pseudogene	chr14:9884195-9886768
chr14	9904229	9904376	-	B1_Mus1	SINE	Alu	chr14	9904367	9904369	-	ENSMUST00000224071.1,ENSMUSG00000114691.1	Gm48438	ENSMUSG00000114691.1	ENSMUST00000224071.1	TEC	chr14:9901921-9904368
chr14	10018290	10019286	+	L1Md_A	LINE	L1	chr14	10018670	10018672	-	ENSMUST00000223773.1,ENSMUSG00000114467.1	Gm48430	ENSMUSG00000114467.1	ENSMUST00000223773.1	TEC	chr14:10017223-10018671
chr14	10478439	10478689	+	RLTR20B5_MM	LTR	ERVK	chr14	10478673	10478675	+	ENSMUST00000083394.1,ENSMUSG00000065328.1	Gm22053	ENSMUSG00000065328.1	ENSMUST00000083394.1	snoRNA	chr14:10478674-10478873
chr14	10738278	10738910	+	RMER17A2	LTR	ERVK	chr14	10738534	10738536	+	ENSMUST00000226067.1,ENSMUSG00000089833.2	Fhitos	ENSMUSG00000089833.2	ENSMUST00000226067.1	antisense	chr14:10738535-10783076
chr14	10738278	10738910	+	RMER17A2	LTR	ERVK	chr14	10738552	10738554	+	ENSMUST00000160149.1,ENSMUSG00000089833.2	Fhitos	ENSMUSG00000089833.2	ENSMUST00000160149.1	antisense	chr14:10738553-10779001
chr14	11282475	11282685	+	B3	SINE	B2	chr14	11282476	11282478	+	ENSMUST00000184251.1,ENSMUSG00000099218.1	Mir5124b	ENSMUSG00000099218.1	ENSMUST00000184251.1	miRNA	chr14:11282477-11282561
chr14	11354542	11358000	+	L1_Mus3	LINE	L1	chr14	11356725	11356727	-	ENSMUST00000181173.1,ENSMUSG00000097148.2	Gm3839	ENSMUSG00000097148.2	ENSMUST00000181173.1	protein_coding	chr14:11280735-11356726
chr14	11392477	11392916	+	L1Md_F	LINE	L1	chr14	11392559	11392561	+	ENSMUST00000223779.1,ENSMUSG00000114216.1	Gm48592	ENSMUSG00000114216.1	ENSMUST00000223779.1	processed_pseudogene	chr14:11392560-11392925
chr14	11867409	11867667	+	B4	SINE	B4	chr14	11867593	11867595	+	ENSMUST00000224051.1,ENSMUSG00000114431.1	Gm48601	ENSMUSG00000114431.1	ENSMUST00000224051.1	TEC	chr14:11867594-11870625
chr14	11904063	11904771	+	L1Md_T	LINE	L1	chr14	11904678	11904680	+	ENSMUST00000225771.1,ENSMUSG00000114267.1	Gm48600	ENSMUSG00000114267.1	ENSMUST00000225771.1	TEC	chr14:11904679-11909158
chr14	12164619	12165060	+	MT2_Mm	LTR	ERVL	chr14	12164889	12164891	+	ENSMUST00000223890.1,ENSMUSG00000021745.14	Ptprg	ENSMUSG00000021745.14	ENSMUST00000223890.1	protein_coding	chr14:12164890-12213679
chr14	12300291	12300545	+	B4A	SINE	B4	chr14	12300368	12300370	+	ENSMUST00000225052.1,ENSMUSG00000033111.16	3830406C13Rik	ENSMUSG00000033111.16	ENSMUST00000225052.1	protein_coding	chr14:12300369-12302837
chr14	12402129	12402230	+	B1_Mur4	SINE	Alu	chr14	12402229	12402231	-	ENSMUST00000225907.1,ENSMUSG00000114624.1	Gm48267	ENSMUSG00000114624.1	ENSMUST00000225907.1	TEC	chr14:12400698-12402230
chr14	12770325	12771727	+	L1MA5A	LINE	L1	chr14	12770549	12770551	-	ENSMUST00000225480.1,ENSMUSG00000114626.1	Gm48266	ENSMUSG00000114626.1	ENSMUST00000225480.1	TEC	chr14:12769408-12770550
chr14	13425609	13425900	+	L1MB8	LINE	L1	chr14	13425736	13425738	+	ENSMUST00000223583.1,ENSMUSG00000056296.17	Synpr	ENSMUSG00000056296.17	ENSMUST00000223583.1	protein_coding	chr14:13425737-13616340
chr14	13932743	13932998	+	RLTR1B-int	LTR	ERV1	chr14	13932893	13932895	+	ENSMUST00000159275.2,ENSMUSG00000079357.8	Gm11100	ENSMUSG00000079357.8	ENSMUST00000159275.2	processed_transcript	chr14:13932894-13949558
chr14	13957460	13957553	-	PB1D9	SINE	Alu	chr14	13957542	13957544	-	ENSMUST00000224652.1,ENSMUSG00000053453.9	Thoc7	ENSMUSG00000053453.9	ENSMUST00000224652.1	protein_coding	chr14:13950323-13957543
chr14	13957556	13957631	+	B3A	SINE	B2	chr14	13957630	13957632	-	ENSMUST00000226008.1,ENSMUSG00000053453.9	Thoc7	ENSMUSG00000053453.9	ENSMUST00000226008.1	protein_coding	chr14:13953118-13957631
chr14	13957631	13957647	+	B4A	SINE	B4	chr14	13957630	13957632	-	ENSMUST00000226008.1,ENSMUSG00000053453.9	Thoc7	ENSMUSG00000053453.9	ENSMUST00000226008.1	protein_coding	chr14:13953118-13957631
chr14	13961208	13961229	+	GC_rich	Low_complexity	Low_complexity	chr14	13961214	13961216	-	ENSMUST00000225401.1,ENSMUSG00000053453.9	Thoc7	ENSMUSG00000053453.9	ENSMUST00000225401.1	protein_coding	chr14:13949014-13961215
chr14	13961208	13961229	+	GC_rich	Low_complexity	Low_complexity	chr14	13961211	13961213	-	ENSMUST00000224015.1,ENSMUSG00000053453.9	Thoc7	ENSMUSG00000053453.9	ENSMUST00000224015.1	protein_coding	chr14:13949118-13961212
chr14	13961208	13961229	+	GC_rich	Low_complexity	Low_complexity	chr14	13961211	13961213	-	ENSMUST00000225202.1,ENSMUSG00000053453.9	Thoc7	ENSMUSG00000053453.9	ENSMUST00000225202.1	protein_coding	chr14:13950119-13961212
chr14	13961336	13961461	+	GC_rich	Low_complexity	Low_complexity	chr14	13961439	13961441	+	ENSMUST00000223880.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000223880.1	protein_coding	chr14:13961440-14103482
chr14	14013128	14013241	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	14013143	14013145	+	ENSMUST00000225164.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000225164.1	protein_coding	chr14:14013144-14013894
chr14	14013128	14013241	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	14013143	14013145	+	ENSMUST00000224370.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000224370.1	protein_coding	chr14:14013144-14036485
chr14	14013128	14013241	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	14013143	14013145	+	ENSMUST00000226073.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000226073.1	protein_coding	chr14:14013144-14070403
chr14	14013139	14013213	+	(CAG)n	Simple_repeat	Simple_repeat	chr14	14013143	14013145	+	ENSMUST00000225164.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000225164.1	protein_coding	chr14:14013144-14013894
chr14	14013139	14013213	+	(CAG)n	Simple_repeat	Simple_repeat	chr14	14013143	14013145	+	ENSMUST00000224370.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000224370.1	protein_coding	chr14:14013144-14036485
chr14	14013139	14013213	+	(CAG)n	Simple_repeat	Simple_repeat	chr14	14013143	14013145	+	ENSMUST00000226073.1,ENSMUSG00000021738.5	Atxn7	ENSMUSG00000021738.5	ENSMUST00000226073.1	protein_coding	chr14:14013144-14070403
chr14	14122420	14125106	-	Lx2A1	LINE	L1	chr14	14123569	14123571	+	ENSMUST00000226093.1,ENSMUSG00000114455.1	Gm48797	ENSMUSG00000114455.1	ENSMUST00000226093.1	processed_pseudogene	chr14:14123570-14123975
chr14	14254660	14258352	-	L1_Mus3	LINE	L1	chr14	14257502	14257504	-	ENSMUST00000226085.1,ENSMUSG00000114268.1	Gm48841	ENSMUSG00000114268.1	ENSMUST00000226085.1	processed_pseudogene	chr14:14254663-14257503
chr14	14254660	14258352	-	L1_Mus3	LINE	L1	chr14	14258285	14258287	+	ENSMUST00000225214.1,ENSMUSG00000114497.1	Gm48852	ENSMUSG00000114497.1	ENSMUST00000225214.1	processed_pseudogene	chr14:14258286-14258568
chr14	14371354	14371666	+	L1_Mus1	LINE	L1	chr14	14371647	14371649	+	ENSMUST00000225926.1,ENSMUSG00000114748.1	Gm6734	ENSMUSG00000114748.1	ENSMUST00000225926.1	processed_pseudogene	chr14:14371648-14372248
chr14	14428235	14433824	+	L1_Mus1	LINE	L1	chr14	14429176	14429178	+	ENSMUST00000223720.1,ENSMUSG00000114257.1	Gm47654	ENSMUSG00000114257.1	ENSMUST00000223720.1	processed_pseudogene	chr14:14429177-14430245
chr14	14584704	14590970	-	L1_Mus2	LINE	L1	chr14	14589215	14589217	-	ENSMUST00000225279.1,ENSMUSG00000114676.1	Gm47678	ENSMUSG00000114676.1	ENSMUST00000225279.1	processed_pseudogene	chr14:14585369-14589216
chr14	14584704	14590970	-	L1_Mus2	LINE	L1	chr14	14589945	14589947	+	ENSMUST00000223638.1,ENSMUSG00000114574.1	Gm47685	ENSMUSG00000114574.1	ENSMUST00000223638.1	processed_pseudogene	chr14:14589946-14590314
chr14	14702154	14702302	-	B1_Mus1	SINE	Alu	chr14	14702278	14702280	+	ENSMUST00000057015.7,ENSMUSG00000021733.10	Slc4a7	ENSMUSG00000021733.10	ENSMUST00000057015.7	protein_coding	chr14:14702279-14799940
chr14	14785793	14785948	+	L1_Mus1	LINE	L1	chr14	14785926	14785928	+	ENSMUST00000225613.1,ENSMUSG00000021733.10	Slc4a7	ENSMUSG00000021733.10	ENSMUST00000225613.1	protein_coding	chr14:14785927-14788304
chr14	14803305	14803617	+	L1Md_F2	LINE	L1	chr14	14803414	14803416	+	ENSMUST00000224491.1,ENSMUSG00000042567.20	Nek10	ENSMUSG00000042567.20	ENSMUST00000224491.1	protein_coding	chr14:14803415-15012059
chr14	15065213	15065343	-	MER58A	DNA	hAT-Charlie	chr14	15065215	15065217	-	ENSMUST00000225500.1,ENSMUSG00000114538.1	Gm31517	ENSMUSG00000114538.1	ENSMUST00000225500.1	lincRNA	chr14:15015189-15065216
chr14	15065213	15065343	-	MER58A	DNA	hAT-Charlie	chr14	15065230	15065232	-	ENSMUST00000224074.1,ENSMUSG00000114538.1	Gm31517	ENSMUSG00000114538.1	ENSMUST00000224074.1	lincRNA	chr14:15053313-15065231
chr14	15065213	15065343	-	MER58A	DNA	hAT-Charlie	chr14	15065230	15065232	-	ENSMUST00000225603.1,ENSMUSG00000114538.1	Gm31517	ENSMUSG00000114538.1	ENSMUST00000225603.1	lincRNA	chr14:15056311-15065231
chr14	15110214	15111014	-	Lx9	LINE	L1	chr14	15110332	15110334	-	ENSMUST00000224589.1,ENSMUSG00000114770.1	4921522A10Rik	ENSMUSG00000114770.1	ENSMUST00000224589.1	lincRNA	chr14:15104124-15110333
chr14	15120977	15126161	+	L1Md_T	LINE	L1	chr14	15120976	15120978	-	ENSMUST00000226077.1,ENSMUSG00000114946.1	Gm47756	ENSMUSG00000114946.1	ENSMUST00000226077.1	TEC	chr14:15118313-15120977
chr14	15225700	15226169	-	MMERVK10C-int	LTR	ERVK	chr14	15226165	15226167	-	ENSMUST00000224931.1,ENSMUSG00000114711.1	Gm47759	ENSMUSG00000114711.1	ENSMUST00000224931.1	processed_pseudogene	chr14:15223952-15226166
chr14	15316293	15317263	+	MTEb-int	LTR	ERVL-MaLR	chr14	15316544	15316546	-	ENSMUST00000225656.1,ENSMUSG00000114789.1	Gm31577	ENSMUSG00000114789.1	ENSMUST00000225656.1	lincRNA	chr14:15310289-15316545
chr14	15456199	15456348	-	LTR16A1	LTR	ERVL	chr14	15456330	15456332	+	ENSMUST00000224637.1,ENSMUSG00000114266.1	Gm10403	ENSMUSG00000114266.1	ENSMUST00000224637.1	TEC	chr14:15456331-15458041
chr14	15876333	15876679	+	MTE2a	LTR	ERVL-MaLR	chr14	15876627	15876629	+	ENSMUST00000225441.1,ENSMUSG00000114513.1	Gm47780	ENSMUSG00000114513.1	ENSMUST00000225441.1	lincRNA	chr14:15876628-15879459
chr14	15911255	15911579	+	IAPLTR2b	LTR	ERVK	chr14	15911314	15911316	-	ENSMUST00000225517.1,ENSMUSG00000114794.1	Gm47782	ENSMUSG00000114794.1	ENSMUST00000225517.1	lincRNA	chr14:15797715-15911315
chr14	16268538	16268608	+	L2b	LINE	L2	chr14	16268540	16268542	+	ENSMUST00000223879.1,ENSMUSG00000021785.8	Ngly1	ENSMUSG00000021785.8	ENSMUST00000223879.1	protein_coding	chr14:16268541-16270957
chr14	16270839	16271428	-	L1MB3	LINE	L1	chr14	16271088	16271090	+	ENSMUST00000224044.1,ENSMUSG00000114419.1	5430414B19Rik	ENSMUSG00000114419.1	ENSMUST00000224044.1	sense_intronic	chr14:16271089-16271838
chr14	18021836	18022069	-	ORR1E	LTR	ERVL-MaLR	chr14	18021900	18021902	-	ENSMUST00000225876.1,ENSMUSG00000114504.1	Gm48321	ENSMUSG00000114504.1	ENSMUST00000225876.1	antisense	chr14:17931138-18021901
chr14	18021836	18022069	-	ORR1E	LTR	ERVL-MaLR	chr14	18021908	18021910	-	ENSMUST00000224512.1,ENSMUSG00000114504.1	Gm48321	ENSMUSG00000114504.1	ENSMUST00000224512.1	antisense	chr14:17932298-18021909
chr14	18059690	18060605	+	RLTR25A	LTR	ERVK	chr14	18060274	18060276	+	ENSMUST00000183529.1,ENSMUSG00000098478.1	Gm27851	ENSMUSG00000098478.1	ENSMUST00000183529.1	snRNA	chr14:18060275-18060337
chr14	18199143	18200712	-	L1_Mur3	LINE	L1	chr14	18200674	18200676	+	ENSMUST00000198558.1,ENSMUSG00000105635.1	Gm44469	ENSMUSG00000105635.1	ENSMUST00000198558.1	miRNA	chr14:18200675-18200753
chr14	18331838	18331882	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr14	18331858	18331860	-	ENSMUST00000022296.6,ENSMUSG00000021774.13	Ube2e1	ENSMUSG00000021774.13	ENSMUST00000022296.6	protein_coding	chr14:18282722-18331859
chr14	18445874	18446029	+	U1	snRNA	snRNA	chr14	18445874	18445876	+	ENSMUST00000083924.1,ENSMUSG00000065858.1	Gm22350	ENSMUSG00000065858.1	ENSMUST00000083924.1	snRNA	chr14:18445875-18446030
chr14	18591262	18597261	-	L1_Mus1	LINE	L1	chr14	18597240	18597242	-	ENSMUST00000176672.1,ENSMUSG00000058317.12	Ube2e2	ENSMUSG00000058317.12	ENSMUST00000176672.1	protein_coding	chr14:18574363-18597241
chr14	18893640	18893685	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	18893644	18893646	-	ENSMUST00000177259.7,ENSMUSG00000058317.12	Ube2e2	ENSMUSG00000058317.12	ENSMUST00000177259.7	protein_coding	chr14:18630323-18893645
chr14	18893640	18893685	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	18893644	18893646	-	ENSMUST00000177398.7,ENSMUSG00000058317.12	Ube2e2	ENSMUSG00000058317.12	ENSMUST00000177398.7	protein_coding	chr14:18630393-18893645
chr14	19271258	19271745	+	RLTR10-int	LTR	ERVK	chr14	19271273	19271275	+	ENSMUST00000224018.1,ENSMUSG00000114304.1	Gm48099	ENSMUSG00000114304.1	ENSMUST00000224018.1	lincRNA	chr14:19271274-19282822
chr14	19415682	19419702	+	GSAT_MM	Satellite	Satellite	chr14	19418929	19418931	-	ENSMUST00000177817.1,ENSMUSG00000095280.1	Gm21738	ENSMUSG00000095280.1	ENSMUST00000177817.1	protein_coding	chr14:19415857-19418930
chr14	19617890	19623468	+	L1Md_F	LINE	L1	chr14	19618888	19618890	-	ENSMUST00000224339.1,ENSMUSG00000114214.1	Gm41102	ENSMUSG00000114214.1	ENSMUST00000224339.1	lincRNA	chr14:19612403-19618889
chr14	19977029	19977127	+	(CAGCC)n	Simple_repeat	Simple_repeat	chr14	19977058	19977060	-	ENSMUST00000159028.7,ENSMUSG00000043004.13	Gng2	ENSMUSG00000043004.13	ENSMUST00000159028.7	protein_coding	chr14:19875696-19977059
chr14	20310481	20310516	+	A-rich	Low_complexity	Low_complexity	chr14	20310489	20310491	+	ENSMUST00000223566.1,ENSMUSG00000021809.10	Nudt13	ENSMUSG00000021809.10	ENSMUST00000223566.1	protein_coding	chr14:20310490-20316221
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348221	20348223	+	ENSMUST00000225942.1,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000225942.1	protein_coding	chr14:20348222-20383276
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348221	20348223	+	ENSMUST00000051915.6,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000051915.6	protein_coding	chr14:20348222-20383489
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348221	20348223	+	ENSMUST00000090499.12,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000090499.12	protein_coding	chr14:20348222-20383491
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348238	20348240	+	ENSMUST00000225834.1,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000225834.1	protein_coding	chr14:20348239-20383489
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348259	20348261	+	ENSMUST00000224721.1,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000224721.1	protein_coding	chr14:20348260-20371342
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348259	20348261	+	ENSMUST00000090503.11,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000090503.11	protein_coding	chr14:20348260-20383491
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348261	20348263	+	ENSMUST00000225991.1,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000225991.1	protein_coding	chr14:20348262-20378494
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348264	20348266	+	ENSMUST00000037698.12,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000037698.12	protein_coding	chr14:20348265-20368067
chr14	20348216	20348283	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	20348274	20348276	+	ENSMUST00000224079.1,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000224079.1	protein_coding	chr14:20348275-20376287
chr14	20359420	20359592	+	L1M3	LINE	L1	chr14	20359481	20359483	+	ENSMUST00000224670.1,ENSMUSG00000039599.16	Fam149b	ENSMUSG00000039599.16	ENSMUST00000224670.1	protein_coding	chr14:20359482-20375754
chr14	20515915	20516202	+	L1MB7	LINE	L1	chr14	20516015	20516017	-	ENSMUST00000162107.1,ENSMUSG00000021816.11	Ppp3cb	ENSMUSG00000021816.11	ENSMUST00000162107.1	protein_coding	chr14:20509449-20516016
chr14	20605176	20605444	+	B4A	SINE	B4	chr14	20605329	20605331	-	ENSMUST00000143267.7,ENSMUSG00000034235.17	Usp54	ENSMUSG00000034235.17	ENSMUST00000143267.7	protein_coding	chr14:20581169-20605330
chr14	20690548	20690655	+	GA-rich	Low_complexity	Low_complexity	chr14	20690634	20690636	+	ENSMUST00000183515.1,ENSMUSG00000098602.1	Mir6946	ENSMUSG00000098602.1	ENSMUST00000183515.1	miRNA	chr14:20690635-20690703
chr14	20701522	20701629	+	U6	snRNA	snRNA	chr14	20701522	20701524	+	ENSMUST00000175013.1,ENSMUSG00000095087.1	Gm25328	ENSMUSG00000095087.1	ENSMUST00000175013.1	snRNA	chr14:20701523-20701629
chr14	21076145	21076170	+	GC_rich	Low_complexity	Low_complexity	chr14	21076151	21076153	+	ENSMUST00000224069.1,ENSMUSG00000039197.10	Adk	ENSMUSG00000039197.10	ENSMUST00000224069.1	protein_coding	chr14:21076152-21448562
chr14	21473260	21473424	+	B3A	SINE	B2	chr14	21473359	21473361	-	ENSMUST00000225719.1,ENSMUSG00000114875.1	Gm30363	ENSMUSG00000114875.1	ENSMUST00000225719.1	processed_transcript	chr14:21468858-21473360
chr14	21481338	21481641	+	ORR1B2	LTR	ERVL-MaLR	chr14	21481433	21481435	+	ENSMUST00000182996.1,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000182996.1	protein_coding	chr14:21481434-21517111
chr14	21481338	21481641	+	ORR1B2	LTR	ERVL-MaLR	chr14	21481458	21481460	+	ENSMUST00000183201.7,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000183201.7	protein_coding	chr14:21481459-21621977
chr14	21499782	21499813	+	(GGA)n	Simple_repeat	Simple_repeat	chr14	21499784	21499786	+	ENSMUST00000182405.8,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000182405.8	protein_coding	chr14:21499785-21672133
chr14	21499782	21499813	+	(GGA)n	Simple_repeat	Simple_repeat	chr14	21499784	21499786	+	ENSMUST00000069648.13,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000069648.13	protein_coding	chr14:21499785-21672478
chr14	21500832	21500853	+	GC_rich	Low_complexity	Low_complexity	chr14	21500852	21500854	+	ENSMUST00000096222.11,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000096222.11	protein_coding	chr14:21500853-21621401
chr14	21500832	21500853	+	GC_rich	Low_complexity	Low_complexity	chr14	21500852	21500854	+	ENSMUST00000182964.2,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000182964.2	protein_coding	chr14:21500853-21672478
chr14	21622534	21622559	+	(T)n	Simple_repeat	Simple_repeat	chr14	21622541	21622543	+	ENSMUST00000182732.1,ENSMUSG00000021767.18	Kat6b	ENSMUSG00000021767.18	ENSMUST00000182732.1	protein_coding	chr14:21622542-21634589
chr14	21791846	21791983	-	B1_Mur3	SINE	Alu	chr14	21791871	21791873	+	ENSMUST00000142023.1,ENSMUSG00000021770.11	Samd8	ENSMUSG00000021770.11	ENSMUST00000142023.1	protein_coding	chr14:21791872-21792975
chr14	21825036	21825373	+	MTC	LTR	ERVL-MaLR	chr14	21825237	21825239	+	ENSMUST00000224373.1,ENSMUSG00000021771.14	Vdac2	ENSMUSG00000021771.14	ENSMUST00000224373.1	protein_coding	chr14:21825238-21840569
chr14	21848429	21848489	-	MIRc	SINE	MIR	chr14	21848446	21848448	+	ENSMUST00000169054.2,ENSMUSG00000090564.9	A430057M04Rik	ENSMUSG00000090564.9	ENSMUST00000169054.2	antisense	chr14:21848447-21856931
chr14	22036103	22036148	+	(TG)n	Simple_repeat	Simple_repeat	chr14	22036102	22036104	-	ENSMUST00000225573.1,ENSMUSG00000114205.1	Gm7480	ENSMUSG00000114205.1	ENSMUST00000225573.1	antisense	chr14:22032086-22036103
chr14	23731521	23732661	-	MTB_Mm-int	LTR	ERVL-MaLR	chr14	23732123	23732125	-	ENSMUST00000224465.1,ENSMUSG00000063142.15	Kcnma1	ENSMUSG00000063142.15	ENSMUST00000224465.1	protein_coding	chr14:23591588-23732124
chr14	23732720	23733244	+	MT2B2	LTR	ERVL	chr14	23733023	23733025	-	ENSMUST00000224933.1,ENSMUSG00000063142.15	Kcnma1	ENSMUSG00000063142.15	ENSMUST00000224933.1	protein_coding	chr14:23470161-23733024
chr14	23732720	23733244	+	MT2B2	LTR	ERVL	chr14	23733023	23733025	-	ENSMUST00000225305.1,ENSMUSG00000063142.15	Kcnma1	ENSMUSG00000063142.15	ENSMUST00000225305.1	protein_coding	chr14:23528441-23733024
chr14	24003946	24004008	+	(GGA)n	Simple_repeat	Simple_repeat	chr14	24003976	24003978	-	ENSMUST00000224025.1,ENSMUSG00000063142.15	Kcnma1	ENSMUSG00000063142.15	ENSMUST00000224025.1	protein_coding	chr14:23299891-24003977
chr14	24075734	24076298	+	RLTR6B_Mm	LTR	ERV1	chr14	24075907	24075909	-	ENSMUST00000224007.1,ENSMUSG00000114722.1	Gm31392	ENSMUSG00000114722.1	ENSMUST00000224007.1	lincRNA	chr14:24044343-24075908
chr14	24376981	24377338	-	Lx5	LINE	L1	chr14	24377251	24377253	-	ENSMUST00000224191.1,ENSMUSG00000114567.1	Gm47774	ENSMUSG00000114567.1	ENSMUST00000224191.1	lincRNA	chr14:24375653-24377252
chr14	24617146	24617309	-	MIR3	SINE	MIR	chr14	24617303	24617305	-	ENSMUST00000062438.4,ENSMUSG00000048628.5	4930542C16Rik	ENSMUSG00000048628.5	ENSMUST00000062438.4	lincRNA	chr14:24615118-24617304
chr14	25143018	25143293	+	L1M4	LINE	L1	chr14	25143240	25143242	-	ENSMUST00000225429.1,ENSMUSG00000114916.1	4930572O13Rik	ENSMUSG00000114916.1	ENSMUST00000225429.1	lincRNA	chr14:25139795-25143241
chr14	25554201	25554369	+	B2_Mm2	SINE	B2	chr14	25554368	25554370	-	ENSMUST00000180466.1,ENSMUSG00000097136.1	Gm26772	ENSMUSG00000097136.1	ENSMUST00000180466.1	lincRNA	chr14:25548390-25554369
chr14	25554369	25554454	+	(GAAA)n	Simple_repeat	Simple_repeat	chr14	25554368	25554370	-	ENSMUST00000180466.1,ENSMUSG00000097136.1	Gm26772	ENSMUSG00000097136.1	ENSMUST00000180466.1	lincRNA	chr14:25548390-25554369
chr14	25809863	25809999	+	B1_Mus1	SINE	Alu	chr14	25809880	25809882	-	ENSMUST00000184296.1,ENSMUSG00000099057.1	Gm27185	ENSMUSG00000099057.1	ENSMUST00000184296.1	processed_pseudogene	chr14:25809635-25809881
chr14	25827791	25828307	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr14	25828104	25828106	-	ENSMUST00000103893.1,ENSMUSG00000077081.1	Gm23701	ENSMUSG00000077081.1	ENSMUST00000103893.1	miRNA	chr14:25827996-25828105
chr14	25954558	25954826	-	RLTR51B_Mm	LTR	ERVK?	chr14	25954667	25954669	+	ENSMUST00000183557.1,ENSMUSG00000095975.3	Cphx1	ENSMUSG00000095975.3	ENSMUST00000183557.1	protein_coding	chr14:25954668-25955147
chr14	25980242	25980592	+	MTE2b	LTR	ERVL-MaLR	chr14	25980372	25980374	+	ENSMUST00000174383.1,ENSMUSG00000048502.14	Duxbl1	ENSMUSG00000048502.14	ENSMUST00000174383.1	protein_coding	chr14:25980373-25987555
chr14	25982895	25983051	-	MTEa	LTR	ERVL-MaLR	chr14	25983004	25983006	+	ENSMUST00000049793.8,ENSMUSG00000048502.14	Duxbl1	ENSMUSG00000048502.14	ENSMUST00000049793.8	protein_coding	chr14:25983005-25990088
chr14	26120014	26120364	+	MTE2b	LTR	ERVL-MaLR	chr14	26120144	26120146	+	ENSMUST00000172861.1,ENSMUSG00000072675.12	Duxbl2	ENSMUSG00000072675.12	ENSMUST00000172861.1	protein_coding	chr14:26120145-26127133
chr14	26122499	26122655	-	MTEa	LTR	ERVL-MaLR	chr14	26122608	26122610	+	ENSMUST00000100810.6,ENSMUSG00000072675.12	Duxbl2	ENSMUSG00000072675.12	ENSMUST00000100810.6	protein_coding	chr14:26122609-26129763
chr14	26259627	26259977	+	MTE2b	LTR	ERVL-MaLR	chr14	26259757	26259759	+	ENSMUST00000173017.1,ENSMUSG00000072672.10	Duxbl3	ENSMUSG00000072672.10	ENSMUST00000173017.1	protein_coding	chr14:26259758-26266784
chr14	26262148	26262304	-	MTEa	LTR	ERVL-MaLR	chr14	26262257	26262259	+	ENSMUST00000100804.4,ENSMUSG00000072672.10	Duxbl3	ENSMUSG00000072672.10	ENSMUST00000100804.4	protein_coding	chr14:26262258-26269436
chr14	26573664	26574310	+	RMER19B	LTR	ERVK	chr14	26573855	26573857	+	ENSMUST00000224248.1,ENSMUSG00000040818.10	Dennd6a	ENSMUSG00000040818.10	ENSMUST00000224248.1	protein_coding	chr14:26573856-26630583
chr14	26573664	26574310	+	RMER19B	LTR	ERVK	chr14	26573857	26573859	+	ENSMUST00000224378.1,ENSMUSG00000040818.10	Dennd6a	ENSMUSG00000040818.10	ENSMUST00000224378.1	protein_coding	chr14:26573858-26630446
chr14	26573664	26574310	+	RMER19B	LTR	ERVK	chr14	26573858	26573860	+	ENSMUST00000224111.1,ENSMUSG00000040818.10	Dennd6a	ENSMUSG00000040818.10	ENSMUST00000224111.1	protein_coding	chr14:26573859-26630288
chr14	26693124	26693287	-	MIR3	SINE	MIR	chr14	26693273	26693275	+	ENSMUST00000022433.11,ENSMUSG00000021879.13	Dnah12	ENSMUSG00000021879.13	ENSMUST00000022433.11	protein_coding	chr14:26693274-26891703
chr14	27380805	27380988	+	L1ME4b	LINE	L1	chr14	27380849	27380851	-	ENSMUST00000175293.1,ENSMUSG00000093034.1	Gm23633	ENSMUSG00000093034.1	ENSMUST00000175293.1	miRNA	chr14:27380732-27380850
chr14	27489269	27489377	+	U6	snRNA	snRNA	chr14	27489268	27489270	+	ENSMUST00000157990.1,ENSMUSG00000088615.1	Gm22485	ENSMUSG00000088615.1	ENSMUST00000157990.1	snRNA	chr14:27489269-27489377
chr14	27552142	27552283	-	L1_Mur3	LINE	L1	chr14	27552157	27552159	-	ENSMUST00000225617.1,ENSMUSG00000114482.1	Gm7604	ENSMUSG00000114482.1	ENSMUST00000225617.1	processed_pseudogene	chr14:27551191-27552158
chr14	27622408	27622509	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	27622427	27622429	+	ENSMUST00000210135.1,ENSMUSG00000040640.11	Erc2	ENSMUSG00000040640.11	ENSMUST00000210135.1	protein_coding	chr14:27622428-28478535
chr14	27622408	27622509	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	27622441	27622443	+	ENSMUST00000090302.5,ENSMUSG00000040640.11	Erc2	ENSMUSG00000040640.11	ENSMUST00000090302.5	protein_coding	chr14:27622442-28478537
chr14	27622408	27622509	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	27622495	27622497	+	ENSMUST00000211087.1,ENSMUSG00000040640.11	Erc2	ENSMUSG00000040640.11	ENSMUST00000211087.1	protein_coding	chr14:27622496-27777211
chr14	29097873	29097903	+	(A)n	Simple_repeat	Simple_repeat	chr14	29097902	29097904	-	ENSMUST00000224950.1,ENSMUSG00000021991.9	Cacna2d3	ENSMUSG00000021991.9	ENSMUST00000224950.1	protein_coding	chr14:29072656-29097903
chr14	29360719	29361041	+	ORR1F	LTR	ERVL-MaLR	chr14	29360833	29360835	-	ENSMUST00000225733.1,ENSMUSG00000021991.9	Cacna2d3	ENSMUSG00000021991.9	ENSMUST00000225733.1	protein_coding	chr14:29064154-29360834
chr14	29360719	29361041	+	ORR1F	LTR	ERVL-MaLR	chr14	29360833	29360835	-	ENSMUST00000225863.1,ENSMUSG00000021991.9	Cacna2d3	ENSMUSG00000021991.9	ENSMUST00000225863.1	protein_coding	chr14:29064196-29360834
chr14	29360719	29361041	+	ORR1F	LTR	ERVL-MaLR	chr14	29360822	29360824	-	ENSMUST00000225953.1,ENSMUSG00000021991.9	Cacna2d3	ENSMUSG00000021991.9	ENSMUST00000225953.1	protein_coding	chr14:29292974-29360823
chr14	29574556	29574948	+	ORR1F	LTR	ERVL-MaLR	chr14	29574696	29574698	+	ENSMUST00000225295.1,ENSMUSG00000114704.1	Gm48003	ENSMUSG00000114704.1	ENSMUST00000225295.1	antisense	chr14:29574697-29576858
chr14	29574556	29574948	+	ORR1F	LTR	ERVL-MaLR	chr14	29574696	29574698	+	ENSMUST00000224352.1,ENSMUSG00000114704.1	Gm48003	ENSMUSG00000114704.1	ENSMUST00000224352.1	antisense	chr14:29574697-29593304
chr14	29721770	29721808	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	29721794	29721796	-	ENSMUST00000224128.1,ENSMUSG00000021991.9	Cacna2d3	ENSMUSG00000021991.9	ENSMUST00000224128.1	protein_coding	chr14:29717467-29721795
chr14	29733182	29733518	-	ORR1A0	LTR	ERVL-MaLR	chr14	29733394	29733396	-	ENSMUST00000225976.1,ENSMUSG00000114570.1	Gm48058	ENSMUSG00000114570.1	ENSMUST00000225976.1	lincRNA	chr14:29732366-29733395
chr14	29903147	29903987	-	RMER17B	LTR	ERVK	chr14	29903767	29903769	+	ENSMUST00000223966.1,ENSMUSG00000114606.1	Gm7633	ENSMUSG00000114606.1	ENSMUST00000223966.1	transcribed_processed_pseudogene	chr14:29903768-29907588
chr14	29959972	29961732	-	ORR1A1-int	LTR	ERVL-MaLR	chr14	29961380	29961382	-	ENSMUST00000223774.1,ENSMUSG00000114424.1	Gm47414	ENSMUSG00000114424.1	ENSMUST00000223774.1	lincRNA	chr14:29958071-29961381
chr14	29982112	29982511	+	MTC	LTR	ERVL-MaLR	chr14	29982203	29982205	+	ENSMUST00000225811.1,ENSMUSG00000015971.5	Actr8	ENSMUSG00000015971.5	ENSMUST00000225811.1	protein_coding	chr14:29982204-29986317
chr14	29998330	29998490	-	RSINE1	SINE	B4	chr14	29998458	29998460	-	ENSMUST00000225746.1,ENSMUSG00000015966.17	Il17rb	ENSMUSG00000015966.17	ENSMUST00000225746.1	protein_coding	chr14:29996920-29998459
chr14	30352969	30352992	+	(CAT)n	Simple_repeat	Simple_repeat	chr14	30352990	30352992	-	ENSMUST00000224785.1,ENSMUSG00000015968.17	Cacna1d	ENSMUSG00000015968.17	ENSMUST00000224785.1	protein_coding	chr14:30040440-30352991
chr14	30352969	30352992	+	(CAT)n	Simple_repeat	Simple_repeat	chr14	30352990	30352992	-	ENSMUST00000112249.8,ENSMUSG00000015968.17	Cacna1d	ENSMUSG00000015968.17	ENSMUST00000112249.8	protein_coding	chr14:30040440-30352991
chr14	30352969	30352992	+	(CAT)n	Simple_repeat	Simple_repeat	chr14	30352990	30352992	-	ENSMUST00000223803.1,ENSMUSG00000015968.17	Cacna1d	ENSMUSG00000015968.17	ENSMUST00000223803.1	protein_coding	chr14:30042073-30352991
chr14	30352993	30353048	-	L2b	LINE	L2	chr14	30353008	30353010	-	ENSMUST00000224198.1,ENSMUSG00000015968.17	Cacna1d	ENSMUSG00000015968.17	ENSMUST00000224198.1	protein_coding	chr14:30042067-30353009
chr14	30513242	30513489	+	L2	LINE	L2	chr14	30513264	30513266	+	ENSMUST00000223754.1,ENSMUSG00000021962.9	Dcp1a	ENSMUSG00000021962.9	ENSMUST00000223754.1	protein_coding	chr14:30513265-30523736
chr14	30513242	30513489	+	L2	LINE	L2	chr14	30513271	30513273	+	ENSMUST00000225655.1,ENSMUSG00000021962.9	Dcp1a	ENSMUSG00000021962.9	ENSMUST00000225655.1	protein_coding	chr14:30513272-30523523
chr14	30513242	30513489	+	L2	LINE	L2	chr14	30513286	30513288	+	ENSMUST00000223568.1,ENSMUSG00000021962.9	Dcp1a	ENSMUSG00000021962.9	ENSMUST00000223568.1	protein_coding	chr14:30513287-30523519
chr14	30569604	30569751	-	B1_Mm	SINE	Alu	chr14	30569704	30569706	+	ENSMUST00000160406.1,ENSMUSG00000021957.7	Tkt	ENSMUSG00000021957.7	ENSMUST00000160406.1	protein_coding	chr14:30569705-30571020
chr14	30899050	30899217	+	(GAA)n	Simple_repeat	Simple_repeat	chr14	30899160	30899162	+	ENSMUST00000227899.1,ENSMUSG00000021922.17	Itih4	ENSMUSG00000021922.17	ENSMUST00000227899.1	protein_coding	chr14:30899161-30901849
chr14	31010326	31010376	-	L3	LINE	CR1	chr14	31010331	31010333	+	ENSMUST00000227783.1,ENSMUSG00000021916.16	Glt8d1	ENSMUSG00000021916.16	ENSMUST00000227783.1	protein_coding	chr14:31010332-31011991
chr14	31011251	31011372	+	B1F	SINE	Alu	chr14	31011307	31011309	+	ENSMUST00000226959.1,ENSMUSG00000021916.16	Glt8d1	ENSMUSG00000021916.16	ENSMUST00000226959.1	protein_coding	chr14:31011308-31011991
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019151	31019153	-	ENSMUST00000037739.7,ENSMUSG00000042354.7	Gnl3	ENSMUSG00000042354.7	ENSMUST00000037739.7	protein_coding	chr14:31012433-31019152
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019148	31019150	+	ENSMUST00000112106.7,ENSMUSG00000042323.17	Pbrm1	ENSMUSG00000042323.17	ENSMUST00000112106.7	protein_coding	chr14:31019149-31027530
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019156	31019158	+	ENSMUST00000146325.7,ENSMUSG00000042323.17	Pbrm1	ENSMUSG00000042323.17	ENSMUST00000146325.7	protein_coding	chr14:31019157-31082598
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019169	31019171	+	ENSMUST00000112094.7,ENSMUSG00000042323.17	Pbrm1	ENSMUSG00000042323.17	ENSMUST00000112094.7	protein_coding	chr14:31019170-31118967
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019176	31019178	+	ENSMUST00000144009.1,ENSMUSG00000042323.17	Pbrm1	ENSMUSG00000042323.17	ENSMUST00000144009.1	protein_coding	chr14:31019177-31027498
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019198	31019200	+	ENSMUST00000145497.1,ENSMUSG00000042323.17	Pbrm1	ENSMUSG00000042323.17	ENSMUST00000145497.1	protein_coding	chr14:31019199-31032063
chr14	31019144	31019292	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	31019207	31019209	+	ENSMUST00000052239.11,ENSMUSG00000042323.17	Pbrm1	ENSMUSG00000042323.17	ENSMUST00000052239.11	protein_coding	chr14:31019208-31119119
chr14	31206728	31206821	+	C-rich	Low_complexity	Low_complexity	chr14	31206800	31206802	-	ENSMUST00000022469.12,ENSMUSG00000021910.15	Nisch	ENSMUSG00000021910.15	ENSMUST00000022469.12	protein_coding	chr14:31170930-31206801
chr14	31506205	31506375	-	B3	SINE	B2	chr14	31506228	31506230	+	ENSMUST00000227551.1,ENSMUSG00000021890.6	Eaf1	ENSMUSG00000021890.6	ENSMUST00000227551.1	protein_coding	chr14:31506229-31507152
chr14	31537048	31537258	-	7SK	RNA	RNA	chr14	31537257	31537259	-	ENSMUST00000158616.1,ENSMUSG00000089241.1	Gm24057	ENSMUSG00000089241.1	ENSMUST00000158616.1	misc_RNA	chr14:31536957-31537258
chr14	31577309	31577458	+	IMPB_01	Satellite	Satellite	chr14	31577382	31577384	-	ENSMUST00000112027.8,ENSMUSG00000057606.14	Colq	ENSMUSG00000057606.14	ENSMUST00000112027.8	protein_coding	chr14:31523082-31577383
chr14	31742643	31742974	-	L1ME2z	LINE	L1	chr14	31742828	31742830	-	ENSMUST00000227307.1,ENSMUSG00000014496.8	Ankrd28	ENSMUSG00000014496.8	ENSMUST00000227307.1	protein_coding	chr14:31721914-31742829
chr14	31742643	31742974	-	L1ME2z	LINE	L1	chr14	31742833	31742835	-	ENSMUST00000227083.1,ENSMUSG00000014496.8	Ankrd28	ENSMUSG00000014496.8	ENSMUST00000227083.1	protein_coding	chr14:31721928-31742834
chr14	31754138	31754482	-	MTD	LTR	ERVL-MaLR	chr14	31754413	31754415	-	ENSMUST00000227034.1,ENSMUSG00000115210.1	Gm49308	ENSMUSG00000115210.1	ENSMUST00000227034.1	TEC	chr14:31750803-31754414
chr14	31830624	31830665	+	GC_rich	Low_complexity	Low_complexity	chr14	31830650	31830652	-	ENSMUST00000014640.8,ENSMUSG00000014496.8	Ankrd28	ENSMUSG00000014496.8	ENSMUST00000014640.8	protein_coding	chr14:31698768-31830651
chr14	31837117	31837190	-	B4A	SINE	B4	chr14	31837180	31837182	-	ENSMUST00000175450.2,ENSMUSG00000093191.2	Gm22876	ENSMUSG00000093191.2	ENSMUST00000175450.2	misc_RNA	chr14:31836884-31837181
chr14	32023338	32023440	+	7SK	RNA	RNA	chr14	32023343	32023345	+	ENSMUST00000157862.1,ENSMUSG00000088487.1	Gm26045	ENSMUSG00000088487.1	ENSMUST00000157862.1	misc_RNA	chr14:32023344-32023440
chr14	32100815	32100934	-	B1_Mur1	SINE	Alu	chr14	32100817	32100819	+	ENSMUST00000164396.1,ENSMUSG00000021906.14	Oxnad1	ENSMUSG00000021906.14	ENSMUST00000164396.1	protein_coding	chr14:32100818-32102282
chr14	32147294	32147692	+	ERVB5_1-LTR_MM	LTR	ERVK	chr14	32147586	32147588	+	ENSMUST00000130397.1,ENSMUSG00000021907.13	Msmb	ENSMUSG00000021907.13	ENSMUST00000130397.1	protein_coding	chr14:32147587-32158370
chr14	32317806	32318136	-	ORR1B1	LTR	ERVL-MaLR	chr14	32317984	32317986	-	ENSMUST00000226980.1,ENSMUSG00000115691.1	Gm48914	ENSMUSG00000115691.1	ENSMUST00000226980.1	lincRNA	chr14:32303662-32317985
chr14	32460933	32461063	+	C-rich	Low_complexity	Low_complexity	chr14	32460939	32460941	-	ENSMUST00000227579.1,ENSMUSG00000021919.8	Chat	ENSMUSG00000021919.8	ENSMUST00000227579.1	protein_coding	chr14:32446919-32460940
chr14	32548072	32548285	-	B3A	SINE	B2	chr14	32548150	32548152	+	ENSMUST00000228035.1,ENSMUSG00000054051.7	Ercc6	ENSMUSG00000054051.7	ENSMUST00000228035.1	protein_coding	chr14:32548151-32558538
chr14	32686480	32686606	+	MIRb	SINE	MIR	chr14	32686557	32686559	+	ENSMUST00000227968.1,ENSMUSG00000101086.2	Gm28651	ENSMUSG00000101086.2	ENSMUST00000227968.1	lincRNA	chr14:32686558-32689250
chr14	32897671	32897841	+	Tigger7	DNA	TcMar-Tigger	chr14	32897718	32897720	+	ENSMUST00000182832.1,ENSMUSG00000098236.1	Gm7734	ENSMUSG00000098236.1	ENSMUST00000182832.1	processed_pseudogene	chr14:32897719-32898729
chr14	33202772	33202865	+	RMER1B	Other	Other	chr14	33202857	33202859	+	ENSMUST00000228565.1,ENSMUSG00000115104.1	Gm49029	ENSMUSG00000115104.1	ENSMUST00000228565.1	processed_pseudogene	chr14:33202858-33203263
chr14	33220743	33221236	-	MT2_Mm	LTR	ERVL	chr14	33220930	33220932	-	ENSMUST00000226933.1,ENSMUSG00000115597.1	Gm49030	ENSMUSG00000115597.1	ENSMUST00000226933.1	antisense	chr14:33218044-33220931
chr14	33351303	33351335	+	GC_rich	Low_complexity	Low_complexity	chr14	33351311	33351313	+	ENSMUST00000140711.2,ENSMUSG00000063506.14	Arhgap22	ENSMUSG00000063506.14	ENSMUST00000140711.2	protein_coding	chr14:33351312-33363280
chr14	33644494	33644600	+	U6	snRNA	snRNA	chr14	33644494	33644496	+	ENSMUST00000082512.1,ENSMUSG00000064446.1	Gm26228	ENSMUSG00000064446.1	ENSMUST00000082512.1	snRNA	chr14:33644495-33644601
chr14	33811260	33811348	+	RMER17C2	LTR	ERVK	chr14	33811282	33811284	-	ENSMUST00000228030.1,ENSMUSG00000115751.1	4930503F20Rik	ENSMUSG00000115751.1	ENSMUST00000228030.1	lincRNA	chr14:33808075-33811283
chr14	33811260	33811348	+	RMER17C2	LTR	ERVK	chr14	33811282	33811284	-	ENSMUST00000226156.1,ENSMUSG00000115751.1	4930503F20Rik	ENSMUSG00000115751.1	ENSMUST00000226156.1	lincRNA	chr14:33809759-33811283
chr14	34052594	34053048	+	MLT1G	LTR	ERVL-MaLR	chr14	34052706	34052708	+	ENSMUST00000226211.1,ENSMUSG00000047441.4	Antxrl	ENSMUSG00000047441.4	ENSMUST00000226211.1	protein_coding	chr14:34052707-34056609
chr14	34105954	34106162	+	L1M5	LINE	L1	chr14	34106155	34106157	+	ENSMUST00000157908.1,ENSMUSG00000088533.1	Gm24998	ENSMUSG00000088533.1	ENSMUST00000157908.1	snoRNA	chr14:34106156-34106244
chr14	34201650	34201759	+	C-rich	Low_complexity	Low_complexity	chr14	34201652	34201654	-	ENSMUST00000226511.1,ENSMUSG00000071531.3	Gprin2	ENSMUSG00000071531.3	ENSMUST00000226511.1	protein_coding	chr14:34195416-34201653
chr14	34287265	34287647	+	MTC	LTR	ERVL-MaLR	chr14	34287358	34287360	-	ENSMUST00000228626.1,ENSMUSG00000041471.9	Shld2	ENSMUSG00000041471.9	ENSMUST00000228626.1	protein_coding	chr14:34266121-34287359
chr14	34668248	34668580	-	MLT1H	LTR	ERVL-MaLR	chr14	34668338	34668340	-	ENSMUST00000227707.1,ENSMUSG00000115451.1	Gm49025	ENSMUSG00000115451.1	ENSMUST00000227707.1	lincRNA	chr14:34668031-34668339
chr14	34694110	34694652	+	RLTR12E	LTR	ERVK	chr14	34694336	34694338	+	ENSMUST00000111895.7,ENSMUSG00000041408.18	Wapl	ENSMUSG00000041408.18	ENSMUST00000111895.7	protein_coding	chr14:34694337-34746217
chr14	34702228	34709520	-	L1Md_T	LINE	L1	chr14	34709079	34709081	+	ENSMUST00000172658.1,ENSMUSG00000041408.18	Wapl	ENSMUSG00000041408.18	ENSMUST00000172658.1	protein_coding	chr14:34709080-34724829
chr14	34769955	34770088	+	RSINE1	SINE	B4	chr14	34770054	34770056	-	ENSMUST00000228194.1,ENSMUSG00000115109.1	Gm49032	ENSMUSG00000115109.1	ENSMUST00000228194.1	lincRNA	chr14:34768956-34770055
chr14	35569928	35570126	-	LFSINE_Vert	SINE	tRNA	chr14	35569993	35569995	+	ENSMUST00000173307.1,ENSMUSG00000041078.7	Grid1	ENSMUSG00000041078.7	ENSMUST00000173307.1	protein_coding	chr14:35569994-35581114
chr14	35569928	35570126	-	LFSINE_Vert	SINE	tRNA	chr14	35569952	35569954	+	ENSMUST00000184321.1,ENSMUSG00000098696.1	Gm27617	ENSMUSG00000098696.1	ENSMUST00000184321.1	misc_RNA	chr14:35569953-35570120
chr14	36227053	36232920	-	L1_Mus2	LINE	L1	chr14	36232040	36232042	-	ENSMUST00000224615.1,ENSMUSG00000114494.1	Gm48663	ENSMUSG00000114494.1	ENSMUST00000224615.1	processed_pseudogene	chr14:36231441-36232041
chr14	36767424	36767530	+	U6	snRNA	snRNA	chr14	36767424	36767426	+	ENSMUST00000082843.1,ENSMUSG00000064777.1	Gm25204	ENSMUSG00000064777.1	ENSMUST00000082843.1	snRNA	chr14:36767425-36767530
chr14	36855954	36856044	-	5S	rRNA	rRNA	chr14	36856043	36856045	-	ENSMUST00000083960.1,ENSMUSG00000065894.1	n-R5s46	ENSMUSG00000065894.1	ENSMUST00000083960.1	rRNA	chr14:36855929-36856044
chr14	37467894	37467970	+	(CA)n	Simple_repeat	Simple_repeat	chr14	37467897	37467899	-	ENSMUST00000223601.1,ENSMUSG00000114741.1	Gm47971	ENSMUSG00000114741.1	ENSMUST00000223601.1	TEC	chr14:37465822-37467898
chr14	38046346	38052051	+	L1Md_F2	LINE	L1	chr14	38047982	38047984	+	ENSMUST00000225855.1,ENSMUSG00000114339.1	Gm47974	ENSMUSG00000114339.1	ENSMUST00000225855.1	processed_pseudogene	chr14:38047983-38051136
chr14	38317133	38318024	-	RMER17B	LTR	ERVK	chr14	38317903	38317905	+	ENSMUST00000225614.1,ENSMUSG00000114219.1	Gm31456	ENSMUSG00000114219.1	ENSMUST00000225614.1	lincRNA	chr14:38317904-38337126
chr14	38522008	38522363	+	Lx5c	LINE	L1	chr14	38522048	38522050	+	ENSMUST00000176069.1,ENSMUSG00000093556.1	Gm20641	ENSMUSG00000093556.1	ENSMUST00000176069.1	antisense	chr14:38522049-38532311
chr14	38899770	38899951	+	(TA)n	Simple_repeat	Simple_repeat	chr14	38899943	38899945	-	ENSMUST00000184893.1,ENSMUSG00000098723.1	Gm27332	ENSMUSG00000098723.1	ENSMUST00000184893.1	miRNA	chr14:38899833-38899944
chr14	39219523	39220759	+	MTB_Mm-int	LTR	ERVL-MaLR	chr14	39220070	39220072	+	ENSMUST00000177185.1,ENSMUSG00000093383.1	Gm20642	ENSMUSG00000093383.1	ENSMUST00000177185.1	antisense	chr14:39220071-39250430
chr14	39472649	39472697	+	L1MDb	LINE	L1	chr14	39472665	39472667	-	ENSMUST00000176122.1,ENSMUSG00000041014.17	Nrg3	ENSMUSG00000041014.17	ENSMUST00000176122.1	protein_coding	chr14:39009187-39472666
chr14	39472725	39472994	+	L1MDb	LINE	L1	chr14	39472824	39472826	-	ENSMUST00000168810.8,ENSMUSG00000041014.17	Nrg3	ENSMUSG00000041014.17	ENSMUST00000168810.8	protein_coding	chr14:38370477-39472825
chr14	39472725	39472994	+	L1MDb	LINE	L1	chr14	39472826	39472828	-	ENSMUST00000173780.1,ENSMUSG00000041014.17	Nrg3	ENSMUSG00000041014.17	ENSMUST00000173780.1	protein_coding	chr14:38370493-39472827
chr14	40214931	40215452	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr14	40215240	40215242	-	ENSMUST00000103831.1,ENSMUSG00000077019.1	Gm22191	ENSMUSG00000077019.1	ENSMUST00000103831.1	miRNA	chr14:40215132-40215241
chr14	40318125	40318287	-	7SK	RNA	RNA	chr14	40318249	40318251	-	ENSMUST00000158089.1,ENSMUSG00000088714.1	Gm22726	ENSMUSG00000088714.1	ENSMUST00000158089.1	misc_RNA	chr14:40318072-40318250
chr14	40421514	40421621	+	U6	snRNA	snRNA	chr14	40421514	40421516	+	ENSMUST00000177872.1,ENSMUSG00000095140.1	Gm24388	ENSMUSG00000095140.1	ENSMUST00000177872.1	snRNA	chr14:40421515-40421621
chr14	40747101	40748183	+	L1VL1	LINE	L1	chr14	40747226	40747228	+	ENSMUST00000225171.1,ENSMUSG00000114933.1	Gm48040	ENSMUSG00000114933.1	ENSMUST00000225171.1	processed_pseudogene	chr14:40747227-40748499
chr14	41006895	41006927	+	(TAAA)n	Simple_repeat	Simple_repeat	chr14	41006919	41006921	-	ENSMUST00000152837.1,ENSMUSG00000021792.15	Fam213a	ENSMUSG00000021792.15	ENSMUST00000152837.1	protein_coding	chr14:41004041-41006920
chr14	41053401	41053727	+	IAPEY4_LTR	LTR	ERVK	chr14	41053652	41053654	+	ENSMUST00000224095.1,ENSMUSG00000114196.1	Gm47547	ENSMUSG00000114196.1	ENSMUST00000224095.1	antisense	chr14:41053653-41061614
chr14	41247685	41247792	+	U6	snRNA	snRNA	chr14	41247685	41247687	+	ENSMUST00000179754.1,ENSMUSG00000094710.1	Gm22823	ENSMUSG00000094710.1	ENSMUST00000179754.1	snRNA	chr14:41247686-41247792
chr14	42274305	42274791	-	MT2_Mm	LTR	ERVL	chr14	42274538	42274540	-	ENSMUST00000178964.1,ENSMUSG00000096309.1	Gm25208	ENSMUSG00000096309.1	ENSMUST00000178964.1	miRNA	chr14:42274419-42274539
chr14	42280228	42280715	-	MT2_Mm	LTR	ERVL	chr14	42280461	42280463	-	ENSMUST00000179867.1,ENSMUSG00000096510.1	Gm25892	ENSMUSG00000096510.1	ENSMUST00000179867.1	miRNA	chr14:42280342-42280462
chr14	42614112	42614599	-	MT2_Mm	LTR	ERVL	chr14	42614345	42614347	-	ENSMUST00000180121.1,ENSMUSG00000094563.1	Gm25228	ENSMUSG00000094563.1	ENSMUST00000180121.1	miRNA	chr14:42614226-42614346
chr14	42624803	42625290	-	MT2_Mm	LTR	ERVL	chr14	42625036	42625038	-	ENSMUST00000116812.1,ENSMUSG00000093807.1	Gm23620	ENSMUSG00000093807.1	ENSMUST00000116812.1	miRNA	chr14:42624917-42625037
chr14	43122403	43124307	-	RLTR1B-int	LTR	ERV1	chr14	43122470	43122472	-	ENSMUST00000169632.2,ENSMUSG00000090389.2	Cdv3-ps	ENSMUSG00000090389.2	ENSMUST00000169632.2	processed_pseudogene	chr14:43120937-43122471
chr14	43254746	43255550	+	L1_Mur1	LINE	L1	chr14	43255370	43255372	+	ENSMUST00000225166.1,ENSMUSG00000114544.1	Gm49146	ENSMUSG00000114544.1	ENSMUST00000225166.1	transcribed_unprocessed_pseudogene	chr14:43255371-43257957
chr14	43298626	43298881	+	Lx8b	LINE	L1	chr14	43298871	43298873	+	ENSMUST00000228117.1,ENSMUSG00000115483.1	Gm9732	ENSMUSG00000115483.1	ENSMUST00000228117.1	protein_coding	chr14:43298872-43306004
chr14	43646079	43646481	+	BGLII	LTR	ERVK	chr14	43646250	43646252	+	ENSMUST00000228384.1,ENSMUSG00000115050.1	Gm21154	ENSMUSG00000115050.1	ENSMUST00000228384.1	lincRNA	chr14:43646251-43673065
chr14	43761938	43762355	+	BGLII	LTR	ERVK	chr14	43762151	43762153	+	ENSMUST00000228724.1,ENSMUSG00000115272.1	AC154806.1	ENSMUSG00000115272.1	ENSMUST00000228724.1	lincRNA	chr14:43762152-43766637
chr14	43812362	43812688	-	IAPEY4_LTR	LTR	ERVK	chr14	43812382	43812384	-	ENSMUST00000227212.1,ENSMUSG00000115354.1	Gm49083	ENSMUSG00000115354.1	ENSMUST00000227212.1	lincRNA	chr14:43804696-43812383
chr14	43925158	43925485	+	IAPEY4_LTR	LTR	ERVK	chr14	43925389	43925391	+	ENSMUST00000160298.1,ENSMUSG00000089901.1	Gm8113	ENSMUSG00000089901.1	ENSMUST00000160298.1	protein_coding	chr14:43925390-43933411
chr14	44270829	44275848	+	L1Md_F2	LINE	L1	chr14	44275795	44275797	-	ENSMUST00000228513.1,ENSMUSG00000115287.1	Gm49111	ENSMUSG00000115287.1	ENSMUST00000228513.1	unprocessed_pseudogene	chr14:44275579-44275796
chr14	44315326	44315730	-	BGLII	LTR	ERVK	chr14	44315510	44315512	-	ENSMUST00000228838.1,ENSMUSG00000115536.1	Gm32857	ENSMUSG00000115536.1	ENSMUST00000228838.1	lincRNA	chr14:44226220-44315511
chr14	44632450	44637467	+	L1Md_F2	LINE	L1	chr14	44637200	44637202	-	ENSMUST00000226445.1,ENSMUSG00000115801.1	AC160336.1	ENSMUSG00000115801.1	ENSMUST00000226445.1	lincRNA	chr14:44544055-44637201
chr14	44943501	44944558	-	ORR1A4-int	LTR	ERVL-MaLR	chr14	44944128	44944130	+	ENSMUST00000228178.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000228178.1	transcribed_unprocessed_pseudogene	chr14:44944129-44957572
chr14	44944565	44944884	-	ORR1A4	LTR	ERVL-MaLR	chr14	44944777	44944779	+	ENSMUST00000228573.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000228573.1	transcribed_unprocessed_pseudogene	chr14:44944778-44958426
chr14	44945062	44945557	+	RodERV21-int	LTR	ERV1	chr14	44945072	44945074	+	ENSMUST00000228852.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000228852.1	transcribed_unprocessed_pseudogene	chr14:44945073-44958448
chr14	44945062	44945557	+	RodERV21-int	LTR	ERV1	chr14	44945137	44945139	+	ENSMUST00000227260.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000227260.1	transcribed_unprocessed_pseudogene	chr14:44945138-44958448
chr14	44945548	44949731	+	RodERV21-int	LTR	ERV1	chr14	44947510	44947512	-	ENSMUST00000199328.1,ENSMUSG00000105372.1	Mir327	ENSMUSG00000105372.1	ENSMUST00000199328.1	miRNA	chr14:44947443-44947511
chr14	44956867	44957036	-	L1_Mur2	LINE	L1	chr14	44956873	44956875	+	ENSMUST00000228641.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000228641.1	transcribed_unprocessed_pseudogene	chr14:44956874-44958426
chr14	44956867	44957036	-	L1_Mur2	LINE	L1	chr14	44956890	44956892	+	ENSMUST00000226409.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000226409.1	transcribed_unprocessed_pseudogene	chr14:44956891-44958638
chr14	44956867	44957036	-	L1_Mur2	LINE	L1	chr14	44956891	44956893	+	ENSMUST00000227946.1,ENSMUSG00000085500.9	Gm16976	ENSMUSG00000085500.9	ENSMUST00000227946.1	transcribed_unprocessed_pseudogene	chr14:44956892-44958654
chr14	45006811	45006914	-	PB1D10	SINE	Alu	chr14	45006899	45006901	-	ENSMUST00000168000.1,ENSMUSG00000090709.2	Gm17173	ENSMUSG00000090709.2	ENSMUST00000168000.1	antisense	chr14:44972268-45006900
chr14	45101862	45102371	-	RMER1C	Other	Other	chr14	45102093	45102095	-	ENSMUST00000228441.1,ENSMUSG00000115735.1	Gm49180	ENSMUSG00000115735.1	ENSMUST00000228441.1	lincRNA	chr14:45056497-45102094
chr14	45113965	45114959	+	L1Md_F2	LINE	L1	chr14	45114111	45114113	-	ENSMUST00000227286.1,ENSMUSG00000115814.1	Gm49181	ENSMUSG00000115814.1	ENSMUST00000227286.1	unprocessed_pseudogene	chr14:45113704-45114112
chr14	45113965	45114959	+	L1Md_F2	LINE	L1	chr14	45114707	45114709	-	ENSMUST00000228403.1,ENSMUSG00000115216.1	Gm49183	ENSMUSG00000115216.1	ENSMUST00000228403.1	unprocessed_pseudogene	chr14:45114401-45114708
chr14	45220008	45220047	+	GC_rich	Low_complexity	Low_complexity	chr14	45220016	45220018	+	ENSMUST00000227056.1,ENSMUSG00000049092.11	Gpr137c	ENSMUSG00000049092.11	ENSMUST00000227056.1	protein_coding	chr14:45220017-45220672
chr14	45264935	45265334	-	MTB	LTR	ERVL-MaLR	chr14	45265325	45265327	+	ENSMUST00000151749.1,ENSMUSG00000049092.11	Gpr137c	ENSMUSG00000049092.11	ENSMUST00000151749.1	protein_coding	chr14:45265326-45279253
chr14	45329749	45329797	+	C-rich	Low_complexity	Low_complexity	chr14	45329787	45329789	+	ENSMUST00000022380.8,ENSMUSG00000021832.8	Psmc6	ENSMUSG00000021832.8	ENSMUST00000022380.8	protein_coding	chr14:45329788-45349705
chr14	45340405	45340561	-	B3A	SINE	B2	chr14	45340453	45340455	+	ENSMUST00000226739.1,ENSMUSG00000021832.8	Psmc6	ENSMUSG00000021832.8	ENSMUST00000226739.1	protein_coding	chr14:45340454-45346797
chr14	45371381	45371577	+	B2_Mm2	SINE	B2	chr14	45371506	45371508	+	ENSMUST00000228321.1,ENSMUSG00000053205.9	Styx	ENSMUSG00000053205.9	ENSMUST00000228321.1	protein_coding	chr14:45371507-45373806
chr14	45404726	45405265	-	MT2_Mm	LTR	ERVL	chr14	45404884	45404886	-	ENSMUST00000228304.1,ENSMUSG00000037722.8	Gnpnat1	ENSMUSG00000037722.8	ENSMUST00000228304.1	protein_coding	chr14:45381580-45404885
chr14	45404726	45405265	-	MT2_Mm	LTR	ERVL	chr14	45404912	45404914	-	ENSMUST00000228003.1,ENSMUSG00000037722.8	Gnpnat1	ENSMUSG00000037722.8	ENSMUST00000228003.1	protein_coding	chr14:45383420-45404913
chr14	45404726	45405265	-	MT2_Mm	LTR	ERVL	chr14	45404959	45404961	-	ENSMUST00000179366.1,ENSMUSG00000096383.1	Gm25353	ENSMUSG00000096383.1	ENSMUST00000179366.1	miRNA	chr14:45404840-45404960
chr14	45444735	45445057	-	RMER17C2	LTR	ERVK	chr14	45444988	45444990	-	ENSMUST00000228291.1,ENSMUSG00000115209.1	Gm34250	ENSMUSG00000115209.1	ENSMUST00000228291.1	lincRNA	chr14:45443379-45444989
chr14	45461366	45461647	-	7SK	RNA	RNA	chr14	45461644	45461646	-	ENSMUST00000158144.1,ENSMUSG00000088769.1	Gm22637	ENSMUSG00000088769.1	ENSMUST00000158144.1	misc_RNA	chr14:45461363-45461645
chr14	45483936	45484055	-	B1_Mus1	SINE	Alu	chr14	45483968	45483970	-	ENSMUST00000228769.1,ENSMUSG00000037712.16	Fermt2	ENSMUSG00000037712.16	ENSMUST00000228769.1	protein_coding	chr14:45482517-45483969
chr14	45543619	45543776	+	L2a	LINE	L2	chr14	45543674	45543676	+	ENSMUST00000226815.1,ENSMUSG00000115324.1	AC107711.1	ENSMUSG00000115324.1	ENSMUST00000226815.1	bidirectional_promoter_lncRNA	chr14:45543675-45562933
chr14	45543619	45543776	+	L2a	LINE	L2	chr14	45543682	45543684	+	ENSMUST00000227827.1,ENSMUSG00000115324.1	AC107711.1	ENSMUSG00000115324.1	ENSMUST00000227827.1	bidirectional_promoter_lncRNA	chr14:45543683-45562877
chr14	45558290	45558413	-	MIR	SINE	MIR	chr14	45558329	45558331	-	ENSMUST00000226429.1,ENSMUSG00000115702.1	Gm5206	ENSMUSG00000115702.1	ENSMUST00000226429.1	transcribed_processed_pseudogene	chr14:45555983-45558330
chr14	45563496	45564257	+	RMER1B	Other	Other	chr14	45563833	45563835	+	ENSMUST00000226558.1,ENSMUSG00000085913.2	Gm15601	ENSMUSG00000085913.2	ENSMUST00000226558.1	antisense	chr14:45563834-45595335
chr14	45632323	45632702	-	L1_Mus3	LINE	L1	chr14	45632362	45632364	-	ENSMUST00000226559.1,ENSMUSG00000037697.19	Ddhd1	ENSMUSG00000037697.19	ENSMUST00000226559.1	protein_coding	chr14:45629693-45632363
chr14	45658124	45658170	+	GC_rich	Low_complexity	Low_complexity	chr14	45658141	45658143	-	ENSMUST00000111828.3,ENSMUSG00000037697.19	Ddhd1	ENSMUSG00000037697.19	ENSMUST00000111828.3	protein_coding	chr14:45588467-45658142
chr14	45658124	45658170	+	GC_rich	Low_complexity	Low_complexity	chr14	45658142	45658144	-	ENSMUST00000051310.12,ENSMUSG00000037697.19	Ddhd1	ENSMUSG00000037697.19	ENSMUST00000051310.12	protein_coding	chr14:45593174-45658143
chr14	45668049	45668624	-	MTD-int	LTR	ERVL-MaLR	chr14	45668497	45668499	-	ENSMUST00000138379.2,ENSMUSG00000086124.2	A530076I17Rik	ENSMUSG00000086124.2	ENSMUST00000138379.2	lincRNA	chr14:45665955-45668498
chr14	45754369	45754862	+	MT2_Mm	LTR	ERVL	chr14	45754688	45754690	+	ENSMUST00000131006.1,ENSMUSG00000085866.1	Gm15218	ENSMUSG00000085866.1	ENSMUST00000131006.1	lincRNA	chr14:45754689-45993170
chr14	46083574	46084029	+	L1Md_F2	LINE	L1	chr14	46084027	46084029	+	ENSMUST00000227415.1,ENSMUSG00000044285.8	Gm1821	ENSMUSG00000044285.8	ENSMUST00000227415.1	transcribed_processed_pseudogene	chr14:46084028-46085000
chr14	46390542	46390688	+	C-rich	Low_complexity	Low_complexity	chr14	46390668	46390670	-	ENSMUST00000074077.11,ENSMUSG00000021835.15	Bmp4	ENSMUSG00000021835.15	ENSMUST00000074077.11	protein_coding	chr14:46383520-46390669
chr14	46390542	46390688	+	C-rich	Low_complexity	Low_complexity	chr14	46390549	46390551	-	ENSMUST00000100676.2,ENSMUSG00000021835.15	Bmp4	ENSMUSG00000021835.15	ENSMUST00000100676.2	protein_coding	chr14:46383707-46390550
chr14	46516372	46516495	-	MER5A	DNA	hAT-Charlie	chr14	46516441	46516443	-	ENSMUST00000227980.1,ENSMUSG00000115158.1	Gm48912	ENSMUSG00000115158.1	ENSMUST00000227980.1	lincRNA	chr14:46482225-46516442
chr14	46587718	46588043	-	ORR1E	LTR	ERVL-MaLR	chr14	46587982	46587984	-	ENSMUST00000227803.1,ENSMUSG00000085123.2	Rubie	ENSMUSG00000085123.2	ENSMUST00000227803.1	lincRNA	chr14:46568263-46587983
chr14	46607470	46607613	+	B1_Mus1	SINE	Alu	chr14	46607551	46607553	+	ENSMUST00000226841.1,ENSMUSG00000115828.1	Gm18761	ENSMUSG00000115828.1	ENSMUST00000226841.1	processed_pseudogene	chr14:46607552-46608952
chr14	46637365	46637659	+	RLTR51B_Mm	LTR	ERVK?	chr14	46637407	46637409	-	ENSMUST00000228663.1,ENSMUSG00000115781.1	Gm49319	ENSMUSG00000115781.1	ENSMUST00000228663.1	processed_transcript	chr14:46528680-46637408
chr14	46637365	46637659	+	RLTR51B_Mm	LTR	ERVK?	chr14	46637407	46637409	-	ENSMUST00000228523.1,ENSMUSG00000115781.1	Gm49319	ENSMUSG00000115781.1	ENSMUST00000228523.1	processed_transcript	chr14:46568263-46637408
chr14	46637365	46637659	+	RLTR51B_Mm	LTR	ERVK?	chr14	46637422	46637424	-	ENSMUST00000226569.1,ENSMUSG00000115665.1	4933425B07Rik	ENSMUSG00000115665.1	ENSMUST00000226569.1	lincRNA	chr14:46602806-46637423
chr14	46745784	46751205	+	L1Md_T	LINE	L1	chr14	46746398	46746400	-	ENSMUST00000226531.1,ENSMUSG00000115690.1	Gm48924	ENSMUSG00000115690.1	ENSMUST00000226531.1	lincRNA	chr14:46743215-46746399
chr14	46817663	46817805	+	B1_Mus2	SINE	Alu	chr14	46817792	46817794	-	ENSMUST00000226842.1,ENSMUSG00000062014.13	Gmfb	ENSMUSG00000062014.13	ENSMUST00000226842.1	protein_coding	chr14:46815198-46817793
chr14	46882803	46882876	+	GC_rich	Low_complexity	Low_complexity	chr14	46882853	46882855	+	ENSMUST00000022386.14,ENSMUSG00000021838.17	Samd4	ENSMUSG00000021838.17	ENSMUST00000022386.14	protein_coding	chr14:46882854-47103150
chr14	46885062	46885118	+	C-rich	Low_complexity	Low_complexity	chr14	46885063	46885065	-	ENSMUST00000228355.1,ENSMUSG00000115410.1	2810457G06Rik	ENSMUSG00000115410.1	ENSMUST00000228355.1	antisense	chr14:46883698-46885064
chr14	47001347	47001397	+	GA-rich	Low_complexity	Low_complexity	chr14	47001364	47001366	+	ENSMUST00000226684.1,ENSMUSG00000021838.17	Samd4	ENSMUSG00000021838.17	ENSMUST00000226684.1	protein_coding	chr14:47001365-47001747
chr14	47116029	47116071	+	(TC)n	Simple_repeat	Simple_repeat	chr14	47116070	47116072	-	ENSMUST00000228010.1,ENSMUSG00000072589.4	Gm10371	ENSMUSG00000072589.4	ENSMUST00000228010.1	antisense	chr14:47109656-47116071
chr14	47116071	47116107	+	(CA)n	Simple_repeat	Simple_repeat	chr14	47116070	47116072	-	ENSMUST00000228010.1,ENSMUSG00000072589.4	Gm10371	ENSMUSG00000072589.4	ENSMUST00000228010.1	antisense	chr14:47109656-47116071
chr14	47270858	47270964	-	U6	snRNA	snRNA	chr14	47270963	47270965	-	ENSMUST00000122699.1,ENSMUSG00000084648.1	Gm24378	ENSMUSG00000084648.1	ENSMUST00000122699.1	snRNA	chr14:47270859-47270964
chr14	47270964	47271077	-	B1_Mus1	SINE	Alu	chr14	47270963	47270965	-	ENSMUST00000122699.1,ENSMUSG00000084648.1	Gm24378	ENSMUSG00000084648.1	ENSMUST00000122699.1	snRNA	chr14:47270859-47270964
chr14	47308532	47308564	+	(T)n	Simple_repeat	Simple_repeat	chr14	47308549	47308551	+	ENSMUST00000164235.2,ENSMUSG00000021840.17	Mapk1ip1l	ENSMUSG00000021840.17	ENSMUST00000164235.2	protein_coding	chr14:47308550-47323204
chr14	47422251	47422535	+	ORR1A3-int	LTR	ERVL-MaLR	chr14	47422416	47422418	+	ENSMUST00000226648.1,ENSMUSG00000115617.1	Gm48975	ENSMUSG00000115617.1	ENSMUST00000226648.1	lincRNA	chr14:47422417-47427570
chr14	47450071	47450589	+	MT2_Mm	LTR	ERVL	chr14	47450420	47450422	+	ENSMUST00000226395.1,ENSMUSG00000037536.14	Fbxo34	ENSMUSG00000037536.14	ENSMUST00000226395.1	protein_coding	chr14:47450421-47529449
chr14	47473935	47474224	+	MLT-int	LTR	ERVL-MaLR	chr14	47474176	47474178	+	ENSMUST00000226432.1,ENSMUSG00000037536.14	Fbxo34	ENSMUSG00000037536.14	ENSMUST00000226432.1	protein_coding	chr14:47474177-47529464
chr14	47491527	47491614	-	MIRb	SINE	MIR	chr14	47491567	47491569	+	ENSMUST00000228735.1,ENSMUSG00000115570.1	Gm48986	ENSMUSG00000115570.1	ENSMUST00000228735.1	TEC	chr14:47491568-47492783
chr14	47729537	47729723	-	B3	SINE	B2	chr14	47729658	47729660	+	ENSMUST00000190857.1,ENSMUSG00000021843.17	Ktn1	ENSMUSG00000021843.17	ENSMUST00000190857.1	protein_coding	chr14:47729659-47736561
chr14	47801393	47801534	+	MER5A	DNA	hAT-Charlie	chr14	47801464	47801466	-	ENSMUST00000228127.1,ENSMUSG00000115046.1	Gm49302	ENSMUSG00000115046.1	ENSMUST00000228127.1	lincRNA	chr14:47800740-47801465
chr14	47898455	47898871	-	RMER17C	LTR	ERVK	chr14	47898850	47898852	+	ENSMUST00000228579.1,ENSMUSG00000115609.1	4930447J18Rik	ENSMUSG00000115609.1	ENSMUST00000228579.1	lincRNA	chr14:47898851-47900094
chr14	47898455	47898871	-	RMER17C	LTR	ERVK	chr14	47898850	47898852	+	ENSMUST00000226143.1,ENSMUSG00000115609.1	4930447J18Rik	ENSMUSG00000115609.1	ENSMUST00000226143.1	lincRNA	chr14:47898851-47915716
chr14	47898455	47898871	-	RMER17C	LTR	ERVK	chr14	47898852	47898854	+	ENSMUST00000227343.1,ENSMUSG00000115609.1	4930447J18Rik	ENSMUSG00000115609.1	ENSMUST00000227343.1	lincRNA	chr14:47898853-47944189
chr14	47993087	47994089	-	RMER17B2	LTR	ERVK	chr14	47993802	47993804	-	ENSMUST00000227382.1,ENSMUSG00000115403.1	Gm49304	ENSMUSG00000115403.1	ENSMUST00000227382.1	lincRNA	chr14:47991528-47993803
chr14	47993087	47994089	-	RMER17B2	LTR	ERVK	chr14	47993940	47993942	+	ENSMUST00000227352.1,ENSMUSG00000115425.1	Gm49305	ENSMUSG00000115425.1	ENSMUST00000227352.1	lincRNA	chr14:47993941-47997714
chr14	48120774	48120836	+	G-rich	Low_complexity	Low_complexity	chr14	48120822	48120824	+	ENSMUST00000073150.5,ENSMUSG00000021846.9	Peli2	ENSMUSG00000021846.9	ENSMUST00000073150.5	protein_coding	chr14:48120823-48260888
chr14	48184427	48185296	-	RMER1C	Other	Other	chr14	48185005	48185007	+	ENSMUST00000228519.1,ENSMUSG00000021846.9	Peli2	ENSMUSG00000021846.9	ENSMUST00000228519.1	protein_coding	chr14:48185006-48256824
chr14	48196514	48196912	+	Charlie1a	DNA	hAT-Charlie	chr14	48196759	48196761	+	ENSMUST00000227419.1,ENSMUSG00000115555.1	Gm49307	ENSMUSG00000115555.1	ENSMUST00000227419.1	TEC	chr14:48196760-48198030
chr14	48198541	48198954	+	HAL1	LINE	L1	chr14	48198715	48198717	+	ENSMUST00000081029.2,ENSMUSG00000021846.9	Peli2	ENSMUSG00000021846.9	ENSMUST00000081029.2	protein_coding	chr14:48198716-48228413
chr14	48362260	48362953	+	RMER1A	Other	Other	chr14	48362614	48362616	-	ENSMUST00000228144.1,ENSMUSG00000114991.1	1700128I11Rik	ENSMUSG00000114991.1	ENSMUST00000228144.1	lincRNA	chr14:48360578-48362615
chr14	48364329	48364402	+	(CATA)n	Simple_repeat	Simple_repeat	chr14	48364401	48364403	-	ENSMUST00000116872.1,ENSMUSG00000080522.1	Gm23881	ENSMUSG00000080522.1	ENSMUST00000116872.1	miRNA	chr14:48364337-48364402
chr14	48364402	48364435	+	B3	SINE	B2	chr14	48364401	48364403	-	ENSMUST00000116872.1,ENSMUSG00000080522.1	Gm23881	ENSMUSG00000080522.1	ENSMUST00000116872.1	miRNA	chr14:48364337-48364402
chr14	48479523	48479630	+	RSINE1	SINE	B4	chr14	48479552	48479554	+	ENSMUST00000226373.1,ENSMUSG00000036339.18	Tmem260	ENSMUSG00000036339.18	ENSMUST00000226373.1	protein_coding	chr14:48479553-48482796
chr14	48518199	48518339	+	B1F	SINE	Alu	chr14	48518235	48518237	+	ENSMUST00000227235.1,ENSMUSG00000115756.1	Gm49519	ENSMUSG00000115756.1	ENSMUST00000227235.1	processed_transcript	chr14:48518236-48524698
chr14	48523632	48523677	+	C-rich	Low_complexity	Low_complexity	chr14	48523632	48523634	+	ENSMUST00000227732.1,ENSMUSG00000115756.1	Gm49519	ENSMUSG00000115756.1	ENSMUST00000227732.1	processed_transcript	chr14:48523633-48560287
chr14	48537897	48538183	+	L4_B_Mam	LINE	RTE-X	chr14	48537990	48537992	+	ENSMUST00000228808.1,ENSMUSG00000115725.1	4930572G02Rik	ENSMUSG00000115725.1	ENSMUST00000228808.1	lincRNA	chr14:48537991-48545022
chr14	48636021	48636183	-	RSINE1	SINE	B4	chr14	48636140	48636142	+	ENSMUST00000228915.1,ENSMUSG00000115376.1	Gm35766	ENSMUSG00000115376.1	ENSMUST00000228915.1	lincRNA	chr14:48636141-48639714
chr14	48652498	48652592	+	U6	snRNA	snRNA	chr14	48652498	48652500	+	ENSMUST00000157131.1,ENSMUSG00000087756.1	Gm23469	ENSMUSG00000087756.1	ENSMUST00000157131.1	snRNA	chr14:48652499-48652602
chr14	48695981	48696088	-	U6	snRNA	snRNA	chr14	48695980	48695982	-	ENSMUST00000226751.1,ENSMUSG00000115194.1	Gm48909	ENSMUSG00000115194.1	ENSMUST00000226751.1	processed_pseudogene	chr14:48695601-48695981
chr14	48695981	48696088	-	U6	snRNA	snRNA	chr14	48696087	48696089	-	ENSMUST00000175463.1,ENSMUSG00000095299.1	Gm25380	ENSMUSG00000095299.1	ENSMUST00000175463.1	snRNA	chr14:48695982-48696088
chr14	48704125	48704201	+	GA-rich	Low_complexity	Low_complexity	chr14	48704183	48704185	+	ENSMUST00000227165.1,ENSMUSG00000115429.1	Gm49153	ENSMUSG00000115429.1	ENSMUST00000227165.1	TEC	chr14:48704184-48706120
chr14	49001734	49001836	-	U1	snRNA	snRNA	chr14	49001835	49001837	-	ENSMUST00000157129.1,ENSMUSG00000087754.1	Gm23470	ENSMUSG00000087754.1	ENSMUST00000157129.1	snRNA	chr14:49001717-49001836
chr14	49001836	49001985	+	Lx6	LINE	L1	chr14	49001835	49001837	-	ENSMUST00000157129.1,ENSMUSG00000087754.1	Gm23470	ENSMUSG00000087754.1	ENSMUST00000157129.1	snRNA	chr14:49001717-49001836
chr14	49023534	49023618	+	Charlie9	DNA	hAT-Charlie	chr14	49023533	49023535	-	ENSMUST00000160453.1,ENSMUSG00000061244.14	Exoc5	ENSMUSG00000061244.14	ENSMUST00000160453.1	protein_coding	chr14:49017459-49023534
chr14	49028381	49028712	+	L1MA6	LINE	L1	chr14	49028568	49028570	-	ENSMUST00000226647.1,ENSMUSG00000115624.1	Gm49204	ENSMUSG00000115624.1	ENSMUST00000226647.1	TEC	chr14:49023930-49028569
chr14	49066064	49066105	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	49066096	49066098	+	ENSMUST00000227431.1,ENSMUSG00000036291.6	Ap5m1	ENSMUSG00000036291.6	ENSMUST00000227431.1	protein_coding	chr14:49066097-49082810
chr14	49122636	49122740	-	B1F	SINE	Alu	chr14	49122701	49122703	-	ENSMUST00000227409.1,ENSMUSG00000115737.1	Rpl19-ps3	ENSMUSG00000115737.1	ENSMUST00000227409.1	transcribed_processed_pseudogene	chr14:49103507-49122702
chr14	49122636	49122740	-	B1F	SINE	Alu	chr14	49122711	49122713	-	ENSMUST00000226439.1,ENSMUSG00000115737.1	Rpl19-ps3	ENSMUSG00000115737.1	ENSMUST00000226439.1	transcribed_processed_pseudogene	chr14:49112121-49122712
chr14	49172224	49172333	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	49172225	49172227	+	ENSMUST00000153488.8,ENSMUSG00000036282.15	Naa30	ENSMUSG00000036282.15	ENSMUST00000153488.8	protein_coding	chr14:49172226-49190885
chr14	49178490	49178533	+	AT_rich	Low_complexity	Low_complexity	chr14	49178522	49178524	+	ENSMUST00000134984.1,ENSMUSG00000036282.15	Naa30	ENSMUSG00000036282.15	ENSMUST00000134984.1	protein_coding	chr14:49178523-49188254
chr14	49520101	49520169	-	U4	snRNA	snRNA	chr14	49520168	49520170	-	ENSMUST00000158791.1,ENSMUSG00000089416.1	Gm22116	ENSMUSG00000089416.1	ENSMUST00000158791.1	snRNA	chr14:49520029-49520169
chr14	49573039	49573396	-	ORR1B2	LTR	ERVL-MaLR	chr14	49573317	49573319	-	ENSMUST00000158562.1,ENSMUSG00000089187.1	Gm22949	ENSMUSG00000089187.1	ENSMUST00000158562.1	miRNA	chr14:49573214-49573318
chr14	49713454	49713642	+	MTE-int	LTR	ERVL-MaLR	chr14	49713621	49713623	-	ENSMUST00000115992.3,ENSMUSG00000082967.2	Gm16082	ENSMUSG00000082967.2	ENSMUST00000115992.3	processed_pseudogene	chr14:49713246-49713622
chr14	49787904	49788285	-	Lx2B2	LINE	L1	chr14	49788283	49788285	+	ENSMUST00000158313.1,ENSMUSG00000088938.1	Gm22989	ENSMUSG00000088938.1	ENSMUST00000158313.1	snRNA	chr14:49788284-49788369
chr14	50040167	50040480	+	RLTR42-int	LTR	ERVK	chr14	50040374	50040376	-	ENSMUST00000206920.2,ENSMUSG00000068437.4	Olfr725	ENSMUSG00000068437.4	ENSMUST00000206920.2	protein_coding	chr14:50034314-50040375
chr14	50061134	50061449	+	RLTR46A2	LTR	ERVK	chr14	50061359	50061361	+	ENSMUST00000193092.1,ENSMUSG00000102189.1	Gm37194	ENSMUSG00000102189.1	ENSMUST00000193092.1	TEC	chr14:50061360-50064390
chr14	50320864	50320899	+	AT_rich	Low_complexity	Low_complexity	chr14	50320867	50320869	-	ENSMUST00000050928.2,ENSMUSG00000045306.3	Olfr734	ENSMUSG00000045306.3	ENSMUST00000050928.2	protein_coding	chr14:50319836-50320868
chr14	50692809	50692936	-	B1_Mur1	SINE	Alu	chr14	50692903	50692905	-	ENSMUST00000213238.1,ENSMUSG00000057179.6	Olfr747	ENSMUSG00000057179.6	ENSMUST00000213238.1	protein_coding	chr14:50680657-50692904
chr14	50731052	50731159	+	U6	snRNA	snRNA	chr14	50731052	50731054	+	ENSMUST00000083041.1,ENSMUSG00000096731.1	Gm24316	ENSMUSG00000096731.1	ENSMUST00000083041.1	snRNA	chr14:50731053-50731159
chr14	50830070	50830114	+	G-rich	Low_complexity	Low_complexity	chr14	50830070	50830072	-	ENSMUST00000228562.1,ENSMUSG00000006281.8	Tep1	ENSMUSG00000006281.8	ENSMUST00000228562.1	protein_coding	chr14:50827090-50830071
chr14	50870553	50870613	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr14	50870559	50870561	-	ENSMUST00000006444.8,ENSMUSG00000006281.8	Tep1	ENSMUSG00000006281.8	ENSMUST00000006444.8	protein_coding	chr14:50824059-50870560
chr14	50930805	50930844	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	50930811	50930813	-	ENSMUST00000162957.7,ENSMUSG00000035953.14	Pip4p1	ENSMUSG00000035953.14	ENSMUST00000162957.7	protein_coding	chr14:50927215-50930812
chr14	50930805	50930844	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	50930812	50930814	-	ENSMUST00000161166.7,ENSMUSG00000035953.14	Pip4p1	ENSMUSG00000035953.14	ENSMUST00000161166.7	protein_coding	chr14:50927215-50930813
chr14	50930805	50930844	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	50930832	50930834	-	ENSMUST00000163088.7,ENSMUSG00000035953.14	Pip4p1	ENSMUSG00000035953.14	ENSMUST00000163088.7	protein_coding	chr14:50928922-50930833
chr14	50930805	50930844	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	50930837	50930839	-	ENSMUST00000162935.7,ENSMUSG00000035953.14	Pip4p1	ENSMUSG00000035953.14	ENSMUST00000162935.7	protein_coding	chr14:50929258-50930838
chr14	51057223	51057316	+	MIR3	SINE	MIR	chr14	51057241	51057243	-	ENSMUST00000089798.2,ENSMUSG00000068407.3	Rnase12	ENSMUSG00000068407.3	ENSMUST00000089798.2	protein_coding	chr14:51056698-51057242
chr14	51114417	51114456	-	B1_Mus2	SINE	Alu	chr14	51114425	51114427	+	ENSMUST00000100645.4,ENSMUSG00000072575.4	Eddm3b	ENSMUSG00000072575.4	ENSMUST00000100645.4	protein_coding	chr14:51114426-51117807
chr14	51123545	51124131	-	RMER1C	Other	Other	chr14	51123907	51123909	+	ENSMUST00000226194.1,ENSMUSG00000021880.7	Rnase6	ENSMUSG00000021880.7	ENSMUST00000226194.1	protein_coding	chr14:51123908-51132187
chr14	51831039	51837420	-	L1Md_A	LINE	L1	chr14	51837150	51837152	+	ENSMUST00000183799.1,ENSMUSG00000099191.1	Gm27375	ENSMUSG00000099191.1	ENSMUST00000183799.1	miRNA	chr14:51837151-51837257
chr14	51918692	51918776	+	C-rich	Low_complexity	Low_complexity	chr14	51918760	51918762	+	ENSMUST00000177625.1,ENSMUSG00000008813.13	Tppp2	ENSMUSG00000008813.13	ENSMUST00000177625.1	protein_coding	chr14:51918761-51920699
chr14	52007664	52007799	+	B1_Mus2	SINE	Alu	chr14	52007675	52007677	-	ENSMUST00000226474.1,ENSMUSG00000049295.17	Zfp219	ENSMUSG00000049295.17	ENSMUST00000226474.1	protein_coding	chr14:52006714-52007676
chr14	52014865	52014917	-	Plat_L3	LINE	CR1	chr14	52014911	52014913	-	ENSMUST00000228051.1,ENSMUSG00000049295.17	Zfp219	ENSMUSG00000049295.17	ENSMUST00000228051.1	protein_coding	chr14:52009383-52014912
chr14	52042445	52042496	+	CT-rich	Low_complexity	Low_complexity	chr14	52042458	52042460	-	ENSMUST00000052560.6,ENSMUSG00000044286.6	Olfr221	ENSMUSG00000044286.6	ENSMUST00000052560.6	protein_coding	chr14:52033962-52042459
chr14	52097582	52097623	+	(TAAAAA)n	Simple_repeat	Simple_repeat	chr14	52097618	52097620	-	ENSMUST00000226993.1,ENSMUSG00000060373.15	Hnrnpc	ENSMUSG00000060373.15	ENSMUST00000226993.1	protein_coding	chr14:52084115-52097619
chr14	52118849	52119068	+	MTC	LTR	ERVL-MaLR	chr14	52118976	52118978	+	ENSMUST00000180433.1,ENSMUSG00000057132.16	Rpgrip1	ENSMUSG00000057132.16	ENSMUST00000180433.1	protein_coding	chr14:52118977-52119558
chr14	52149333	52149570	+	GA-rich	Low_complexity	Low_complexity	chr14	52149517	52149519	+	ENSMUST00000181017.7,ENSMUSG00000057132.16	Rpgrip1	ENSMUSG00000057132.16	ENSMUST00000181017.7	protein_coding	chr14:52149518-52160296
chr14	52162912	52163166	-	B4A	SINE	B4	chr14	52163129	52163131	-	ENSMUST00000227577.1,ENSMUSG00000035726.8	Supt16	ENSMUSG00000035726.8	ENSMUST00000227577.1	protein_coding	chr14:52161719-52163130
chr14	52206058	52206259	+	B3	SINE	B2	chr14	52206096	52206098	-	ENSMUST00000147827.7,ENSMUSG00000053754.14	Chd8	ENSMUSG00000053754.14	ENSMUST00000147827.7	protein_coding	chr14:52198476-52206097
chr14	52207618	52207824	-	B3	SINE	B2	chr14	52207702	52207704	-	ENSMUST00000136528.1,ENSMUSG00000053754.14	Chd8	ENSMUSG00000053754.14	ENSMUST00000136528.1	protein_coding	chr14:52205741-52207703
chr14	52278672	52278812	-	B1_Mus2	SINE	Alu	chr14	52278673	52278675	-	ENSMUST00000173046.7,ENSMUSG00000022159.16	Rab2b	ENSMUSG00000022159.16	ENSMUST00000173046.7	protein_coding	chr14:52263710-52278674
chr14	52316223	52316433	+	G-rich	Low_complexity	Low_complexity	chr14	52316322	52316324	-	ENSMUST00000135523.4,ENSMUSG00000049532.11	Sall2	ENSMUSG00000049532.11	ENSMUST00000135523.4	protein_coding	chr14:52311172-52316323
chr14	52342776	52342874	+	U6	snRNA	snRNA	chr14	52342776	52342778	+	ENSMUST00000082821.1,ENSMUSG00000064755.1	Gm26328	ENSMUSG00000064755.1	ENSMUST00000082821.1	snRNA	chr14:52342777-52342883
chr14	52375526	52375566	+	AT_rich	Low_complexity	Low_complexity	chr14	52375525	52375527	-	ENSMUST00000192537.1,ENSMUSG00000103010.1	Gm37504	ENSMUSG00000103010.1	ENSMUST00000192537.1	TEC	chr14:52373153-52375526
chr14	54117053	54117300	+	7SK	RNA	RNA	chr14	54117053	54117055	+	ENSMUST00000158844.1,ENSMUSG00000089469.1	Gm23704	ENSMUSG00000089469.1	ENSMUST00000158844.1	misc_RNA	chr14:54117054-54117393
chr14	54297341	54297635	-	RLTR4_Mm	LTR	ERV1	chr14	54297342	54297344	-	ENSMUST00000199958.1,ENSMUSG00000105703.2	Gm43305	ENSMUSG00000105703.2	ENSMUST00000199958.1	processed_transcript	chr14:54292443-54297343
chr14	54297341	54297635	-	RLTR4_Mm	LTR	ERV1	chr14	54297455	54297457	-	ENSMUST00000225083.1,ENSMUSG00000105703.2	Gm43305	ENSMUSG00000105703.2	ENSMUST00000225083.1	processed_transcript	chr14:54293005-54297456
chr14	54350559	54351713	-	RLTR44-int	LTR	ERVK	chr14	54351635	54351637	-	ENSMUST00000200008.1,ENSMUSG00000105501.1	5330426L24Rik	ENSMUSG00000105501.1	ENSMUST00000200008.1	lincRNA	chr14:54349462-54351636
chr14	54449957	54450064	-	U6	snRNA	snRNA	chr14	54450063	54450065	-	ENSMUST00000179714.1,ENSMUSG00000096030.1	Gm24424	ENSMUSG00000096030.1	ENSMUST00000179714.1	snRNA	chr14:54449958-54450064
chr14	54515598	54515702	-	B1_Mm	SINE	Alu	chr14	54515657	54515659	-	ENSMUST00000138367.1,ENSMUSG00000023110.12	Prmt5	ENSMUSG00000023110.12	ENSMUST00000138367.1	protein_coding	chr14:54514595-54515658
chr14	54554567	54554628	-	B1_Mur3	SINE	Alu	chr14	54554615	54554617	-	ENSMUST00000228043.1,ENSMUSG00000022177.9	Haus4	ENSMUSG00000022177.9	ENSMUST00000228043.1	protein_coding	chr14:54552101-54554616
chr14	54581176	54581281	+	U6	snRNA	snRNA	chr14	54581176	54581178	+	ENSMUST00000082808.1,ENSMUSG00000064742.1	Gm24705	ENSMUSG00000064742.1	ENSMUST00000082808.1	snRNA	chr14:54581177-54581283
chr14	54585359	54585534	-	B2_Mm2	SINE	B2	chr14	54585498	54585500	-	ENSMUST00000228422.1,ENSMUSG00000022179.5	4931414P19Rik	ENSMUSG00000022179.5	ENSMUST00000228422.1	protein_coding	chr14:54584664-54585499
chr14	54605969	54606011	+	GC_rich	Low_complexity	Low_complexity	chr14	54605992	54605994	-	ENSMUST00000022786.5,ENSMUSG00000022179.5	4931414P19Rik	ENSMUSG00000022179.5	ENSMUST00000022786.5	protein_coding	chr14:54583663-54605993
chr14	54621215	54621746	+	RLTR11A2	LTR	ERVK	chr14	54621432	54621434	+	ENSMUST00000228446.1,ENSMUSG00000072423.5	Psmb11	ENSMUSG00000072423.5	ENSMUST00000228446.1	protein_coding	chr14:54621433-54625336
chr14	54640915	54640981	+	GA-rich	Low_complexity	Low_complexity	chr14	54640951	54640953	+	ENSMUST00000169818.2,ENSMUSG00000091306.2	Gm17606	ENSMUSG00000091306.2	ENSMUST00000169818.2	protein_coding	chr14:54640952-54648293
chr14	54646035	54646183	-	RSINE1	SINE	B4	chr14	54646046	54646048	-	ENSMUST00000133706.1,ENSMUSG00000022185.19	Acin1	ENSMUSG00000022185.19	ENSMUST00000133706.1	protein_coding	chr14:54644997-54646047
chr14	54712114	54712189	+	CT-rich	Low_complexity	Low_complexity	chr14	54712173	54712175	-	ENSMUST00000064290.7,ENSMUSG00000052435.7	Cebpe	ENSMUSG00000052435.7	ENSMUST00000064290.7	protein_coding	chr14:54710360-54712174
chr14	54883373	54883453	+	(TCCC)n	Simple_repeat	Simple_repeat	chr14	54883376	54883378	+	ENSMUST00000022806.9,ENSMUSG00000089682.10	Bcl2l2	ENSMUSG00000089682.10	ENSMUST00000022806.9	protein_coding	chr14:54883377-54888234
chr14	54883373	54883453	+	(TCCC)n	Simple_repeat	Simple_repeat	chr14	54883380	54883382	+	ENSMUST00000131243.1,ENSMUSG00000089682.10	Bcl2l2	ENSMUSG00000089682.10	ENSMUST00000131243.1	protein_coding	chr14:54883381-54884069
chr14	54883373	54883453	+	(TCCC)n	Simple_repeat	Simple_repeat	chr14	54883440	54883442	+	ENSMUST00000134077.1,ENSMUSG00000092232.1	Gm20521	ENSMUSG00000092232.1	ENSMUST00000134077.1	protein_coding	chr14:54883441-54898137
chr14	54892388	54892528	+	B1_Mur1	SINE	Alu	chr14	54892499	54892501	+	ENSMUST00000140691.7,ENSMUSG00000022194.15	Pabpn1	ENSMUSG00000022194.15	ENSMUST00000140691.7	protein_coding	chr14:54892500-54897183
chr14	54894149	54894198	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	54894154	54894156	+	ENSMUST00000150975.7,ENSMUSG00000022194.15	Pabpn1	ENSMUSG00000022194.15	ENSMUST00000150975.7	protein_coding	chr14:54894155-54898096
chr14	54894149	54894198	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	54894155	54894157	+	ENSMUST00000172695.1,ENSMUSG00000022194.15	Pabpn1	ENSMUSG00000022194.15	ENSMUST00000172695.1	protein_coding	chr14:54894156-54898056
chr14	54993690	54993785	-	MIRb	SINE	MIR	chr14	54993690	54993692	-	ENSMUST00000228837.1,ENSMUSG00000053093.16	Myh7	ENSMUSG00000053093.16	ENSMUST00000228837.1	protein_coding	chr14:54992302-54993691
chr14	55020800	55020950	-	Tigger7	DNA	TcMar-Tigger	chr14	55020888	55020890	+	ENSMUST00000227833.1,ENSMUSG00000022204.9	Ngdn	ENSMUSG00000022204.9	ENSMUST00000227833.1	protein_coding	chr14:55020889-55021649
chr14	55080335	55080456	+	B1_Mus1	SINE	Alu	chr14	55080451	55080453	-	ENSMUST00000185430.1,ENSMUSG00000040721.9	Zfhx2	ENSMUSG00000040721.9	ENSMUST00000185430.1	protein_coding	chr14:55074569-55080452
chr14	55092311	55092340	+	(TCC)n	Simple_repeat	Simple_repeat	chr14	55092323	55092325	-	ENSMUST00000036328.8,ENSMUSG00000040721.9	Zfhx2	ENSMUSG00000040721.9	ENSMUST00000036328.8	protein_coding	chr14:55060262-55092324
chr14	55280552	55280726	-	MTC	LTR	ERVL-MaLR	chr14	55280686	55280688	-	ENSMUST00000227782.1,ENSMUSG00000114987.1	Gm49022	ENSMUSG00000114987.1	ENSMUST00000227782.1	lincRNA	chr14:55276834-55280687
chr14	55490607	55490654	+	(A)n	Simple_repeat	Simple_repeat	chr14	55490650	55490652	+	ENSMUST00000228877.1,ENSMUSG00000022211.9	Carmil3	ENSMUSG00000022211.9	ENSMUST00000228877.1	protein_coding	chr14:55490651-55508272
chr14	55502557	55502678	+	PB1	SINE	Alu	chr14	55502656	55502658	+	ENSMUST00000227088.1,ENSMUSG00000022211.9	Carmil3	ENSMUSG00000022211.9	ENSMUST00000227088.1	protein_coding	chr14:55502657-55504058
chr14	55582360	55582533	+	B3	SINE	B2	chr14	55582423	55582425	-	ENSMUST00000173169.1,ENSMUSG00000022217.14	Emc9	ENSMUSG00000022217.14	ENSMUST00000173169.1	protein_coding	chr14:55581521-55582424
chr14	55590148	55590255	-	MIR3	SINE	MIR	chr14	55590148	55590150	-	ENSMUST00000161027.7,ENSMUSG00000079197.10	Psme2	ENSMUSG00000079197.10	ENSMUST00000161027.7	protein_coding	chr14:55588054-55590149
chr14	55626403	55626522	+	B1_Mus1	SINE	Alu	chr14	55626431	55626433	-	ENSMUST00000141848.1,ENSMUSG00000002319.16	Ipo4	ENSMUSG00000002319.16	ENSMUST00000141848.1	protein_coding	chr14:55625716-55626432
chr14	55626403	55626522	+	B1_Mus1	SINE	Alu	chr14	55626416	55626418	-	ENSMUST00000146528.7,ENSMUSG00000002319.16	Ipo4	ENSMUSG00000002319.16	ENSMUST00000146528.7	protein_coding	chr14:55625722-55626417
chr14	55664208	55664301	-	B1_Mus1	SINE	Alu	chr14	55664295	55664297	-	ENSMUST00000227157.1,ENSMUSG00000010376.15	Nedd8	ENSMUSG00000010376.15	ENSMUST00000227157.1	protein_coding	chr14:55662403-55664296
chr14	55683869	55683917	-	U2	snRNA	snRNA	chr14	55683916	55683918	-	ENSMUST00000157777.1,ENSMUSG00000088402.1	Gm25887	ENSMUSG00000088402.1	ENSMUST00000157777.1	snRNA	chr14:55683834-55683917
chr14	55683917	55684071	+	L1MCa	LINE	L1	chr14	55683916	55683918	-	ENSMUST00000157777.1,ENSMUSG00000088402.1	Gm25887	ENSMUSG00000088402.1	ENSMUST00000157777.1	snRNA	chr14:55683834-55683917
chr14	55720059	55720287	-	URR1B	DNA	hAT-Charlie	chr14	55720132	55720134	-	ENSMUST00000227617.1,ENSMUSG00000040472.15	Rabggta	ENSMUSG00000040472.15	ENSMUST00000227617.1	protein_coding	chr14:55719151-55720133
chr14	55748717	55749281	+	RLTR48A	LTR	ERV1	chr14	55749225	55749227	+	ENSMUST00000227300.1,ENSMUSG00000019297.9	Nop9	ENSMUSG00000019297.9	ENSMUST00000227300.1	protein_coding	chr14:55749226-55752558
chr14	55773060	55773108	+	(TCTA)n	Simple_repeat	Simple_repeat	chr14	55773088	55773090	-	ENSMUST00000226575.1,ENSMUSG00000022220.14	Adcy4	ENSMUSG00000022220.14	ENSMUST00000226575.1	protein_coding	chr14:55771416-55773089
chr14	55937431	55937780	-	RMER17A-int	LTR	ERVK	chr14	55937594	55937596	-	ENSMUST00000227704.1,ENSMUSG00000114978.1	Gm48925	ENSMUSG00000114978.1	ENSMUST00000227704.1	lincRNA	chr14:55935606-55937595
chr14	56173382	56173790	+	RLTR15	LTR	ERVK	chr14	56173750	56173752	+	ENSMUST00000223614.1,ENSMUSG00000114303.1	Gm4022	ENSMUSG00000114303.1	ENSMUST00000223614.1	antisense	chr14:56173751-56207735
chr14	56450154	56450918	-	L1VL2	LINE	L1	chr14	56450572	56450574	+	ENSMUST00000225621.1,ENSMUSG00000000365.9	Rnf17	ENSMUSG00000000365.9	ENSMUST00000225621.1	protein_coding	chr14:56450573-56487066
chr14	56535970	56536083	+	HY1	scRNA	scRNA	chr14	56535970	56535972	+	ENSMUST00000158545.1,ENSMUSG00000089170.1	Gm22431	ENSMUSG00000089170.1	ENSMUST00000158545.1	misc_RNA	chr14:56535971-56536077
chr14	56655129	56655450	-	ORR1E	LTR	ERVL-MaLR	chr14	56655334	56655336	+	ENSMUST00000162312.1,ENSMUSG00000054509.7	Parp4	ENSMUSG00000054509.7	ENSMUST00000162312.1	protein_coding	chr14:56655335-56659792
chr14	56672115	56672233	-	PB1D9	SINE	Alu	chr14	56672231	56672233	+	ENSMUST00000130246.1,ENSMUSG00000079184.10	Mphosph8	ENSMUSG00000079184.10	ENSMUST00000130246.1	protein_coding	chr14:56672232-56673977
chr14	56701119	56701300	-	B2_Mm2	SINE	B2	chr14	56701267	56701269	-	ENSMUST00000180682.1,ENSMUSG00000097743.1	Gm16973	ENSMUSG00000097743.1	ENSMUST00000180682.1	lincRNA	chr14:56697347-56701268
chr14	56811453	56811517	+	C-rich	Low_complexity	Low_complexity	chr14	56811463	56811465	-	ENSMUST00000173954.2,ENSMUSG00000040123.17	Zmym5	ENSMUSG00000040123.17	ENSMUST00000173954.2	protein_coding	chr14:56790588-56811464
chr14	56811943	56811992	+	C-rich	Low_complexity	Low_complexity	chr14	56811988	56811990	+	ENSMUST00000186474.2,ENSMUSG00000100017.2	2410022M11Rik	ENSMUSG00000100017.2	ENSMUST00000186474.2	bidirectional_promoter_lncRNA	chr14:56811989-56813899
chr14	56852607	56853050	-	RLTR25B	LTR	ERVK	chr14	56852815	56852817	-	ENSMUST00000157316.2,ENSMUSG00000087941.2	Gm27635	ENSMUSG00000087941.2	ENSMUST00000157316.2	snRNA	chr14:56852758-56852816
chr14	56852607	56853050	-	RLTR25B	LTR	ERVK	chr14	56852887	56852889	-	ENSMUST00000157555.1,ENSMUSG00000088180.1	Gm22218	ENSMUSG00000088180.1	ENSMUST00000157555.1	snRNA	chr14:56852830-56852888
chr14	57179157	57179188	+	(TTGG)n	Simple_repeat	Simple_repeat	chr14	57179159	57179161	-	ENSMUST00000225618.1,ENSMUSG00000114530.1	Gm48725	ENSMUSG00000114530.1	ENSMUST00000225618.1	processed_pseudogene	chr14:57178978-57179160
chr14	57569892	57570105	+	MER20	DNA	hAT-Charlie	chr14	57569928	57569930	-	ENSMUST00000225504.1,ENSMUSG00000021951.6	Eef1akmt1	ENSMUSG00000021951.6	ENSMUST00000225504.1	protein_coding	chr14:57550499-57569929
chr14	57798395	57798447	+	G-rich	Low_complexity	Low_complexity	chr14	57798425	57798427	+	ENSMUST00000143600.1,ENSMUSG00000021963.17	Sap18	ENSMUSG00000021963.17	ENSMUST00000143600.1	protein_coding	chr14:57798426-57802147
chr14	57798395	57798447	+	G-rich	Low_complexity	Low_complexity	chr14	57798423	57798425	+	ENSMUST00000175043.1,ENSMUSG00000092784.1	Mir3077	ENSMUSG00000092784.1	ENSMUST00000175043.1	miRNA	chr14:57798424-57798487
chr14	57831069	57831209	-	U1	snRNA	snRNA	chr14	57831208	57831210	-	ENSMUST00000083440.1,ENSMUSG00000065374.1	Gm22738	ENSMUSG00000065374.1	ENSMUST00000083440.1	snRNA	chr14:57831063-57831209
chr14	59046111	59046288	+	B3A	SINE	B2	chr14	59046120	59046122	+	ENSMUST00000225652.1,ENSMUSG00000114720.1	Gm41162	ENSMUSG00000114720.1	ENSMUST00000225652.1	lincRNA	chr14:59046121-59067224
chr14	59086925	59087320	-	MTA_Mm	LTR	ERVL-MaLR	chr14	59087117	59087119	-	ENSMUST00000223800.1,ENSMUSG00000114289.1	Gm48453	ENSMUSG00000114289.1	ENSMUST00000223800.1	lincRNA	chr14:59084136-59087118
chr14	59222539	59222686	-	B1F1	SINE	Alu	chr14	59222587	59222589	+	ENSMUST00000147280.1,ENSMUSG00000035469.17	Rcbtb1	ENSMUSG00000035469.17	ENSMUST00000147280.1	protein_coding	chr14:59222588-59224684
chr14	59409613	59409770	-	MIRb	SINE	MIR	chr14	59409654	59409656	-	ENSMUST00000159640.1,ENSMUSG00000071350.12	Setdb2	ENSMUSG00000071350.12	ENSMUST00000159640.1	protein_coding	chr14:59402264-59409655
chr14	59440865	59440900	+	GC_rich	Low_complexity	Low_complexity	chr14	59440883	59440885	-	ENSMUST00000161459.7,ENSMUSG00000071350.12	Setdb2	ENSMUSG00000071350.12	ENSMUST00000161459.7	protein_coding	chr14:59402009-59440884
chr14	59440865	59440900	+	GC_rich	Low_complexity	Low_complexity	chr14	59440876	59440878	-	ENSMUST00000095775.9,ENSMUSG00000071350.12	Setdb2	ENSMUSG00000071350.12	ENSMUST00000095775.9	protein_coding	chr14:59402011-59440877
chr14	59440865	59440900	+	GC_rich	Low_complexity	Low_complexity	chr14	59440874	59440876	-	ENSMUST00000111253.2,ENSMUSG00000071350.12	Setdb2	ENSMUSG00000071350.12	ENSMUST00000111253.2	protein_coding	chr14:59422521-59440875
chr14	59440865	59440900	+	GC_rich	Low_complexity	Low_complexity	chr14	59440872	59440874	-	ENSMUST00000160904.1,ENSMUSG00000071350.12	Setdb2	ENSMUSG00000071350.12	ENSMUST00000160904.1	protein_coding	chr14:59431146-59440873
chr14	60086907	60087081	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	60087070	60087072	+	ENSMUST00000149364.1,ENSMUSG00000086112.1	4930563I02Rik	ENSMUSG00000086112.1	ENSMUST00000149364.1	antisense	chr14:60087071-60096083
chr14	60232859	60233183	+	L1MC4a	LINE	L1	chr14	60232976	60232978	-	ENSMUST00000223713.1,ENSMUSG00000114797.1	Gm49336	ENSMUSG00000114797.1	ENSMUST00000223713.1	protein_coding	chr14:60223375-60232977
chr14	61342969	61343067	-	U6	snRNA	snRNA	chr14	61343066	61343068	-	ENSMUST00000158628.1,ENSMUSG00000089253.1	Gm25716	ENSMUSG00000089253.1	ENSMUST00000158628.1	snRNA	chr14:61342964-61343067
chr14	61492503	61492689	+	ORR1F	LTR	ERVL-MaLR	chr14	61492687	61492689	+	ENSMUST00000228251.1,ENSMUSG00000115656.1	4930556J02Rik	ENSMUSG00000115656.1	ENSMUST00000228251.1	lincRNA	chr14:61492688-61500382
chr14	61492716	61493098	-	L2	LINE	L2	chr14	61492938	61492940	+	ENSMUST00000227369.1,ENSMUSG00000115656.1	4930556J02Rik	ENSMUSG00000115656.1	ENSMUST00000227369.1	lincRNA	chr14:61492939-61527389
chr14	62204326	62204438	-	MTEb	LTR	ERVL-MaLR	chr14	62204351	62204353	-	ENSMUST00000183203.1,ENSMUSG00000098096.1	Gm26969	ENSMUSG00000098096.1	ENSMUST00000183203.1	lincRNA	chr14:62201915-62204352
chr14	62520911	62521033	+	B2_Mm2	SINE	B2	chr14	62521022	62521024	+	ENSMUST00000082622.1,ENSMUSG00000064556.1	Gm24625	ENSMUSG00000064556.1	ENSMUST00000082622.1	snoRNA	chr14:62521023-62521152
chr14	62555693	62555744	+	GC_rich	Low_complexity	Low_complexity	chr14	62555736	62555738	+	ENSMUST00000162987.7,ENSMUSG00000035184.15	Fam124a	ENSMUSG00000035184.15	ENSMUST00000162987.7	protein_coding	chr14:62555737-62588523
chr14	62555693	62555744	+	GC_rich	Low_complexity	Low_complexity	chr14	62555736	62555738	+	ENSMUST00000161899.7,ENSMUSG00000035184.15	Fam124a	ENSMUSG00000035184.15	ENSMUST00000161899.7	protein_coding	chr14:62555737-62606039
chr14	62555693	62555744	+	GC_rich	Low_complexity	Low_complexity	chr14	62555736	62555738	+	ENSMUST00000039064.7,ENSMUSG00000035184.15	Fam124a	ENSMUSG00000035184.15	ENSMUST00000039064.7	protein_coding	chr14:62555737-62608486
chr14	62566163	62567280	-	Lx9	LINE	L1	chr14	62566920	62566922	-	ENSMUST00000209021.1,ENSMUSG00000100486.7	Gm4131	ENSMUSG00000100486.7	ENSMUST00000209021.1	protein_coding	chr14:62463610-62566921
chr14	62635093	62635173	-	MTC	LTR	ERVL-MaLR	chr14	62635092	62635094	-	ENSMUST00000179617.1,ENSMUSG00000096402.1	Gm23816	ENSMUSG00000096402.1	ENSMUST00000179617.1	snoRNA	chr14:62634962-62635093
chr14	62837669	62837689	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	62837677	62837679	+	ENSMUST00000014691.9,ENSMUSG00000014547.10	Wdfy2	ENSMUSG00000014547.10	ENSMUST00000014691.9	protein_coding	chr14:62837678-62961509
chr14	62869714	62869832	+	5S	rRNA	rRNA	chr14	62869713	62869715	+	ENSMUST00000122516.1,ENSMUSG00000084465.1	n-R5s47	ENSMUSG00000084465.1	ENSMUST00000122516.1	rRNA	chr14:62869714-62869832
chr14	63099535	63099633	+	U6	snRNA	snRNA	chr14	63099535	63099537	+	ENSMUST00000082465.1,ENSMUSG00000064399.1	Gm23629	ENSMUSG00000064399.1	ENSMUST00000082465.1	snRNA	chr14:63099536-63099642
chr14	63179461	63179590	+	MLT1A	LTR	ERVL-MaLR	chr14	63179577	63179579	-	ENSMUST00000224625.1,ENSMUSG00000021273.10	Fdft1	ENSMUSG00000021273.10	ENSMUST00000224625.1	protein_coding	chr14:63145150-63179578
chr14	63475370	63475526	+	B2_Mm1a	SINE	B2	chr14	63475375	63475377	-	ENSMUST00000226020.1,ENSMUSG00000114258.1	Gm47074	ENSMUSG00000114258.1	ENSMUST00000226020.1	processed_pseudogene	chr14:63475117-63475376
chr14	64086125	64086648	+	RCHARR1	DNA	hAT-Charlie	chr14	64086233	64086235	+	ENSMUST00000063785.11,ENSMUSG00000052099.14	Prss51	ENSMUSG00000052099.14	ENSMUST00000063785.11	protein_coding	chr14:64086234-64097670
chr14	64588520	64588551	+	(T)n	Simple_repeat	Simple_repeat	chr14	64588533	64588535	+	ENSMUST00000181808.2,ENSMUSG00000097545.7	Mir124a-1hg	ENSMUSG00000097545.7	ENSMUST00000181808.2	lincRNA	chr14:64588534-64590476
chr14	64647190	64647342	-	ID_B1	SINE	B4	chr14	64647264	64647266	+	ENSMUST00000224126.1,ENSMUSG00000060012.9	Kif13b	ENSMUSG00000060012.9	ENSMUST00000224126.1	protein_coding	chr14:64647265-64724760
chr14	65173925	65174175	-	RMER2	LTR	ERV1	chr14	65174068	65174070	+	ENSMUST00000225755.1,ENSMUSG00000114693.1	Gm41177	ENSMUSG00000114693.1	ENSMUST00000225755.1	lincRNA	chr14:65174069-65185336
chr14	65174547	65175011	+	MLTR73	LTR	ERV1	chr14	65174958	65174960	-	ENSMUST00000225852.1,ENSMUSG00000114658.1	Gm30008	ENSMUSG00000114658.1	ENSMUST00000225852.1	lincRNA	chr14:65171115-65174959
chr14	65228058	65228272	+	URR1A	DNA	hAT-Charlie	chr14	65228095	65228097	-	ENSMUST00000127272.1,ENSMUSG00000007989.7	Fzd3	ENSMUSG00000007989.7	ENSMUST00000127272.1	protein_coding	chr14:65209719-65228096
chr14	65358378	65358431	-	MIRb	SINE	MIR	chr14	65358388	65358390	+	ENSMUST00000224623.1,ENSMUSG00000034522.10	Zfp395	ENSMUSG00000034522.10	ENSMUST00000224623.1	protein_coding	chr14:65358389-65386388
chr14	65358652	65358716	+	GC_rich	Low_complexity	Low_complexity	chr14	65358675	65358677	+	ENSMUST00000066994.6,ENSMUSG00000034522.10	Zfp395	ENSMUSG00000034522.10	ENSMUST00000066994.6	protein_coding	chr14:65358676-65398930
chr14	65828841	65829019	+	L1MD3	LINE	L1	chr14	65828944	65828946	-	ENSMUST00000131729.1,ENSMUSG00000022034.10	Esco2	ENSMUSG00000022034.10	ENSMUST00000131729.1	protein_coding	chr14:65826961-65828945
chr14	66110523	66111193	-	RLTR48A	LTR	ERV1	chr14	66110659	66110661	-	ENSMUST00000225309.1,ENSMUSG00000022040.8	Ephx2	ENSMUSG00000022040.8	ENSMUST00000225309.1	protein_coding	chr14:66084377-66110660
chr14	66112250	66112919	-	RLTR48A	LTR	ERV1	chr14	66112385	66112387	-	ENSMUST00000224698.1,ENSMUSG00000022040.8	Ephx2	ENSMUSG00000022040.8	ENSMUST00000224698.1	protein_coding	chr14:66084374-66112386
chr14	66140905	66140987	-	MIRb	SINE	MIR	chr14	66140932	66140934	+	ENSMUST00000022620.10,ENSMUSG00000022041.10	Chrna2	ENSMUSG00000022041.10	ENSMUST00000022620.10	protein_coding	chr14:66140933-66152948
chr14	66591616	66591707	-	5S	rRNA	rRNA	chr14	66591694	66591696	-	ENSMUST00000158112.1,ENSMUSG00000088737.1	Gm23899	ENSMUSG00000088737.1	ENSMUST00000158112.1	rRNA	chr14:66591606-66591695
chr14	66911122	66911201	+	GA-rich	Low_complexity	Low_complexity	chr14	66911169	66911171	+	ENSMUST00000089236.10,ENSMUSG00000046204.14	Pnma2	ENSMUSG00000046204.14	ENSMUST00000089236.10	protein_coding	chr14:66911170-66921023
chr14	66914275	66914621	-	ORR1D1	LTR	ERVL-MaLR	chr14	66914315	66914317	+	ENSMUST00000165831.1,ENSMUSG00000046204.14	Pnma2	ENSMUSG00000046204.14	ENSMUST00000165831.1	protein_coding	chr14:66914316-66916035
chr14	66937179	66937451	-	ORR1E	LTR	ERVL-MaLR	chr14	66937364	66937366	+	ENSMUST00000193416.1,ENSMUSG00000104220.1	4930578I07Rik	ENSMUSG00000104220.1	ENSMUST00000193416.1	TEC	chr14:66937365-66938736
chr14	67043335	67043715	-	MTA_Mm	LTR	ERVL-MaLR	chr14	67043528	67043530	-	ENSMUST00000225469.1,ENSMUSG00000022052.9	Ppp2r2a	ENSMUSG00000022052.9	ENSMUST00000225469.1	protein_coding	chr14:67023158-67043529
chr14	67074736	67074944	-	B3	SINE	B2	chr14	67074829	67074831	+	ENSMUST00000184709.1,ENSMUSG00000098365.1	Gm27647	ENSMUSG00000098365.1	ENSMUST00000184709.1	miRNA	chr14:67074830-67074947
chr14	67476673	67477112	-	Charlie29a	DNA	hAT-Charlie	chr14	67476872	67476874	+	ENSMUST00000223991.1,ENSMUSG00000114744.1	Gm38409	ENSMUSG00000114744.1	ENSMUST00000223991.1	lincRNA	chr14:67476873-67502079
chr14	69029203	69029257	+	(CA)n	Simple_repeat	Simple_repeat	chr14	69029237	69029239	+	ENSMUST00000014957.9,ENSMUSG00000014813.9	Stc1	ENSMUSG00000014813.9	ENSMUST00000014957.9	protein_coding	chr14:69029238-69041804
chr14	69158625	69158675	+	G-rich	Low_complexity	Low_complexity	chr14	69158670	69158672	+	ENSMUST00000184266.1,ENSMUSG00000098713.1	Rps2-ps5	ENSMUSG00000098713.1	ENSMUST00000184266.1	processed_pseudogene	chr14:69158671-69159519
chr14	69362511	69362592	-	ID4	SINE	ID	chr14	69362558	69362560	+	ENSMUST00000184234.1,ENSMUSG00000095463.8	Entpd4	ENSMUSG00000095463.8	ENSMUST00000184234.1	protein_coding	chr14:69362559-69366216
chr14	69397718	69398127	-	Lx5b	LINE	L1	chr14	69397770	69397772	-	ENSMUST00000195153.1,ENSMUSG00000102660.1	Gm38378	ENSMUSG00000102660.1	ENSMUST00000195153.1	TEC	chr14:69395504-69397771
chr14	69580761	69580842	-	ID4	SINE	ID	chr14	69580808	69580810	+	ENSMUST00000184506.1,ENSMUSG00000022066.16	Entpd4b	ENSMUSG00000022066.16	ENSMUST00000184506.1	protein_coding	chr14:69580809-69584466
chr14	69615993	69616402	-	Lx5b	LINE	L1	chr14	69616045	69616047	-	ENSMUST00000194830.1,ENSMUSG00000104371.1	Gm37513	ENSMUSG00000104371.1	ENSMUST00000194830.1	TEC	chr14:69613779-69616046
chr14	69640070	69640356	+	B4A	SINE	B4	chr14	69640273	69640275	-	ENSMUST00000183339.7,ENSMUSG00000098975.7	Gm27177	ENSMUSG00000098975.7	ENSMUST00000183339.7	antisense	chr14:69582164-69640274
chr14	69640070	69640356	+	B4A	SINE	B4	chr14	69640273	69640275	-	ENSMUST00000184034.7,ENSMUSG00000098975.7	Gm27177	ENSMUSG00000098975.7	ENSMUST00000184034.7	antisense	chr14:69583352-69640274
chr14	69640070	69640356	+	B4A	SINE	B4	chr14	69640273	69640275	-	ENSMUST00000184792.7,ENSMUSG00000098975.7	Gm27177	ENSMUSG00000098975.7	ENSMUST00000184792.7	antisense	chr14:69592076-69640274
chr14	69705174	69705367	+	CT-rich	Low_complexity	Low_complexity	chr14	69705312	69705314	-	ENSMUST00000128747.1,ENSMUSG00000034194.17	R3hcc1	ENSMUSG00000034194.17	ENSMUST00000128747.1	protein_coding	chr14:69703478-69705313
chr14	69730842	69730986	-	MIRb	SINE	MIR	chr14	69730874	69730876	-	ENSMUST00000224601.1,ENSMUSG00000034190.9	Chmp7	ENSMUSG00000034190.9	ENSMUST00000224601.1	protein_coding	chr14:69728429-69730875
chr14	70311186	70311266	-	ID4_	SINE	ID	chr14	70311239	70311241	-	ENSMUST00000155825.1,ENSMUSG00000022094.15	Slc39a14	ENSMUSG00000022094.15	ENSMUST00000155825.1	protein_coding	chr14:70308772-70311240
chr14	70313844	70313944	-	IMPB_01	Satellite	Satellite	chr14	70313924	70313926	-	ENSMUST00000145040.1,ENSMUSG00000022094.15	Slc39a14	ENSMUSG00000022094.15	ENSMUST00000145040.1	protein_coding	chr14:70310937-70313925
chr14	70495965	70496151	-	B3	SINE	B2	chr14	70496053	70496055	-	ENSMUST00000226601.1,ENSMUSG00000022098.10	Bmp1	ENSMUSG00000022098.10	ENSMUST00000226601.1	protein_coding	chr14:70493319-70496054
chr14	70520142	70520284	+	C-rich	Low_complexity	Low_complexity	chr14	70520148	70520150	-	ENSMUST00000226906.1,ENSMUSG00000022098.10	Bmp1	ENSMUSG00000022098.10	ENSMUST00000226906.1	protein_coding	chr14:70474558-70520149
chr14	70520142	70520284	+	C-rich	Low_complexity	Low_complexity	chr14	70520187	70520189	-	ENSMUST00000022693.8,ENSMUSG00000022098.10	Bmp1	ENSMUSG00000022098.10	ENSMUST00000022693.8	protein_coding	chr14:70474558-70520188
chr14	70520142	70520284	+	C-rich	Low_complexity	Low_complexity	chr14	70520233	70520235	-	ENSMUST00000226246.1,ENSMUSG00000022098.10	Bmp1	ENSMUSG00000022098.10	ENSMUST00000226246.1	protein_coding	chr14:70488955-70520234
chr14	70555839	70555996	-	MIRc	SINE	MIR	chr14	70555899	70555901	+	ENSMUST00000163060.1,ENSMUSG00000022096.14	Hr	ENSMUSG00000022096.14	ENSMUST00000163060.1	protein_coding	chr14:70555900-70573544
chr14	70617718	70617744	+	(A)n	Simple_repeat	Simple_repeat	chr14	70617735	70617737	-	ENSMUST00000227453.1,ENSMUSG00000022099.17	Dmtn	ENSMUSG00000022099.17	ENSMUST00000227453.1	protein_coding	chr14:70613570-70617736
chr14	70636042	70636063	+	GC_rich	Low_complexity	Low_complexity	chr14	70636047	70636049	-	ENSMUST00000022695.15,ENSMUSG00000022099.17	Dmtn	ENSMUSG00000022099.17	ENSMUST00000022695.15	protein_coding	chr14:70602185-70636048
chr14	70772261	70773322	-	MLTR25A	LTR	ERVK	chr14	70773271	70773273	+	ENSMUST00000169106.1,ENSMUSG00000022102.13	Dok2	ENSMUSG00000022102.13	ENSMUST00000169106.1	protein_coding	chr14:70773272-70776012
chr14	70852803	70853293	+	RLTR34B_MM	LTR	ERVK	chr14	70852932	70852934	+	ENSMUST00000190896.1,ENSMUSG00000099528.1	2410012E07Rik	ENSMUSG00000099528.1	ENSMUST00000190896.1	lincRNA	chr14:70852933-70873954
chr14	70890060	70890187	+	GA-rich	Low_complexity	Low_complexity	chr14	70890119	70890121	+	ENSMUST00000022699.9,ENSMUSG00000022103.10	Gfra2	ENSMUSG00000022103.10	ENSMUST00000022699.9	protein_coding	chr14:70890120-70979838
chr14	72131087	72131225	+	U1	snRNA	snRNA	chr14	72131087	72131089	+	ENSMUST00000082551.1,ENSMUSG00000064485.1	Gm23735	ENSMUSG00000064485.1	ENSMUST00000082551.1	snRNA	chr14:72131088-72131221
chr14	72738259	72738373	+	L2b	LINE	L2	chr14	72738312	72738314	-	ENSMUST00000226943.1,ENSMUSG00000115494.1	Gm49293	ENSMUSG00000115494.1	ENSMUST00000226943.1	lincRNA	chr14:72732748-72738313
chr14	72788559	72790531	+	MERVL_2A-int	LTR	ERVL	chr14	72789352	72789354	+	ENSMUST00000227565.1,ENSMUSG00000115532.1	Gm41206	ENSMUSG00000115532.1	ENSMUST00000227565.1	lincRNA	chr14:72789353-72860268
chr14	73142391	73142684	-	L1MA8	LINE	L1	chr14	73142535	73142537	+	ENSMUST00000170370.7,ENSMUSG00000022106.14	Rcbtb2	ENSMUSG00000022106.14	ENSMUST00000170370.7	protein_coding	chr14:73142536-73164719
chr14	73142391	73142684	-	L1MA8	LINE	L1	chr14	73142536	73142538	+	ENSMUST00000164822.7,ENSMUSG00000022106.14	Rcbtb2	ENSMUSG00000022106.14	ENSMUST00000164822.7	protein_coding	chr14:73142537-73184218
chr14	73142391	73142684	-	L1MA8	LINE	L1	chr14	73142557	73142559	+	ENSMUST00000165429.7,ENSMUSG00000022106.14	Rcbtb2	ENSMUSG00000022106.14	ENSMUST00000165429.7	protein_coding	chr14:73142558-73166507
chr14	73142959	73143059	+	C-rich	Low_complexity	Low_complexity	chr14	73142991	73142993	+	ENSMUST00000163533.7,ENSMUSG00000022106.14	Rcbtb2	ENSMUSG00000022106.14	ENSMUST00000163533.7	protein_coding	chr14:73142992-73164783
chr14	73142959	73143059	+	C-rich	Low_complexity	Low_complexity	chr14	73143008	73143010	+	ENSMUST00000171163.1,ENSMUSG00000022106.14	Rcbtb2	ENSMUSG00000022106.14	ENSMUST00000171163.1	protein_coding	chr14:73143009-73164084
chr14	73142959	73143059	+	C-rich	Low_complexity	Low_complexity	chr14	73143016	73143018	+	ENSMUST00000165334.1,ENSMUSG00000022106.14	Rcbtb2	ENSMUSG00000022106.14	ENSMUST00000165334.1	protein_coding	chr14:73143017-73154791
chr14	73187260	73187579	-	ERVB7_1-LTR_MM	LTR	ERVK	chr14	73187320	73187322	-	ENSMUST00000168470.1,ENSMUSG00000090706.1	Gm17233	ENSMUSG00000090706.1	ENSMUST00000168470.1	antisense	chr14:73173820-73187321
chr14	73590440	73590537	+	(TC)n	Simple_repeat	Simple_repeat	chr14	73590507	73590509	+	ENSMUST00000161082.1,ENSMUSG00000022110.13	Sucla2	ENSMUSG00000022110.13	ENSMUST00000161082.1	protein_coding	chr14:73590508-73591033
chr14	73659446	73664794	+	L1Md_F3	LINE	L1	chr14	73661224	73661226	+	ENSMUST00000098874.3,ENSMUSG00000096463.1	Gm21750	ENSMUSG00000096463.1	ENSMUST00000098874.3	protein_coding	chr14:73661225-73662721
chr14	73767861	73767968	-	U6	snRNA	snRNA	chr14	73767967	73767969	-	ENSMUST00000177627.1,ENSMUSG00000093873.1	Gm24540	ENSMUSG00000093873.1	ENSMUST00000177627.1	snRNA	chr14:73767862-73767968
chr14	73767968	73768047	+	MTC-int	LTR	ERVL-MaLR	chr14	73767967	73767969	-	ENSMUST00000177627.1,ENSMUSG00000093873.1	Gm24540	ENSMUSG00000093873.1	ENSMUST00000177627.1	snRNA	chr14:73767862-73767968
chr14	73909025	73909811	+	MTC-int	LTR	ERVL-MaLR	chr14	73909284	73909286	+	ENSMUST00000228116.1,ENSMUSG00000115289.1	Gm49164	ENSMUSG00000115289.1	ENSMUST00000228116.1	lincRNA	chr14:73909285-73956061
chr14	74297473	74297556	-	B1_Mus2	SINE	Alu	chr14	74297544	74297546	+	ENSMUST00000228329.1,ENSMUSG00000115411.1	Gm6986	ENSMUSG00000115411.1	ENSMUST00000228329.1	processed_pseudogene	chr14:74297545-74298775
chr14	74355359	74355553	-	ORR1D2	LTR	ERVL-MaLR	chr14	74355526	74355528	+	ENSMUST00000226927.1,ENSMUSG00000115845.1	4933402J15Rik	ENSMUSG00000115845.1	ENSMUST00000226927.1	lincRNA	chr14:74355527-74369741
chr14	74926396	74926588	+	MIRb	SINE	MIR	chr14	74926444	74926446	+	ENSMUST00000227773.1,ENSMUSG00000115002.1	Gm10847	ENSMUSG00000115002.1	ENSMUST00000227773.1	antisense	chr14:74926445-74933133
chr14	74947832	74947866	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	74947865	74947867	-	ENSMUST00000088970.6,ENSMUSG00000068015.8	Lrch1	ENSMUSG00000068015.8	ENSMUST00000088970.6	protein_coding	chr14:74754675-74947866
chr14	75190256	75190374	+	Plat_L3	LINE	CR1	chr14	75190328	75190330	+	ENSMUST00000131802.1,ENSMUSG00000021998.16	Lcp1	ENSMUSG00000021998.16	ENSMUST00000131802.1	protein_coding	chr14:75190329-75230816
chr14	75261975	75262128	-	MLT1B	LTR	ERVL-MaLR	chr14	75262012	75262014	+	ENSMUST00000199232.1,ENSMUSG00000104689.1	Gm44482	ENSMUSG00000104689.1	ENSMUST00000199232.1	miRNA	chr14:75262013-75262115
chr14	75400287	75401128	+	RMER17A2	LTR	ERVK	chr14	75400445	75400447	-	ENSMUST00000227736.1,ENSMUSG00000115615.1	Gm49200	ENSMUSG00000115615.1	ENSMUST00000227736.1	lincRNA	chr14:75358982-75400446
chr14	75651428	75651529	-	U6	snRNA	snRNA	chr14	75651528	75651530	-	ENSMUST00000082460.1,ENSMUSG00000064394.1	Gm23622	ENSMUSG00000064394.1	ENSMUST00000082460.1	snRNA	chr14:75651423-75651529
chr14	75772136	75772531	-	MTA_Mm	LTR	ERVL-MaLR	chr14	75772327	75772329	-	ENSMUST00000227621.1,ENSMUSG00000022003.7	Slc25a30	ENSMUSG00000022003.7	ENSMUST00000227621.1	protein_coding	chr14:75768916-75772328
chr14	75840959	75841495	+	MT-int	LTR	ERVL-MaLR	chr14	75841485	75841487	+	ENSMUST00000228454.1,ENSMUSG00000115458.1	Gm48931	ENSMUSG00000115458.1	ENSMUST00000228454.1	processed_pseudogene	chr14:75841486-75841714
chr14	76415569	76415610	+	GC_rich	Low_complexity	Low_complexity	chr14	76415586	76415588	+	ENSMUST00000048371.14,ENSMUSG00000022010.19	Tsc22d1	ENSMUSG00000022010.19	ENSMUST00000048371.14	protein_coding	chr14:76415587-76507762
chr14	76488403	76488559	-	MER5B	DNA	hAT-Charlie	chr14	76488435	76488437	+	ENSMUST00000101618.8,ENSMUSG00000022010.19	Tsc22d1	ENSMUSG00000022010.19	ENSMUST00000101618.8	protein_coding	chr14:76488436-76507170
chr14	76526569	76526832	-	L1MB3	LINE	L1	chr14	76526591	76526593	+	ENSMUST00000228107.1,ENSMUSG00000115092.1	E130202H07Rik	ENSMUSG00000115092.1	ENSMUST00000228107.1	lincRNA	chr14:76526592-76530616
chr14	76526569	76526832	-	L1MB3	LINE	L1	chr14	76526615	76526617	+	ENSMUST00000227784.1,ENSMUSG00000115092.1	E130202H07Rik	ENSMUSG00000115092.1	ENSMUST00000227784.1	lincRNA	chr14:76526616-76530746
chr14	76832807	76832999	+	RMER4B	LTR	ERVK	chr14	76832820	76832822	+	ENSMUST00000227572.1,ENSMUSG00000115353.1	Gm48968	ENSMUSG00000115353.1	ENSMUST00000227572.1	lincRNA	chr14:76832821-76853299
chr14	76860793	76861805	+	MTC-int	LTR	ERVL-MaLR	chr14	76861570	76861572	+	ENSMUST00000227341.1,ENSMUSG00000115596.1	Gm48969	ENSMUSG00000115596.1	ENSMUST00000227341.1	lincRNA	chr14:76861571-76875175
chr14	76975901	76976352	-	MT-int	LTR	ERVL-MaLR	chr14	76976248	76976250	+	ENSMUST00000227717.1,ENSMUSG00000115303.1	Gm4291	ENSMUSG00000115303.1	ENSMUST00000227717.1	processed_pseudogene	chr14:76976249-76976887
chr14	77036588	77036666	+	GC_rich	Low_complexity	Low_complexity	chr14	77036640	77036642	-	ENSMUST00000062789.14,ENSMUSG00000044350.14	Lacc1	ENSMUSG00000044350.14	ENSMUST00000062789.14	protein_coding	chr14:77024200-77036641
chr14	77110848	77111074	-	MER57C2	LTR	ERV1	chr14	77110974	77110976	+	ENSMUST00000137110.1,ENSMUSG00000034795.14	Ccdc122	ENSMUSG00000034795.14	ENSMUST00000137110.1	protein_coding	chr14:77110975-77112257
chr14	77156720	77156776	+	(CG)n	Simple_repeat	Simple_repeat	chr14	77156762	77156764	+	ENSMUST00000022589.8,ENSMUSG00000022012.9	Enox1	ENSMUSG00000022012.9	ENSMUST00000022589.8	protein_coding	chr14:77156763-77721407
chr14	77501260	77501475	+	B3	SINE	B2	chr14	77501439	77501441	-	ENSMUST00000163416.1,ENSMUSG00000067973.11	Gm6994	ENSMUSG00000067973.11	ENSMUST00000163416.1	antisense	chr14:77480107-77501440
chr14	77530397	77530468	+	5S	rRNA	rRNA	chr14	77530397	77530399	+	ENSMUST00000122482.1,ENSMUSG00000084431.1	n-R5s48	ENSMUSG00000084431.1	ENSMUST00000122482.1	rRNA	chr14:77530398-77530507
chr14	77572609	77573534	+	ORR1A4-int	LTR	ERVL-MaLR	chr14	77572855	77572857	+	ENSMUST00000228845.1,ENSMUSG00000022012.9	Enox1	ENSMUSG00000022012.9	ENSMUST00000228845.1	protein_coding	chr14:77572856-77579274
chr14	77780702	77781128	+	RLTR10C	LTR	ERVK	chr14	77780973	77780975	+	ENSMUST00000227970.1,ENSMUSG00000115257.1	Gm30467	ENSMUSG00000115257.1	ENSMUST00000227970.1	lincRNA	chr14:77780974-77794221
chr14	77798933	77799041	-	MamSINE1	SINE	tRNA	chr14	77798967	77798969	-	ENSMUST00000228721.1,ENSMUSG00000075512.5	Gm1587	ENSMUSG00000075512.5	ENSMUST00000228721.1	lincRNA	chr14:77793945-77798968
chr14	78019259	78019733	+	ORR1C2	LTR	ERVL-MaLR	chr14	78019727	78019729	+	ENSMUST00000226503.1,ENSMUSG00000115517.1	Gm48954	ENSMUSG00000115517.1	ENSMUST00000226503.1	lincRNA	chr14:78019728-78048336
chr14	78246309	78246398	+	IMPB_01	Satellite	Satellite	chr14	78246310	78246312	-	ENSMUST00000116752.1,ENSMUSG00000080402.1	Gm23652	ENSMUSG00000080402.1	ENSMUST00000116752.1	miRNA	chr14:78246205-78246311
chr14	78732776	78732842	+	C-rich	Low_complexity	Low_complexity	chr14	78732775	78732777	-	ENSMUST00000226342.2,ENSMUSG00000034731.11	Dgkh	ENSMUSG00000034731.11	ENSMUST00000226342.2	protein_coding	chr14:78558750-78732776
chr14	79151197	79151696	-	MT2_Mm	LTR	ERVL	chr14	79151388	79151390	-	ENSMUST00000226853.1,ENSMUSG00000115167.1	Gm49015	ENSMUSG00000115167.1	ENSMUST00000226853.1	antisense	chr14:79146259-79151389
chr14	79199014	79199360	-	ORR1C2	LTR	ERVL-MaLR	chr14	79199189	79199191	-	ENSMUST00000228380.1,ENSMUSG00000115111.1	Gm4632	ENSMUSG00000115111.1	ENSMUST00000228380.1	antisense	chr14:79178894-79199190
chr14	79247163	79247528	-	MTD	LTR	ERVL-MaLR	chr14	79247366	79247368	-	ENSMUST00000161649.8,ENSMUSG00000071262.10	Zfp957	ENSMUSG00000071262.10	ENSMUST00000161649.8	protein_coding	chr14:79212355-79247367
chr14	79247163	79247528	-	MTD	LTR	ERVL-MaLR	chr14	79247368	79247370	-	ENSMUST00000162937.1,ENSMUSG00000071262.10	Zfp957	ENSMUSG00000071262.10	ENSMUST00000162937.1	protein_coding	chr14:79222929-79247369
chr14	79343172	79343211	+	CT-rich	Low_complexity	Low_complexity	chr14	79343196	79343198	-	ENSMUST00000171928.1,ENSMUSG00000022020.15	Naa16	ENSMUSG00000022020.15	ENSMUST00000171928.1	protein_coding	chr14:79334204-79343197
chr14	79472098	79472248	+	B1_Mm	SINE	Alu	chr14	79472236	79472238	-	ENSMUST00000228161.1,ENSMUSG00000022023.6	Wbp4	ENSMUSG00000022023.6	ENSMUST00000228161.1	protein_coding	chr14:79460950-79472237
chr14	79481486	79481579	+	GC_rich	Low_complexity	Low_complexity	chr14	79481519	79481521	-	ENSMUST00000022601.6,ENSMUSG00000022023.6	Wbp4	ENSMUSG00000022023.6	ENSMUST00000022601.6	protein_coding	chr14:79459937-79481520
chr14	79562163	79562311	+	B1_Mus1	SINE	Alu	chr14	79562291	79562293	-	ENSMUST00000176930.2,ENSMUSG00000093684.2	Gm27857	ENSMUSG00000093684.2	ENSMUST00000176930.2	miRNA	chr14:79562167-79562292
chr14	79624466	79624658	-	B2_Mm1a	SINE	B2	chr14	79624638	79624640	+	ENSMUST00000226320.1,ENSMUSG00000022024.10	Sugt1	ENSMUSG00000022024.10	ENSMUST00000226320.1	protein_coding	chr14:79624639-79628977
chr14	79702410	79702512	+	Tigger19a	DNA	TcMar-Tigger	chr14	79702409	79702411	-	ENSMUST00000226962.1,ENSMUSG00000115740.1	Gm49042	ENSMUSG00000115740.1	ENSMUST00000226962.1	lincRNA	chr14:79695037-79702410
chr14	79836712	79836840	-	L2c	LINE	L2	chr14	79836711	79836713	+	ENSMUST00000180427.1,ENSMUSG00000097927.2	Gm6999	ENSMUSG00000097927.2	ENSMUST00000180427.1	lincRNA	chr14:79836712-79958726
chr14	80927116	80931349	-	L1Md_F3	LINE	L1	chr14	80930736	80930738	+	ENSMUST00000226419.1,ENSMUSG00000115716.1	Gm49044	ENSMUSG00000115716.1	ENSMUST00000226419.1	processed_pseudogene	chr14:80930737-80931037
chr14	82887479	82893874	-	L1Md_T	LINE	L1	chr14	82892836	82892838	+	ENSMUST00000228219.1,ENSMUSG00000115031.1	Gm49051	ENSMUSG00000115031.1	ENSMUST00000228219.1	processed_pseudogene	chr14:82892837-82893106
chr14	84075237	84075499	-	RLTR10B	LTR	ERVK	chr14	84075289	84075291	-	ENSMUST00000228897.1,ENSMUSG00000115043.1	Gm32455	ENSMUSG00000115043.1	ENSMUST00000228897.1	lincRNA	chr14:84046431-84075290
chr14	84385952	84392237	-	L1Md_A	LINE	L1	chr14	84391309	84391311	+	ENSMUST00000227972.1,ENSMUSG00000115227.1	Gm49057	ENSMUSG00000115227.1	ENSMUST00000227972.1	processed_pseudogene	chr14:84391310-84391579
chr14	86172591	86172964	+	MLT1C	LTR	ERVL-MaLR	chr14	86172922	86172924	+	ENSMUST00000227116.1,ENSMUSG00000115217.1	Gm32729	ENSMUSG00000115217.1	ENSMUST00000227116.1	lincRNA	chr14:86172923-86179581
chr14	86245101	86246053	-	RMER17B	LTR	ERVK	chr14	86245969	86245971	+	ENSMUST00000227144.1,ENSMUSG00000115271.1	4930529K09Rik	ENSMUSG00000115271.1	ENSMUST00000227144.1	lincRNA	chr14:86245970-86262042
chr14	86245101	86246053	-	RMER17B	LTR	ERVK	chr14	86246002	86246004	+	ENSMUST00000228468.1,ENSMUSG00000115271.1	4930529K09Rik	ENSMUSG00000115271.1	ENSMUST00000228468.1	lincRNA	chr14:86246003-86283688
chr14	86299671	86299824	-	MIRb	SINE	MIR	chr14	86299733	86299735	-	ENSMUST00000228609.1,ENSMUSG00000115777.1	Gm32815	ENSMUSG00000115777.1	ENSMUST00000228609.1	processed_transcript	chr14:86264144-86299734
chr14	86311288	86311378	-	U6	snRNA	snRNA	chr14	86311377	86311379	-	ENSMUST00000082473.1,ENSMUSG00000064407.1	Gm23926	ENSMUSG00000064407.1	ENSMUST00000082473.1	snRNA	chr14:86311289-86311378
chr14	86408521	86408660	+	U1	snRNA	snRNA	chr14	86408521	86408523	+	ENSMUST00000157187.1,ENSMUSG00000087812.1	Gm25115	ENSMUSG00000087812.1	ENSMUST00000157187.1	snRNA	chr14:86408522-86408661
chr14	86789827	86789991	+	L2a	LINE	L2	chr14	86789888	86789890	-	ENSMUST00000227638.1,ENSMUSG00000022021.14	Diaph3	ENSMUSG00000022021.14	ENSMUST00000227638.1	protein_coding	chr14:86656172-86789889
chr14	86920684	86920733	+	(CA)n	Simple_repeat	Simple_repeat	chr14	86920710	86920712	-	ENSMUST00000104755.2,ENSMUSG00000077948.2	Gm23438	ENSMUSG00000077948.2	ENSMUST00000104755.2	miRNA	chr14:86920621-86920711
chr14	88126997	88127082	+	5S	rRNA	rRNA	chr14	88126997	88126999	+	ENSMUST00000158495.1,ENSMUSG00000089120.1	Gm26405	ENSMUSG00000089120.1	ENSMUST00000158495.1	rRNA	chr14:88126998-88127097
chr14	88415551	88415681	-	RodERV21-int	LTR	ERV1	chr14	88415579	88415581	-	ENSMUST00000227261.1,ENSMUSG00000115114.1	Gm48930	ENSMUSG00000115114.1	ENSMUST00000227261.1	transcribed_processed_pseudogene	chr14:88415431-88415580
chr14	88415751	88417702	-	RodERV21-int	LTR	ERV1	chr14	88416024	88416026	-	ENSMUST00000226327.1,ENSMUSG00000115114.1	Gm48930	ENSMUSG00000115114.1	ENSMUST00000226327.1	transcribed_processed_pseudogene	chr14:88415390-88416025
chr14	88635585	88636316	-	L1_Mur3	LINE	L1	chr14	88636032	88636034	+	ENSMUST00000227074.1,ENSMUSG00000115623.1	Gm41225	ENSMUSG00000115623.1	ENSMUST00000227074.1	lincRNA	chr14:88636033-88763761
chr14	91647318	91647887	+	RLTR6_Mm	LTR	ERV1	chr14	91647838	91647840	-	ENSMUST00000227213.1,ENSMUSG00000115368.1	Gm48942	ENSMUSG00000115368.1	ENSMUST00000227213.1	lincRNA	chr14:91638499-91647839
chr14	91671091	91677540	-	L1Md_T	LINE	L1	chr14	91676447	91676449	+	ENSMUST00000227750.1,ENSMUSG00000115171.1	Gm48943	ENSMUSG00000115171.1	ENSMUST00000227750.1	unprocessed_pseudogene	chr14:91676448-91730881
chr14	92228251	92234491	-	L1Md_T	LINE	L1	chr14	92233504	92233506	+	ENSMUST00000228682.1,ENSMUSG00000115308.1	Gm48944	ENSMUSG00000115308.1	ENSMUST00000228682.1	processed_pseudogene	chr14:92233505-92233774
chr14	92866280	92866603	-	Lx6	LINE	L1	chr14	92866565	92866567	-	ENSMUST00000226822.1,ENSMUSG00000115720.1	4930433E05Rik	ENSMUSG00000115720.1	ENSMUST00000226822.1	lincRNA	chr14:92861256-92866566
chr14	93138028	93138189	-	U1	snRNA	snRNA	chr14	93138188	93138190	-	ENSMUST00000083080.1,ENSMUSG00000065014.1	Gm23509	ENSMUSG00000065014.1	ENSMUST00000083080.1	snRNA	chr14:93138030-93138189
chr14	93311121	93311893	-	L1Md_F2	LINE	L1	chr14	93311136	93311138	+	ENSMUST00000228387.1,ENSMUSG00000115447.1	Gm48964	ENSMUSG00000115447.1	ENSMUST00000228387.1	TEC	chr14:93311137-93313156
chr14	93801155	93801705	-	L1Md_F2	LINE	L1	chr14	93801172	93801174	-	ENSMUST00000227609.1,ENSMUSG00000115471.1	C230086J09Rik	ENSMUSG00000115471.1	ENSMUST00000227609.1	TEC	chr14:93797141-93801173
chr14	93890643	93890679	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr14	93890668	93890670	-	ENSMUST00000195826.5,ENSMUSG00000055421.8	Pcdh9	ENSMUSG00000055421.8	ENSMUST00000195826.5	protein_coding	chr14:93013410-93890669
chr14	93890643	93890679	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr14	93890668	93890670	-	ENSMUST00000193901.5,ENSMUSG00000055421.8	Pcdh9	ENSMUSG00000055421.8	ENSMUST00000193901.5	protein_coding	chr14:93013702-93890669
chr14	93890643	93890679	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr14	93890678	93890680	-	ENSMUST00000194056.1,ENSMUSG00000055421.8	Pcdh9	ENSMUSG00000055421.8	ENSMUST00000194056.1	protein_coding	chr14:93886113-93890679
chr14	93981942	93982512	+	L1_Mus3	LINE	L1	chr14	93982141	93982143	+	ENSMUST00000227233.1,ENSMUSG00000115797.1	Gm48981	ENSMUSG00000115797.1	ENSMUST00000227233.1	processed_pseudogene	chr14:93982142-93982246
chr14	94448311	94448653	-	ORR1D1	LTR	ERVL-MaLR	chr14	94448350	94448352	-	ENSMUST00000157421.1,ENSMUSG00000088046.1	Gm23324	ENSMUSG00000088046.1	ENSMUST00000157421.1	snoRNA	chr14:94448221-94448351
chr14	94735304	94736061	+	RMER17B	LTR	ERVK	chr14	94735464	94735466	-	ENSMUST00000227716.1,ENSMUSG00000115822.1	Gm33450	ENSMUSG00000115822.1	ENSMUST00000227716.1	lincRNA	chr14:94715695-94735465
chr14	96444954	96445070	+	U5	snRNA	snRNA	chr14	96444954	96444956	+	ENSMUST00000083108.1,ENSMUSG00000065042.1	Gm24043	ENSMUSG00000065042.1	ENSMUST00000083108.1	snRNA	chr14:96444955-96445070
chr14	97048649	97050300	+	Lx4A	LINE	L1	chr14	97049584	97049586	-	ENSMUST00000185000.1,ENSMUSG00000098772.1	Gm27441	ENSMUSG00000098772.1	ENSMUST00000185000.1	miRNA	chr14:97049481-97049585
chr14	97967830	97967991	-	U1	snRNA	snRNA	chr14	97967990	97967992	-	ENSMUST00000158924.1,ENSMUSG00000089549.1	Gm25831	ENSMUSG00000089549.1	ENSMUST00000158924.1	snRNA	chr14:97967829-97967991
chr14	98260817	98260916	+	L1_Mur2	LINE	L1	chr14	98260824	98260826	-	ENSMUST00000158800.1,ENSMUSG00000089425.1	Gm26006	ENSMUSG00000089425.1	ENSMUST00000158800.1	snoRNA	chr14:98260745-98260825
chr14	98624189	98624296	+	U6	snRNA	snRNA	chr14	98624189	98624191	+	ENSMUST00000180098.1,ENSMUSG00000096444.1	Gm26139	ENSMUSG00000096444.1	ENSMUST00000180098.1	snRNA	chr14:98624190-98624296
chr14	99046122	99046238	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr14	99046133	99046135	-	ENSMUST00000228445.1,ENSMUSG00000033186.9	Mzt1	ENSMUSG00000033186.9	ENSMUST00000228445.1	protein_coding	chr14:99035834-99046134
chr14	99046122	99046238	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr14	99046221	99046223	+	ENSMUST00000226823.1,ENSMUSG00000022070.7	Bora	ENSMUSG00000022070.7	ENSMUST00000226823.1	protein_coding	chr14:99046222-99047912
chr14	99111644	99111747	+	MIRb	SINE	MIR	chr14	99111676	99111678	+	ENSMUST00000226897.1,ENSMUSG00000115071.1	Gm49026	ENSMUSG00000115071.1	ENSMUST00000226897.1	TEC	chr14:99111677-99112814
chr14	99352055	99352169	-	U2	snRNA	snRNA	chr14	99352168	99352170	-	ENSMUST00000122751.1,ENSMUSG00000084700.1	Gm22984	ENSMUSG00000084700.1	ENSMUST00000122751.1	snRNA	chr14:99352048-99352169
chr14	99360668	99360827	-	U1	snRNA	snRNA	chr14	99360826	99360828	-	ENSMUST00000082650.1,ENSMUSG00000064584.1	Gm25130	ENSMUSG00000064584.1	ENSMUST00000082650.1	snRNA	chr14:99360672-99360827
chr14	99619859	99620293	-	RLTR11A2	LTR	ERVK	chr14	99620015	99620017	-	ENSMUST00000226602.1,ENSMUSG00000115550.1	Gm49225	ENSMUSG00000115550.1	ENSMUST00000226602.1	lincRNA	chr14:99617527-99620016
chr14	100213103	100213464	+	MTEa	LTR	ERVL-MaLR	chr14	100213141	100213143	+	ENSMUST00000140320.8,ENSMUSG00000054391.12	4930517O19Rik	ENSMUSG00000054391.12	ENSMUST00000140320.8	antisense	chr14:100213142-100245339
chr14	100213103	100213464	+	MTEa	LTR	ERVL-MaLR	chr14	100213188	100213190	+	ENSMUST00000145018.1,ENSMUSG00000054391.12	4930517O19Rik	ENSMUSG00000054391.12	ENSMUST00000145018.1	antisense	chr14:100213189-100244821
chr14	100649125	100655909	-	L1Md_A	LINE	L1	chr14	100655760	100655762	+	ENSMUST00000227628.1,ENSMUSG00000115105.1	Gm49238	ENSMUSG00000115105.1	ENSMUST00000227628.1	TEC	chr14:100655761-100662533
chr14	100760167	100760268	-	U6	snRNA	snRNA	chr14	100760267	100760269	-	ENSMUST00000157535.1,ENSMUSG00000088160.1	Gm23538	ENSMUSG00000088160.1	ENSMUST00000157535.1	snRNA	chr14:100760168-100760268
chr14	101653983	101654030	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	101653993	101653995	+	ENSMUST00000002289.7,ENSMUSG00000022111.9	Uchl3	ENSMUSG00000022111.9	ENSMUST00000002289.7	protein_coding	chr14:101653994-101696125
chr14	101653983	101654030	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	101654015	101654017	+	ENSMUST00000226521.1,ENSMUSG00000022111.9	Uchl3	ENSMUSG00000022111.9	ENSMUST00000226521.1	protein_coding	chr14:101654016-101654518
chr14	101653983	101654030	+	(CGG)n	Simple_repeat	Simple_repeat	chr14	101654024	101654026	+	ENSMUST00000228773.1,ENSMUSG00000022111.9	Uchl3	ENSMUSG00000022111.9	ENSMUST00000228773.1	protein_coding	chr14:101654025-101696125
chr14	101918955	101919078	-	B1_Mus1	SINE	Alu	chr14	101919076	101919078	+	ENSMUST00000159154.1,ENSMUSG00000033060.15	Lmo7	ENSMUSG00000033060.15	ENSMUST00000159154.1	protein_coding	chr14:101919077-101930760
chr14	102436234	102437286	+	Lx3A	LINE	L1	chr14	102437022	102437024	+	ENSMUST00000228104.1,ENSMUSG00000115696.1	Gm49292	ENSMUSG00000115696.1	ENSMUST00000228104.1	lincRNA	chr14:102437023-102464994
chr14	102806096	102806178	+	5S	rRNA	rRNA	chr14	102806098	102806100	+	ENSMUST00000158346.1,ENSMUSG00000088971.1	Gm23764	ENSMUSG00000088971.1	ENSMUST00000158346.1	rRNA	chr14:102806099-102806146
chr14	102834747	102834802	+	MIRc	SINE	MIR	chr14	102834757	102834759	-	ENSMUST00000227348.1,ENSMUSG00000115816.1	Gm34589	ENSMUSG00000115816.1	ENSMUST00000227348.1	processed_transcript	chr14:102818164-102834758
chr14	103463885	103464008	-	L3b	LINE	CR1	chr14	103463918	103463920	+	ENSMUST00000227693.1,ENSMUSG00000115762.1	Gm34907	ENSMUSG00000115762.1	ENSMUST00000227693.1	lincRNA	chr14:103463919-103512619
chr14	103463885	103464008	-	L3b	LINE	CR1	chr14	103464006	103464008	+	ENSMUST00000228094.1,ENSMUSG00000115762.1	Gm34907	ENSMUSG00000115762.1	ENSMUST00000228094.1	lincRNA	chr14:103464007-103470153
chr14	103650501	103650574	+	(CCG)n	Simple_repeat	Simple_repeat	chr14	103650556	103650558	-	ENSMUST00000175451.1,ENSMUSG00000093192.1	Gm22877	ENSMUSG00000093192.1	ENSMUST00000175451.1	miRNA	chr14:103650453-103650557
chr14	103650622	103650651	+	GC_rich	Low_complexity	Low_complexity	chr14	103650645	103650647	+	ENSMUST00000160805.7,ENSMUSG00000055717.13	Slain1	ENSMUSG00000055717.13	ENSMUST00000160805.7	protein_coding	chr14:103650646-103704310
chr14	103699341	103699713	+	ORR1C2	LTR	ERVL-MaLR	chr14	103699441	103699443	-	ENSMUST00000160117.1,ENSMUSG00000089707.1	Slain1os	ENSMUSG00000089707.1	ENSMUST00000160117.1	antisense	chr14:103692983-103699442
chr14	103998013	103998410	+	Lx9	LINE	L1	chr14	103998283	103998285	-	ENSMUST00000227414.1,ENSMUSG00000115727.1	4930432J09Rik	ENSMUSG00000115727.1	ENSMUST00000227414.1	lincRNA	chr14:103979636-103998284
chr14	104591094	104591195	+	U6	snRNA	snRNA	chr14	104591093	104591095	+	ENSMUST00000104353.1,ENSMUSG00000077541.1	Gm22021	ENSMUSG00000077541.1	ENSMUST00000104353.1	snRNA	chr14:104591094-104591200
chr14	105114453	105114585	-	L1MEg	LINE	L1	chr14	105114460	105114462	-	ENSMUST00000164319.1,ENSMUSG00000091509.7	Gm17066	ENSMUSG00000091509.7	ENSMUST00000164319.1	processed_transcript	chr14:105109409-105114461
chr14	105176855	105176921	+	C-rich	Low_complexity	Low_complexity	chr14	105176859	105176861	-	ENSMUST00000163545.7,ENSMUSG00000022119.15	Rbm26	ENSMUSG00000022119.15	ENSMUST00000163545.7	protein_coding	chr14:105114965-105176860
chr14	105250009	105250116	+	U6	snRNA	snRNA	chr14	105250009	105250011	+	ENSMUST00000177655.1,ENSMUSG00000094275.1	Gm22290	ENSMUSG00000094275.1	ENSMUST00000177655.1	snRNA	chr14:105250010-105250116
chr14	105276878	105276986	-	U6	snRNA	snRNA	chr14	105276985	105276987	-	ENSMUST00000082781.1,ENSMUSG00000064715.1	Gm24207	ENSMUSG00000064715.1	ENSMUST00000082781.1	snRNA	chr14:105276879-105276986
chr14	105294420	105294656	-	B4A	SINE	B4	chr14	105294545	105294547	+	ENSMUST00000149358.1,ENSMUSG00000053253.16	Ndfip2	ENSMUSG00000053253.16	ENSMUST00000149358.1	protein_coding	chr14:105294546-105308869
chr14	105623733	105623875	-	ORR1D1	LTR	ERVL-MaLR	chr14	105623769	105623771	-	ENSMUST00000184405.1,ENSMUSG00000098780.1	Mir6390	ENSMUSG00000098780.1	ENSMUST00000184405.1	miRNA	chr14:105623642-105623770
chr14	105641494	105642253	+	RMER1A	Other	Other	chr14	105642065	105642067	-	ENSMUST00000211114.1,ENSMUSG00000110080.1	Gm6145	ENSMUSG00000110080.1	ENSMUST00000211114.1	processed_transcript	chr14:105623109-105642066
chr14	105641494	105642253	+	RMER1A	Other	Other	chr14	105642059	105642061	-	ENSMUST00000210902.1,ENSMUSG00000110080.1	Gm6145	ENSMUSG00000110080.1	ENSMUST00000210902.1	processed_transcript	chr14:105623178-105642060
chr14	105641494	105642253	+	RMER1A	Other	Other	chr14	105642067	105642069	-	ENSMUST00000210557.1,ENSMUSG00000110080.1	Gm6145	ENSMUSG00000110080.1	ENSMUST00000210557.1	processed_transcript	chr14:105623178-105642068
chr14	106261150	106261253	-	U4	snRNA	snRNA	chr14	106261252	106261254	-	ENSMUST00000083259.1,ENSMUSG00000065193.1	Gm23459	ENSMUSG00000065193.1	ENSMUST00000083259.1	snRNA	chr14:106261123-106261253
chr14	106486422	106486900	+	Lx5b	LINE	L1	chr14	106486519	106486521	-	ENSMUST00000186311.1,ENSMUSG00000099794.1	1700128A07Rik	ENSMUSG00000099794.1	ENSMUST00000186311.1	lincRNA	chr14:106417187-106486520
chr14	106486422	106486900	+	Lx5b	LINE	L1	chr14	106486491	106486493	-	ENSMUST00000186643.1,ENSMUSG00000099794.1	1700128A07Rik	ENSMUSG00000099794.1	ENSMUST00000186643.1	lincRNA	chr14:106443211-106486492
chr14	106517446	106518262	+	RMER19B	LTR	ERVK	chr14	106517494	106517496	-	ENSMUST00000158672.1,ENSMUSG00000089297.1	Gm24634	ENSMUSG00000089297.1	ENSMUST00000158672.1	snoRNA	chr14:106517389-106517495
chr14	107873229	107876890	+	L1Md_T	LINE	L1	chr14	107875401	107875403	+	ENSMUST00000227378.1,ENSMUSG00000115661.1	Gm48976	ENSMUSG00000115661.1	ENSMUST00000227378.1	processed_pseudogene	chr14:107875402-107876753
chr14	108010667	108012455	+	L1_Mus4	LINE	L1	chr14	108011383	108011385	-	ENSMUST00000228128.1,ENSMUSG00000115562.1	Gm48977	ENSMUSG00000115562.1	ENSMUST00000228128.1	lincRNA	chr14:107997070-108011384
chr14	108379340	108379841	-	Lx8b	LINE	L1	chr14	108379563	108379565	+	ENSMUST00000175093.1,ENSMUSG00000092834.1	Gm24818	ENSMUSG00000092834.1	ENSMUST00000175093.1	miRNA	chr14:108379564-108379724
chr14	108914118	108914192	+	G-rich	Low_complexity	Low_complexity	chr14	108914157	108914159	-	ENSMUST00000100322.3,ENSMUSG00000075478.3	Slitrk1	ENSMUSG00000075478.3	ENSMUST00000100322.3	protein_coding	chr14:108908800-108914158
chr14	109951356	109951487	-	RLTR17B_Mm	LTR	ERVK	chr14	109951398	109951400	+	ENSMUST00000175387.1,ENSMUSG00000093128.1	Gm24369	ENSMUSG00000093128.1	ENSMUST00000175387.1	miRNA	chr14:109951399-109951494
chr14	110161834	110161924	+	5S	rRNA	rRNA	chr14	110161834	110161836	+	ENSMUST00000083168.1,ENSMUSG00000065102.1	n-R5s50	ENSMUSG00000065102.1	ENSMUST00000083168.1	rRNA	chr14:110161835-110161945
chr14	110428156	110428263	-	U6	snRNA	snRNA	chr14	110428262	110428264	-	ENSMUST00000083055.1,ENSMUSG00000094312.1	Gm23242	ENSMUSG00000094312.1	ENSMUST00000083055.1	snRNA	chr14:110428157-110428263
chr14	110597615	110597722	-	U6	snRNA	snRNA	chr14	110597721	110597723	-	ENSMUST00000178423.1,ENSMUSG00000095059.1	Gm25670	ENSMUSG00000095059.1	ENSMUST00000178423.1	snRNA	chr14:110597616-110597722
chr14	110597722	110598667	-	L1Md_T	LINE	L1	chr14	110597721	110597723	-	ENSMUST00000178423.1,ENSMUSG00000095059.1	Gm25670	ENSMUSG00000095059.1	ENSMUST00000178423.1	snRNA	chr14:110597616-110597722
chr14	110732035	110732129	+	U6	snRNA	snRNA	chr14	110732035	110732037	+	ENSMUST00000122492.1,ENSMUSG00000084441.1	Gm26255	ENSMUSG00000084441.1	ENSMUST00000122492.1	snRNA	chr14:110732036-110732138
chr14	111282033	111282129	+	RLTR17B_Mm	LTR	ERVK	chr14	111282045	111282047	+	ENSMUST00000175621.1,ENSMUSG00000093362.1	Gm22802	ENSMUSG00000093362.1	ENSMUST00000175621.1	miRNA	chr14:111282046-111282134
chr14	111675017	111675114	+	T-rich	Low_complexity	Low_complexity	chr14	111675096	111675098	+	ENSMUST00000042767.8,ENSMUSG00000033214.10	Slitrk5	ENSMUSG00000033214.10	ENSMUST00000042767.8	protein_coding	chr14:111675097-111683141
chr14	112031238	112031261	+	(A)n	Simple_repeat	Simple_repeat	chr14	112031237	112031239	-	ENSMUST00000227711.1,ENSMUSG00000115558.1	Gm49000	ENSMUSG00000115558.1	ENSMUST00000227711.1	TEC	chr14:112029642-112031238
chr14	113901180	113902031	-	Lx	LINE	L1	chr14	113902026	113902028	+	ENSMUST00000226804.1,ENSMUSG00000115269.1	Gm5209	ENSMUSG00000115269.1	ENSMUST00000226804.1	processed_pseudogene	chr14:113902027-113902746
chr14	114876501	114876604	-	MIRc	SINE	MIR	chr14	114876509	114876511	-	ENSMUST00000226159.1,ENSMUSG00000115309.1	Gm49010	ENSMUSG00000115309.1	ENSMUST00000226159.1	lincRNA	chr14:114874944-114876510
chr14	117953804	117953967	-	RCHARR1	DNA	hAT-Charlie	chr14	117953846	117953848	-	ENSMUST00000183564.1,ENSMUSG00000098648.1	Mir6239	ENSMUSG00000098648.1	ENSMUST00000183564.1	miRNA	chr14:117953743-117953847
chr14	118209370	118209396	+	AT_rich	Low_complexity	Low_complexity	chr14	118209377	118209379	+	ENSMUST00000227898.1,ENSMUSG00000115774.1	4933431J24Rik	ENSMUSG00000115774.1	ENSMUST00000227898.1	lincRNA	chr14:118209378-118213145
chr14	118253118	118253788	-	L1MB8	LINE	L1	chr14	118253715	118253717	+	ENSMUST00000169262.1,ENSMUSG00000090534.1	Gm4675	ENSMUSG00000090534.1	ENSMUST00000169262.1	lincRNA	chr14:118253716-118254258
chr14	118266400	118267092	+	Lx9	LINE	L1	chr14	118266959	118266961	+	ENSMUST00000171107.2,ENSMUSG00000092109.2	Gm9376	ENSMUSG00000092109.2	ENSMUST00000171107.2	protein_coding	chr14:118266960-118267688
chr14	118365813	118366103	+	RLTR51A_Mm	LTR	ERVK?	chr14	118365877	118365879	+	ENSMUST00000186060.1,ENSMUSG00000099911.1	1700044C05Rik	ENSMUSG00000099911.1	ENSMUST00000186060.1	lincRNA	chr14:118365878-118398170
chr14	118676865	118677395	-	L1MC1	LINE	L1	chr14	118676930	118676932	-	ENSMUST00000226703.1,ENSMUSG00000032849.14	Abcc4	ENSMUSG00000032849.14	ENSMUST00000226703.1	protein_coding	chr14:118483811-118676931
chr14	118900121	118900246	-	B1_Mur3	SINE	Alu	chr14	118900201	118900203	-	ENSMUST00000228540.1,ENSMUSG00000042156.16	Dzip1	ENSMUSG00000042156.16	ENSMUST00000228540.1	protein_coding	chr14:118895689-118900202
chr14	118916652	118916845	+	B2_Mm2	SINE	B2	chr14	118916719	118916721	-	ENSMUST00000228142.1,ENSMUSG00000042156.16	Dzip1	ENSMUSG00000042156.16	ENSMUST00000228142.1	protein_coding	chr14:118913117-118916720
chr14	118983482	118983821	-	MTC	LTR	ERVL-MaLR	chr14	118983759	118983761	-	ENSMUST00000227218.1,ENSMUSG00000115220.1	AC154760.1	ENSMUSG00000115220.1	ENSMUST00000227218.1	lincRNA	chr14:118982994-118983760
chr14	119006696	119006836	+	(CGTG)n	Simple_repeat	Simple_repeat	chr14	119006716	119006718	-	ENSMUST00000131424.7,ENSMUSG00000042104.18	Uggt2	ENSMUSG00000042104.18	ENSMUST00000131424.7	protein_coding	chr14:118986418-119006717
chr14	119007424	119007620	+	ORR1D2	LTR	ERVL-MaLR	chr14	119007464	119007466	-	ENSMUST00000148022.7,ENSMUSG00000042104.18	Uggt2	ENSMUSG00000042104.18	ENSMUST00000148022.7	protein_coding	chr14:118985039-119007465
chr14	119007424	119007620	+	ORR1D2	LTR	ERVL-MaLR	chr14	119007555	119007557	-	ENSMUST00000154130.1,ENSMUSG00000042104.18	Uggt2	ENSMUSG00000042104.18	ENSMUST00000154130.1	protein_coding	chr14:119001890-119007556
chr14	119748877	119749532	-	RMER19B2	LTR	ERVK	chr14	119749224	119749226	+	ENSMUST00000188582.1,ENSMUSG00000100274.1	1700006F04Rik	ENSMUSG00000100274.1	ENSMUST00000188582.1	sense_intronic	chr14:119749225-119751564
chr14	120306223	120306626	+	MTD	LTR	ERVL-MaLR	chr14	120306451	120306453	+	ENSMUST00000227594.1,ENSMUSG00000022139.17	Mbnl2	ENSMUSG00000022139.17	ENSMUST00000227594.1	protein_coding	chr14:120306452-120429626
chr14	120306223	120306626	+	MTD	LTR	ERVL-MaLR	chr14	120306455	120306457	+	ENSMUST00000227644.1,ENSMUSG00000022139.17	Mbnl2	ENSMUSG00000022139.17	ENSMUST00000227644.1	protein_coding	chr14:120306456-120379260
chr14	120743735	120749883	-	L1Md_A	LINE	L1	chr14	120749184	120749186	+	ENSMUST00000138893.3,ENSMUSG00000090284.2	Gm17613	ENSMUSG00000090284.2	ENSMUST00000138893.3	lincRNA	chr14:120749185-120750062
chr14	120798435	120798953	+	RMER17A2	LTR	ERVK	chr14	120798852	120798854	+	ENSMUST00000122527.1,ENSMUSG00000084476.1	Gm25781	ENSMUSG00000084476.1	ENSMUST00000122527.1	snRNA	chr14:120798853-120798936
chr14	121248704	121248730	+	(T)n	Simple_repeat	Simple_repeat	chr14	121248705	121248707	+	ENSMUST00000130256.2,ENSMUSG00000085133.2	B930095G15Rik	ENSMUSG00000085133.2	ENSMUST00000130256.2	sense_intronic	chr14:121248706-121253971
chr14	121385949	121386059	-	Tigger20a	DNA	TcMar-Tigger	chr14	121385955	121385957	-	ENSMUST00000228299.1,ENSMUSG00000115666.1	Gm49031	ENSMUSG00000115666.1	ENSMUST00000228299.1	processed_pseudogene	chr14:121385505-121385956
chr14	121518972	121519366	-	IAPLTR2a2_Mm	LTR	ERVK	chr14	121519129	121519131	-	ENSMUST00000227974.1,ENSMUSG00000115390.1	Gm49035	ENSMUSG00000115390.1	ENSMUST00000227974.1	lincRNA	chr14:121507013-121519130
chr14	121518972	121519366	-	IAPLTR2a2_Mm	LTR	ERVK	chr14	121519111	121519113	-	ENSMUST00000226732.1,ENSMUSG00000115390.1	Gm49035	ENSMUSG00000115390.1	ENSMUST00000226732.1	lincRNA	chr14:121510503-121519112
chr14	121523085	121523555	+	L1M4	LINE	L1	chr14	121523543	121523545	+	ENSMUST00000226518.1,ENSMUSG00000115408.1	Gm4529	ENSMUSG00000115408.1	ENSMUST00000226518.1	processed_pseudogene	chr14:121523544-121523748
chr14	121586559	121586748	-	MIRb	SINE	MIR	chr14	121586745	121586747	-	ENSMUST00000211907.1,ENSMUSG00000025558.17	Dock9	ENSMUSG00000025558.17	ENSMUST00000211907.1	protein_coding	chr14:121583486-121586746
chr14	121944153	121946429	-	Lx	LINE	L1	chr14	121946313	121946315	+	ENSMUST00000227936.1,ENSMUSG00000041765.6	Ubac2	ENSMUSG00000041765.6	ENSMUST00000227936.1	protein_coding	chr14:121946314-122008907
chr14	122091041	122091511	-	MT2_Mm	LTR	ERVL	chr14	122091225	122091227	-	ENSMUST00000226452.1,ENSMUSG00000115121.1	Gm49236	ENSMUSG00000115121.1	ENSMUST00000226452.1	lincRNA	chr14:122064351-122091226
chr14	122091041	122091511	-	MT2_Mm	LTR	ERVL	chr14	122091225	122091227	-	ENSMUST00000226723.1,ENSMUSG00000115121.1	Gm49236	ENSMUSG00000115121.1	ENSMUST00000226723.1	lincRNA	chr14:122077323-122091226
chr14	122181598	122181717	+	G-rich	Low_complexity	Low_complexity	chr14	122181703	122181705	+	ENSMUST00000026625.6,ENSMUSG00000025545.10	Clybl	ENSMUSG00000025545.10	ENSMUST00000026625.6	protein_coding	chr14:122181704-122402234
chr14	122388053	122388160	-	U6	snRNA	snRNA	chr14	122388159	122388161	-	ENSMUST00000175481.1,ENSMUSG00000095311.1	Gm25464	ENSMUSG00000095311.1	ENSMUST00000175481.1	snRNA	chr14:122388054-122388160
chr14	122475409	122475466	+	CT-rich	Low_complexity	Low_complexity	chr14	122475434	122475436	+	ENSMUST00000075888.5,ENSMUSG00000061524.8	Zic2	ENSMUSG00000061524.8	ENSMUST00000075888.5	protein_coding	chr14:122475435-122479852
chr14	122954634	122954930	+	MTD	LTR	ERVL-MaLR	chr14	122954914	122954916	-	ENSMUST00000227430.1,ENSMUSG00000041594.18	Tmtc4	ENSMUSG00000041594.18	ENSMUST00000227430.1	protein_coding	chr14:122943249-122954915
chr14	122983262	122983354	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	122983282	122983284	-	ENSMUST00000037726.13,ENSMUSG00000041594.18	Tmtc4	ENSMUSG00000041594.18	ENSMUST00000037726.13	protein_coding	chr14:122918971-122983283
chr14	122983262	122983354	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr14	122983274	122983276	-	ENSMUST00000128969.1,ENSMUSG00000041594.18	Tmtc4	ENSMUSG00000041594.18	ENSMUST00000128969.1	protein_coding	chr14:122944747-122983275
chr14	123043074	123043514	+	MLT1C	LTR	ERVL-MaLR	chr14	123043281	123043283	+	ENSMUST00000228377.1,ENSMUSG00000115016.1	AC158982.1	ENSMUSG00000115016.1	ENSMUST00000228377.1	processed_transcript	chr14:123043282-123265002
chr14	123169108	123169449	+	MTC	LTR	ERVL-MaLR	chr14	123169181	123169183	+	ENSMUST00000227709.1,ENSMUSG00000115016.1	AC158982.1	ENSMUSG00000115016.1	ENSMUST00000227709.1	processed_transcript	chr14:123169182-123176019
chr14	123169108	123169449	+	MTC	LTR	ERVL-MaLR	chr14	123169212	123169214	+	ENSMUST00000226966.1,ENSMUSG00000115016.1	AC158982.1	ENSMUSG00000115016.1	ENSMUST00000226966.1	processed_transcript	chr14:123169213-123172264
chr14	123169108	123169449	+	MTC	LTR	ERVL-MaLR	chr14	123169261	123169263	+	ENSMUST00000227339.1,ENSMUSG00000115016.1	AC158982.1	ENSMUSG00000115016.1	ENSMUST00000227339.1	processed_transcript	chr14:123169262-123176075
chr14	123169108	123169449	+	MTC	LTR	ERVL-MaLR	chr14	123169293	123169295	+	ENSMUST00000226524.1,ENSMUSG00000115016.1	AC158982.1	ENSMUSG00000115016.1	ENSMUST00000226524.1	processed_transcript	chr14:123169294-123253899
chr14	123987052	123987637	-	RMER17A	LTR	ERVK	chr14	123987634	123987636	+	ENSMUST00000190088.1,ENSMUSG00000099994.1	1700024B18Rik	ENSMUSG00000099994.1	ENSMUST00000190088.1	antisense	chr14:123987635-124015684
chr14	124531766	124531952	+	Lx5	LINE	L1	chr14	124531951	124531953	+	ENSMUST00000227084.1,ENSMUSG00000115191.1	Gm49071	ENSMUSG00000115191.1	ENSMUST00000227084.1	processed_pseudogene	chr14:124531952-124532403
chr14	124612467	124613299	+	Lx5b	LINE	L1	chr14	124612491	124612493	-	ENSMUST00000228608.1,ENSMUSG00000114970.1	Gm49069	ENSMUSG00000114970.1	ENSMUST00000228608.1	TEC	chr14:124608482-124612492
chr14	124677093	124677154	+	(A)n	Simple_repeat	Simple_repeat	chr14	124677126	124677128	-	ENSMUST00000095529.9,ENSMUSG00000025551.13	Fgf14	ENSMUSG00000025551.13	ENSMUST00000095529.9	protein_coding	chr14:123977907-124677127
chr15	3798912	3799097	+	7SK	RNA	RNA	chr15	3798911	3798913	+	ENSMUST00000157296.1,ENSMUSG00000087921.1	Gm23228	ENSMUSG00000087921.1	ENSMUST00000157296.1	misc_RNA	chr15:3798912-3799181
chr15	3972836	3972958	-	L1M2	LINE	L1	chr15	3972859	3972861	-	ENSMUST00000148817.1,ENSMUSG00000022184.8	Fbxo4	ENSMUSG00000022184.8	ENSMUST00000148817.1	protein_coding	chr15:3969038-3972860
chr15	4071944	4072232	+	Lx9	LINE	L1	chr15	4072031	4072033	-	ENSMUST00000135936.1,ENSMUSG00000086297.1	Gm15632	ENSMUSG00000086297.1	ENSMUST00000135936.1	antisense	chr15:4069226-4072032
chr15	4929724	4929992	-	Tigger9b	DNA	TcMar-Tigger	chr15	4929852	4929854	+	ENSMUST00000228458.1,ENSMUSG00000022155.9	Mroh2b	ENSMUSG00000022155.9	ENSMUST00000228458.1	protein_coding	chr15:4929853-4962205
chr15	5035359	5035462	+	U6	snRNA	snRNA	chr15	5035359	5035361	+	ENSMUST00000083780.1,ENSMUSG00000065714.1	Gm25652	ENSMUSG00000065714.1	ENSMUST00000083780.1	snRNA	chr15:5035360-5035462
chr15	5143773	5143868	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr15	5143860	5143862	+	ENSMUST00000051186.8,ENSMUSG00000050697.9	Prkaa1	ENSMUSG00000050697.9	ENSMUST00000051186.8	protein_coding	chr15:5143861-5181899
chr15	5864276	5864743	-	RLTR26B_MM	LTR	ERVK	chr15	5864305	5864307	+	ENSMUST00000185048.1,ENSMUSG00000098565.1	Gm27760	ENSMUSG00000098565.1	ENSMUST00000185048.1	miRNA	chr15:5864306-5864419
chr15	5951199	5951444	-	RMER20B	LTR	ERVK	chr15	5951443	5951445	+	ENSMUST00000226154.1,ENSMUSG00000115342.1	Gm49095	ENSMUSG00000115342.1	ENSMUST00000226154.1	processed_pseudogene	chr15:5951444-5952359
chr15	6299851	6300209	-	LTR16B	LTR	ERVL	chr15	6299867	6299869	+	ENSMUST00000162140.1,ENSMUSG00000022150.16	Dab2	ENSMUSG00000022150.16	ENSMUST00000162140.1	protein_coding	chr15:6299868-6337206
chr15	6489424	6489519	+	MIR	SINE	MIR	chr15	6489479	6489481	+	ENSMUST00000127196.1,ENSMUSG00000022149.17	C9	ENSMUSG00000022149.17	ENSMUST00000127196.1	protein_coding	chr15:6489480-6491422
chr15	6500696	6500916	+	7SK	RNA	RNA	chr15	6500696	6500698	+	ENSMUST00000158124.1,ENSMUSG00000088749.1	Gm23218	ENSMUSG00000088749.1	ENSMUST00000158124.1	misc_RNA	chr15:6500697-6500972
chr15	7140329	7140713	+	MTC	LTR	ERVL-MaLR	chr15	7140541	7140543	+	ENSMUST00000226934.1,ENSMUSG00000054263.12	Lifr	ENSMUSG00000054263.12	ENSMUST00000226934.1	protein_coding	chr15:7140542-7191218
chr15	7140329	7140713	+	MTC	LTR	ERVL-MaLR	chr15	7140541	7140543	+	ENSMUST00000226471.1,ENSMUSG00000054263.12	Lifr	ENSMUSG00000054263.12	ENSMUST00000226471.1	protein_coding	chr15:7140542-7191218
chr15	7140329	7140713	+	MTC	LTR	ERVL-MaLR	chr15	7140548	7140550	+	ENSMUST00000227727.1,ENSMUSG00000054263.12	Lifr	ENSMUSG00000054263.12	ENSMUST00000227727.1	protein_coding	chr15:7140549-7185346
chr15	8220003	8220114	+	U6	snRNA	snRNA	chr15	8220003	8220005	+	ENSMUST00000082632.1,ENSMUSG00000064566.1	Gm24144	ENSMUSG00000064566.1	ENSMUST00000082632.1	snRNA	chr15:8220004-8220114
chr15	8481991	8482145	-	MLT1A1	LTR	ERVL-MaLR	chr15	8482118	8482120	+	ENSMUST00000227472.1,ENSMUSG00000115591.1	Gm31282	ENSMUSG00000115591.1	ENSMUST00000227472.1	lincRNA	chr15:8482119-8500343
chr15	8643210	8643264	+	(A)n	Simple_repeat	Simple_repeat	chr15	8643246	8643248	-	ENSMUST00000128879.1,ENSMUSG00000005360.14	Slc1a3	ENSMUSG00000005360.14	ENSMUST00000128879.1	protein_coding	chr15:8642256-8643247
chr15	9155139	9155489	-	ORR1C1	LTR	ERVL-MaLR	chr15	9155423	9155425	-	ENSMUST00000190131.1,ENSMUSG00000054115.11	Skp2	ENSMUSG00000054115.11	ENSMUST00000190131.1	protein_coding	chr15:9113302-9155424
chr15	9155139	9155489	-	ORR1C1	LTR	ERVL-MaLR	chr15	9155424	9155426	-	ENSMUST00000190406.1,ENSMUSG00000054115.11	Skp2	ENSMUSG00000054115.11	ENSMUST00000190406.1	protein_coding	chr15:9152277-9155425
chr15	9276659	9276970	+	RLTR27	LTR	ERVK	chr15	9276887	9276889	+	ENSMUST00000175695.8,ENSMUSG00000072664.11	Ugt3a1	ENSMUSG00000072664.11	ENSMUST00000175695.8	protein_coding	chr15:9276888-9310512
chr15	9283446	9283904	+	ERVB5_2-LTR_MM	LTR	ERVK	chr15	9283500	9283502	+	ENSMUST00000176878.1,ENSMUSG00000072664.11	Ugt3a1	ENSMUSG00000072664.11	ENSMUST00000176878.1	protein_coding	chr15:9283501-9292027
chr15	9529745	9529793	+	(GA)n	Simple_repeat	Simple_repeat	chr15	9529765	9529767	-	ENSMUST00000227234.1,ENSMUSG00000003882.5	Il7r	ENSMUSG00000003882.5	ENSMUST00000227234.1	protein_coding	chr15:9511898-9529766
chr15	10051130	10051829	-	Lx8b	LINE	L1	chr15	10051825	10051827	+	ENSMUST00000157531.1,ENSMUSG00000088156.1	Gm26350	ENSMUSG00000088156.1	ENSMUST00000157531.1	misc_RNA	chr15:10051826-10052113
chr15	10449885	10450017	-	B4A	SINE	B4	chr15	10449991	10449993	-	ENSMUST00000146323.7,ENSMUSG00000044224.16	Dnajc21	ENSMUSG00000044224.16	ENSMUST00000146323.7	protein_coding	chr15:10446766-10449992
chr15	10470494	10470544	+	(CGG)n	Simple_repeat	Simple_repeat	chr15	10470515	10470517	-	ENSMUST00000136591.7,ENSMUSG00000044224.16	Dnajc21	ENSMUSG00000044224.16	ENSMUST00000136591.7	protein_coding	chr15:10446756-10470516
chr15	10600138	10600524	-	Lx7	LINE	L1	chr15	10600292	10600294	+	ENSMUST00000227861.1,ENSMUSG00000115667.1	Gm10389	ENSMUSG00000115667.1	ENSMUST00000227861.1	antisense	chr15:10600293-10611651
chr15	10600138	10600524	-	Lx7	LINE	L1	chr15	10600336	10600338	+	ENSMUST00000228059.1,ENSMUSG00000115667.1	Gm10389	ENSMUSG00000115667.1	ENSMUST00000228059.1	antisense	chr15:10600337-10607491
chr15	10717711	10718018	+	ORR1F	LTR	ERVL-MaLR	chr15	10717850	10717852	+	ENSMUST00000181739.2,ENSMUSG00000096971.2	4930556M19Rik	ENSMUSG00000096971.2	ENSMUST00000181739.2	processed_transcript	chr15:10717851-10721936
chr15	11630307	11630936	-	RLTR17	LTR	ERVK	chr15	11630739	11630741	-	ENSMUST00000228516.1,ENSMUSG00000115076.1	Gm49106	ENSMUSG00000115076.1	ENSMUST00000228516.1	lincRNA	chr15:11625097-11630740
chr15	11630307	11630936	-	RLTR17	LTR	ERVK	chr15	11630745	11630747	-	ENSMUST00000228923.1,ENSMUSG00000115076.1	Gm49106	ENSMUSG00000115076.1	ENSMUST00000228923.1	lincRNA	chr15:11626403-11630746
chr15	11630307	11630936	-	RLTR17	LTR	ERVK	chr15	11630728	11630730	+	ENSMUST00000228129.1,ENSMUSG00000115804.1	Gm49107	ENSMUSG00000115804.1	ENSMUST00000228129.1	lincRNA	chr15:11630729-11638325
chr15	11965322	11965415	+	7SK	RNA	RNA	chr15	11965329	11965331	+	ENSMUST00000158178.1,ENSMUSG00000088803.1	Gm24074	ENSMUSG00000088803.1	ENSMUST00000158178.1	misc_RNA	chr15:11965330-11965589
chr15	12158337	12158441	-	U6	snRNA	snRNA	chr15	12158440	12158442	-	ENSMUST00000158625.1,ENSMUSG00000089250.1	Gm25713	ENSMUSG00000089250.1	ENSMUST00000158625.1	snRNA	chr15:12158333-12158441
chr15	12205056	12205166	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	12205084	12205086	+	ENSMUST00000071993.12,ENSMUSG00000039458.15	Mtmr12	ENSMUSG00000039458.15	ENSMUST00000071993.12	protein_coding	chr15:12205085-12271994
chr15	12205056	12205166	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	12205103	12205105	+	ENSMUST00000174418.7,ENSMUSG00000039458.15	Mtmr12	ENSMUSG00000039458.15	ENSMUST00000174418.7	protein_coding	chr15:12205104-12272119
chr15	12205056	12205166	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	12205117	12205119	+	ENSMUST00000174160.2,ENSMUSG00000039458.15	Mtmr12	ENSMUSG00000039458.15	ENSMUST00000174160.2	protein_coding	chr15:12205118-12272240
chr15	12321368	12321487	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	12321449	12321451	+	ENSMUST00000228301.1,ENSMUSG00000022200.8	Golph3	ENSMUSG00000022200.8	ENSMUST00000228301.1	protein_coding	chr15:12321450-12343430
chr15	12321368	12321487	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	12321449	12321451	+	ENSMUST00000059680.6,ENSMUSG00000022200.8	Golph3	ENSMUSG00000022200.8	ENSMUST00000059680.6	protein_coding	chr15:12321450-12351265
chr15	12321368	12321487	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	12321457	12321459	+	ENSMUST00000227895.1,ENSMUSG00000022200.8	Golph3	ENSMUSG00000022200.8	ENSMUST00000227895.1	protein_coding	chr15:12321458-12343311
chr15	12412265	12412453	+	B2_Mm1a	SINE	B2	chr15	12412379	12412381	-	ENSMUST00000191339.1,ENSMUSG00000022197.16	Pdzd2	ENSMUSG00000022197.16	ENSMUST00000191339.1	protein_coding	chr15:12404932-12412380
chr15	12572204	12572598	-	MTA_Mm	LTR	ERVL-MaLR	chr15	12572529	12572531	-	ENSMUST00000179085.1,ENSMUSG00000095516.1	Gm24135	ENSMUSG00000095516.1	ENSMUST00000179085.1	miRNA	chr15:12572430-12572530
chr15	12695055	12695450	+	MTA_Mm	LTR	ERVL-MaLR	chr15	12695123	12695125	+	ENSMUST00000178350.1,ENSMUSG00000095842.1	Gm24302	ENSMUSG00000095842.1	ENSMUST00000178350.1	miRNA	chr15:12695124-12695224
chr15	12842089	12842260	-	MER5A	DNA	hAT-Charlie	chr15	12842095	12842097	+	ENSMUST00000198820.1,ENSMUSG00000104911.1	Gm47288	ENSMUSG00000104911.1	ENSMUST00000198820.1	miRNA	chr15:12842096-12842235
chr15	12980828	12980908	+	5S	rRNA	rRNA	chr15	12980828	12980830	+	ENSMUST00000158939.1,ENSMUSG00000089564.1	Gm24664	ENSMUSG00000089564.1	ENSMUST00000158939.1	rRNA	chr15:12980829-12980928
chr15	13760920	13761079	-	ORR1F	LTR	ERVL-MaLR	chr15	13761026	13761028	-	ENSMUST00000226118.1,ENSMUSG00000115419.1	Gm49113	ENSMUSG00000115419.1	ENSMUST00000226118.1	lincRNA	chr15:13754781-13761027
chr15	14459270	14459600	+	ORR1A3	LTR	ERVL-MaLR	chr15	14459375	14459377	+	ENSMUST00000227703.1,ENSMUSG00000115782.1	Gm49116	ENSMUSG00000115782.1	ENSMUST00000227703.1	lincRNA	chr15:14459376-14480986
chr15	14735237	14735417	+	(GAA)n	Simple_repeat	Simple_repeat	chr15	14735283	14735285	-	ENSMUST00000175178.2,ENSMUSG00000092919.2	Gm24080	ENSMUSG00000092919.2	ENSMUST00000175178.2	miRNA	chr15:14735053-14735284
chr15	15779724	15780108	-	IAPEY_LTR	LTR	ERVK	chr15	15779993	15779995	+	ENSMUST00000226912.1,ENSMUSG00000115266.1	4930557F08Rik	ENSMUSG00000115266.1	ENSMUST00000226912.1	lincRNA	chr15:15779994-15823424
chr15	16496574	16496941	+	ORR1C2	LTR	ERVL-MaLR	chr15	16496811	16496813	-	ENSMUST00000227529.1,ENSMUSG00000115614.1	Gm41276	ENSMUSG00000115614.1	ENSMUST00000227529.1	lincRNA	chr15:16489015-16496812
chr15	16496574	16496941	+	ORR1C2	LTR	ERVL-MaLR	chr15	16496910	16496912	+	ENSMUST00000227245.1,ENSMUSG00000115485.1	Gm49126	ENSMUSG00000115485.1	ENSMUST00000227245.1	lincRNA	chr15:16496911-16549904
chr15	17076858	17077253	-	Lx3C	LINE	L1	chr15	17076938	17076940	-	ENSMUST00000227358.1,ENSMUSG00000115182.1	Gm49128	ENSMUSG00000115182.1	ENSMUST00000227358.1	lincRNA	chr15:17025339-17076939
chr15	17591590	17591688	-	RMER12	LTR	ERVK	chr15	17591680	17591682	-	ENSMUST00000116946.1,ENSMUSG00000080596.1	Gm22032	ENSMUSG00000080596.1	ENSMUST00000116946.1	miRNA	chr15:17591566-17591681
chr15	18009262	18009369	-	U6	snRNA	snRNA	chr15	18009368	18009370	-	ENSMUST00000178850.1,ENSMUSG00000096339.1	Gm24713	ENSMUSG00000096339.1	ENSMUST00000178850.1	snRNA	chr15:18009263-18009369
chr15	18009369	18010005	+	Lx8b	LINE	L1	chr15	18009368	18009370	-	ENSMUST00000178850.1,ENSMUSG00000096339.1	Gm24713	ENSMUSG00000096339.1	ENSMUST00000178850.1	snRNA	chr15:18009263-18009369
chr15	18063829	18064380	-	Lx9	LINE	L1	chr15	18064110	18064112	-	ENSMUST00000226302.1,ENSMUSG00000115492.1	Gm41277	ENSMUSG00000115492.1	ENSMUST00000226302.1	lincRNA	chr15:18057826-18064111
chr15	18259235	18261041	-	L1_Mus3	LINE	L1	chr15	18259799	18259801	-	ENSMUST00000183117.2,ENSMUSG00000098150.2	4921515E04Rik	ENSMUSG00000098150.2	ENSMUST00000183117.2	processed_transcript	chr15:18078118-18259800
chr15	18368860	18374903	+	L1_Mus1	LINE	L1	chr15	18369626	18369628	-	ENSMUST00000227364.1,ENSMUSG00000098150.2	4921515E04Rik	ENSMUSG00000098150.2	ENSMUST00000227364.1	processed_transcript	chr15:18078137-18369627
chr15	18635635	18635712	+	(CTG)n	Simple_repeat	Simple_repeat	chr15	18635705	18635707	+	ENSMUST00000228241.1,ENSMUSG00000115254.1	Gm49140	ENSMUSG00000115254.1	ENSMUST00000228241.1	processed_pseudogene	chr15:18635706-18636006
chr15	19005225	19007192	-	L1Md_F2	LINE	L1	chr15	19006979	19006981	+	ENSMUST00000176409.1,ENSMUSG00000022321.15	Cdh10	ENSMUSG00000022321.15	ENSMUST00000176409.1	protein_coding	chr15:19006980-19014236
chr15	19237202	19237795	-	MT2B	LTR	ERVL	chr15	19237748	19237750	+	ENSMUST00000226570.1,ENSMUSG00000115352.1	Gm49160	ENSMUSG00000115352.1	ENSMUST00000226570.1	lincRNA	chr15:19237749-19240281
chr15	19395291	19395965	-	RLTR17	LTR	ERVK	chr15	19395421	19395423	-	ENSMUST00000228706.1,ENSMUSG00000114971.1	Gm49162	ENSMUSG00000114971.1	ENSMUST00000228706.1	lincRNA	chr15:19302948-19395422
chr15	19678007	19684833	+	L1Md_A	LINE	L1	chr15	19678231	19678233	+	ENSMUST00000226230.1,ENSMUSG00000115413.1	Gm49166	ENSMUSG00000115413.1	ENSMUST00000226230.1	lincRNA	chr15:19678232-19691806
chr15	20324261	20330638	-	L1Md_F2	LINE	L1	chr15	20329489	20329491	+	ENSMUST00000227779.1,ENSMUSG00000115086.1	Gm49177	ENSMUSG00000115086.1	ENSMUST00000227779.1	processed_pseudogene	chr15:20329490-20329869
chr15	20914104	20920333	-	L1Md_T	LINE	L1	chr15	20920213	20920215	+	ENSMUST00000184997.1,ENSMUSG00000098821.1	Gm27397	ENSMUSG00000098821.1	ENSMUST00000184997.1	miRNA	chr15:20920214-20920320
chr15	21114368	21114475	+	U6	snRNA	snRNA	chr15	21114368	21114370	+	ENSMUST00000179057.1,ENSMUSG00000095678.1	Gm25101	ENSMUSG00000095678.1	ENSMUST00000179057.1	snRNA	chr15:21114369-21114475
chr15	21958393	21958434	-	MT2C_Mm	LTR	ERVL	chr15	21958431	21958433	+	ENSMUST00000227154.1,ENSMUSG00000115708.1	Gm49187	ENSMUSG00000115708.1	ENSMUST00000227154.1	TEC	chr15:21958432-21959811
chr15	22267958	22274331	-	L1Md_T	LINE	L1	chr15	22274069	22274071	+	ENSMUST00000184465.1,ENSMUSG00000098700.1	Gm27525	ENSMUSG00000098700.1	ENSMUST00000184465.1	miRNA	chr15:22274070-22274176
chr15	22548964	22549043	+	(GA)n	Simple_repeat	Simple_repeat	chr15	22549021	22549023	+	ENSMUST00000163361.7,ENSMUSG00000040420.15	Cdh18	ENSMUSG00000040420.15	ENSMUST00000163361.7	protein_coding	chr15:22549022-23400567
chr15	23646416	23646577	-	U1	snRNA	snRNA	chr15	23646576	23646578	-	ENSMUST00000157135.1,ENSMUSG00000087760.1	Gm23980	ENSMUSG00000087760.1	ENSMUST00000157135.1	snRNA	chr15:23646420-23646577
chr15	23729225	23734639	+	L1Md_A	LINE	L1	chr15	23729652	23729654	-	ENSMUST00000228912.1,ENSMUSG00000115129.1	Gm48916	ENSMUSG00000115129.1	ENSMUST00000228912.1	TEC	chr15:23725793-23729653
chr15	23853908	23854004	-	RLTR42-int	LTR	ERVK	chr15	23853909	23853911	-	ENSMUST00000227902.1,ENSMUSG00000115365.1	Gm18582	ENSMUSG00000115365.1	ENSMUST00000227902.1	processed_pseudogene	chr15:23851740-23853910
chr15	24099203	24099383	-	Lx7	LINE	L1	chr15	24099206	24099208	-	ENSMUST00000227649.1,ENSMUSG00000115586.1	Gm48918	ENSMUSG00000115586.1	ENSMUST00000227649.1	TEC	chr15:24095965-24099207
chr15	24375166	24375895	-	RMER17A	LTR	ERVK	chr15	24375674	24375676	-	ENSMUST00000228438.1,ENSMUSG00000115198.1	AC131068.1	ENSMUSG00000115198.1	ENSMUST00000228438.1	lincRNA	chr15:24254986-24375675
chr15	24375166	24375895	-	RMER17A	LTR	ERVK	chr15	24375626	24375628	-	ENSMUST00000226891.1,ENSMUSG00000115047.1	4930540I17Rik	ENSMUSG00000115047.1	ENSMUST00000226891.1	processed_transcript	chr15:24373610-24375627
chr15	25018247	25018649	-	RLTR9D	LTR	ERVK	chr15	25018393	25018395	-	ENSMUST00000226189.1,ENSMUSG00000097452.2	Gm2824	ENSMUSG00000097452.2	ENSMUST00000226189.1	lincRNA	chr15:25004993-25018394
chr15	25128368	25128835	-	L1MC1	LINE	L1	chr15	25128403	25128405	-	ENSMUST00000226274.1,ENSMUSG00000115174.1	Gm35996	ENSMUSG00000115174.1	ENSMUST00000226274.1	lincRNA	chr15:25101020-25128404
chr15	25149028	25149160	-	RSINE1	SINE	B4	chr15	25149158	25149160	-	ENSMUST00000056401.4,ENSMUSG00000051237.7	9230109A22Rik	ENSMUSG00000051237.7	ENSMUST00000056401.4	lincRNA	chr15:25137530-25149159
chr15	25332497	25332984	+	RMER5	LTR	ERV1	chr15	25332658	25332660	-	ENSMUST00000226199.1,ENSMUSG00000115355.1	4930445E18Rik	ENSMUSG00000115355.1	ENSMUST00000226199.1	lincRNA	chr15:25285802-25332659
chr15	25332497	25332984	+	RMER5	LTR	ERV1	chr15	25332647	25332649	-	ENSMUST00000228450.1,ENSMUSG00000115355.1	4930445E18Rik	ENSMUSG00000115355.1	ENSMUST00000228450.1	lincRNA	chr15:25295467-25332648
chr15	25674370	25674518	-	Tigger16a	DNA	TcMar-Tigger	chr15	25674509	25674511	+	ENSMUST00000130517.7,ENSMUSG00000022272.17	Myo10	ENSMUSG00000022272.17	ENSMUST00000130517.7	protein_coding	chr15:25674510-25723950
chr15	25780009	25780191	-	B4A	SINE	B4	chr15	25780189	25780191	+	ENSMUST00000145587.1,ENSMUSG00000022272.17	Myo10	ENSMUSG00000022272.17	ENSMUST00000145587.1	protein_coding	chr15:25780190-25781368
chr15	25940791	25940826	+	(CA)n	Simple_repeat	Simple_repeat	chr15	25940825	25940827	+	ENSMUST00000226438.1,ENSMUSG00000022270.16	Retreg1	ENSMUSG00000022270.16	ENSMUST00000226438.1	protein_coding	chr15:25940826-25973668
chr15	26062340	26062469	+	RMER4B	LTR	ERVK	chr15	26062437	26062439	-	ENSMUST00000227975.1,ENSMUSG00000115335.1	Gm41279	ENSMUSG00000115335.1	ENSMUST00000227975.1	lincRNA	chr15:26054365-26062438
chr15	26746094	26746346	+	ORR1F	LTR	ERVL-MaLR	chr15	26746136	26746138	-	ENSMUST00000227799.1,ENSMUSG00000115381.1	Gm49266	ENSMUSG00000115381.1	ENSMUST00000227799.1	TEC	chr15:26743232-26746137
chr15	27061846	27062270	-	MTC-int	LTR	ERVL-MaLR	chr15	27061865	27061867	-	ENSMUST00000157566.1,ENSMUSG00000088191.1	Gm23903	ENSMUSG00000088191.1	ENSMUST00000157566.1	snoRNA	chr15:27061736-27061866
chr15	27479001	27479347	-	ORR1A2	LTR	ERVL-MaLR	chr15	27479005	27479007	+	ENSMUST00000227393.1,ENSMUSG00000115568.1	Tiaf2	ENSMUSG00000115568.1	ENSMUST00000227393.1	TEC	chr15:27479006-27480902
chr15	27748551	27748623	+	(CTG)n	Simple_repeat	Simple_repeat	chr15	27748550	27748552	-	ENSMUST00000227030.1,ENSMUSG00000022263.10	Trio	ENSMUSG00000022263.10	ENSMUST00000227030.1	protein_coding	chr15:27732129-27748551
chr15	27995348	27995423	-	RLTR31D_MM	LTR	ERVK	chr15	27995362	27995364	-	ENSMUST00000228950.1,ENSMUSG00000022263.10	Trio	ENSMUSG00000022263.10	ENSMUST00000228950.1	protein_coding	chr15:27919133-27995363
chr15	28192113	28192136	+	(T)n	Simple_repeat	Simple_repeat	chr15	28192121	28192123	-	ENSMUST00000228611.1,ENSMUSG00000115806.1	Gm49234	ENSMUSG00000115806.1	ENSMUST00000228611.1	TEC	chr15:28190894-28192122
chr15	28540459	28540478	+	L1_Mus3	LINE	L1	chr15	28540470	28540472	-	ENSMUST00000226803.1,ENSMUSG00000115156.1	Gm49279	ENSMUSG00000115156.1	ENSMUST00000226803.1	processed_pseudogene	chr15:28540214-28540471
chr15	29713391	29713780	+	RMER1A	Other	Other	chr15	29713403	29713405	-	ENSMUST00000174898.1,ENSMUSG00000092639.1	Mir3964	ENSMUSG00000092639.1	ENSMUST00000174898.1	miRNA	chr15:29713331-29713404
chr15	30004123	30004200	+	(TC)n	Simple_repeat	Simple_repeat	chr15	30004133	30004135	-	ENSMUST00000158654.1,ENSMUSG00000089279.1	Gm24554	ENSMUSG00000089279.1	ENSMUST00000158654.1	snoRNA	chr15:30004062-30004134
chr15	30600706	30601923	+	RLTR25B	LTR	ERVK	chr15	30601513	30601515	+	ENSMUST00000178017.1,ENSMUSG00000094704.1	Gm24487	ENSMUSG00000094704.1	ENSMUST00000178017.1	snRNA	chr15:30601514-30601576
chr15	31026386	31026447	+	T-rich	Low_complexity	Low_complexity	chr15	31026395	31026397	+	ENSMUST00000228827.1,ENSMUSG00000022240.10	Ctnnd2	ENSMUSG00000022240.10	ENSMUST00000228827.1	protein_coding	chr15:31026396-31028409
chr15	31504407	31504557	+	B4A	SINE	B4	chr15	31504553	31504555	-	ENSMUST00000226207.1,ENSMUSG00000039100.10	March6	ENSMUSG00000039100.10	ENSMUST00000226207.1	protein_coding	chr15:31501886-31504554
chr15	31531021	31531082	+	GC_rich	Low_complexity	Low_complexity	chr15	31531052	31531054	-	ENSMUST00000090227.5,ENSMUSG00000039100.10	March6	ENSMUSG00000039100.10	ENSMUST00000090227.5	protein_coding	chr15:31455891-31531053
chr15	31531021	31531082	+	GC_rich	Low_complexity	Low_complexity	chr15	31531052	31531054	-	ENSMUST00000228122.1,ENSMUSG00000039100.10	March6	ENSMUSG00000039100.10	ENSMUST00000228122.1	protein_coding	chr15:31502817-31531053
chr15	31621893	31622288	-	MTA_Mm	LTR	ERVL-MaLR	chr15	31621971	31621973	+	ENSMUST00000227896.1,ENSMUSG00000114995.1	Gm49284	ENSMUSG00000114995.1	ENSMUST00000227896.1	TEC	chr15:31621972-31624035
chr15	32773090	32773748	+	RMER17A	LTR	ERVK	chr15	32773151	32773153	-	ENSMUST00000227504.1,ENSMUSG00000115749.1	Gm41289	ENSMUSG00000115749.1	ENSMUST00000227504.1	lincRNA	chr15:32757416-32773152
chr15	33065738	33068605	+	MuRRS4-int	LTR	ERV1	chr15	33066224	33066226	-	ENSMUST00000226596.1,ENSMUSG00000115140.1	Gm32764	ENSMUSG00000115140.1	ENSMUST00000226596.1	lincRNA	chr15:33046021-33066225
chr15	33073395	33073920	-	LTRIS2	LTR	ERV1	chr15	33073522	33073524	-	ENSMUST00000226619.1,ENSMUSG00000115140.1	Gm32764	ENSMUSG00000115140.1	ENSMUST00000226619.1	lincRNA	chr15:33064347-33073523
chr15	33653213	33653592	-	MLT1G3	LTR	ERVL-MaLR	chr15	33653435	33653437	-	ENSMUST00000228272.1,ENSMUSG00000115779.1	4930592A05Rik	ENSMUSG00000115779.1	ENSMUST00000228272.1	antisense	chr15:33593881-33653436
chr15	33831448	33831584	+	ERVB4_2-LTR_MM	LTR	ERVK	chr15	33831447	33831449	+	ENSMUST00000227474.1,ENSMUSG00000115318.1	Gm49089	ENSMUSG00000115318.1	ENSMUST00000227474.1	TEC	chr15:33831448-33834353
chr15	34052630	34053128	-	MuRRS4-int	LTR	ERV1	chr15	34053117	34053119	+	ENSMUST00000227515.1,ENSMUSG00000115440.1	Gm49091	ENSMUSG00000115440.1	ENSMUST00000227515.1	processed_pseudogene	chr15:34053118-34053267
chr15	34133241	34133853	-	RMER1A	Other	Other	chr15	34133489	34133491	+	ENSMUST00000171711.1,ENSMUSG00000022255.16	Mtdh	ENSMUSG00000022255.16	ENSMUST00000171711.1	protein_coding	chr15:34133490-34141283
chr15	34288851	34288943	+	Lx5b	LINE	L1	chr15	34288869	34288871	-	ENSMUST00000122789.2,ENSMUSG00000084738.2	Gm25809	ENSMUSG00000084738.2	ENSMUST00000122789.2	snoRNA	chr15:34288819-34288870
chr15	34357709	34357912	-	B3	SINE	B2	chr15	34357871	34357873	-	ENSMUST00000227772.1,ENSMUSG00000094447.2	9430069I07Rik	ENSMUSG00000094447.2	ENSMUST00000227772.1	protein_coding	chr15:34349051-34357872
chr15	34441661	34441744	+	B3A	SINE	B2	chr15	34441664	34441666	-	ENSMUST00000136653.1,ENSMUSG00000058600.13	Rpl30	ENSMUSG00000058600.13	ENSMUST00000136653.1	protein_coding	chr15:34440575-34441665
chr15	34481655	34481708	+	RMER10A	LTR	ERVL	chr15	34481706	34481708	+	ENSMUST00000226218.1,ENSMUSG00000115300.1	Gm49188	ENSMUSG00000115300.1	ENSMUST00000226218.1	TEC	chr15:34481707-34483829
chr15	34514155	34514243	+	ID4	SINE	ID	chr15	34514169	34514171	+	ENSMUST00000155073.7,ENSMUSG00000022325.14	Pop1	ENSMUSG00000022325.14	ENSMUST00000155073.7	protein_coding	chr15:34514170-34518018
chr15	34531713	34531806	+	U6	snRNA	snRNA	chr15	34531713	34531715	+	ENSMUST00000122658.1,ENSMUSG00000084607.1	Gm22208	ENSMUSG00000084607.1	ENSMUST00000122658.1	snRNA	chr15:34531714-34531823
chr15	34674853	34675657	-	RMER1B	Other	Other	chr15	34675072	34675074	+	ENSMUST00000228853.1,ENSMUSG00000115526.1	4930413F20Rik	ENSMUSG00000115526.1	ENSMUST00000228853.1	antisense	chr15:34675073-34679204
chr15	35178744	35179140	-	MTA_Mm	LTR	ERVL-MaLR	chr15	35178920	35178922	-	ENSMUST00000226555.1,ENSMUSG00000022329.15	Stk3	ENSMUSG00000022329.15	ENSMUST00000226555.1	protein_coding	chr15:34875496-35178921
chr15	35328291	35328636	-	ORR1B2	LTR	ERVL-MaLR	chr15	35328534	35328536	-	ENSMUST00000227345.1,ENSMUSG00000115453.1	BC048602	ENSMUSG00000115453.1	ENSMUST00000227345.1	lincRNA	chr15:35307010-35328535
chr15	35567246	35569242	-	L1Md_F2	LINE	L1	chr15	35568242	35568244	+	ENSMUST00000227179.1,ENSMUSG00000115314.1	Gm48966	ENSMUSG00000115314.1	ENSMUST00000227179.1	TEC	chr15:35568243-35569885
chr15	35583802	35590233	-	L1Md_T	LINE	L1	chr15	35589313	35589315	+	ENSMUST00000228376.1,ENSMUSG00000115144.1	Gm7968	ENSMUSG00000115144.1	ENSMUST00000228376.1	TEC	chr15:35589314-35591638
chr15	35733343	35733624	+	MTE2b	LTR	ERVL-MaLR	chr15	35733603	35733605	+	ENSMUST00000228224.1,ENSMUSG00000115040.1	Gm18994	ENSMUSG00000115040.1	ENSMUST00000228224.1	processed_pseudogene	chr15:35733604-35734622
chr15	35787003	35788552	-	MERVL-int	LTR	ERVL	chr15	35787153	35787155	+	ENSMUST00000228829.1,ENSMUSG00000115837.1	9130002K18Rik	ENSMUSG00000115837.1	ENSMUST00000228829.1	TEC	chr15:35787154-35790279
chr15	35855002	35855486	+	L1Md_F2	LINE	L1	chr15	35855393	35855395	+	ENSMUST00000226372.1,ENSMUSG00000115340.1	Gm48965	ENSMUSG00000115340.1	ENSMUST00000226372.1	TEC	chr15:35855394-35857791
chr15	36178094	36178114	+	(T)n	Simple_repeat	Simple_repeat	chr15	36178098	36178100	+	ENSMUST00000227623.1,ENSMUSG00000037617.12	Spag1	ENSMUSG00000037617.12	ENSMUST00000227623.1	protein_coding	chr15:36178099-36183742
chr15	36205041	36205261	-	Lx8	LINE	L1	chr15	36205259	36205261	+	ENSMUST00000157576.1,ENSMUSG00000088201.1	Gm23754	ENSMUSG00000088201.1	ENSMUST00000157576.1	snRNA	chr15:36205260-36205322
chr15	36226474	36226743	-	L1_Mus2	LINE	L1	chr15	36226667	36226669	+	ENSMUST00000227715.1,ENSMUSG00000037617.12	Spag1	ENSMUSG00000037617.12	ENSMUST00000227715.1	protein_coding	chr15:36226668-36234454
chr15	36283143	36283265	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr15	36283146	36283148	-	ENSMUST00000022890.9,ENSMUSG00000022280.9	Rnf19a	ENSMUSG00000022280.9	ENSMUST00000022890.9	protein_coding	chr15:36239933-36283147
chr15	36349727	36349890	-	LTR82B	LTR	ERVL	chr15	36349753	36349755	-	ENSMUST00000228917.1,ENSMUSG00000115715.1	Gm33936	ENSMUSG00000115715.1	ENSMUST00000228917.1	processed_transcript	chr15:36342782-36349754
chr15	36436460	36436858	-	BGLII_Mus	LTR	ERVK	chr15	36436690	36436692	-	ENSMUST00000227487.1,ENSMUSG00000115395.1	Gm49224	ENSMUSG00000115395.1	ENSMUST00000227487.1	lincRNA	chr15:36433319-36436691
chr15	36545933	36546624	+	RMER19B	LTR	ERVK	chr15	36546144	36546146	-	ENSMUST00000160936.2,ENSMUSG00000013611.14	Snx31	ENSMUSG00000013611.14	ENSMUST00000160936.2	protein_coding	chr15:36537508-36546145
chr15	36583530	36583672	-	B1_Mus1	SINE	Alu	chr15	36583543	36583545	+	ENSMUST00000175424.2,ENSMUSG00000105494.1	Gm44310	ENSMUSG00000105494.1	ENSMUST00000175424.2	miRNA	chr15:36583544-36583669
chr15	36629124	36629266	-	B1_Mur3	SINE	Alu	chr15	36629159	36629161	+	ENSMUST00000228278.1,ENSMUSG00000115037.1	Gm49262	ENSMUSG00000115037.1	ENSMUST00000228278.1	lincRNA	chr15:36629160-36629991
chr15	36629820	36629878	-	Tigger12	DNA	TcMar-Tigger	chr15	36629868	36629870	-	ENSMUST00000226628.1,ENSMUSG00000115537.1	Gm6704	ENSMUSG00000115537.1	ENSMUST00000226628.1	processed_pseudogene	chr15:36629645-36629869
chr15	36695632	36695874	-	MLT1J	LTR	ERVL-MaLR	chr15	36695664	36695666	-	ENSMUST00000226482.1,ENSMUSG00000115127.1	Gm46515	ENSMUSG00000115127.1	ENSMUST00000226482.1	lincRNA	chr15:36632769-36695665
chr15	36723353	36723900	+	RLTR26	LTR	ERVK	chr15	36723646	36723648	+	ENSMUST00000226969.1,ENSMUSG00000115103.1	Gm49263	ENSMUSG00000115103.1	ENSMUST00000226969.1	lincRNA	chr15:36723647-36725236
chr15	36796469	36796932	+	RMER1B	Other	Other	chr15	36796928	36796930	-	ENSMUST00000226851.1,ENSMUSG00000022285.17	Ywhaz	ENSMUSG00000022285.17	ENSMUST00000226851.1	protein_coding	chr15:36775500-36796929
chr15	36796469	36796932	+	RMER1B	Other	Other	chr15	36796928	36796930	-	ENSMUST00000227067.1,ENSMUSG00000022285.17	Ywhaz	ENSMUSG00000022285.17	ENSMUST00000227067.1	protein_coding	chr15:36793539-36796929
chr15	36798670	36798774	+	B1_Mur2	SINE	Alu	chr15	36798770	36798772	-	ENSMUST00000175280.1,ENSMUSG00000093021.1	Gm25303	ENSMUSG00000093021.1	ENSMUST00000175280.1	miRNA	chr15:36798698-36798771
chr15	36931532	36931760	+	ORR1B2	LTR	ERVL-MaLR	chr15	36931685	36931687	-	ENSMUST00000227301.1,ENSMUSG00000115430.1	Gm41300	ENSMUSG00000115430.1	ENSMUST00000227301.1	lincRNA	chr15:36906611-36931686
chr15	37285593	37285625	+	(T)n	Simple_repeat	Simple_repeat	chr15	37285592	37285594	+	ENSMUST00000228589.1,ENSMUSG00000022286.16	Grhl2	ENSMUSG00000022286.16	ENSMUST00000228589.1	protein_coding	chr15:37285593-37288912
chr15	37371298	37371476	+	MER53	DNA	hAT	chr15	37371446	37371448	-	ENSMUST00000116758.1,ENSMUSG00000080408.1	Gm23654	ENSMUSG00000080408.1	ENSMUST00000116758.1	miRNA	chr15:37371322-37371447
chr15	37561803	37561897	+	PB1D10	SINE	Alu	chr15	37561829	37561831	-	ENSMUST00000228636.1,ENSMUSG00000115095.1	Gm49311	ENSMUSG00000115095.1	ENSMUST00000228636.1	TEC	chr15:37559026-37561830
chr15	37948125	37949109	+	MTD-int	LTR	ERVL-MaLR	chr15	37948441	37948443	-	ENSMUST00000227688.1,ENSMUSG00000022292.16	Rrm2b	ENSMUSG00000022292.16	ENSMUST00000227688.1	protein_coding	chr15:37945629-37948442
chr15	38254776	38255572	-	Lx9	LINE	L1	chr15	38255309	38255311	-	ENSMUST00000227099.1,ENSMUSG00000115307.1	Gm49313	ENSMUSG00000115307.1	ENSMUST00000227099.1	lincRNA	chr15:38239702-38255310
chr15	38276441	38276461	-	B2_Mm2	SINE	B2	chr15	38276440	38276442	-	ENSMUST00000228508.1,ENSMUSG00000115437.1	Gm49314	ENSMUSG00000115437.1	ENSMUST00000228508.1	TEC	chr15:38275400-38276441
chr15	38404116	38404230	+	MERVK26-int	LTR	ERVK	chr15	38404153	38404155	-	ENSMUST00000227422.1,ENSMUSG00000115405.1	Gm41307	ENSMUSG00000115405.1	ENSMUST00000227422.1	lincRNA	chr15:38385634-38404154
chr15	38574220	38575194	-	RMER17B	LTR	ERVK	chr15	38574823	38574825	-	ENSMUST00000227913.1,ENSMUSG00000114975.1	Gm49090	ENSMUSG00000114975.1	ENSMUST00000227913.1	processed_pseudogene	chr15:38574719-38574824
chr15	38659573	38660096	-	MTE-int	LTR	ERVL-MaLR	chr15	38659838	38659840	-	ENSMUST00000228411.1,ENSMUSG00000115547.1	1100001I12Rik	ENSMUSG00000115547.1	ENSMUST00000228411.1	lincRNA	chr15:38640943-38659839
chr15	38728438	38728893	+	MLT2B2	LTR	ERVL	chr15	38728515	38728517	-	ENSMUST00000226763.1,ENSMUSG00000115620.1	Gm45924	ENSMUSG00000115620.1	ENSMUST00000226763.1	lincRNA	chr15:38713483-38728516
chr15	39006184	39006247	+	GC_rich	Low_complexity	Low_complexity	chr15	39006184	39006186	-	ENSMUST00000181362.2,ENSMUSG00000097875.2	Gm26704	ENSMUSG00000097875.2	ENSMUST00000181362.2	bidirectional_promoter_lncRNA	chr15:39003285-39006185
chr15	39083637	39084215	+	Lx8b	LINE	L1	chr15	39084069	39084071	+	ENSMUST00000144800.1,ENSMUSG00000054196.7	Cthrc1	ENSMUSG00000054196.7	ENSMUST00000144800.1	protein_coding	chr15:39084070-39087121
chr15	39132085	39132425	-	RLTRETN_Mm	LTR	ERVK	chr15	39132252	39132254	+	ENSMUST00000226224.1,ENSMUSG00000022300.10	Dcaf13	ENSMUSG00000022300.10	ENSMUST00000226224.1	protein_coding	chr15:39132253-39146853
chr15	39146384	39146487	-	5S	rRNA	rRNA	chr15	39146486	39146488	-	ENSMUST00000122613.1,ENSMUSG00000084562.1	n-R5s39	ENSMUSG00000084562.1	ENSMUST00000122613.1	rRNA	chr15:39146380-39146487
chr15	39943775	39943833	+	GC_rich	Low_complexity	Low_complexity	chr15	39943787	39943789	-	ENSMUST00000022916.12,ENSMUSG00000022305.13	Lrp12	ENSMUSG00000022305.13	ENSMUST00000022916.12	protein_coding	chr15:39870589-39943788
chr15	39991641	39991896	+	RMER13B	LTR	ERVK	chr15	39991663	39991665	-	ENSMUST00000226734.1,ENSMUSG00000115152.1	Gm49253	ENSMUSG00000115152.1	ENSMUST00000226734.1	processed_pseudogene	chr15:39991199-39991664
chr15	40043126	40043437	-	RLTR11A	LTR	ERVK	chr15	40043133	40043135	-	ENSMUST00000226568.1,ENSMUSG00000115712.1	Gm49255	ENSMUSG00000115712.1	ENSMUST00000226568.1	processed_pseudogene	chr15:40042982-40043134
chr15	40134297	40134592	+	ORR1D2	LTR	ERVL-MaLR	chr15	40134364	40134366	+	ENSMUST00000228780.1,ENSMUSG00000094112.2	9330182O14Rik	ENSMUSG00000094112.2	ENSMUST00000228780.1	protein_coding	chr15:40134365-40150010
chr15	40162421	40163051	+	RLTR17	LTR	ERVK	chr15	40162580	40162582	+	ENSMUST00000226809.1,ENSMUSG00000115367.1	Gm33301	ENSMUSG00000115367.1	ENSMUST00000226809.1	lincRNA	chr15:40162581-40167719
chr15	40162421	40163051	+	RLTR17	LTR	ERVK	chr15	40162606	40162608	+	ENSMUST00000228503.1,ENSMUSG00000115367.1	Gm33301	ENSMUSG00000115367.1	ENSMUST00000228503.1	lincRNA	chr15:40162607-40168076
chr15	40185815	40186421	-	Lx5b	LINE	L1	chr15	40186098	40186100	-	ENSMUST00000175114.1,ENSMUSG00000092855.1	Gm25958	ENSMUSG00000092855.1	ENSMUST00000175114.1	miRNA	chr15:40186029-40186099
chr15	40343027	40343533	-	RMER1B	Other	Other	chr15	40343259	40343261	+	ENSMUST00000226247.1,ENSMUSG00000115820.1	Gm41311	ENSMUSG00000115820.1	ENSMUST00000226247.1	lincRNA	chr15:40343260-40393307
chr15	40527097	40527581	-	Lx6	LINE	L1	chr15	40527276	40527278	-	ENSMUST00000070382.4,ENSMUSG00000056332.4	Gm16294	ENSMUSG00000056332.4	ENSMUST00000070382.4	lincRNA	chr15:40511322-40527277
chr15	42067444	42067835	-	RLTR10A	LTR	ERVK	chr15	42067552	42067554	-	ENSMUST00000229247.1,ENSMUSG00000115986.1	Gm49439	ENSMUSG00000115986.1	ENSMUST00000229247.1	lincRNA	chr15:42041425-42067553
chr15	42067444	42067835	-	RLTR10A	LTR	ERVK	chr15	42067545	42067547	-	ENSMUST00000229653.1,ENSMUSG00000115986.1	Gm49439	ENSMUSG00000115986.1	ENSMUST00000229653.1	lincRNA	chr15:42056876-42067546
chr15	42196616	42196908	+	IAPLTR4	LTR	ERVK	chr15	42196783	42196785	+	ENSMUST00000230284.1,ENSMUSG00000115988.1	Gm49441	ENSMUSG00000115988.1	ENSMUST00000230284.1	lincRNA	chr15:42196784-42201302
chr15	42256778	42257005	+	Lx5	LINE	L1	chr15	42256779	42256781	-	ENSMUST00000230056.1,ENSMUSG00000115985.1	Gm18531	ENSMUSG00000115985.1	ENSMUST00000230056.1	processed_pseudogene	chr15:42256063-42256780
chr15	43279719	43279864	+	B1_Mm	SINE	Alu	chr15	43279781	43279783	-	ENSMUST00000228892.1,ENSMUSG00000022336.3	Eif3e	ENSMUSG00000022336.3	ENSMUST00000228892.1	protein_coding	chr15:43250174-43279782
chr15	43377497	43377891	-	MTA_Mm	LTR	ERVL-MaLR	chr15	43377672	43377674	-	ENSMUST00000227040.1,ENSMUSG00000115635.1	Gm49271	ENSMUSG00000115635.1	ENSMUST00000227040.1	lincRNA	chr15:43368915-43377673
chr15	44432594	44432701	+	U6	snRNA	snRNA	chr15	44432594	44432596	+	ENSMUST00000177971.1,ENSMUSG00000094551.1	Gm22392	ENSMUSG00000094551.1	ENSMUST00000177971.1	snRNA	chr15:44432595-44432701
chr15	44940541	44940596	+	U6	snRNA	snRNA	chr15	44940541	44940543	+	ENSMUST00000158512.1,ENSMUSG00000089137.1	Gm24768	ENSMUSG00000089137.1	ENSMUST00000158512.1	snRNA	chr15:44940542-44940635
chr15	46151700	46151804	-	U6	snRNA	snRNA	chr15	46151803	46151805	-	ENSMUST00000083378.1,ENSMUSG00000065312.1	Gm26063	ENSMUSG00000065312.1	ENSMUST00000083378.1	snRNA	chr15:46151698-46151804
chr15	46151804	46152341	+	Lx5c	LINE	L1	chr15	46151803	46151805	-	ENSMUST00000083378.1,ENSMUSG00000065312.1	Gm26063	ENSMUSG00000065312.1	ENSMUST00000083378.1	snRNA	chr15:46151698-46151804
chr15	46324444	46324660	+	MuLV-int	LTR	ERV1	chr15	46324558	46324560	+	ENSMUST00000187130.6,ENSMUSG00000099751.6	1700022A22Rik	ENSMUSG00000099751.6	ENSMUST00000187130.6	lincRNA	chr15:46324559-46373858
chr15	46324444	46324660	+	MuLV-int	LTR	ERV1	chr15	46324570	46324572	+	ENSMUST00000185294.6,ENSMUSG00000099751.6	1700022A22Rik	ENSMUSG00000099751.6	ENSMUST00000185294.6	lincRNA	chr15:46324571-46353977
chr15	46324444	46324660	+	MuLV-int	LTR	ERV1	chr15	46324584	46324586	+	ENSMUST00000189172.1,ENSMUSG00000099751.6	1700022A22Rik	ENSMUSG00000099751.6	ENSMUST00000189172.1	lincRNA	chr15:46324585-46373907
chr15	46434585	46435011	-	MTD	LTR	ERVL-MaLR	chr15	46434868	46434870	-	ENSMUST00000174902.1,ENSMUSG00000092643.1	Gm23562	ENSMUSG00000092643.1	ENSMUST00000174902.1	miRNA	chr15:46434808-46434869
chr15	46495494	46496261	+	RMER13A1	LTR	ERVK	chr15	46496180	46496182	-	ENSMUST00000227535.1,ENSMUSG00000115177.1	4930523O13Rik	ENSMUSG00000115177.1	ENSMUST00000227535.1	lincRNA	chr15:46435866-46496181
chr15	46495494	46496261	+	RMER13A1	LTR	ERVK	chr15	46496148	46496150	-	ENSMUST00000228201.1,ENSMUSG00000115177.1	4930523O13Rik	ENSMUSG00000115177.1	ENSMUST00000228201.1	lincRNA	chr15:46436227-46496149
chr15	46621562	46623444	-	ERVB5_1-I_MM-int	LTR	ERVK	chr15	46623304	46623306	+	ENSMUST00000190364.1,ENSMUSG00000051198.6	4930548G14Rik	ENSMUSG00000051198.6	ENSMUST00000190364.1	lincRNA	chr15:46623305-46639858
chr15	47615132	47615421	-	L1Md_F2	LINE	L1	chr15	47615200	47615202	-	ENSMUST00000162006.1,ENSMUSG00000022311.15	Csmd3	ENSMUSG00000022311.15	ENSMUST00000162006.1	protein_coding	chr15:47581726-47615201
chr15	47956705	47961720	-	L1_Mus2	LINE	L1	chr15	47961467	47961469	-	ENSMUST00000110261.1,ENSMUSG00000022311.15	Csmd3	ENSMUSG00000022311.15	ENSMUST00000110261.1	protein_coding	chr15:47947897-47961468
chr15	48551100	48551320	-	Lx	LINE	L1	chr15	48551307	48551309	+	ENSMUST00000083808.1,ENSMUSG00000065742.1	Gm25007	ENSMUSG00000065742.1	ENSMUST00000083808.1	snRNA	chr15:48551308-48551440
chr15	48906725	48906793	+	(TTTTG)n	Simple_repeat	Simple_repeat	chr15	48906735	48906737	-	ENSMUST00000158689.1,ENSMUSG00000089314.1	Gm23185	ENSMUSG00000089314.1	ENSMUST00000158689.1	snRNA	chr15:48906652-48906736
chr15	49193981	49194480	+	RLTR10C	LTR	ERVK	chr15	49194336	49194338	+	ENSMUST00000228245.1,ENSMUSG00000115775.1	Gm41318	ENSMUSG00000115775.1	ENSMUST00000228245.1	lincRNA	chr15:49194337-49203313
chr15	49538195	49538298	+	U6	snRNA	snRNA	chr15	49538194	49538196	+	ENSMUST00000083826.1,ENSMUSG00000065760.1	Gm23848	ENSMUSG00000065760.1	ENSMUST00000083826.1	snRNA	chr15:49538195-49538300
chr15	51896604	51897296	+	L1ME1	LINE	L1	chr15	51897040	51897042	-	ENSMUST00000227812.1,ENSMUSG00000115284.1	Gm34678	ENSMUSG00000115284.1	ENSMUST00000227812.1	antisense	chr15:51880470-51897041
chr15	51896604	51897296	+	L1ME1	LINE	L1	chr15	51897086	51897088	+	ENSMUST00000226818.1,ENSMUSG00000115616.1	Gm48923	ENSMUSG00000115616.1	ENSMUST00000226818.1	lincRNA	chr15:51897087-51899767
chr15	52496885	52496983	+	U6	snRNA	snRNA	chr15	52496884	52496886	+	ENSMUST00000158205.1,ENSMUSG00000088830.1	Gm23545	ENSMUSG00000088830.1	ENSMUST00000158205.1	snRNA	chr15:52496885-52496988
chr15	53107819	53107966	+	B1_Mm	SINE	Alu	chr15	53107867	53107869	-	ENSMUST00000140798.1,ENSMUSG00000061731.9	Ext1	ENSMUSG00000061731.9	ENSMUST00000140798.1	protein_coding	chr15:53089931-53107868
chr15	53383830	53384200	+	RLTR25A	LTR	ERVK	chr15	53383918	53383920	+	ENSMUST00000157180.2,ENSMUSG00000087805.2	Gm27926	ENSMUSG00000087805.2	ENSMUST00000157180.2	snRNA	chr15:53383919-53383984
chr15	53614194	53614328	+	L2c	LINE	L2	chr15	53614278	53614280	-	ENSMUST00000200096.1,ENSMUSG00000104794.1	Mir28c	ENSMUSG00000104794.1	ENSMUST00000200096.1	miRNA	chr15:53614205-53614279
chr15	54745658	54745716	+	(CA)n	Simple_repeat	Simple_repeat	chr15	54745701	54745703	+	ENSMUST00000050027.8,ENSMUSG00000037362.8	Nov	ENSMUSG00000037362.8	ENSMUST00000050027.8	protein_coding	chr15:54745702-54754039
chr15	54914709	54914851	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr15	54914717	54914719	-	ENSMUST00000227057.1,ENSMUSG00000022425.16	Enpp2	ENSMUSG00000022425.16	ENSMUST00000227057.1	protein_coding	chr15:54899276-54914718
chr15	55084506	55084655	+	L1MA9	LINE	L1	chr15	55084560	55084562	+	ENSMUST00000228250.1,ENSMUSG00000115657.1	Gm41325	ENSMUSG00000115657.1	ENSMUST00000228250.1	antisense	chr15:55084561-55097699
chr15	55133349	55133523	+	MER5A	DNA	hAT-Charlie	chr15	55133435	55133437	+	ENSMUST00000023056.7,ENSMUSG00000022419.16	Deptor	ENSMUSG00000022419.16	ENSMUST00000023056.7	protein_coding	chr15:55133436-55254202
chr15	55133349	55133523	+	MER5A	DNA	hAT-Charlie	chr15	55133452	55133454	+	ENSMUST00000226687.1,ENSMUSG00000022419.16	Deptor	ENSMUSG00000022419.16	ENSMUST00000226687.1	protein_coding	chr15:55133453-55208885
chr15	55576754	55577178	-	MTE2b	LTR	ERVL-MaLR	chr15	55576779	55576781	+	ENSMUST00000169667.1,ENSMUSG00000022369.13	Mtbp	ENSMUSG00000022369.13	ENSMUST00000169667.1	protein_coding	chr15:55576780-55626422
chr15	55923205	55923413	-	MIRb	SINE	MIR	chr15	55923401	55923403	+	ENSMUST00000227739.1,ENSMUSG00000115200.1	Gm46516	ENSMUSG00000115200.1	ENSMUST00000227739.1	lincRNA	chr15:55923402-55960906
chr15	55973597	55973801	+	G-rich	Low_complexity	Low_complexity	chr15	55973604	55973606	+	ENSMUST00000228166.1,ENSMUSG00000115651.1	Gm7595	ENSMUSG00000115651.1	ENSMUST00000228166.1	processed_pseudogene	chr15:55973605-55974505
chr15	57239006	57239113	-	U6	snRNA	snRNA	chr15	57239112	57239114	-	ENSMUST00000177706.1,ENSMUSG00000094730.1	Gm26178	ENSMUSG00000094730.1	ENSMUST00000177706.1	snRNA	chr15:57239007-57239113
chr15	57239113	57240760	-	L1_Mus1	LINE	L1	chr15	57239112	57239114	-	ENSMUST00000177706.1,ENSMUSG00000094730.1	Gm26178	ENSMUSG00000094730.1	ENSMUST00000177706.1	snRNA	chr15:57239007-57239113
chr15	57695698	57695734	+	GC_rich	Low_complexity	Low_complexity	chr15	57695728	57695730	+	ENSMUST00000160990.1,ENSMUSG00000071757.10	Zhx2	ENSMUSG00000071757.10	ENSMUST00000160990.1	protein_coding	chr15:57695729-57821110
chr15	57738639	57738714	+	(TG)n	Simple_repeat	Simple_repeat	chr15	57738665	57738667	-	ENSMUST00000176703.2,ENSMUSG00000047807.10	9330154K18Rik	ENSMUSG00000047807.10	ENSMUST00000176703.2	antisense	chr15:57736563-57738666
chr15	57913735	57913856	-	B4A	SINE	B4	chr15	57913854	57913856	+	ENSMUST00000160098.7,ENSMUSG00000022364.14	Tbc1d31	ENSMUSG00000022364.14	ENSMUST00000160098.7	protein_coding	chr15:57913855-57953904
chr15	58027811	58027919	+	MT2B	LTR	ERVL	chr15	58027894	58027896	-	ENSMUST00000187062.1,ENSMUSG00000101892.1	9130401M01Rik	ENSMUSG00000101892.1	ENSMUST00000187062.1	protein_coding	chr15:58022270-58027895
chr15	58027823	58027931	+	B4	SINE	B4	chr15	58027894	58027896	-	ENSMUST00000187062.1,ENSMUSG00000101892.1	9130401M01Rik	ENSMUSG00000101892.1	ENSMUST00000187062.1	protein_coding	chr15:58022270-58027895
chr15	58027839	58027950	+	B1_Mur2	SINE	Alu	chr15	58027894	58027896	-	ENSMUST00000187062.1,ENSMUSG00000101892.1	9130401M01Rik	ENSMUSG00000101892.1	ENSMUST00000187062.1	protein_coding	chr15:58022270-58027895
chr15	58027857	58027984	-	B1F1	SINE	Alu	chr15	58027894	58027896	-	ENSMUST00000187062.1,ENSMUSG00000101892.1	9130401M01Rik	ENSMUSG00000101892.1	ENSMUST00000187062.1	protein_coding	chr15:58022270-58027895
chr15	58112137	58112164	+	(A)n	Simple_repeat	Simple_repeat	chr15	58112157	58112159	-	ENSMUST00000226507.1,ENSMUSG00000022360.8	Atad2	ENSMUSG00000022360.8	ENSMUST00000226507.1	protein_coding	chr15:58108255-58112158
chr15	58128920	58129149	+	ORR1B1	LTR	ERVL-MaLR	chr15	58129010	58129012	-	ENSMUST00000226582.1,ENSMUSG00000022360.8	Atad2	ENSMUSG00000022360.8	ENSMUST00000226582.1	protein_coding	chr15:58126965-58129011
chr15	58133251	58133363	-	B1_Mus2	SINE	Alu	chr15	58133291	58133293	-	ENSMUST00000227171.1,ENSMUSG00000022360.8	Atad2	ENSMUSG00000022360.8	ENSMUST00000227171.1	protein_coding	chr15:58131152-58133292
chr15	58142893	58143437	-	RLTR25B	LTR	ERVK	chr15	58143268	58143270	-	ENSMUST00000158879.1,ENSMUSG00000089504.1	Gm23475	ENSMUSG00000089504.1	ENSMUST00000158879.1	snRNA	chr15:58143208-58143269
chr15	58214923	58214949	+	GC_rich	Low_complexity	Low_complexity	chr15	58214931	58214933	-	ENSMUST00000022986.7,ENSMUSG00000022358.7	Fbxo32	ENSMUSG00000022358.7	ENSMUST00000022986.7	protein_coding	chr15:58175879-58214932
chr15	58405735	58405864	-	ID_B1	SINE	B4	chr15	58405823	58405825	+	ENSMUST00000227769.1,ENSMUSG00000115576.1	Gm2675	ENSMUSG00000115576.1	ENSMUST00000227769.1	lincRNA	chr15:58405824-58411326
chr15	58565613	58565839	+	7SK	RNA	RNA	chr15	58565613	58565615	+	ENSMUST00000122536.1,ENSMUSG00000084485.1	Gm23789	ENSMUSG00000084485.1	ENSMUST00000122536.1	misc_RNA	chr15:58565614-58565914
chr15	58781820	58782059	+	Lx8b	LINE	L1	chr15	58781950	58781952	-	ENSMUST00000176387.1,ENSMUSG00000093677.1	Gm20712	ENSMUSG00000093677.1	ENSMUST00000176387.1	sense_overlapping	chr15:58780461-58781951
chr15	58889231	58889305	+	C-rich	Low_complexity	Low_complexity	chr15	58889297	58889299	+	ENSMUST00000228787.1,ENSMUSG00000115463.1	Gm49356	ENSMUSG00000115463.1	ENSMUST00000228787.1	protein_coding	chr15:58889298-58937359
chr15	59325468	59325632	-	B3	SINE	B2	chr15	59325542	59325544	+	ENSMUST00000161953.1,ENSMUSG00000022351.14	Sqle	ENSMUSG00000022351.14	ENSMUST00000161953.1	protein_coding	chr15:59325543-59327199
chr15	59618513	59618721	-	MTEb	LTR	ERVL-MaLR	chr15	59618589	59618591	+	ENSMUST00000229684.1,ENSMUSG00000115896.1	Gm36677	ENSMUSG00000115896.1	ENSMUST00000229684.1	lincRNA	chr15:59618590-59619055
chr15	60084788	60084888	+	U6	snRNA	snRNA	chr15	60084787	60084789	+	ENSMUST00000104323.1,ENSMUSG00000077511.1	Gm25875	ENSMUSG00000077511.1	ENSMUST00000104323.1	snRNA	chr15:60084788-60084894
chr15	60164377	60164547	+	Lx8	LINE	L1	chr15	60164456	60164458	-	ENSMUST00000226736.1,ENSMUSG00000115681.1	Gm2682	ENSMUSG00000115681.1	ENSMUST00000226736.1	lincRNA	chr15:60145034-60164457
chr15	60670148	60670597	+	RLTR20B2	LTR	ERVK	chr15	60670342	60670344	+	ENSMUST00000226738.1,ENSMUSG00000115504.1	Gm48946	ENSMUSG00000115504.1	ENSMUST00000226738.1	lincRNA	chr15:60670343-60672084
chr15	60704123	60704255	-	L1MB3	LINE	L1	chr15	60704122	60704124	-	ENSMUST00000104439.1,ENSMUSG00000077627.1	Gm23835	ENSMUSG00000077627.1	ENSMUST00000104439.1	snoRNA	chr15:60703992-60704123
chr15	60922842	60923228	-	MLT1C	LTR	ERVL-MaLR	chr15	60923011	60923013	-	ENSMUST00000228632.1,ENSMUSG00000022347.8	A1bg	ENSMUSG00000022347.8	ENSMUST00000228632.1	protein_coding	chr15:60919675-60923012
chr15	61283186	61289352	-	L1Md_F2	LINE	L1	chr15	61288440	61288442	+	ENSMUST00000230678.1,ENSMUSG00000116299.1	Gm29904	ENSMUSG00000116299.1	ENSMUST00000230678.1	lincRNA	chr15:61288441-61331370
chr15	61283186	61289352	-	L1Md_F2	LINE	L1	chr15	61288629	61288631	+	ENSMUST00000229323.1,ENSMUSG00000116299.1	Gm29904	ENSMUSG00000116299.1	ENSMUST00000229323.1	lincRNA	chr15:61288630-61393822
chr15	61357962	61358117	-	B4	SINE	B4	chr15	61358003	61358005	-	ENSMUST00000083878.1,ENSMUSG00000065812.1	Gm24696	ENSMUSG00000065812.1	ENSMUST00000083878.1	snoRNA	chr15:61357871-61358004
chr15	61745154	61745362	-	ID_B1	SINE	B4	chr15	61745183	61745185	-	ENSMUST00000229538.1,ENSMUSG00000116031.1	D030024E09Rik	ENSMUSG00000116031.1	ENSMUST00000229538.1	lincRNA	chr15:61534676-61745184
chr15	62652968	62653919	+	Lx2	LINE	L1	chr15	62653003	62653005	-	ENSMUST00000175317.1,ENSMUSG00000093058.1	Gm24810	ENSMUSG00000093058.1	ENSMUST00000175317.1	miRNA	chr15:62652935-62653004
chr15	63481240	63482109	-	RLTR25A	LTR	ERVK	chr15	63481275	63481277	-	ENSMUST00000158203.1,ENSMUSG00000095939.1	Gm25702	ENSMUSG00000095939.1	ENSMUST00000158203.1	snRNA	chr15:63481214-63481276
chr15	63844940	63845520	-	MT2B	LTR	ERVL	chr15	63845176	63845178	-	ENSMUST00000188404.6,ENSMUSG00000056293.12	Gsdmc2	ENSMUSG00000056293.12	ENSMUST00000188404.6	protein_coding	chr15:63824346-63845177
chr15	63844940	63845520	-	MT2B	LTR	ERVL	chr15	63845161	63845163	-	ENSMUST00000188691.1,ENSMUSG00000056293.12	Gsdmc2	ENSMUSG00000056293.12	ENSMUST00000188691.1	protein_coding	chr15:63824482-63845162
chr15	63877572	63877924	-	MTC	LTR	ERVL-MaLR	chr15	63877719	63877721	-	ENSMUST00000185526.6,ENSMUSG00000055827.13	Gsdmc3	ENSMUSG00000055827.13	ENSMUST00000185526.6	protein_coding	chr15:63857724-63877720
chr15	63878322	63878902	-	MT2B	LTR	ERVL	chr15	63878557	63878559	-	ENSMUST00000190682.6,ENSMUSG00000055827.13	Gsdmc3	ENSMUSG00000055827.13	ENSMUST00000190682.6	protein_coding	chr15:63857727-63878558
chr15	63912061	63912636	-	MT2B	LTR	ERVL	chr15	63912296	63912298	-	ENSMUST00000188108.6,ENSMUSG00000055748.12	Gsdmc4	ENSMUSG00000055748.12	ENSMUST00000188108.6	protein_coding	chr15:63891264-63912297
chr15	63997966	63998005	+	GC_rich	Low_complexity	Low_complexity	chr15	63997968	63997970	-	ENSMUST00000164532.2,ENSMUSG00000022378.14	Fam49b	ENSMUSG00000022378.14	ENSMUST00000164532.2	protein_coding	chr15:63930942-63997969
chr15	64025946	64026052	+	U6	snRNA	snRNA	chr15	64025947	64025949	+	ENSMUST00000084002.1,ENSMUSG00000065936.1	Gm25628	ENSMUSG00000065936.1	ENSMUST00000084002.1	snRNA	chr15:64025948-64026052
chr15	64060309	64060355	+	(CAG)n	Simple_repeat	Simple_repeat	chr15	64060342	64060344	-	ENSMUST00000228226.1,ENSMUSG00000022378.14	Fam49b	ENSMUSG00000022378.14	ENSMUST00000228226.1	protein_coding	chr15:63930944-64060343
chr15	64060309	64060355	+	(CAG)n	Simple_repeat	Simple_repeat	chr15	64060329	64060331	-	ENSMUST00000226675.1,ENSMUSG00000022378.14	Fam49b	ENSMUSG00000022378.14	ENSMUST00000226675.1	protein_coding	chr15:63944394-64060330
chr15	64060467	64060558	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr15	64060477	64060479	-	ENSMUST00000228908.1,ENSMUSG00000022378.14	Fam49b	ENSMUSG00000022378.14	ENSMUST00000228908.1	protein_coding	chr15:63939706-64060478
chr15	64382752	64382809	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr15	64382755	64382757	-	ENSMUST00000175799.7,ENSMUSG00000022377.16	Asap1	ENSMUSG00000022377.16	ENSMUST00000175799.7	protein_coding	chr15:64088541-64382756
chr15	65694548	65694625	+	U2	snRNA	snRNA	chr15	65694548	65694550	+	ENSMUST00000104595.1,ENSMUSG00000077783.1	Gm23907	ENSMUSG00000077783.1	ENSMUST00000104595.1	snRNA	chr15:65694549-65694737
chr15	66103044	66103377	-	ORR1B1	LTR	ERVL-MaLR	chr15	66103253	66103255	-	ENSMUST00000183354.1,ENSMUSG00000056258.9	Kcnq3	ENSMUSG00000056258.9	ENSMUST00000183354.1	protein_coding	chr15:66025116-66103254
chr15	66577589	66577652	+	(CGG)n	Simple_repeat	Simple_repeat	chr15	66577604	66577606	+	ENSMUST00000229590.1,ENSMUSG00000072501.5	Phf20l1	ENSMUSG00000072501.5	ENSMUST00000229590.1	protein_coding	chr15:66577605-66618225
chr15	66803690	66803784	+	G-rich	Low_complexity	Low_complexity	chr15	66803748	66803750	-	ENSMUST00000164939.1,ENSMUSG00000022372.14	Sla	ENSMUSG00000022372.14	ENSMUST00000164939.1	protein_coding	chr15:66785720-66803749
chr15	68326325	68326368	+	(A)n	Simple_repeat	Simple_repeat	chr15	68326332	68326334	-	ENSMUST00000192781.1,ENSMUSG00000104324.1	Gm37320	ENSMUSG00000104324.1	ENSMUST00000192781.1	TEC	chr15:68321381-68326333
chr15	68671415	68671522	+	U6	snRNA	snRNA	chr15	68671415	68671417	+	ENSMUST00000083234.1,ENSMUSG00000096689.1	Gm25987	ENSMUSG00000096689.1	ENSMUST00000083234.1	snRNA	chr15:68671416-68671522
chr15	68928315	68928464	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr15	68928419	68928421	+	ENSMUST00000022954.6,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000022954.6	protein_coding	chr15:68928420-69093512
chr15	68928315	68928464	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr15	68928431	68928433	+	ENSMUST00000229683.1,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000229683.1	protein_coding	chr15:68928432-69101211
chr15	68928354	68928448	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr15	68928419	68928421	+	ENSMUST00000022954.6,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000022954.6	protein_coding	chr15:68928420-69093512
chr15	68928354	68928448	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr15	68928431	68928433	+	ENSMUST00000229683.1,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000229683.1	protein_coding	chr15:68928432-69101211
chr15	68928578	68928742	+	GC_rich	Low_complexity	Low_complexity	chr15	68928696	68928698	+	ENSMUST00000230847.1,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000230847.1	protein_coding	chr15:68928697-69093510
chr15	68928578	68928742	+	GC_rich	Low_complexity	Low_complexity	chr15	68928712	68928714	+	ENSMUST00000229534.1,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000229534.1	protein_coding	chr15:68928713-68995618
chr15	68928578	68928742	+	GC_rich	Low_complexity	Low_complexity	chr15	68928720	68928722	+	ENSMUST00000229234.1,ENSMUSG00000022332.8	Khdrbs3	ENSMUSG00000022332.8	ENSMUST00000229234.1	protein_coding	chr15:68928721-69101211
chr15	69266106	69271303	-	L1Md_F2	LINE	L1	chr15	69270532	69270534	+	ENSMUST00000231164.1,ENSMUSG00000116167.1	4930504C09Rik	ENSMUSG00000116167.1	ENSMUST00000231164.1	lincRNA	chr15:69270533-69274720
chr15	69451146	69451196	+	AT_rich	Low_complexity	Low_complexity	chr15	69451145	69451147	-	ENSMUST00000104314.1,ENSMUSG00000077502.1	Gm24232	ENSMUSG00000077502.1	ENSMUST00000104314.1	snoRNA	chr15:69451015-69451146
chr15	72255349	72255456	-	U6	snRNA	snRNA	chr15	72255455	72255457	-	ENSMUST00000178482.1,ENSMUSG00000095129.1	Gm23217	ENSMUSG00000095129.1	ENSMUST00000178482.1	snRNA	chr15:72255350-72255456
chr15	72255456	72255883	-	L1_Mus3	LINE	L1	chr15	72255455	72255457	-	ENSMUST00000178482.1,ENSMUSG00000095129.1	Gm23217	ENSMUSG00000095129.1	ENSMUST00000178482.1	snRNA	chr15:72255350-72255456
chr15	72490995	72491329	-	RLTR25B	LTR	ERVK	chr15	72491018	72491020	-	ENSMUST00000179578.1,ENSMUSG00000095149.1	Gm24390	ENSMUSG00000095149.1	ENSMUST00000179578.1	snRNA	chr15:72490958-72491019
chr15	72721066	72722117	-	RLTR25B	LTR	ERVK	chr15	72721386	72721388	-	ENSMUST00000157739.2,ENSMUSG00000088364.2	Gm28020	ENSMUSG00000088364.2	ENSMUST00000157739.2	snRNA	chr15:72721321-72721387
chr15	73061126	73061300	+	GA-rich	Low_complexity	Low_complexity	chr15	73061203	73061205	-	ENSMUST00000089770.10,ENSMUSG00000047921.16	Trappc9	ENSMUSG00000047921.16	ENSMUST00000089770.10	protein_coding	chr15:72589620-73061204
chr15	73061126	73061300	+	GA-rich	Low_complexity	Low_complexity	chr15	73061203	73061205	-	ENSMUST00000168191.1,ENSMUSG00000047921.16	Trappc9	ENSMUSG00000047921.16	ENSMUST00000168191.1	protein_coding	chr15:72852169-73061204
chr15	73249406	73249594	+	URR1A	DNA	hAT-Charlie	chr15	73249545	73249547	+	ENSMUST00000228696.1,ENSMUSG00000115693.1	1700085D07Rik	ENSMUSG00000115693.1	ENSMUST00000228696.1	antisense	chr15:73249546-73264120
chr15	73254854	73254920	+	L2c	LINE	L2	chr15	73254881	73254883	-	ENSMUST00000083678.1,ENSMUSG00000065612.1	Mir151	ENSMUSG00000065612.1	ENSMUST00000083678.1	miRNA	chr15:73254815-73254882
chr15	73724859	73724941	+	GC_rich	Low_complexity	Low_complexity	chr15	73724929	73724931	+	ENSMUST00000163582.8,ENSMUSG00000059895.13	Ptp4a3	ENSMUSG00000059895.13	ENSMUST00000163582.8	protein_coding	chr15:73724930-73757228
chr15	73748354	73748435	+	GC_rich	Low_complexity	Low_complexity	chr15	73748373	73748375	+	ENSMUST00000053232.7,ENSMUSG00000059895.13	Ptp4a3	ENSMUSG00000059895.13	ENSMUST00000053232.7	protein_coding	chr15:73748374-73758766
chr15	73833978	73834832	+	L1MB1	LINE	L1	chr15	73834560	73834562	+	ENSMUST00000154520.1,ENSMUSG00000086361.1	Gm6569	ENSMUSG00000086361.1	ENSMUST00000154520.1	protein_coding	chr15:73834561-73839908
chr15	74563642	74563879	+	GC_rich	Low_complexity	Low_complexity	chr15	74563791	74563793	+	ENSMUST00000185682.6,ENSMUSG00000034730.17	Adgrb1	ENSMUSG00000034730.17	ENSMUST00000185682.6	protein_coding	chr15:74563792-74589464
chr15	74563642	74563879	+	GC_rich	Low_complexity	Low_complexity	chr15	74563852	74563854	+	ENSMUST00000170845.7,ENSMUSG00000034730.17	Adgrb1	ENSMUSG00000034730.17	ENSMUST00000170845.7	protein_coding	chr15:74563853-74589443
chr15	74563642	74563879	+	GC_rich	Low_complexity	Low_complexity	chr15	74563820	74563822	+	ENSMUST00000175599.1,ENSMUSG00000093340.1	Gm26117	ENSMUSG00000093340.1	ENSMUST00000175599.1	miRNA	chr15:74563821-74563915
chr15	74563884	74563904	+	(CCGGG)n	Simple_repeat	Simple_repeat	chr15	74563900	74563902	+	ENSMUST00000187599.1,ENSMUSG00000034730.17	Adgrb1	ENSMUSG00000034730.17	ENSMUST00000187599.1	protein_coding	chr15:74563901-74572861
chr15	74896883	74897223	-	MTD	LTR	ERVL-MaLR	chr15	74897020	74897022	-	ENSMUST00000190826.1,ENSMUSG00000063522.5	2010109I03Rik	ENSMUSG00000063522.5	ENSMUST00000190826.1	protein_coding	chr15:74876987-74897021
chr15	74929383	74929859	+	RMER19C	LTR	ERVK	chr15	74929436	74929438	+	ENSMUST00000230877.1,ENSMUSG00000116380.1	Gm39556	ENSMUSG00000116380.1	ENSMUST00000230877.1	lincRNA	chr15:74929437-74936316
chr15	75078872	75079289	-	BGLII	LTR	ERVK	chr15	75079093	75079095	-	ENSMUST00000189781.1,ENSMUSG00000099452.1	Gm28502	ENSMUSG00000099452.1	ENSMUST00000189781.1	lincRNA	chr15:75076210-75079094
chr15	75635906	75635961	+	(TTGG)n	Simple_repeat	Simple_repeat	chr15	75635909	75635911	-	ENSMUST00000229763.1,ENSMUSG00000115969.1	Gm46519	ENSMUSG00000115969.1	ENSMUST00000229763.1	lincRNA	chr15:75631969-75635910
chr15	75712537	75712645	+	PB1D10	SINE	Alu	chr15	75712587	75712589	+	ENSMUST00000229670.1,ENSMUSG00000022580.13	Rhpn1	ENSMUSG00000022580.13	ENSMUST00000229670.1	protein_coding	chr15:75712588-75713474
chr15	75909701	75909749	+	GC_rich	Low_complexity	Low_complexity	chr15	75909734	75909736	+	ENSMUST00000192937.1,ENSMUSG00000103906.1	Tigd5	ENSMUSG00000103906.1	ENSMUST00000192937.1	protein_coding	chr15:75909735-75914535
chr15	75926543	75926691	-	B1_Mus1	SINE	Alu	chr15	75926551	75926553	-	ENSMUST00000230454.1,ENSMUSG00000022570.7	Tsta3	ENSMUSG00000022570.7	ENSMUST00000230454.1	protein_coding	chr15:75925307-75926552
chr15	75972350	75972393	+	(TTTA)n	Simple_repeat	Simple_repeat	chr15	75972383	75972385	+	ENSMUST00000229652.1,ENSMUSG00000034429.15	Zfp707	ENSMUSG00000034429.15	ENSMUST00000229652.1	protein_coding	chr15:75972384-75975734
chr15	75972719	75972854	-	B1_Mus1	SINE	Alu	chr15	75972782	75972784	+	ENSMUST00000156444.1,ENSMUSG00000034429.15	Zfp707	ENSMUSG00000034429.15	ENSMUST00000156444.1	protein_coding	chr15:75972783-75973950
chr15	76009441	76009544	+	C-rich	Low_complexity	Low_complexity	chr15	76009497	76009499	-	ENSMUST00000170153.1,ENSMUSG00000046761.12	Fam83h	ENSMUSG00000046761.12	ENSMUST00000170153.1	protein_coding	chr15:76001093-76009498
chr15	76036458	76036617	+	U1	snRNA	snRNA	chr15	76036458	76036460	+	ENSMUST00000158771.1,ENSMUSG00000089396.1	Gm23027	ENSMUSG00000089396.1	ENSMUST00000158771.1	snRNA	chr15:76036459-76036616
chr15	76036622	76036756	+	GA-rich	Low_complexity	Low_complexity	chr15	76036645	76036647	+	ENSMUST00000187060.1,ENSMUSG00000102018.8	K230010J24Rik	ENSMUSG00000102018.8	ENSMUST00000187060.1	protein_coding	chr15:76036646-76037905
chr15	76083670	76083879	+	HAL1	LINE	L1	chr15	76083763	76083765	+	ENSMUST00000227033.1,ENSMUSG00000115332.1	Gm48952	ENSMUSG00000115332.1	ENSMUST00000227033.1	lincRNA	chr15:76083764-76087655
chr15	76091420	76091559	+	C-rich	Low_complexity	Low_complexity	chr15	76091504	76091506	-	ENSMUST00000227605.1,ENSMUSG00000075590.4	Nrbp2	ENSMUSG00000075590.4	ENSMUST00000227605.1	protein_coding	chr15:76085518-76091505
chr15	76095429	76095602	-	B3	SINE	B2	chr15	76095574	76095576	+	ENSMUST00000229255.1,ENSMUSG00000116288.1	Gm41349	ENSMUSG00000116288.1	ENSMUST00000229255.1	lincRNA	chr15:76095575-76097668
chr15	76234242	76234393	+	HAL1ME	LINE	L1	chr15	76234252	76234254	-	ENSMUST00000169255.1,ENSMUSG00000063268.12	Parp10	ENSMUSG00000063268.12	ENSMUST00000169255.1	protein_coding	chr15:76233390-76234253
chr15	76234413	76234633	+	ID_B1	SINE	B4	chr15	76234472	76234474	-	ENSMUST00000170851.1,ENSMUSG00000063268.12	Parp10	ENSMUSG00000063268.12	ENSMUST00000170851.1	protein_coding	chr15:76233739-76234473
chr15	76269790	76269986	+	ID_B1	SINE	B4	chr15	76269838	76269840	-	ENSMUST00000231521.1,ENSMUSG00000115946.2	Mirt2	ENSMUSG00000115946.2	ENSMUST00000231521.1	antisense	chr15:76266461-76269839
chr15	76290905	76291030	-	RMER13A	LTR	ERVK	chr15	76290967	76290969	-	ENSMUST00000175428.1,ENSMUSG00000093169.1	Mir3079	ENSMUSG00000093169.1	ENSMUST00000175428.1	miRNA	chr15:76290879-76290968
chr15	76380536	76380569	+	GC_rich	Low_complexity	Low_complexity	chr15	76380552	76380554	+	ENSMUST00000162319.7,ENSMUSG00000022558.16	Mroh1	ENSMUSG00000022558.16	ENSMUST00000162319.7	protein_coding	chr15:76380553-76409580
chr15	76441036	76441065	+	(T)n	Simple_repeat	Simple_repeat	chr15	76441044	76441046	+	ENSMUST00000161962.1,ENSMUSG00000022558.16	Mroh1	ENSMUSG00000022558.16	ENSMUST00000161962.1	protein_coding	chr15:76441045-76446832
chr15	76449555	76449699	-	B1_Mus2	SINE	Alu	chr15	76449654	76449656	+	ENSMUST00000160806.1,ENSMUSG00000022558.16	Mroh1	ENSMUSG00000022558.16	ENSMUST00000160806.1	protein_coding	chr15:76449655-76451220
chr15	76521898	76521997	+	CT-rich	Low_complexity	Low_complexity	chr15	76521901	76521903	-	ENSMUST00000164703.1,ENSMUSG00000048385.9	Scrt1	ENSMUSG00000048385.9	ENSMUST00000164703.1	protein_coding	chr15:76516213-76521902
chr15	76522469	76522515	+	G-rich	Low_complexity	Low_complexity	chr15	76522498	76522500	-	ENSMUST00000096365.4,ENSMUSG00000048385.9	Scrt1	ENSMUSG00000048385.9	ENSMUST00000096365.4	protein_coding	chr15:76516203-76522499
chr15	76584447	76584558	+	PB1D9	SINE	Alu	chr15	76584523	76584525	+	ENSMUST00000229007.1,ENSMUSG00000022550.18	Adck5	ENSMUSG00000022550.18	ENSMUST00000229007.1	protein_coding	chr15:76584524-76595816
chr15	76633471	76633686	+	MER50B	LTR	ERV1	chr15	76633675	76633677	-	ENSMUST00000171478.1,ENSMUSG00000059323.14	Tonsl	ENSMUSG00000059323.14	ENSMUST00000171478.1	protein_coding	chr15:76632773-76633676
chr15	76656572	76656761	+	GC_rich	Low_complexity	Low_complexity	chr15	76656715	76656717	-	ENSMUST00000229524.1,ENSMUSG00000053929.17	Cyhr1	ENSMUSG00000053929.17	ENSMUST00000229524.1	protein_coding	chr15:76646991-76656716
chr15	76656572	76656761	+	GC_rich	Low_complexity	Low_complexity	chr15	76656715	76656717	-	ENSMUST00000229541.1,ENSMUSG00000053929.17	Cyhr1	ENSMUSG00000053929.17	ENSMUST00000229541.1	protein_coding	chr15:76649036-76656716
chr15	76660057	76660089	-	ID_B1	SINE	B4	chr15	76660060	76660062	-	ENSMUST00000081291.12,ENSMUSG00000053929.17	Cyhr1	ENSMUSG00000053929.17	ENSMUST00000081291.12	protein_coding	chr15:76643395-76660061
chr15	76794652	76794845	+	B2_Mm2	SINE	B2	chr15	76794824	76794826	-	ENSMUST00000176855.7,ENSMUSG00000033697.15	Arhgap39	ENSMUSG00000033697.15	ENSMUST00000176855.7	protein_coding	chr15:76751677-76794825
chr15	77067790	77067897	+	U6	snRNA	snRNA	chr15	77067790	77067792	+	ENSMUST00000178183.1,ENSMUSG00000095245.1	Gm24753	ENSMUSG00000095245.1	ENSMUST00000178183.1	snRNA	chr15:77067791-77067897
chr15	77153688	77153771	+	CT-rich	Low_complexity	Low_complexity	chr15	77153753	77153755	-	ENSMUST00000228087.1,ENSMUSG00000033565.18	Rbfox2	ENSMUSG00000033565.18	ENSMUST00000228087.1	protein_coding	chr15:77083800-77153754
chr15	77370412	77371133	+	RMER21B	LTR	ERV1	chr15	77371009	77371011	-	ENSMUST00000229296.1,ENSMUSG00000116284.1	Gm3787	ENSMUSG00000116284.1	ENSMUST00000229296.1	transcribed_processed_pseudogene	chr15:77369494-77371010
chr15	77392313	77392428	+	B2_Mm2	SINE	B2	chr15	77392380	77392382	-	ENSMUST00000176779.1,ENSMUSG00000093458.1	Gm20688	ENSMUSG00000093458.1	ENSMUST00000176779.1	sense_intronic	chr15:77391702-77392381
chr15	77396432	77396565	-	RMER10B	LTR	ERVL	chr15	77396457	77396459	-	ENSMUST00000010745.12,ENSMUSG00000010601.14	Apol7a	ENSMUSG00000010601.14	ENSMUST00000010745.12	protein_coding	chr15:77388957-77396458
chr15	77396797	77396936	+	MT2B	LTR	ERVL	chr15	77396933	77396935	-	ENSMUST00000177135.1,ENSMUSG00000010601.14	Apol7a	ENSMUSG00000010601.14	ENSMUST00000177135.1	protein_coding	chr15:77393333-77396934
chr15	77396830	77396961	+	B1_Mus2	SINE	Alu	chr15	77396933	77396935	-	ENSMUST00000177135.1,ENSMUSG00000010601.14	Apol7a	ENSMUSG00000010601.14	ENSMUST00000177135.1	protein_coding	chr15:77393333-77396934
chr15	77398826	77399187	-	MT2B1	LTR	ERVL	chr15	77399109	77399111	-	ENSMUST00000176074.8,ENSMUSG00000010601.14	Apol7a	ENSMUSG00000010601.14	ENSMUST00000176074.8	protein_coding	chr15:77388219-77399110
chr15	77398826	77399187	-	MT2B1	LTR	ERVL	chr15	77399085	77399087	-	ENSMUST00000175919.7,ENSMUSG00000010601.14	Apol7a	ENSMUSG00000010601.14	ENSMUST00000175919.7	protein_coding	chr15:77388222-77399086
chr15	77446098	77446569	-	MT2C_Mm	LTR	ERVL	chr15	77446195	77446197	-	ENSMUST00000229434.1,ENSMUSG00000068252.6	Apol7b	ENSMUSG00000068252.6	ENSMUST00000229434.1	protein_coding	chr15:77423730-77446196
chr15	77740681	77741019	+	MT2B1	LTR	ERVL	chr15	77740760	77740762	+	ENSMUST00000230156.1,ENSMUSG00000115979.1	Gm49410	ENSMUSG00000115979.1	ENSMUST00000230156.1	TEC	chr15:77740761-77743890
chr15	77840656	77840756	-	U6	snRNA	snRNA	chr15	77840755	77840757	-	ENSMUST00000122548.1,ENSMUSG00000084497.1	Gm22107	ENSMUSG00000084497.1	ENSMUST00000122548.1	snRNA	chr15:77840657-77840756
chr15	77963764	77963952	+	MER2	DNA	TcMar-Tigger	chr15	77963771	77963773	-	ENSMUST00000230711.1,ENSMUSG00000016554.9	Eif3d	ENSMUSG00000016554.9	ENSMUST00000230711.1	protein_coding	chr15:77962493-77963772
chr15	78325654	78325756	-	MIRb	SINE	MIR	chr15	78325751	78325753	+	ENSMUST00000230264.2,ENSMUSG00000071713.6	Csf2rb	ENSMUSG00000071713.6	ENSMUST00000230264.2	protein_coding	chr15:78325752-78351001
chr15	78325781	78325899	-	L2b	LINE	L2	chr15	78325797	78325799	+	ENSMUST00000229920.1,ENSMUSG00000071713.6	Csf2rb	ENSMUSG00000071713.6	ENSMUST00000229920.1	protein_coding	chr15:78325798-78338382
chr15	78369149	78369248	-	MER45A	DNA	hAT-Tip100	chr15	78369247	78369249	+	ENSMUST00000093723.1,ENSMUSG00000070235.1	Gm26329	ENSMUSG00000070235.1	ENSMUST00000093723.1	misc_RNA	chr15:78369248-78369357
chr15	78423838	78424205	-	RMER19C	LTR	ERVK	chr15	78424192	78424194	-	ENSMUST00000229780.1,ENSMUSG00000115854.1	Gm36644	ENSMUSG00000115854.1	ENSMUST00000229780.1	lincRNA	chr15:78420496-78424193
chr15	78531345	78531433	+	MIRb	SINE	MIR	chr15	78531415	78531417	-	ENSMUST00000230943.1,ENSMUSG00000022440.9	C1qtnf6	ENSMUSG00000022440.9	ENSMUST00000230943.1	protein_coding	chr15:78527394-78531416
chr15	78544497	78544716	+	G-rich	Low_complexity	Low_complexity	chr15	78544684	78544686	-	ENSMUST00000053239.3,ENSMUSG00000044933.3	Sstr3	ENSMUSG00000044933.3	ENSMUST00000053239.3	protein_coding	chr15:78537008-78544685
chr15	78868325	78868736	+	L1MB5	LINE	L1	chr15	78868532	78868534	-	ENSMUST00000181146.2,ENSMUSG00000097085.2	Gm26634	ENSMUSG00000097085.2	ENSMUST00000181146.2	lincRNA	chr15:78862956-78868533
chr15	78877527	78877568	+	GC_rich	Low_complexity	Low_complexity	chr15	78877550	78877552	+	ENSMUST00000230192.1,ENSMUSG00000033128.9	Gga1	ENSMUSG00000033128.9	ENSMUST00000230192.1	protein_coding	chr15:78877551-78894581
chr15	78882920	78883058	+	B1_Mur4	SINE	Alu	chr15	78883001	78883003	+	ENSMUST00000230243.1,ENSMUSG00000033128.9	Gga1	ENSMUSG00000033128.9	ENSMUST00000230243.1	protein_coding	chr15:78883002-78884209
chr15	78908123	78908231	+	MIR3	SINE	MIR	chr15	78908164	78908166	+	ENSMUST00000229803.1,ENSMUSG00000022436.16	Sh3bp1	ENSMUSG00000022436.16	ENSMUST00000229803.1	protein_coding	chr15:78908165-78911799
chr15	78983683	78983731	-	MIRc	SINE	MIR	chr15	78983704	78983706	+	ENSMUST00000144151.2,ENSMUSG00000033088.19	Triobp	ENSMUSG00000033088.19	ENSMUST00000144151.2	protein_coding	chr15:78983705-78991438
chr15	79010848	79011288	-	MT2_Mm	LTR	ERVL	chr15	79011040	79011042	-	ENSMUST00000230425.1,ENSMUSG00000116505.1	Gm10865	ENSMUSG00000116505.1	ENSMUST00000230425.1	antisense	chr15:78994955-79011041
chr15	79033497	79033519	-	B1_Mur3	SINE	Alu	chr15	79033497	79033499	+	ENSMUST00000229276.1,ENSMUSG00000006378.15	Gcat	ENSMUSG00000006378.15	ENSMUST00000229276.1	protein_coding	chr15:79033498-79036313
chr15	79051029	79051180	+	MIRb	SINE	MIR	chr15	79051175	79051177	-	ENSMUST00000230803.1,ENSMUSG00000116287.1	Gm3924	ENSMUSG00000116287.1	ENSMUST00000230803.1	lincRNA	chr15:79045599-79051176
chr15	79064609	79064697	-	Lx7	LINE	L1	chr15	79064660	79064662	+	ENSMUST00000229249.1,ENSMUSG00000115887.1	Gm49471	ENSMUSG00000115887.1	ENSMUST00000229249.1	TEC	chr15:79064661-79065948
chr15	79094913	79095058	-	B1_Mus2	SINE	Alu	chr15	79095056	79095058	-	ENSMUST00000175233.2,ENSMUSG00000092974.2	Gm25072	ENSMUSG00000092974.2	ENSMUST00000175233.2	misc_RNA	chr15:79094823-79095057
chr15	79108887	79108947	+	GC_rich	Low_complexity	Low_complexity	chr15	79108897	79108899	+	ENSMUST00000229113.1,ENSMUSG00000033039.10	Micall1	ENSMUSG00000033039.10	ENSMUST00000229113.1	protein_coding	chr15:79108898-79125309
chr15	79108977	79109011	+	GC_rich	Low_complexity	Low_complexity	chr15	79108982	79108984	+	ENSMUST00000229031.1,ENSMUSG00000033039.10	Micall1	ENSMUSG00000033039.10	ENSMUST00000229031.1	protein_coding	chr15:79108983-79136896
chr15	79432928	79433126	+	L1ME4b	LINE	L1	chr15	79433125	79433127	-	ENSMUST00000229510.1,ENSMUSG00000022433.19	Csnk1e	ENSMUSG00000022433.19	ENSMUST00000229510.1	protein_coding	chr15:79429712-79433126
chr15	79441965	79442072	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr15	79441998	79442000	-	ENSMUST00000117786.7,ENSMUSG00000022433.19	Csnk1e	ENSMUSG00000022433.19	ENSMUST00000117786.7	protein_coding	chr15:79417856-79441999
chr15	79441965	79442072	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr15	79442001	79442003	-	ENSMUST00000120859.7,ENSMUSG00000022433.19	Csnk1e	ENSMUSG00000022433.19	ENSMUST00000120859.7	protein_coding	chr15:79419166-79442002
chr15	79472271	79472382	+	(TG)n	Simple_repeat	Simple_repeat	chr15	79472380	79472382	+	ENSMUST00000104762.3,ENSMUSG00000106626.1	Gm44302	ENSMUSG00000106626.1	ENSMUST00000104762.3	miRNA	chr15:79472381-79472471
chr15	79594664	79594806	+	B1_Mus1	SINE	Alu	chr15	79594792	79594794	-	ENSMUST00000175482.3,ENSMUSG00000093223.3	Gm27903	ENSMUSG00000093223.3	ENSMUST00000175482.3	miRNA	chr15:79594668-79594793
chr15	79626988	79627940	+	RMER13B	LTR	ERVK	chr15	79627389	79627391	-	ENSMUST00000230429.1,ENSMUSG00000042564.13	Fam227a	ENSMUSG00000042564.13	ENSMUST00000230429.1	protein_coding	chr15:79625378-79627390
chr15	79628022	79628228	+	B3A	SINE	B2	chr15	79628060	79628062	-	ENSMUST00000230484.1,ENSMUSG00000042564.13	Fam227a	ENSMUSG00000042564.13	ENSMUST00000230484.1	protein_coding	chr15:79620702-79628061
chr15	79692500	79692590	+	5S	rRNA	rRNA	chr15	79692501	79692503	+	ENSMUST00000082475.1,ENSMUSG00000064409.1	n-R5s40	ENSMUSG00000064409.1	ENSMUST00000082475.1	rRNA	chr15:79692502-79692625
chr15	79776921	79777107	+	URR1B	DNA	hAT-Charlie	chr15	79776971	79776973	-	ENSMUST00000162713.8,ENSMUSG00000022420.16	Dnal4	ENSMUSG00000022420.16	ENSMUST00000162713.8	protein_coding	chr15:79762137-79776972
chr15	79804754	79804800	+	GC_rich	Low_complexity	Low_complexity	chr15	79804765	79804767	-	ENSMUST00000023057.9,ENSMUSG00000022421.19	Nptxr	ENSMUSG00000022421.19	ENSMUST00000023057.9	protein_coding	chr15:79786351-79804766
chr15	79834295	79834331	+	GC_rich	Low_complexity	Low_complexity	chr15	79834324	79834326	-	ENSMUST00000127721.7,ENSMUSG00000089715.12	Cbx6	ENSMUSG00000089715.12	ENSMUST00000127721.7	protein_coding	chr15:79832572-79834325
chr15	79843081	79843398	+	RLTR15	LTR	ERVK	chr15	79843162	79843164	+	ENSMUST00000230701.1,ENSMUSG00000115971.1	Gm10856	ENSMUSG00000115971.1	ENSMUST00000230701.1	lincRNA	chr15:79843163-79846763
chr15	79889272	79889708	-	RLTR30D_MM	LTR	ERV1	chr15	79889531	79889533	+	ENSMUST00000230175.1,ENSMUSG00000115902.1	AC113595.1	ENSMUSG00000115902.1	ENSMUST00000230175.1	antisense	chr15:79889532-79893120
chr15	79894825	79895028	-	B4A	SINE	B4	chr15	79895022	79895024	+	ENSMUST00000023054.13,ENSMUSG00000009585.18	Apobec3	ENSMUSG00000009585.18	ENSMUST00000023054.13	protein_coding	chr15:79895023-79907906
chr15	79900182	79900302	+	MIRb	SINE	MIR	chr15	79900201	79900203	+	ENSMUST00000176644.1,ENSMUSG00000009585.18	Apobec3	ENSMUSG00000009585.18	ENSMUST00000176644.1	protein_coding	chr15:79900202-79907920
chr15	80088451	80088553	-	U6	snRNA	snRNA	chr15	80088552	80088554	-	ENSMUST00000082950.1,ENSMUSG00000064884.1	Gm24204	ENSMUSG00000064884.1	ENSMUST00000082950.1	snRNA	chr15:80088447-80088553
chr15	80091318	80091383	+	GC_rich	Low_complexity	Low_complexity	chr15	80091333	80091335	+	ENSMUST00000009728.12,ENSMUSG00000022415.12	Syngr1	ENSMUSG00000022415.12	ENSMUST00000009728.12	protein_coding	chr15:80091334-80113441
chr15	80091318	80091383	+	GC_rich	Low_complexity	Low_complexity	chr15	80091343	80091345	+	ENSMUST00000009727.11,ENSMUSG00000022415.12	Syngr1	ENSMUSG00000022415.12	ENSMUST00000009727.11	protein_coding	chr15:80091344-80119501
chr15	80115232	80115486	-	MLT1J	LTR	ERVL-MaLR	chr15	80115472	80115474	+	ENSMUST00000135727.1,ENSMUSG00000022415.12	Syngr1	ENSMUSG00000022415.12	ENSMUST00000135727.1	protein_coding	chr15:80115473-80116265
chr15	80173598	80173721	+	GC_rich	Low_complexity	Low_complexity	chr15	80173720	80173722	+	ENSMUST00000044970.6,ENSMUSG00000042428.6	Mgat3	ENSMUSG00000042428.6	ENSMUST00000044970.6	protein_coding	chr15:80173721-80215519
chr15	80287455	80287638	+	C-rich	Low_complexity	Low_complexity	chr15	80287533	80287535	+	ENSMUST00000162155.7,ENSMUSG00000022416.15	Cacna1i	ENSMUSG00000022416.15	ENSMUST00000162155.7	protein_coding	chr15:80287534-80395747
chr15	80389266	80389333	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr15	80389327	80389329	+	ENSMUST00000161863.7,ENSMUSG00000022416.15	Cacna1i	ENSMUSG00000022416.15	ENSMUST00000161863.7	protein_coding	chr15:80389328-80390917
chr15	80389266	80389333	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr15	80389327	80389329	+	ENSMUST00000162025.7,ENSMUSG00000022416.15	Cacna1i	ENSMUSG00000022416.15	ENSMUST00000162025.7	protein_coding	chr15:80389328-80390917
chr15	80389266	80389333	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr15	80389327	80389329	+	ENSMUST00000162913.7,ENSMUSG00000022416.15	Cacna1i	ENSMUSG00000022416.15	ENSMUST00000162913.7	protein_coding	chr15:80389328-80390917
chr15	80389266	80389333	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr15	80389327	80389329	+	ENSMUST00000160175.1,ENSMUSG00000022416.15	Cacna1i	ENSMUSG00000022416.15	ENSMUST00000160175.1	protein_coding	chr15:80389328-80393820
chr15	80697543	80697719	-	AmnSINE1	SINE	Deu	chr15	80697609	80697611	-	ENSMUST00000230612.1,ENSMUSG00000116220.1	A430088P11Rik	ENSMUSG00000116220.1	ENSMUST00000230612.1	antisense	chr15:80691025-80697610
chr15	80697543	80697719	-	AmnSINE1	SINE	Deu	chr15	80697601	80697603	-	ENSMUST00000230325.1,ENSMUSG00000116220.1	A430088P11Rik	ENSMUSG00000116220.1	ENSMUST00000230325.1	antisense	chr15:80694558-80697602
chr15	80882644	80882876	-	L1MC	LINE	L1	chr15	80882672	80882674	+	ENSMUST00000227546.1,ENSMUSG00000047888.10	Tnrc6b	ENSMUSG00000047888.10	ENSMUST00000227546.1	protein_coding	chr15:80882673-80883292
chr15	80961195	80961310	-	B1_Mur3	SINE	Alu	chr15	80961212	80961214	+	ENSMUST00000163575.1,ENSMUSG00000022407.10	Adsl	ENSMUSG00000022407.10	ENSMUST00000163575.1	protein_coding	chr15:80961213-80963844
chr15	81039642	81039718	+	U4	snRNA	snRNA	chr15	81039642	81039644	+	ENSMUST00000082653.1,ENSMUSG00000064587.1	Gm25131	ENSMUSG00000064587.1	ENSMUST00000082653.1	snRNA	chr15:81039643-81039793
chr15	81115810	81115996	-	B2_Mm1t	SINE	B2	chr15	81115844	81115846	-	ENSMUST00000230595.1,ENSMUSG00000116321.1	Gm49522	ENSMUSG00000116321.1	ENSMUST00000230595.1	TEC	chr15:81115033-81115845
chr15	81312514	81313079	-	MT2A	LTR	ERVL	chr15	81312865	81312867	-	ENSMUST00000230042.1,ENSMUSG00000115970.1	8430426J06Rik	ENSMUSG00000115970.1	ENSMUST00000230042.1	lincRNA	chr15:81250028-81312866
chr15	81324943	81325656	-	RMER6A	LTR	ERVK	chr15	81325046	81325048	-	ENSMUST00000229564.1,ENSMUSG00000022404.8	Slc25a17	ENSMUSG00000022404.8	ENSMUST00000229564.1	protein_coding	chr15:81319631-81325047
chr15	81592092	81592177	+	U6	snRNA	snRNA	chr15	81592092	81592094	+	ENSMUST00000122790.1,ENSMUSG00000084739.1	Gm22067	ENSMUSG00000084739.1	ENSMUST00000122790.1	snRNA	chr15:81592093-81592199
chr15	81710429	81710546	+	CT-rich	Low_complexity	Low_complexity	chr15	81710459	81710461	-	ENSMUST00000229705.1,ENSMUSG00000022391.16	Rangap1	ENSMUSG00000022391.16	ENSMUST00000229705.1	protein_coding	chr15:81709256-81710460
chr15	81820556	81820701	+	MIRb	SINE	MIR	chr15	81820592	81820594	+	ENSMUST00000167138.1,ENSMUSG00000022389.15	Tef	ENSMUSG00000022389.15	ENSMUST00000167138.1	protein_coding	chr15:81820593-81821383
chr15	81925337	81925481	-	B1_Mur4	SINE	Alu	chr15	81925395	81925397	-	ENSMUST00000230842.1,ENSMUSG00000022476.8	Polr3h	ENSMUSG00000022476.8	ENSMUST00000230842.1	protein_coding	chr15:81917199-81925396
chr15	81936785	81936814	+	(TGAG)n	Simple_repeat	Simple_repeat	chr15	81936791	81936793	+	ENSMUST00000230633.1,ENSMUSG00000042109.8	Csdc2	ENSMUSG00000042109.8	ENSMUST00000230633.1	protein_coding	chr15:81936792-81949262
chr15	81952129	81952289	-	ID_B1	SINE	B4	chr15	81952263	81952265	-	ENSMUST00000125593.1,ENSMUSG00000022474.15	Pmm1	ENSMUSG00000022474.15	ENSMUST00000125593.1	protein_coding	chr15:81951547-81952264
chr15	81953432	81953579	-	B1_Mus1	SINE	Alu	chr15	81953503	81953505	-	ENSMUST00000129406.1,ENSMUSG00000022474.15	Pmm1	ENSMUSG00000022474.15	ENSMUST00000129406.1	protein_coding	chr15:81951402-81953504
chr15	81960863	81960888	+	GC_rich	Low_complexity	Low_complexity	chr15	81960868	81960870	-	ENSMUST00000071462.6,ENSMUSG00000022474.15	Pmm1	ENSMUSG00000022474.15	ENSMUST00000071462.6	protein_coding	chr15:81951108-81960869
chr15	82022179	82022290	+	ID_B1	SINE	B4	chr15	82022282	82022284	+	ENSMUST00000164975.1,ENSMUSG00000022471.14	Xrcc6	ENSMUSG00000022471.14	ENSMUST00000164975.1	protein_coding	chr15:82022283-82022930
chr15	82025346	82025446	+	B1_Mm	SINE	Alu	chr15	82025388	82025390	+	ENSMUST00000166311.1,ENSMUSG00000022471.14	Xrcc6	ENSMUSG00000022471.14	ENSMUST00000166311.1	protein_coding	chr15:82025389-82029592
chr15	82025375	82025456	+	RLTR25A	LTR	ERVK	chr15	82025388	82025390	+	ENSMUST00000166311.1,ENSMUSG00000022471.14	Xrcc6	ENSMUSG00000022471.14	ENSMUST00000166311.1	protein_coding	chr15:82025389-82029592
chr15	82033811	82033930	+	ID_B1	SINE	B4	chr15	82033861	82033863	-	ENSMUST00000129039.7,ENSMUSG00000022472.16	Desi1	ENSMUSG00000022472.16	ENSMUST00000129039.7	protein_coding	chr15:81994645-82033862
chr15	82056913	82057051	-	B1_Mus2	SINE	Alu	chr15	82056988	82056990	-	ENSMUST00000229578.1,ENSMUSG00000116406.1	Gm49489	ENSMUSG00000116406.1	ENSMUST00000229578.1	processed_pseudogene	chr15:82056638-82056989
chr15	82147204	82147225	+	GC_rich	Low_complexity	Low_complexity	chr15	82147203	82147205	+	ENSMUST00000229336.1,ENSMUSG00000022463.8	Srebf2	ENSMUSG00000022463.8	ENSMUST00000229336.1	protein_coding	chr15:82147204-82204675
chr15	82185496	82185764	-	ORR1E	LTR	ERVL-MaLR	chr15	82185515	82185517	+	ENSMUST00000229390.1,ENSMUSG00000116226.1	Gm49502	ENSMUSG00000116226.1	ENSMUST00000229390.1	TEC	chr15:82185516-82187625
chr15	82233456	82233585	+	B1_Mus1	SINE	Alu	chr15	82233530	82233532	-	ENSMUST00000230791.1,ENSMUSG00000116009.1	Gm49503	ENSMUSG00000116009.1	ENSMUST00000230791.1	lincRNA	chr15:82229333-82233531
chr15	82274829	82274936	-	MIRc	SINE	MIR	chr15	82274892	82274894	+	ENSMUST00000116423.2,ENSMUSG00000022456.16	Sept3	ENSMUSG00000022456.16	ENSMUST00000116423.2	protein_coding	chr15:82274893-82292066
chr15	82275222	82275372	+	G-rich	Low_complexity	Low_complexity	chr15	82275238	82275240	+	ENSMUST00000023095.13,ENSMUSG00000022456.16	Sept3	ENSMUSG00000022456.16	ENSMUST00000023095.13	protein_coding	chr15:82275239-82294574
chr15	82275222	82275372	+	G-rich	Low_complexity	Low_complexity	chr15	82275275	82275277	+	ENSMUST00000230365.1,ENSMUSG00000022456.16	Sept3	ENSMUSG00000022456.16	ENSMUST00000230365.1	protein_coding	chr15:82275276-82293855
chr15	82338345	82338492	+	B1F2	SINE	Alu	chr15	82338459	82338461	-	ENSMUST00000230269.1,ENSMUSG00000022453.8	Naga	ENSMUSG00000022453.8	ENSMUST00000230269.1	protein_coding	chr15:82336770-82338460
chr15	82352438	82352456	+	A-rich	Low_complexity	Low_complexity	chr15	82352445	82352447	-	ENSMUST00000229427.1,ENSMUSG00000022450.6	Ndufa6	ENSMUSG00000022450.6	ENSMUST00000229427.1	protein_coding	chr15:82350170-82352446
chr15	82380245	82380332	+	GA-rich	Low_complexity	Low_complexity	chr15	82380256	82380258	-	ENSMUST00000023083.8,ENSMUSG00000061740.8	Cyp2d22	ENSMUSG00000061740.8	ENSMUST00000023083.8	protein_coding	chr15:82370527-82380257
chr15	82380245	82380332	+	GA-rich	Low_complexity	Low_complexity	chr15	82380259	82380261	-	ENSMUST00000230663.1,ENSMUSG00000061740.8	Cyp2d22	ENSMUSG00000061740.8	ENSMUST00000230663.1	protein_coding	chr15:82370527-82380260
chr15	82408301	82408549	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr15	82408457	82408459	+	ENSMUST00000102440.1,ENSMUSG00000076395.1	Gm25990	ENSMUSG00000076395.1	ENSMUST00000102440.1	miRNA	chr15:82408458-82408543
chr15	82719416	82719769	-	RMER17A	LTR	ERVK	chr15	82719415	82719417	-	ENSMUST00000230684.1,ENSMUSG00000116117.1	Cyp2d39-ps	ENSMUSG00000116117.1	ENSMUST00000230684.1	unprocessed_pseudogene	chr15:82716007-82719416
chr15	82959191	82959305	-	MIRb	SINE	MIR	chr15	82959295	82959297	-	ENSMUST00000175010.1,ENSMUSG00000092751.1	Mir3080	ENSMUSG00000092751.1	ENSMUST00000175010.1	miRNA	chr15:82959218-82959296
chr15	82963458	82963731	+	GC_rich	Low_complexity	Low_complexity	chr15	82963557	82963559	-	ENSMUST00000229547.1,ENSMUSG00000041852.15	Tcf20	ENSMUSG00000041852.15	ENSMUST00000229547.1	protein_coding	chr15:82856793-82963558
chr15	83023122	83023542	+	RMER17C	LTR	ERVK	chr15	83023137	83023139	-	ENSMUST00000109503.9,ENSMUSG00000058099.16	Nfam1	ENSMUSG00000058099.16	ENSMUST00000109503.9	protein_coding	chr15:82997721-83023138
chr15	83092462	83092910	-	RLTR33	LTR	ERVK	chr15	83092882	83092884	+	ENSMUST00000167862.1,ENSMUSG00000058586.12	Serhl	ENSMUSG00000058586.12	ENSMUST00000167862.1	protein_coding	chr15:83092883-83101997
chr15	83096959	83097272	+	ORR1A4	LTR	ERVL-MaLR	chr15	83097070	83097072	+	ENSMUST00000165371.7,ENSMUSG00000058586.12	Serhl	ENSMUSG00000058586.12	ENSMUST00000165371.7	protein_coding	chr15:83097071-83103008
chr15	83103654	83103772	-	PB1D7	SINE	Alu	chr15	83103696	83103698	+	ENSMUST00000167635.7,ENSMUSG00000058586.12	Serhl	ENSMUSG00000058586.12	ENSMUST00000167635.7	protein_coding	chr15:83103697-83115656
chr15	83118244	83118446	+	B3	SINE	B2	chr15	83118345	83118347	-	ENSMUST00000167589.1,ENSMUSG00000018040.9	Rrp7a	ENSMUSG00000018040.9	ENSMUST00000167589.1	protein_coding	chr15:83117226-83118346
chr15	83332997	83333305	+	Tigger17c	DNA	TcMar-Tigger	chr15	83333266	83333268	-	ENSMUST00000227511.1,ENSMUSG00000054277.8	Arfgap3	ENSMUSG00000054277.8	ENSMUST00000227511.1	protein_coding	chr15:83330589-83333267
chr15	83464566	83464623	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	83464605	83464607	-	ENSMUST00000171436.7,ENSMUSG00000016664.16	Pacsin2	ENSMUSG00000016664.16	ENSMUST00000171436.7	protein_coding	chr15:83375607-83464606
chr15	83464566	83464623	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	83464569	83464571	-	ENSMUST00000230679.1,ENSMUSG00000016664.16	Pacsin2	ENSMUSG00000016664.16	ENSMUST00000230679.1	protein_coding	chr15:83376122-83464570
chr15	83464566	83464623	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	83464569	83464571	-	ENSMUST00000056177.6,ENSMUSG00000016664.16	Pacsin2	ENSMUSG00000016664.16	ENSMUST00000056177.6	protein_coding	chr15:83376122-83464570
chr15	83516884	83517038	-	B1_Mur3	SINE	Alu	chr15	83516935	83516937	+	ENSMUST00000175502.1,ENSMUSG00000093243.1	Gm24575	ENSMUSG00000093243.1	ENSMUST00000175502.1	miRNA	chr15:83516936-83517012
chr15	83552878	83552994	+	PB1D10	SINE	Alu	chr15	83552886	83552888	-	ENSMUST00000229724.1,ENSMUSG00000048755.9	Mcat	ENSMUSG00000048755.9	ENSMUST00000229724.1	protein_coding	chr15:83547827-83552887
chr15	83779992	83780070	+	GC_rich	Low_complexity	Low_complexity	chr15	83780022	83780024	+	ENSMUST00000046168.11,ENSMUSG00000041708.12	Mpped1	ENSMUSG00000041708.12	ENSMUST00000046168.11	protein_coding	chr15:83780023-83858484
chr15	84105599	84105621	+	GC_rich	Low_complexity	Low_complexity	chr15	84105608	84105610	-	ENSMUST00000229826.1,ENSMUSG00000018865.9	Sult4a1	ENSMUSG00000018865.9	ENSMUST00000229826.1	protein_coding	chr15:84077145-84105609
chr15	84106475	84106672	+	ID_B1	SINE	B4	chr15	84106657	84106659	+	ENSMUST00000229889.1,ENSMUSG00000116072.1	Gm46526	ENSMUSG00000116072.1	ENSMUST00000229889.1	lincRNA	chr15:84106658-84108851
chr15	84127297	84127333	+	(CCTA)n	Simple_repeat	Simple_repeat	chr15	84127303	84127305	+	ENSMUST00000231019.1,ENSMUSG00000115925.1	Gm33432	ENSMUSG00000115925.1	ENSMUST00000231019.1	lincRNA	chr15:84127304-84136259
chr15	84181761	84181929	+	G-rich	Low_complexity	Low_complexity	chr15	84181913	84181915	+	ENSMUST00000231124.1,ENSMUSG00000116227.1	Gm49513	ENSMUSG00000116227.1	ENSMUST00000231124.1	processed_transcript	chr15:84181914-84195881
chr15	84271170	84271318	-	LTR9	LTR	ERV1	chr15	84271290	84271292	+	ENSMUST00000131158.1,ENSMUSG00000022438.6	Parvb	ENSMUSG00000022438.6	ENSMUST00000131158.1	protein_coding	chr15:84271291-84273906
chr15	84446477	84446547	+	GC_rich	Low_complexity	Low_complexity	chr15	84446544	84446546	-	ENSMUST00000189248.6,ENSMUSG00000062760.10	Shisal1	ENSMUSG00000062760.10	ENSMUST00000189248.6	protein_coding	chr15:84380047-84446545
chr15	84446599	84446676	+	(TC)n	Simple_repeat	Simple_repeat	chr15	84446609	84446611	-	ENSMUST00000189994.6,ENSMUSG00000062760.10	Shisal1	ENSMUSG00000062760.10	ENSMUST00000189994.6	protein_coding	chr15:84406569-84446610
chr15	84752476	84752968	+	MT2_Mm	LTR	ERVL	chr15	84752779	84752781	+	ENSMUST00000100464.3,ENSMUSG00000078954.9	Arhgap8	ENSMUSG00000078954.9	ENSMUST00000100464.3	protein_coding	chr15:84752780-84757186
chr15	84906607	84906669	+	LFSINE_Vert	SINE	tRNA	chr15	84906641	84906643	+	ENSMUST00000230387.1,ENSMUSG00000116491.1	4930513L16Rik	ENSMUSG00000116491.1	ENSMUST00000230387.1	lincRNA	chr15:84906642-84913731
chr15	84920012	84920148	-	MTD-int	LTR	ERVL-MaLR	chr15	84920037	84920039	-	ENSMUST00000189185.1,ENSMUSG00000100967.1	Gm29666	ENSMUSG00000100967.1	ENSMUST00000189185.1	protein_coding	chr15:84910438-84920038
chr15	84987976	84988074	+	C-rich	Low_complexity	Low_complexity	chr15	84987999	84988001	-	ENSMUST00000047144.12,ENSMUSG00000036046.14	5031439G07Rik	ENSMUSG00000036046.14	ENSMUST00000047144.12	protein_coding	chr15:84943936-84988000
chr15	85028826	85029151	+	ORR1A2	LTR	ERVL-MaLR	chr15	85028947	85028949	+	ENSMUST00000229629.1,ENSMUSG00000022434.8	Fam118a	ENSMUSG00000022434.8	ENSMUST00000229629.1	protein_coding	chr15:85028948-85046150
chr15	85205985	85206012	+	GC_rich	Low_complexity	Low_complexity	chr15	85206004	85206006	+	ENSMUST00000109432.3,ENSMUSG00000006369.14	Fbln1	ENSMUSG00000006369.14	ENSMUST00000109432.3	protein_coding	chr15:85206005-85251885
chr15	85351066	85351254	-	U2	snRNA	snRNA	chr15	85351253	85351255	-	ENSMUST00000082830.1,ENSMUSG00000064764.1	Gm23517	ENSMUSG00000064764.1	ENSMUST00000082830.1	snRNA	chr15:85351063-85351254
chr15	85580168	85580269	+	MIR3	SINE	MIR	chr15	85580251	85580253	+	ENSMUST00000229134.1,ENSMUSG00000097209.2	AU022754	ENSMUSG00000097209.2	ENSMUST00000229134.1	antisense	chr15:85580252-85582707
chr15	86067784	86067830	+	(CA)n	Simple_repeat	Simple_repeat	chr15	86067812	86067814	+	ENSMUST00000123474.1,ENSMUSG00000035900.18	Gramd4	ENSMUSG00000035900.18	ENSMUST00000123474.1	protein_coding	chr15:86067813-86122261
chr15	86149584	86149777	+	7SK	RNA	RNA	chr15	86149583	86149585	+	ENSMUST00000157732.1,ENSMUSG00000088357.1	Gm24011	ENSMUSG00000088357.1	ENSMUST00000157732.1	misc_RNA	chr15:86149584-86149851
chr15	86152371	86152518	+	MTD	LTR	ERVL-MaLR	chr15	86152447	86152449	-	ENSMUST00000156546.1,ENSMUSG00000035891.16	Cerk	ENSMUSG00000035891.16	ENSMUST00000156546.1	protein_coding	chr15:86140321-86152448
chr15	86212562	86212657	-	U6	snRNA	snRNA	chr15	86212656	86212658	-	ENSMUST00000157446.1,ENSMUSG00000088071.1	Gm22818	ENSMUSG00000088071.1	ENSMUST00000157446.1	snRNA	chr15:86212554-86212657
chr15	87068953	87069148	+	RLTR17B_Mm	LTR	ERVK	chr15	87068992	87068994	+	ENSMUST00000175520.1,ENSMUSG00000093261.1	Gm23416	ENSMUSG00000093261.1	ENSMUST00000175520.1	miRNA	chr15:87068993-87069087
chr15	87169112	87169208	+	5S	rRNA	rRNA	chr15	87169112	87169114	+	ENSMUST00000082697.1,ENSMUSG00000064631.1	n-R5s42	ENSMUSG00000064631.1	ENSMUST00000082697.1	rRNA	chr15:87169113-87169216
chr15	88835299	88835406	+	U6	snRNA	snRNA	chr15	88835299	88835301	+	ENSMUST00000180226.1,ENSMUSG00000093831.1	Gm23144	ENSMUSG00000093831.1	ENSMUST00000180226.1	snRNA	chr15:88835300-88835406
chr15	89019220	89019378	+	U1	snRNA	snRNA	chr15	89019220	89019222	+	ENSMUST00000082547.1,ENSMUSG00000064481.1	Gm23737	ENSMUSG00000064481.1	ENSMUST00000082547.1	snRNA	chr15:89019221-89019379
chr15	89076021	89076096	+	C-rich	Low_complexity	Low_complexity	chr15	89076071	89076073	+	ENSMUST00000169870.7,ENSMUSG00000015363.13	Trabd	ENSMUSG00000015363.13	ENSMUST00000169870.7	protein_coding	chr15:89076072-89087071
chr15	89076021	89076096	+	C-rich	Low_complexity	Low_complexity	chr15	89076093	89076095	+	ENSMUST00000169891.7,ENSMUSG00000015363.13	Trabd	ENSMUSG00000015363.13	ENSMUST00000169891.7	protein_coding	chr15:89076094-89086130
chr15	89149588	89149666	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr15	89149627	89149629	-	ENSMUST00000088823.4,ENSMUSG00000053137.7	Mapk11	ENSMUSG00000053137.7	ENSMUST00000088823.4	protein_coding	chr15:89142487-89149628
chr15	89180766	89180806	+	GC_rich	Low_complexity	Low_complexity	chr15	89180787	89180789	-	ENSMUST00000109331.8,ENSMUSG00000036606.17	Plxnb2	ENSMUSG00000036606.17	ENSMUST00000109331.8	protein_coding	chr15:89155549-89180788
chr15	89215007	89215029	+	AT_rich	Low_complexity	Low_complexity	chr15	89215011	89215013	-	ENSMUST00000181384.1,ENSMUSG00000097578.1	Gm26798	ENSMUSG00000097578.1	ENSMUST00000181384.1	lincRNA	chr15:89211559-89215012
chr15	89258844	89258989	-	B1_Mus2	SINE	Alu	chr15	89258945	89258947	+	ENSMUST00000226875.1,ENSMUSG00000036561.8	Ppp6r2	ENSMUSG00000036561.8	ENSMUST00000226875.1	protein_coding	chr15:89258946-89286261
chr15	89427141	89427271	-	B1_Mus1	SINE	Alu	chr15	89427160	89427162	-	ENSMUST00000112664.8,ENSMUSG00000022617.15	Chkb	ENSMUSG00000022617.15	ENSMUST00000112664.8	protein_coding	chr15:89426360-89427161
chr15	89427141	89427271	-	B1_Mus1	SINE	Alu	chr15	89427158	89427160	-	ENSMUST00000115278.2,ENSMUSG00000022617.15	Chkb	ENSMUSG00000022617.15	ENSMUST00000115278.2	protein_coding	chr15:89426468-89427159
chr15	89476196	89476286	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr15	89476235	89476237	+	ENSMUST00000136218.1,ENSMUSG00000084915.2	C230037L18Rik	ENSMUSG00000084915.2	ENSMUST00000136218.1	antisense	chr15:89476236-89484847
chr15	89476196	89476286	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr15	89476251	89476253	+	ENSMUST00000166953.1,ENSMUSG00000084915.2	C230037L18Rik	ENSMUSG00000084915.2	ENSMUST00000166953.1	antisense	chr15:89476252-89477913
chr15	89523661	89523686	+	GC_rich	Low_complexity	Low_complexity	chr15	89523676	89523678	-	ENSMUST00000155610.1,ENSMUSG00000086602.1	Gm15609	ENSMUSG00000086602.1	ENSMUST00000155610.1	lincRNA	chr15:89520096-89523677
chr15	89523741	89523865	+	GC_rich	Low_complexity	Low_complexity	chr15	89523760	89523762	+	ENSMUST00000230807.1,ENSMUSG00000022623.16	Shank3	ENSMUSG00000022623.16	ENSMUST00000230807.1	protein_coding	chr15:89523761-89557760
chr15	89523741	89523865	+	GC_rich	Low_complexity	Low_complexity	chr15	89523760	89523762	+	ENSMUST00000229559.1,ENSMUSG00000022623.16	Shank3	ENSMUSG00000022623.16	ENSMUST00000229559.1	protein_coding	chr15:89523761-89558323
chr15	89736511	89738709	+	Lx7	LINE	L1	chr15	89736516	89736518	-	ENSMUST00000229546.1,ENSMUSG00000116149.1	Gm18476	ENSMUSG00000116149.1	ENSMUST00000229546.1	processed_pseudogene	chr15:89735961-89736517
chr15	89888725	89889120	-	MTA_Mm	LTR	ERVL-MaLR	chr15	89889051	89889053	-	ENSMUST00000178305.1,ENSMUSG00000096784.1	Gm24643	ENSMUSG00000096784.1	ENSMUST00000178305.1	miRNA	chr15:89888952-89889052
chr15	90054408	90054515	-	U6	snRNA	snRNA	chr15	90054514	90054516	-	ENSMUST00000180218.1,ENSMUSG00000095422.1	Gm24415	ENSMUSG00000095422.1	ENSMUST00000180218.1	snRNA	chr15:90054409-90054515
chr15	90074247	90074550	-	ORR1F	LTR	ERVL-MaLR	chr15	90074510	90074512	+	ENSMUST00000230688.1,ENSMUSG00000116231.1	Gm36330	ENSMUSG00000116231.1	ENSMUST00000230688.1	lincRNA	chr15:90074511-90075302
chr15	90353338	90353725	-	MTA_Mm	LTR	ERVL-MaLR	chr15	90353705	90353707	+	ENSMUST00000229899.1,ENSMUSG00000116204.1	Gm36480	ENSMUSG00000116204.1	ENSMUST00000229899.1	lincRNA	chr15:90353706-90368444
chr15	90679350	90679422	+	G-rich	Low_complexity	Low_complexity	chr15	90679370	90679372	-	ENSMUST00000088649.10,ENSMUSG00000052560.15	Cpne8	ENSMUSG00000052560.15	ENSMUST00000088649.10	protein_coding	chr15:90487482-90679371
chr15	90679350	90679422	+	G-rich	Low_complexity	Low_complexity	chr15	90679387	90679389	-	ENSMUST00000014777.8,ENSMUSG00000052560.15	Cpne8	ENSMUSG00000052560.15	ENSMUST00000014777.8	protein_coding	chr15:90643326-90679388
chr15	90679350	90679422	+	G-rich	Low_complexity	Low_complexity	chr15	90679375	90679377	-	ENSMUST00000154569.1,ENSMUSG00000052560.15	Cpne8	ENSMUSG00000052560.15	ENSMUST00000154569.1	protein_coding	chr15:90648233-90679376
chr15	90899021	90900152	-	L1VL2	LINE	L1	chr15	90899021	90899023	-	ENSMUST00000229463.1,ENSMUSG00000116210.1	Spn-ps	ENSMUSG00000116210.1	ENSMUST00000229463.1	transcribed_processed_pseudogene	chr15:90897915-90899022
chr15	90899021	90900152	-	L1VL2	LINE	L1	chr15	90899760	90899762	+	ENSMUST00000230674.1,ENSMUSG00000116428.1	Gm36618	ENSMUSG00000116428.1	ENSMUST00000230674.1	processed_transcript	chr15:90899761-90921109
chr15	90907155	90907508	+	MTE2b	LTR	ERVL-MaLR	chr15	90907428	90907430	+	ENSMUST00000229921.1,ENSMUSG00000116428.1	Gm36618	ENSMUSG00000116428.1	ENSMUST00000229921.1	processed_transcript	chr15:90907429-90922783
chr15	91559683	91559783	-	5S	rRNA	rRNA	chr15	91559782	91559784	-	ENSMUST00000157112.1,ENSMUSG00000087737.1	Gm24647	ENSMUSG00000087737.1	ENSMUST00000157112.1	rRNA	chr15:91559671-91559783
chr15	91597435	91597816	+	RLTR16	LTR	ERVK	chr15	91597582	91597584	+	ENSMUST00000144579.1,ENSMUSG00000086160.1	4933438A12Rik	ENSMUSG00000086160.1	ENSMUST00000144579.1	lincRNA	chr15:91597583-91604676
chr15	91617194	91617437	-	7SK	RNA	RNA	chr15	91617436	91617438	-	ENSMUST00000157340.1,ENSMUSG00000087965.1	Gm25389	ENSMUSG00000087965.1	ENSMUST00000157340.1	misc_RNA	chr15:91617152-91617437
chr15	92344249	92344839	+	RLTR16C_MM	LTR	ERVK	chr15	92344358	92344360	+	ENSMUST00000181901.2,ENSMUSG00000097068.2	Gm26760	ENSMUSG00000097068.2	ENSMUST00000181901.2	lincRNA	chr15:92344359-92378103
chr15	93137571	93137922	+	RLTR10	LTR	ERVK	chr15	93137593	93137595	-	ENSMUST00000229929.1,ENSMUSG00000116124.1	Gm49420	ENSMUSG00000116124.1	ENSMUST00000229929.1	processed_transcript	chr15:93134911-93137594
chr15	93234362	93234603	+	7SK	RNA	RNA	chr15	93234362	93234364	+	ENSMUST00000083977.1,ENSMUSG00000065911.1	Gm24447	ENSMUSG00000065911.1	ENSMUST00000083977.1	misc_RNA	chr15:93234363-93234700
chr15	93344683	93344786	+	U6	snRNA	snRNA	chr15	93344683	93344685	+	ENSMUST00000157829.1,ENSMUSG00000088454.1	Gm26371	ENSMUSG00000088454.1	ENSMUST00000157829.1	snRNA	chr15:93344684-93344787
chr15	93398395	93398444	+	(CGG)n	Simple_repeat	Simple_repeat	chr15	93398396	93398398	+	ENSMUST00000049122.15,ENSMUSG00000036167.16	Pphln1	ENSMUSG00000036167.16	ENSMUST00000049122.15	protein_coding	chr15:93398397-93491510
chr15	93398395	93398444	+	(CGG)n	Simple_repeat	Simple_repeat	chr15	93398399	93398401	+	ENSMUST00000068457.14,ENSMUSG00000036167.16	Pphln1	ENSMUSG00000036167.16	ENSMUST00000068457.14	protein_coding	chr15:93398400-93491498
chr15	93398395	93398444	+	(CGG)n	Simple_repeat	Simple_repeat	chr15	93398431	93398433	+	ENSMUST00000229071.1,ENSMUSG00000036167.16	Pphln1	ENSMUSG00000036167.16	ENSMUST00000229071.1	protein_coding	chr15:93398432-93489414
chr15	93712727	93712787	+	MIR3	SINE	MIR	chr15	93712768	93712770	-	ENSMUST00000229650.1,ENSMUSG00000116190.1	Gm41386	ENSMUSG00000116190.1	ENSMUST00000229650.1	lincRNA	chr15:93705313-93712769
chr15	94465342	94465775	-	RMER2	LTR	ERV1	chr15	94465417	94465419	-	ENSMUST00000128797.1,ENSMUSG00000022449.14	Adamts20	ENSMUSG00000022449.14	ENSMUST00000128797.1	protein_coding	chr15:94394734-94465418
chr15	95162090	95162619	-	RMER19B2	LTR	ERVK	chr15	95162393	95162395	-	ENSMUST00000189291.6,ENSMUSG00000100603.6	1700129L04Rik	ENSMUSG00000100603.6	ENSMUST00000189291.6	sense_intronic	chr15:95097542-95162394
chr15	95606564	95606665	-	U6	snRNA	snRNA	chr15	95606664	95606666	-	ENSMUST00000158935.1,ENSMUSG00000089560.1	Gm24668	ENSMUSG00000089560.1	ENSMUST00000158935.1	snRNA	chr15:95606562-95606665
chr15	95606665	95607050	-	L1MA4A	LINE	L1	chr15	95606664	95606666	-	ENSMUST00000158935.1,ENSMUSG00000089560.1	Gm24668	ENSMUSG00000089560.1	ENSMUST00000158935.1	snRNA	chr15:95606562-95606665
chr15	95632819	95633313	+	RLTR44C	LTR	ERVK	chr15	95632827	95632829	-	ENSMUST00000229611.1,ENSMUSG00000045608.7	Dbx2	ENSMUSG00000045608.7	ENSMUST00000229611.1	protein_coding	chr15:95624738-95632828
chr15	95655834	95655967	+	RSINE1	SINE	B4	chr15	95655959	95655961	-	ENSMUST00000054244.6,ENSMUSG00000045608.7	Dbx2	ENSMUSG00000045608.7	ENSMUST00000054244.6	protein_coding	chr15:95623563-95655960
chr15	95790863	95790918	+	(CGGAG)n	Simple_repeat	Simple_repeat	chr15	95790887	95790889	+	ENSMUST00000226936.1,ENSMUSG00000064210.7	Ano6	ENSMUSG00000064210.7	ENSMUST00000226936.1	protein_coding	chr15:95790888-95812647
chr15	95790863	95790918	+	(CGGAG)n	Simple_repeat	Simple_repeat	chr15	95790891	95790893	+	ENSMUST00000227791.1,ENSMUSG00000064210.7	Ano6	ENSMUSG00000064210.7	ENSMUST00000227791.1	protein_coding	chr15:95790892-95972959
chr15	95790863	95790918	+	(CGGAG)n	Simple_repeat	Simple_repeat	chr15	95790895	95790897	+	ENSMUST00000226682.1,ENSMUSG00000064210.7	Ano6	ENSMUSG00000064210.7	ENSMUST00000226682.1	protein_coding	chr15:95790896-95830962
chr15	95790925	95790955	+	(CCGAG)n	Simple_repeat	Simple_repeat	chr15	95790932	95790934	+	ENSMUST00000227151.1,ENSMUSG00000064210.7	Ano6	ENSMUSG00000064210.7	ENSMUST00000227151.1	protein_coding	chr15:95790933-95973826
chr15	95800201	95800782	-	Lx8	LINE	L1	chr15	95800721	95800723	+	ENSMUST00000226793.1,ENSMUSG00000064210.7	Ano6	ENSMUSG00000064210.7	ENSMUST00000226793.1	protein_coding	chr15:95800722-95913642
chr15	95879488	95879867	-	MTA_Mm	LTR	ERVL-MaLR	chr15	95879816	95879818	-	ENSMUST00000175237.1,ENSMUSG00000092978.1	Gm25070	ENSMUSG00000092978.1	ENSMUST00000175237.1	miRNA	chr15:95879716-95879817
chr15	95993932	95994329	-	MTB	LTR	ERVL-MaLR	chr15	95994128	95994130	-	ENSMUST00000227616.1,ENSMUSG00000115049.1	Gm49172	ENSMUSG00000115049.1	ENSMUST00000227616.1	processed_transcript	chr15:95972739-95994129
chr15	96054656	96055019	-	ORR1B1	LTR	ERVL-MaLR	chr15	96054824	96054826	-	ENSMUST00000230782.1,ENSMUSG00000078925.11	D030018L15Rik	ENSMUSG00000078925.11	ENSMUST00000230782.1	lincRNA	chr15:96051603-96054825
chr15	96079282	96079648	-	MTC	LTR	ERVL-MaLR	chr15	96079426	96079428	-	ENSMUST00000139808.7,ENSMUSG00000078925.11	D030018L15Rik	ENSMUSG00000078925.11	ENSMUST00000139808.7	lincRNA	chr15:96051616-96079427
chr15	96079282	96079648	-	MTC	LTR	ERVL-MaLR	chr15	96079552	96079554	-	ENSMUST00000140253.1,ENSMUSG00000078925.11	D030018L15Rik	ENSMUSG00000078925.11	ENSMUST00000140253.1	lincRNA	chr15:96073338-96079553
chr15	96241672	96242047	+	IAPEY_LTR	LTR	ERVK	chr15	96241788	96241790	-	ENSMUST00000181122.2,ENSMUSG00000097619.8	4833422M21Rik	ENSMUSG00000097619.8	ENSMUST00000181122.2	processed_transcript	chr15:96231870-96241789
chr15	96253866	96254031	+	MTEa	LTR	ERVL-MaLR	chr15	96253986	96253988	-	ENSMUST00000229950.1,ENSMUSG00000097619.8	4833422M21Rik	ENSMUSG00000097619.8	ENSMUST00000229950.1	processed_transcript	chr15:96251958-96253987
chr15	96287464	96287520	+	C-rich	Low_complexity	Low_complexity	chr15	96287517	96287519	+	ENSMUST00000134985.8,ENSMUSG00000033237.19	Arid2	ENSMUSG00000033237.19	ENSMUST00000134985.8	protein_coding	chr15:96287518-96352038
chr15	96460838	96460866	+	(TCCC)n	Simple_repeat	Simple_repeat	chr15	96460842	96460844	-	ENSMUST00000047835.7,ENSMUSG00000033228.8	Scaf11	ENSMUSG00000033228.8	ENSMUST00000047835.7	protein_coding	chr15:96413656-96460843
chr15	96497825	96498042	+	ORR1D2	LTR	ERVL-MaLR	chr15	96497901	96497903	+	ENSMUST00000229356.1,ENSMUSG00000116160.1	Gm41392	ENSMUSG00000116160.1	ENSMUST00000229356.1	lincRNA	chr15:96497902-96498888
chr15	96579523	96579924	+	MTB_Mm	LTR	ERVL-MaLR	chr15	96579583	96579585	-	ENSMUST00000230607.1,ENSMUSG00000023169.15	Slc38a1	ENSMUSG00000023169.15	ENSMUST00000230607.1	protein_coding	chr15:96578534-96579584
chr15	96642339	96642436	+	(TCC)n	Simple_repeat	Simple_repeat	chr15	96642398	96642400	-	ENSMUST00000229253.1,ENSMUSG00000023169.15	Slc38a1	ENSMUSG00000023169.15	ENSMUST00000229253.1	protein_coding	chr15:96638678-96642399
chr15	96671793	96671900	+	U6	snRNA	snRNA	chr15	96671792	96671794	+	ENSMUST00000082994.1,ENSMUSG00000064928.1	Gm22045	ENSMUSG00000064928.1	ENSMUST00000082994.1	snRNA	chr15:96671793-96671900
chr15	97166836	97167358	-	MLTR31F_MM	LTR	ERVK	chr15	97167241	97167243	-	ENSMUST00000229245.1,ENSMUSG00000116295.1	Gm32885	ENSMUSG00000116295.1	ENSMUST00000229245.1	lincRNA	chr15:97157029-97167242
chr15	97166836	97167358	-	MLTR31F_MM	LTR	ERVK	chr15	97167243	97167245	-	ENSMUST00000231024.1,ENSMUSG00000116295.1	Gm32885	ENSMUSG00000116295.1	ENSMUST00000231024.1	lincRNA	chr15:97160933-97167244
chr15	97166836	97167358	-	MLTR31F_MM	LTR	ERVK	chr15	97167242	97167244	-	ENSMUST00000229999.1,ENSMUSG00000116295.1	Gm32885	ENSMUSG00000116295.1	ENSMUST00000229999.1	lincRNA	chr15:97161189-97167243
chr15	97166836	97167358	-	MLTR31F_MM	LTR	ERVK	chr15	97167221	97167223	-	ENSMUST00000229491.1,ENSMUSG00000116295.1	Gm32885	ENSMUSG00000116295.1	ENSMUST00000229491.1	lincRNA	chr15:97165958-97167222
chr15	97784394	97784428	+	(CTGGGG)n	Simple_repeat	Simple_repeat	chr15	97784427	97784429	+	ENSMUST00000135073.1,ENSMUSG00000081534.3	Slc48a1	ENSMUSG00000081534.3	ENSMUST00000135073.1	protein_coding	chr15:97784428-97789963
chr15	97794353	97794541	+	B3	SINE	B2	chr15	97794444	97794446	-	ENSMUST00000151334.1,ENSMUSG00000022475.19	Hdac7	ENSMUSG00000022475.19	ENSMUST00000151334.1	protein_coding	chr15:97792687-97794445
chr15	97831738	97831800	+	GC_rich	Low_complexity	Low_complexity	chr15	97831766	97831768	-	ENSMUST00000088402.11,ENSMUSG00000022475.19	Hdac7	ENSMUSG00000022475.19	ENSMUST00000088402.11	protein_coding	chr15:97792681-97831767
chr15	97859687	97859738	+	(TG)n	Simple_repeat	Simple_repeat	chr15	97859697	97859699	-	ENSMUST00000139656.1,ENSMUSG00000022479.15	Vdr	ENSMUSG00000022479.15	ENSMUST00000139656.1	protein_coding	chr15:97857537-97859698
chr15	97935282	97935512	+	7SK	RNA	RNA	chr15	97935284	97935286	+	ENSMUST00000158608.1,ENSMUSG00000089233.1	Gm22202	ENSMUSG00000089233.1	ENSMUST00000158608.1	misc_RNA	chr15:97935285-97935595
chr15	98064110	98064290	+	L2a	LINE	L2	chr15	98064236	98064238	-	ENSMUST00000181855.7,ENSMUSG00000033075.17	Senp1	ENSMUSG00000033075.17	ENSMUST00000181855.7	protein_coding	chr15:98041232-98064237
chr15	98499369	98499472	-	B4	SINE	B4	chr15	98499404	98499406	+	ENSMUST00000205676.1,ENSMUSG00000108805.1	Olfr278-ps1	ENSMUSG00000108805.1	ENSMUST00000205676.1	unprocessed_pseudogene	chr15:98499405-98499642
chr15	98635103	98635138	+	GC_rich	Low_complexity	Low_complexity	chr15	98635104	98635106	+	ENSMUST00000230490.1,ENSMUSG00000003352.14	Cacnb3	ENSMUSG00000003352.14	ENSMUST00000230490.1	protein_coding	chr15:98635105-98644529
chr15	98826048	98826148	+	ID_B1	SINE	B4	chr15	98826127	98826129	-	ENSMUST00000229297.1,ENSMUSG00000067713.7	Prkag1	ENSMUSG00000067713.7	ENSMUST00000229297.1	protein_coding	chr15:98814531-98826128
chr15	98871183	98871212	+	(A)n	Simple_repeat	Simple_repeat	chr15	98871182	98871184	-	ENSMUST00000178486.8,ENSMUSG00000048154.17	Kmt2d	ENSMUSG00000048154.17	ENSMUST00000178486.8	protein_coding	chr15:98831669-98871183
chr15	98871183	98871212	+	(A)n	Simple_repeat	Simple_repeat	chr15	98871203	98871205	-	ENSMUST00000023741.15,ENSMUSG00000048154.17	Kmt2d	ENSMUSG00000048154.17	ENSMUST00000023741.15	protein_coding	chr15:98831672-98871204
chr15	98906498	98906616	-	RSINE1	SINE	B4	chr15	98906503	98906505	-	ENSMUST00000231087.1,ENSMUSG00000022999.15	Lmbr1l	ENSMUSG00000022999.15	ENSMUST00000231087.1	protein_coding	chr15:98904437-98906504
chr15	98942487	98942624	-	B1_Mur4	SINE	Alu	chr15	98942549	98942551	+	ENSMUST00000229079.1,ENSMUSG00000116494.1	Gm49449	ENSMUSG00000116494.1	ENSMUST00000229079.1	TEC	chr15:98942550-98943665
chr15	99081445	99081594	+	B1_Mus1	SINE	Alu	chr15	99081583	99081585	+	ENSMUST00000229740.1,ENSMUSG00000032783.9	Troap	ENSMUSG00000032783.9	ENSMUST00000229740.1	protein_coding	chr15:99081584-99082604
chr15	99126675	99126799	+	G-rich	Low_complexity	Low_complexity	chr15	99126793	99126795	+	ENSMUST00000229066.1,ENSMUSG00000051934.5	Spats2	ENSMUSG00000051934.5	ENSMUST00000229066.1	protein_coding	chr15:99126794-99180632
chr15	99295054	99295101	+	GC_rich	Low_complexity	Low_complexity	chr15	99295086	99295088	+	ENSMUST00000128352.7,ENSMUSG00000023007.15	Prpf40b	ENSMUSG00000023007.15	ENSMUST00000128352.7	protein_coding	chr15:99295087-99305965
chr15	99295821	99295981	+	MIR3	SINE	MIR	chr15	99295887	99295889	-	ENSMUST00000230608.1,ENSMUSG00000078907.2	Fam186b	ENSMUSG00000078907.2	ENSMUST00000230608.1	protein_coding	chr15:99280815-99295888
chr15	99295821	99295981	+	MIR3	SINE	MIR	chr15	99295894	99295896	+	ENSMUST00000136980.7,ENSMUSG00000023007.15	Prpf40b	ENSMUSG00000023007.15	ENSMUST00000136980.7	protein_coding	chr15:99295895-99317010
chr15	99368028	99368135	-	U6	snRNA	snRNA	chr15	99368134	99368136	-	ENSMUST00000179471.1,ENSMUSG00000095635.1	Gm22951	ENSMUSG00000095635.1	ENSMUST00000179471.1	snRNA	chr15:99368029-99368135
chr15	99401054	99401100	+	PB1D9	SINE	Alu	chr15	99401084	99401086	+	ENSMUST00000162274.1,ENSMUSG00000023010.15	Tmbim6	ENSMUSG00000023010.15	ENSMUST00000162274.1	protein_coding	chr15:99401085-99402102
chr15	99465328	99465367	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr15	99465327	99465329	-	ENSMUST00000229053.1,ENSMUSG00000116249.1	Gm49484	ENSMUSG00000116249.1	ENSMUST00000229053.1	processed_transcript	chr15:99457961-99465328
chr15	99591200	99591255	+	(CCG)n	Simple_repeat	Simple_repeat	chr15	99591233	99591235	+	ENSMUST00000231163.1,ENSMUSG00000044217.17	Aqp5	ENSMUSG00000044217.17	ENSMUST00000231163.1	protein_coding	chr15:99591234-99594666
chr15	99670334	99670387	+	(CA)n	Simple_repeat	Simple_repeat	chr15	99670367	99670369	+	ENSMUST00000023758.8,ENSMUSG00000023017.10	Asic1	ENSMUSG00000023017.10	ENSMUST00000023758.8	protein_coding	chr15:99670368-99701128
chr15	99705375	99705535	-	B2_Mm1a	SINE	B2	chr15	99705489	99705491	-	ENSMUST00000163472.2,ENSMUSG00000091604.2	Gm17349	ENSMUSG00000091604.2	ENSMUST00000163472.2	protein_coding	chr15:99702176-99705490
chr15	99772058	99772168	+	C-rich	Low_complexity	Low_complexity	chr15	99772091	99772093	-	ENSMUST00000176627.2,ENSMUSG00000023021.15	Cers5	ENSMUSG00000023021.15	ENSMUST00000176627.2	protein_coding	chr15:99745942-99772092
chr15	99803034	99803126	-	U6	snRNA	snRNA	chr15	99803125	99803127	-	ENSMUST00000083709.1,ENSMUSG00000065643.1	Gm25897	ENSMUSG00000065643.1	ENSMUST00000083709.1	snRNA	chr15:99803020-99803126
chr15	99934631	99934982	+	ORR1B1	LTR	ERVL-MaLR	chr15	99934812	99934814	+	ENSMUST00000177831.1,ENSMUSG00000096111.7	Gm21917	ENSMUSG00000096111.7	ENSMUST00000177831.1	antisense	chr15:99934813-99953044
chr15	99937441	99937532	-	PB1D10	SINE	Alu	chr15	99937440	99937442	-	ENSMUST00000104255.1,ENSMUSG00000077443.1	Gm23133	ENSMUSG00000077443.1	ENSMUST00000104255.1	snRNA	chr15:99937307-99937441
chr15	99973284	99973362	+	G-rich	Low_complexity	Low_complexity	chr15	99973286	99973288	-	ENSMUST00000188271.2,ENSMUSG00000100084.2	2310068J16Rik	ENSMUSG00000100084.2	ENSMUST00000188271.2	antisense	chr15:99972158-99973287
chr15	100000523	100000604	-	B1_Mur4	SINE	Alu	chr15	100000553	100000555	+	ENSMUST00000229426.1,ENSMUSG00000023025.16	Larp4	ENSMUSG00000023025.16	ENSMUST00000229426.1	protein_coding	chr15:100000554-100005302
chr15	100003139	100003276	+	B1_Mus1	SINE	Alu	chr15	100003256	100003258	+	ENSMUST00000231128.1,ENSMUSG00000023025.16	Larp4	ENSMUSG00000023025.16	ENSMUST00000231128.1	protein_coding	chr15:100003257-100011943
chr15	100227792	100227864	+	C-rich	Low_complexity	Low_complexity	chr15	100227818	100227820	+	ENSMUST00000023769.10,ENSMUSG00000023027.13	Atf1	ENSMUSG00000023027.13	ENSMUST00000023769.10	protein_coding	chr15:100227819-100261244
chr15	100449683	100449775	+	5S	rRNA	rRNA	chr15	100449683	100449685	+	ENSMUST00000122739.1,ENSMUSG00000084688.1	n-R5s43	ENSMUSG00000084688.1	ENSMUST00000122739.1	rRNA	chr15:100449684-100449793
chr15	100472288	100472429	-	B1_Mus1	SINE	Alu	chr15	100472406	100472408	+	ENSMUST00000231001.1,ENSMUSG00000037353.9	Letmd1	ENSMUSG00000037353.9	ENSMUST00000231001.1	protein_coding	chr15:100472407-100479164
chr15	100512236	100512277	+	(CTG)n	Simple_repeat	Simple_repeat	chr15	100512243	100512245	-	ENSMUST00000231174.1,ENSMUSG00000009733.9	Tfcp2	ENSMUSG00000009733.9	ENSMUST00000231174.1	protein_coding	chr15:100498012-100512244
chr15	100525729	100525875	+	B1_Mm	SINE	Alu	chr15	100525732	100525734	-	ENSMUST00000230363.1,ENSMUSG00000009733.9	Tfcp2	ENSMUSG00000009733.9	ENSMUST00000230363.1	protein_coding	chr15:100517991-100525733
chr15	100594950	100595069	-	MIRb	SINE	MIR	chr15	100595033	100595035	-	ENSMUST00000176300.7,ENSMUSG00000009739.17	Pou6f1	ENSMUSG00000009739.17	ENSMUST00000176300.7	protein_coding	chr15:100578247-100595034
chr15	100594950	100595069	-	MIRb	SINE	MIR	chr15	100595033	100595035	-	ENSMUST00000177202.7,ENSMUSG00000009739.17	Pou6f1	ENSMUSG00000009739.17	ENSMUST00000177202.7	protein_coding	chr15:100578247-100595034
chr15	100594950	100595069	-	MIRb	SINE	MIR	chr15	100595033	100595035	-	ENSMUST00000058274.13,ENSMUSG00000009739.17	Pou6f1	ENSMUSG00000009739.17	ENSMUST00000058274.13	protein_coding	chr15:100578247-100595034
chr15	100595340	100595533	+	MLT1A0	LTR	ERVL-MaLR	chr15	100595415	100595417	+	ENSMUST00000183834.1,ENSMUSG00000098620.1	Gm27209	ENSMUSG00000098620.1	ENSMUST00000183834.1	antisense	chr15:100595416-100597293
chr15	100599830	100599868	+	GC_rich	Low_complexity	Low_complexity	chr15	100599863	100599865	-	ENSMUST00000177247.8,ENSMUSG00000009739.17	Pou6f1	ENSMUSG00000009739.17	ENSMUST00000177247.8	protein_coding	chr15:100586616-100599864
chr15	100599830	100599868	+	GC_rich	Low_complexity	Low_complexity	chr15	100599863	100599865	-	ENSMUST00000177505.3,ENSMUSG00000009739.17	Pou6f1	ENSMUSG00000009739.17	ENSMUST00000177505.3	protein_coding	chr15:100588625-100599864
chr15	100615322	100615507	+	G-rich	Low_complexity	Low_complexity	chr15	100615348	100615350	+	ENSMUST00000000356.9,ENSMUSG00000000346.9	Dazap2	ENSMUSG00000000346.9	ENSMUST00000000356.9	protein_coding	chr15:100615349-100620761
chr15	100681571	100681637	+	(TCCC)n	Simple_repeat	Simple_repeat	chr15	100681582	100681584	-	ENSMUST00000230740.1,ENSMUSG00000023031.8	Cela1	ENSMUSG00000023031.8	ENSMUST00000230740.1	protein_coding	chr15:100674422-100681583
chr15	100681848	100681978	-	B1_Mur2	SINE	Alu	chr15	100681961	100681963	-	ENSMUST00000230572.1,ENSMUSG00000023031.8	Cela1	ENSMUSG00000023031.8	ENSMUST00000230572.1	protein_coding	chr15:100674421-100681962
chr15	100683031	100683141	+	B3A	SINE	B2	chr15	100683118	100683120	-	ENSMUST00000229235.1,ENSMUSG00000023031.8	Cela1	ENSMUSG00000023031.8	ENSMUST00000229235.1	protein_coding	chr15:100674624-100683119
chr15	100695556	100695900	+	MTD	LTR	ERVL-MaLR	chr15	100695772	100695774	+	ENSMUST00000229209.1,ENSMUSG00000090062.2	Galnt6os	ENSMUSG00000090062.2	ENSMUST00000229209.1	antisense	chr15:100695773-100698579
chr15	100695556	100695900	+	MTD	LTR	ERVL-MaLR	chr15	100695779	100695781	+	ENSMUST00000229410.1,ENSMUSG00000090062.2	Galnt6os	ENSMUSG00000090062.2	ENSMUST00000229410.1	antisense	chr15:100695780-100704403
chr15	100695556	100695900	+	MTD	LTR	ERVL-MaLR	chr15	100695779	100695781	+	ENSMUST00000160960.1,ENSMUSG00000090062.2	Galnt6os	ENSMUSG00000090062.2	ENSMUST00000160960.1	antisense	chr15:100695780-100704896
chr15	100802706	100802796	-	L1_Mur2	LINE	L1	chr15	100802747	100802749	+	ENSMUST00000162805.1,ENSMUSG00000023032.12	Slc4a8	ENSMUSG00000023032.12	ENSMUST00000162805.1	protein_coding	chr15:100802748-100806289
chr15	100812068	100812444	+	MTC	LTR	ERVL-MaLR	chr15	100812188	100812190	+	ENSMUST00000162483.1,ENSMUSG00000023032.12	Slc4a8	ENSMUSG00000023032.12	ENSMUST00000162483.1	protein_coding	chr15:100812189-100816030
chr15	100869482	100869896	+	L1ME1	LINE	L1	chr15	100869857	100869859	+	ENSMUST00000202527.3,ENSMUSG00000023033.14	Scn8a	ENSMUSG00000023033.14	ENSMUST00000202527.3	protein_coding	chr15:100869858-100936327
chr15	100869482	100869896	+	L1ME1	LINE	L1	chr15	100869857	100869859	+	ENSMUST00000201484.3,ENSMUSG00000023033.14	Scn8a	ENSMUSG00000023033.14	ENSMUST00000201484.3	protein_coding	chr15:100869858-100936327
chr15	100870562	100870651	+	GC_rich	Low_complexity	Low_complexity	chr15	100870644	100870646	+	ENSMUST00000201518.3,ENSMUSG00000023033.14	Scn8a	ENSMUSG00000023033.14	ENSMUST00000201518.3	protein_coding	chr15:100870645-101011064
chr15	100870924	100870945	+	GC_rich	Low_complexity	Low_complexity	chr15	100870944	100870946	+	ENSMUST00000201549.3,ENSMUSG00000023033.14	Scn8a	ENSMUSG00000023033.14	ENSMUST00000201549.3	protein_coding	chr15:100870945-101041693
chr15	101078556	101078654	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr15	101078566	101078568	-	ENSMUST00000213610.1,ENSMUSG00000095440.2	Fignl2	ENSMUSG00000095440.2	ENSMUST00000213610.1	protein_coding	chr15:101050194-101078567
chr15	101174054	101174091	+	(GGGA)n	Simple_repeat	Simple_repeat	chr15	101174066	101174068	+	ENSMUST00000000544.11,ENSMUSG00000000532.11	Acvr1b	ENSMUSG00000000532.11	ENSMUST00000000544.11	protein_coding	chr15:101174067-101213684
chr15	101368475	101368529	+	(TCTG)n	Simple_repeat	Simple_repeat	chr15	101368513	101368515	-	ENSMUST00000229267.1,ENSMUSG00000037185.9	Krt80	ENSMUSG00000037185.9	ENSMUST00000229267.1	protein_coding	chr15:101364267-101368514
chr15	101480202	101480341	-	MER20	DNA	hAT-Charlie	chr15	101480295	101480297	+	ENSMUST00000230173.1,ENSMUSG00000116011.1	Gm49501	ENSMUSG00000116011.1	ENSMUST00000230173.1	lincRNA	chr15:101480296-101483312
chr15	101933799	101934014	+	B4A	SINE	B4	chr15	101933986	101933988	-	ENSMUST00000230441.1,ENSMUSG00000061397.8	Krt79	ENSMUSG00000061397.8	ENSMUST00000230441.1	protein_coding	chr15:101931537-101933987
chr15	102203768	102203945	+	G-rich	Low_complexity	Low_complexity	chr15	102203892	102203894	-	ENSMUST00000229770.1,ENSMUSG00000023044.2	Csad	ENSMUSG00000023044.2	ENSMUST00000229770.1	protein_coding	chr15:102188564-102203893
chr15	102206518	102206663	+	B1_Mus2	SINE	Alu	chr15	102206558	102206560	+	ENSMUST00000229886.1,ENSMUSG00000046897.17	Zfp740	ENSMUSG00000046897.17	ENSMUST00000229886.1	protein_coding	chr15:102206559-102208425
chr15	102257498	102257572	+	C-rich	Low_complexity	Low_complexity	chr15	102257516	102257518	-	ENSMUST00000043172.14,ENSMUSG00000001288.15	Rarg	ENSMUSG00000001288.15	ENSMUST00000043172.14	protein_coding	chr15:102234938-102257517
chr15	102318994	102319187	+	B2_Mm2	SINE	B2	chr15	102319109	102319111	+	ENSMUST00000230617.1,ENSMUSG00000058290.4	Espl1	ENSMUSG00000058290.4	ENSMUST00000230617.1	protein_coding	chr15:102319110-102322106
chr15	102333600	102333734	+	ID_B1	SINE	B4	chr15	102333639	102333641	+	ENSMUST00000170713.1,ENSMUSG00000001285.12	Myg1	ENSMUSG00000001285.12	ENSMUST00000170713.1	protein_coding	chr15:102333640-102336901
chr15	102366911	102367004	+	(CTG)n	Simple_repeat	Simple_repeat	chr15	102366967	102366969	-	ENSMUST00000229464.1,ENSMUSG00000060284.7	Sp7	ENSMUSG00000060284.7	ENSMUST00000229464.1	protein_coding	chr15:102356781-102366968
chr15	102406727	102406755	+	GC_rich	Low_complexity	Low_complexity	chr15	102406754	102406756	+	ENSMUST00000165837.7,ENSMUSG00000001280.13	Sp1	ENSMUSG00000001280.13	ENSMUST00000165837.7	protein_coding	chr15:102406755-102408617
chr15	102407540	102407616	-	ID_B1	SINE	B4	chr15	102407587	102407589	+	ENSMUST00000168802.1,ENSMUSG00000001280.13	Sp1	ENSMUSG00000001280.13	ENSMUST00000168802.1	protein_coding	chr15:102407588-102408385
chr15	102456562	102456661	+	U6	snRNA	snRNA	chr15	102456562	102456564	+	ENSMUST00000158543.1,ENSMUSG00000089168.1	Gm24128	ENSMUSG00000089168.1	ENSMUST00000158543.1	snRNA	chr15:102456563-102456661
chr15	102470587	102470642	+	(CCCG)n	Simple_repeat	Simple_repeat	chr15	102470631	102470633	+	ENSMUST00000229102.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000229102.1	protein_coding	chr15:102470632-102486040
chr15	102470648	102470784	+	C-rich	Low_complexity	Low_complexity	chr15	102470652	102470654	+	ENSMUST00000229618.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000229618.1	protein_coding	chr15:102470653-102498881
chr15	102470648	102470784	+	C-rich	Low_complexity	Low_complexity	chr15	102470676	102470678	+	ENSMUST00000229275.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000229275.1	protein_coding	chr15:102470677-102474764
chr15	102470648	102470784	+	C-rich	Low_complexity	Low_complexity	chr15	102470756	102470758	+	ENSMUST00000231089.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000231089.1	protein_coding	chr15:102470757-102489807
chr15	102470648	102470784	+	C-rich	Low_complexity	Low_complexity	chr15	102470764	102470766	+	ENSMUST00000229802.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000229802.1	protein_coding	chr15:102470765-102498620
chr15	102470648	102470784	+	C-rich	Low_complexity	Low_complexity	chr15	102470783	102470785	+	ENSMUST00000229854.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000229854.1	protein_coding	chr15:102470784-102498881
chr15	102471051	102471080	+	GC_rich	Low_complexity	Low_complexity	chr15	102471067	102471069	+	ENSMUST00000229222.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000229222.1	protein_coding	chr15:102471068-102483288
chr15	102472614	102472751	-	B1F1	SINE	Alu	chr15	102472736	102472738	+	ENSMUST00000078404.14,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000078404.14	protein_coding	chr15:102472737-102500061
chr15	102485867	102486221	-	LFSINE_Vert	SINE	tRNA	chr15	102485883	102485885	+	ENSMUST00000230282.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000230282.1	protein_coding	chr15:102485884-102488432
chr15	102485867	102486221	-	LFSINE_Vert	SINE	tRNA	chr15	102485978	102485980	+	ENSMUST00000230997.1,ENSMUSG00000056851.14	Pcbp2	ENSMUSG00000056851.14	ENSMUST00000230997.1	protein_coding	chr15:102485979-102489330
chr15	102485867	102486221	-	LFSINE_Vert	SINE	tRNA	chr15	102485907	102485909	+	ENSMUST00000184881.1,ENSMUSG00000099112.1	Gm27406	ENSMUSG00000099112.1	ENSMUST00000184881.1	misc_RNA	chr15:102485908-102486089
chr15	102627780	102627885	-	U6	snRNA	snRNA	chr15	102627884	102627886	-	ENSMUST00000083177.1,ENSMUSG00000065111.1	Gm25141	ENSMUSG00000065111.1	ENSMUST00000083177.1	snRNA	chr15:102627779-102627885
chr15	102657553	102657620	+	ID4_	SINE	ID	chr15	102657567	102657569	+	ENSMUST00000231102.1,ENSMUSG00000116056.1	Gm4544	ENSMUSG00000116056.1	ENSMUST00000231102.1	lincRNA	chr15:102657568-102660213
chr15	102658579	102658725	-	B1_Mm	SINE	Alu	chr15	102658697	102658699	+	ENSMUST00000229601.1,ENSMUSG00000116056.1	Gm4544	ENSMUSG00000116056.1	ENSMUST00000229601.1	lincRNA	chr15:102658698-102660118
chr15	102921053	102921125	+	G-rich	Low_complexity	Low_complexity	chr15	102921102	102921104	+	ENSMUST00000001700.6,ENSMUSG00000001655.6	Hoxc13	ENSMUSG00000001655.6	ENSMUST00000001700.6	protein_coding	chr15:102921103-102928814
chr15	103251485	103251634	-	B1_Mur2	SINE	Alu	chr15	103251515	103251517	-	ENSMUST00000156927.7,ENSMUSG00000058794.12	Nfe2	ENSMUSG00000058794.12	ENSMUST00000156927.7	protein_coding	chr15:103248217-103251516
chr15	103251485	103251634	-	B1_Mur2	SINE	Alu	chr15	103251514	103251516	-	ENSMUST00000134554.1,ENSMUSG00000058794.12	Nfe2	ENSMUSG00000058794.12	ENSMUST00000134554.1	protein_coding	chr15:103248275-103251515
chr15	103356524	103356657	+	B1_Mus1	SINE	Alu	chr15	103356650	103356652	-	ENSMUST00000230460.1,ENSMUSG00000000555.8	Itga5	ENSMUSG00000000555.8	ENSMUST00000230460.1	protein_coding	chr15:103355926-103356651
chr15	103479061	103479161	+	ID_B1	SINE	B4	chr15	103479134	103479136	+	ENSMUST00000229835.1,ENSMUSG00000022488.9	Nckap1l	ENSMUSG00000022488.9	ENSMUST00000229835.1	protein_coding	chr15:103479135-103497938
chr15	103479061	103479161	+	ID_B1	SINE	B4	chr15	103479147	103479149	+	ENSMUST00000230276.1,ENSMUSG00000022488.9	Nckap1l	ENSMUSG00000022488.9	ENSMUST00000230276.1	protein_coding	chr15:103479148-103498809
chr15	103649113	103651023	-	L1Md_F2	LINE	L1	chr15	103649791	103649793	+	ENSMUST00000228461.1,ENSMUSG00000115329.1	Gm49272	ENSMUSG00000115329.1	ENSMUST00000228461.1	lincRNA	chr15:103649792-103655698
chr15	103655482	103661365	+	L1Md_T	LINE	L1	chr15	103657838	103657840	+	ENSMUST00000228191.1,ENSMUSG00000115279.1	Gm49273	ENSMUSG00000115279.1	ENSMUST00000228191.1	processed_pseudogene	chr15:103657839-103661681
chr15	103661365	103662382	+	L1Md_T	LINE	L1	chr15	103661511	103661513	-	ENSMUST00000227580.1,ENSMUSG00000115030.1	Gm49274	ENSMUSG00000115030.1	ENSMUST00000227580.1	unprocessed_pseudogene	chr15:103661105-103661512
chr15	103661365	103662382	+	L1Md_T	LINE	L1	chr15	103661981	103661983	-	ENSMUST00000226749.1,ENSMUSG00000115053.1	Gm49275	ENSMUSG00000115053.1	ENSMUST00000226749.1	unprocessed_pseudogene	chr15:103661886-103661982
chr15	103853238	103853586	-	MTA_Mm	LTR	ERVL-MaLR	chr15	103853518	103853520	-	ENSMUST00000177899.1,ENSMUSG00000095047.1	Gm22852	ENSMUSG00000095047.1	ENSMUST00000177899.1	miRNA	chr15:103853419-103853519
chr16	3108558	3108622	+	MER130	Unknown	Unknown	chr16	3108584	3108586	-	ENSMUST00000229902.1,ENSMUSG00000116441.1	Gm49554	ENSMUSG00000116441.1	ENSMUST00000229902.1	processed_pseudogene	chr16:3108351-3108585
chr16	3249547	3249817	+	MT2_Mm	LTR	ERVL	chr16	3249583	3249585	+	ENSMUST00000178153.1,ENSMUSG00000095122.1	Gm23215	ENSMUSG00000095122.1	ENSMUST00000178153.1	miRNA	chr16:3249584-3249704
chr16	3353638	3354125	-	MT2_Mm	LTR	ERVL	chr16	3353871	3353873	-	ENSMUST00000178593.1,ENSMUSG00000096667.1	Gm22862	ENSMUSG00000096667.1	ENSMUST00000178593.1	miRNA	chr16:3353752-3353872
chr16	3357385	3357979	-	MMERVK10C-int	LTR	ERVK	chr16	3357956	3357958	+	ENSMUST00000230546.1,ENSMUSG00000116412.1	Gm49505	ENSMUSG00000116412.1	ENSMUST00000230546.1	processed_pseudogene	chr16:3357957-3358206
chr16	3468159	3468652	+	MT2_Mm	LTR	ERVL	chr16	3468459	3468461	+	ENSMUST00000229453.1,ENSMUSG00000116455.1	Gm35974	ENSMUSG00000116455.1	ENSMUST00000229453.1	lincRNA	chr16:3468460-3481051
chr16	3505027	3510174	+	L1Md_F2	LINE	L1	chr16	3507195	3507197	-	ENSMUST00000231018.1,ENSMUSG00000115871.1	Gm49507	ENSMUSG00000115871.1	ENSMUST00000231018.1	lincRNA	chr16:3448993-3507196
chr16	3747790	3747935	-	B1_Mm	SINE	Alu	chr16	3747886	3747888	+	ENSMUST00000162207.1,ENSMUSG00000022529.11	Zfp263	ENSMUSG00000022529.11	ENSMUST00000162207.1	protein_coding	chr16:3747887-3750784
chr16	3770149	3770641	+	MT2_Mm	LTR	ERVL	chr16	3770453	3770455	+	ENSMUST00000231051.1,ENSMUSG00000115961.1	Gm41409	ENSMUSG00000115961.1	ENSMUST00000231051.1	lincRNA	chr16:3770454-3785729
chr16	3898179	3898275	-	PB1D9	SINE	Alu	chr16	3898232	3898234	+	ENSMUST00000146935.2,ENSMUSG00000093575.1	Gm20695	ENSMUSG00000093575.1	ENSMUST00000146935.2	protein_coding	chr16:3898233-3919486
chr16	3982184	3982535	+	L1M4	LINE	L1	chr16	3982203	3982205	-	ENSMUST00000145706.1,ENSMUSG00000039738.16	Slx4	ENSMUSG00000039738.16	ENSMUST00000145706.1	protein_coding	chr16:3979133-3982204
chr16	4057369	4057510	+	B1_Mus2	SINE	Alu	chr16	4057496	4057498	-	ENSMUST00000175521.1,ENSMUSG00000093262.1	Gm23413	ENSMUSG00000093262.1	ENSMUST00000175521.1	miRNA	chr16:4057373-4057497
chr16	4173621	4173641	+	(TG)n	Simple_repeat	Simple_repeat	chr16	4173635	4173637	-	ENSMUST00000195629.1,ENSMUSG00000103937.1	Gm37186	ENSMUSG00000103937.1	ENSMUST00000195629.1	TEC	chr16:4170776-4173636
chr16	4229111	4229345	+	HAL1	LINE	L1	chr16	4229229	4229231	+	ENSMUST00000160520.1,ENSMUSG00000089645.3	Gm5766	ENSMUSG00000089645.3	ENSMUST00000160520.1	transcribed_processed_pseudogene	chr16:4229230-4231206
chr16	4594626	4594713	+	C-rich	Low_complexity	Low_complexity	chr16	4594712	4594714	+	ENSMUST00000014447.12,ENSMUSG00000014303.13	Glis2	ENSMUSG00000014303.13	ENSMUST00000014447.12	protein_coding	chr16:4594713-4615957
chr16	4629596	4629706	-	MER63B	DNA	hAT-Blackjack	chr16	4629665	4629667	-	ENSMUST00000150724.1,ENSMUSG00000039637.15	Coro7	ENSMUSG00000039637.15	ENSMUST00000150724.1	protein_coding	chr16:4628752-4629666
chr16	4729726	4729909	-	B3	SINE	B2	chr16	4729868	4729870	+	ENSMUST00000132069.1,ENSMUSG00000086944.1	Gm15859	ENSMUSG00000086944.1	ENSMUST00000132069.1	antisense	chr16:4729869-4730809
chr16	4756873	4756970	+	C-rich	Low_complexity	Low_complexity	chr16	4756902	4756904	+	ENSMUST00000118885.7,ENSMUSG00000004070.15	Hmox2	ENSMUSG00000004070.15	ENSMUST00000118885.7	protein_coding	chr16:4756903-4766245
chr16	4771475	4771574	-	PB1D10	SINE	Alu	chr16	4771511	4771513	-	ENSMUST00000140187.7,ENSMUSG00000004071.13	Cdip1	ENSMUSG00000004071.13	ENSMUST00000140187.7	protein_coding	chr16:4766841-4771512
chr16	4880296	4880329	+	(A)n	Simple_repeat	Simple_repeat	chr16	4880314	4880316	-	ENSMUST00000037843.6,ENSMUSG00000039568.6	Ubald1	ENSMUSG00000039568.6	ENSMUST00000037843.6	protein_coding	chr16:4874778-4880315
chr16	4886262	4886290	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	4886267	4886269	+	ENSMUST00000229038.1,ENSMUSG00000022517.17	Mgrn1	ENSMUSG00000022517.17	ENSMUST00000229038.1	protein_coding	chr16:4886268-4937421
chr16	4915331	4915598	+	L1MB5	LINE	L1	chr16	4915462	4915464	+	ENSMUST00000230653.1,ENSMUSG00000022517.17	Mgrn1	ENSMUSG00000022517.17	ENSMUST00000230653.1	protein_coding	chr16:4915463-4924458
chr16	5011809	5011831	+	(TGG)n	Simple_repeat	Simple_repeat	chr16	5011824	5011826	-	ENSMUST00000201118.3,ENSMUSG00000022540.16	Rogdi	ENSMUSG00000022540.16	ENSMUST00000201118.3	protein_coding	chr16:5009908-5011825
chr16	5060776	5060882	-	U6	snRNA	snRNA	chr16	5060881	5060883	-	ENSMUST00000104179.1,ENSMUSG00000077367.1	Gm23483	ENSMUSG00000077367.1	ENSMUST00000104179.1	snRNA	chr16:5060775-5060882
chr16	5223150	5223672	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr16	5223363	5223365	+	ENSMUST00000180354.1,ENSMUSG00000096398.1	Gm23689	ENSMUSG00000096398.1	ENSMUST00000180354.1	miRNA	chr16:5223364-5223473
chr16	5227711	5228228	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr16	5227919	5227921	+	ENSMUST00000179270.1,ENSMUSG00000095347.1	Gm26095	ENSMUSG00000095347.1	ENSMUST00000179270.1	miRNA	chr16:5227920-5228029
chr16	7870057	7870107	-	MT2_Mm	LTR	ERVL	chr16	7870101	7870103	+	ENSMUST00000230593.1,ENSMUSG00000116450.1	Gm49534	ENSMUSG00000116450.1	ENSMUST00000230593.1	lincRNA	chr16:7870102-7879859
chr16	8336993	8337096	+	U6	snRNA	snRNA	chr16	8336992	8336994	+	ENSMUST00000158968.1,ENSMUSG00000089593.1	Gm26159	ENSMUSG00000089593.1	ENSMUST00000158968.1	snRNA	chr16:8336993-8337096
chr16	8449500	8449786	-	7SK	RNA	RNA	chr16	8449785	8449787	-	ENSMUST00000122526.1,ENSMUSG00000084475.1	Gm25782	ENSMUSG00000084475.1	ENSMUST00000122526.1	misc_RNA	chr16:8449498-8449786
chr16	8738287	8738351	+	GC_rich	Low_complexity	Low_complexity	chr16	8738341	8738343	-	ENSMUST00000161046.8,ENSMUSG00000022710.17	Usp7	ENSMUSG00000022710.17	ENSMUST00000161046.8	protein_coding	chr16:8690146-8738342
chr16	8738417	8738473	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	8738419	8738421	-	ENSMUST00000160326.7,ENSMUSG00000022710.17	Usp7	ENSMUSG00000022710.17	ENSMUST00000160326.7	protein_coding	chr16:8689600-8738420
chr16	8766200	8766276	-	U6	snRNA	snRNA	chr16	8766275	8766277	-	ENSMUST00000122788.1,ENSMUSG00000084737.1	Gm25805	ENSMUSG00000084737.1	ENSMUST00000122788.1	snRNA	chr16:8766169-8766276
chr16	8792151	8792459	-	ORR1A4	LTR	ERVL-MaLR	chr16	8792307	8792309	-	ENSMUST00000160405.7,ENSMUSG00000022710.17	Usp7	ENSMUSG00000022710.17	ENSMUST00000160405.7	protein_coding	chr16:8689595-8792308
chr16	8873089	8873183	-	5S	rRNA	rRNA	chr16	8873170	8873172	-	ENSMUST00000157357.1,ENSMUSG00000087982.1	Gm22224	ENSMUSG00000087982.1	ENSMUST00000157357.1	rRNA	chr16:8873079-8873171
chr16	9049834	9050180	+	ORR1A0	LTR	ERVL-MaLR	chr16	9049971	9049973	+	ENSMUST00000229201.1,ENSMUSG00000116426.1	Gm30567	ENSMUSG00000116426.1	ENSMUST00000229201.1	lincRNA	chr16:9049972-9055398
chr16	9079328	9079533	+	L2b	LINE	L2	chr16	9079395	9079397	+	ENSMUST00000229154.1,ENSMUSG00000116469.1	Gm49448	ENSMUSG00000116469.1	ENSMUST00000229154.1	lincRNA	chr16:9079396-9080596
chr16	9079947	9080240	+	RLTR27	LTR	ERVK	chr16	9080144	9080146	+	ENSMUST00000229166.1,ENSMUSG00000116469.1	Gm49448	ENSMUSG00000116469.1	ENSMUST00000229166.1	lincRNA	chr16:9080145-9137444
chr16	10227270	10227665	-	RLTR9E	LTR	ERVK	chr16	10227523	10227525	-	ENSMUST00000230210.1,ENSMUSG00000115943.1	Gm49455	ENSMUSG00000115943.1	ENSMUST00000230210.1	antisense	chr16:10186293-10227524
chr16	10273609	10274017	+	Lx5b	LINE	L1	chr16	10273749	10273751	+	ENSMUST00000175510.1,ENSMUSG00000093251.1	Gm22932	ENSMUSG00000093251.1	ENSMUST00000175510.1	miRNA	chr16:10273750-10273821
chr16	10429198	10429373	-	ID_B1	SINE	B4	chr16	10429260	10429262	-	ENSMUST00000141587.1,ENSMUSG00000050908.12	Tvp23a	ENSMUSG00000050908.12	ENSMUST00000141587.1	protein_coding	chr16:10427039-10429261
chr16	10805728	10805862	+	RSINE1	SINE	B4	chr16	10805838	10805840	-	ENSMUST00000230568.1,ENSMUSG00000022501.6	Prm1	ENSMUSG00000022501.6	ENSMUST00000230568.1	protein_coding	chr16:10796326-10805839
chr16	10812906	10812993	+	GA-rich	Low_complexity	Low_complexity	chr16	10812914	10812916	+	ENSMUST00000115822.1,ENSMUSG00000079740.1	Gm11172	ENSMUSG00000079740.1	ENSMUST00000115822.1	protein_coding	chr16:10812915-10812994
chr16	10827672	10827955	+	B4	SINE	B4	chr16	10827926	10827928	+	ENSMUST00000181732.1,ENSMUSG00000096921.1	Gm26822	ENSMUSG00000096921.1	ENSMUST00000181732.1	lincRNA	chr16:10827927-10833507
chr16	10965703	10965852	-	B1_Mus1	SINE	Alu	chr16	10965723	10965725	+	ENSMUST00000177685.1,ENSMUSG00000093897.1	Gm26268	ENSMUSG00000093897.1	ENSMUST00000177685.1	miRNA	chr16:10965724-10965849
chr16	10994268	10994410	+	B4A	SINE	B4	chr16	10994385	10994387	+	ENSMUST00000157918.1,ENSMUSG00000088543.1	Gm24961	ENSMUSG00000088543.1	ENSMUST00000157918.1	snRNA	chr16:10994386-10994569
chr16	11031684	11032190	+	RLTR16	LTR	ERVK	chr16	11031955	11031957	+	ENSMUST00000229764.1,ENSMUSG00000115992.1	Gm10832	ENSMUSG00000115992.1	ENSMUST00000229764.1	lincRNA	chr16:11031956-11036420
chr16	11046221	11046925	+	RMER1B	Other	Other	chr16	11046903	11046905	+	ENSMUST00000229230.1,ENSMUSG00000116274.1	Gm18724	ENSMUSG00000116274.1	ENSMUST00000229230.1	processed_pseudogene	chr16:11046904-11048290
chr16	11143843	11144315	+	LSU-rRNA_Hsa	rRNA	rRNA	chr16	11144124	11144126	+	ENSMUST00000102303.1,ENSMUSG00000076258.1	Gm23935	ENSMUSG00000076258.1	ENSMUST00000102303.1	miRNA	chr16:11144125-11144181
chr16	11167104	11167267	-	U1	snRNA	snRNA	chr16	11167266	11167268	-	ENSMUST00000082631.1,ENSMUSG00000064565.1	Gm24145	ENSMUSG00000064565.1	ENSMUST00000082631.1	snRNA	chr16:11167105-11167267
chr16	11194991	11195038	+	(CA)n	Simple_repeat	Simple_repeat	chr16	11194994	11194996	-	ENSMUST00000129962.1,ENSMUSG00000005846.12	Rsl1d1	ENSMUSG00000005846.12	ENSMUST00000129962.1	protein_coding	chr16:11193505-11194995
chr16	11322913	11322990	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	11322971	11322973	+	ENSMUST00000115814.3,ENSMUSG00000071669.14	Snx29	ENSMUSG00000071669.14	ENSMUST00000115814.3	protein_coding	chr16:11322972-11403836
chr16	11406640	11406780	-	B1_Mur4	SINE	Alu	chr16	11406656	11406658	+	ENSMUST00000122168.7,ENSMUSG00000071669.14	Snx29	ENSMUSG00000071669.14	ENSMUST00000122168.7	protein_coding	chr16:11406657-11661555
chr16	11909440	11909462	+	GC_rich	Low_complexity	Low_complexity	chr16	11909444	11909446	-	ENSMUST00000073371.6,ENSMUSG00000065979.12	Cpped1	ENSMUSG00000065979.12	ENSMUST00000073371.6	protein_coding	chr16:11884223-11909445
chr16	11984056	11984117	+	C-rich	Low_complexity	Low_complexity	chr16	11984112	11984114	+	ENSMUST00000182889.1,ENSMUSG00000022494.15	Shisa9	ENSMUSG00000022494.15	ENSMUST00000182889.1	protein_coding	chr16:11984113-11995390
chr16	12380719	12382724	-	Lx5c	LINE	L1	chr16	12381501	12381503	-	ENSMUST00000231026.1,ENSMUSG00000116403.1	Gm19571	ENSMUSG00000116403.1	ENSMUST00000231026.1	processed_pseudogene	chr16:12381130-12381502
chr16	12945907	12946023	-	Lx8	LINE	L1	chr16	12945934	12945936	-	ENSMUST00000230696.1,ENSMUSG00000116520.1	4930414F18Rik	ENSMUSG00000116520.1	ENSMUST00000230696.1	lincRNA	chr16:12629084-12945935
chr16	13256504	13256547	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	13256505	13256507	+	ENSMUST00000115809.7,ENSMUSG00000009569.14	Mkl2	ENSMUSG00000009569.14	ENSMUST00000115809.7	protein_coding	chr16:13256506-13332922
chr16	13462288	13462553	-	B4A	SINE	B4	chr16	13462545	13462547	+	ENSMUST00000210738.1,ENSMUSG00000109857.1	Gm32817	ENSMUSG00000109857.1	ENSMUST00000210738.1	processed_transcript	chr16:13462546-13467237
chr16	13684880	13684980	+	(GA)n	Simple_repeat	Simple_repeat	chr16	13684890	13684892	+	ENSMUST00000144804.1,ENSMUSG00000022684.15	Bfar	ENSMUSG00000022684.15	ENSMUST00000144804.1	protein_coding	chr16:13684891-13687541
chr16	13691705	13692087	+	L1Md_F2	LINE	L1	chr16	13691964	13691966	+	ENSMUST00000154568.1,ENSMUSG00000022684.15	Bfar	ENSMUSG00000022684.15	ENSMUST00000154568.1	protein_coding	chr16:13691965-13697506
chr16	13739179	13739593	+	RLTR9E	LTR	ERVK	chr16	13739203	13739205	-	ENSMUST00000229709.1,ENSMUSG00000115907.1	Gm49432	ENSMUSG00000115907.1	ENSMUST00000229709.1	lincRNA	chr16:13737852-13739204
chr16	13818693	13818862	-	RLTR11A2	LTR	ERVK	chr16	13818844	13818846	+	ENSMUST00000230788.1,ENSMUSG00000022681.15	Ntan1	ENSMUSG00000022681.15	ENSMUST00000230788.1	protein_coding	chr16:13818845-13826935
chr16	13819282	13819320	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr16	13819298	13819300	+	ENSMUST00000124604.7,ENSMUSG00000022681.15	Ntan1	ENSMUSG00000022681.15	ENSMUST00000124604.7	protein_coding	chr16:13819299-13832551
chr16	13819282	13819320	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr16	13819305	13819307	+	ENSMUST00000136618.7,ENSMUSG00000022681.15	Ntan1	ENSMUSG00000022681.15	ENSMUST00000136618.7	protein_coding	chr16:13819306-13835448
chr16	13834060	13834127	+	PB1D10	SINE	Alu	chr16	13834081	13834083	+	ENSMUST00000139161.1,ENSMUSG00000022681.15	Ntan1	ENSMUSG00000022681.15	ENSMUST00000139161.1	protein_coding	chr16:13834082-13835166
chr16	14037985	14042299	-	Lx	LINE	L1	chr16	14038860	14038862	-	ENSMUST00000119880.2,ENSMUSG00000082277.2	Gm15807	ENSMUSG00000082277.2	ENSMUST00000119880.2	processed_pseudogene	chr16:14037734-14038861
chr16	14382132	14382816	-	L1Md_T	LINE	L1	chr16	14382806	14382808	+	ENSMUST00000158481.1,ENSMUSG00000089106.1	Gm23116	ENSMUSG00000089106.1	ENSMUST00000158481.1	snRNA	chr16:14382807-14382873
chr16	14402182	14402737	-	L1_Mus3	LINE	L1	chr16	14402359	14402361	+	ENSMUST00000156089.1,ENSMUSG00000023088.17	Abcc1	ENSMUSG00000023088.17	ENSMUST00000156089.1	protein_coding	chr16:14402360-14420743
chr16	14560267	14562819	-	L1VL4	LINE	L1	chr16	14562316	14562318	+	ENSMUST00000129643.8,ENSMUSG00000075395.11	A630010A05Rik	ENSMUSG00000075395.11	ENSMUST00000129643.8	protein_coding	chr16:14562317-14634108
chr16	14578885	14580718	+	ORR1A2-int	LTR	ERVL-MaLR	chr16	14580220	14580222	+	ENSMUST00000147024.7,ENSMUSG00000075395.11	A630010A05Rik	ENSMUSG00000075395.11	ENSMUST00000147024.7	protein_coding	chr16:14580221-14621300
chr16	14785639	14791111	-	Lx3_Mus	LINE	L1	chr16	14791010	14791012	-	ENSMUST00000230613.1,ENSMUSG00000116400.1	Gm49530	ENSMUSG00000116400.1	ENSMUST00000230613.1	processed_pseudogene	chr16:14790417-14791011
chr16	14807164	14807269	-	U6	snRNA	snRNA	chr16	14807268	14807270	-	ENSMUST00000178877.1,ENSMUSG00000095165.1	Gm25547	ENSMUSG00000095165.1	ENSMUST00000178877.1	snRNA	chr16:14807163-14807269
chr16	14807263	14807622	+	ORR1B2-int	LTR	ERVL-MaLR	chr16	14807268	14807270	-	ENSMUST00000178877.1,ENSMUSG00000095165.1	Gm25547	ENSMUSG00000095165.1	ENSMUST00000178877.1	snRNA	chr16:14807163-14807269
chr16	15315392	15321041	+	L1Md_T	LINE	L1	chr16	15317457	15317459	+	ENSMUST00000178312.1,ENSMUSG00000094472.1	Gm21897	ENSMUSG00000094472.1	ENSMUST00000178312.1	protein_coding	chr16:15317458-15318957
chr16	15587328	15587366	+	(GAA)n	Simple_repeat	Simple_repeat	chr16	15587364	15587366	+	ENSMUST00000229197.1,ENSMUSG00000116386.1	Gm49538	ENSMUSG00000116386.1	ENSMUST00000229197.1	processed_pseudogene	chr16:15587365-15588059
chr16	15595578	15595804	-	MTD	LTR	ERVL-MaLR	chr16	15595772	15595774	-	ENSMUST00000229859.1,ENSMUSG00000022674.15	Ube2v2	ENSMUSG00000022674.15	ENSMUST00000229859.1	protein_coding	chr16:15552077-15595773
chr16	15746693	15751876	-	L1Md_T	LINE	L1	chr16	15750922	15750924	+	ENSMUST00000229449.1,ENSMUSG00000116118.1	Gm49511	ENSMUSG00000116118.1	ENSMUST00000229449.1	processed_pseudogene	chr16:15750923-15751192
chr16	16095870	16099603	+	L1_Mus3	LINE	L1	chr16	16099597	16099599	+	ENSMUST00000230117.1,ENSMUSG00000116385.1	Gm18334	ENSMUSG00000116385.1	ENSMUST00000230117.1	processed_pseudogene	chr16:16099598-16100111
chr16	16349081	16349642	+	MLTR31D_MM	LTR	ERVK	chr16	16349202	16349204	+	ENSMUST00000229446.1,ENSMUSG00000115923.1	Gm49521	ENSMUSG00000115923.1	ENSMUST00000229446.1	antisense	chr16:16349203-16359011
chr16	16600436	16600936	-	RMER5	LTR	ERV1	chr16	16600548	16600550	-	ENSMUST00000159542.7,ENSMUSG00000022788.16	Fgd4	ENSMUSG00000022788.16	ENSMUST00000159542.7	protein_coding	chr16:16462014-16600549
chr16	16849698	16849886	-	B2_Mm1a	SINE	B2	chr16	16849697	16849699	-	ENSMUST00000231706.1,ENSMUSG00000116729.1	AC165958.2	ENSMUSG00000116729.1	ENSMUST00000231706.1	processed_pseudogene	chr16:16848851-16849698
chr16	17173238	17173376	+	B1_Mur4	SINE	Alu	chr16	17173354	17173356	-	ENSMUST00000231557.1,ENSMUSG00000038965.17	Ube2l3	ENSMUSG00000038965.17	ENSMUST00000231557.1	protein_coding	chr16:17160022-17173355
chr16	17205791	17205898	-	U6	snRNA	snRNA	chr16	17205897	17205899	-	ENSMUST00000179034.1,ENSMUSG00000096434.1	Gm22129	ENSMUSG00000096434.1	ENSMUST00000179034.1	snRNA	chr16:17205792-17205898
chr16	17276046	17276221	-	ID_B1	SINE	B4	chr16	17276076	17276078	+	ENSMUST00000164950.10,ENSMUSG00000055692.21	Tmem191c	ENSMUSG00000055692.21	ENSMUST00000164950.10	protein_coding	chr16:17276077-17278661
chr16	17281591	17281659	+	B1_Mur2	SINE	Alu	chr16	17281644	17281646	-	ENSMUST00000232631.1,ENSMUSG00000041720.14	Pi4ka	ENSMUSG00000041720.14	ENSMUST00000232631.1	protein_coding	chr16:17280352-17281645
chr16	17341907	17342012	-	U6	snRNA	snRNA	chr16	17342011	17342013	-	ENSMUST00000083397.1,ENSMUSG00000065331.1	Gm24927	ENSMUSG00000065331.1	ENSMUST00000083397.1	snRNA	chr16:17341906-17342012
chr16	17483060	17483150	-	U6	snRNA	snRNA	chr16	17483148	17483150	-	ENSMUST00000158368.1,ENSMUSG00000088993.1	Gm22770	ENSMUSG00000088993.1	ENSMUST00000158368.1	snRNA	chr16:17483083-17483149
chr16	17489589	17489668	+	GC_rich	Low_complexity	Low_complexity	chr16	17489610	17489612	+	ENSMUST00000115685.9,ENSMUSG00000022763.18	Aifm3	ENSMUSG00000022763.18	ENSMUST00000115685.9	protein_coding	chr16:17489611-17507485
chr16	17489589	17489668	+	GC_rich	Low_complexity	Low_complexity	chr16	17489662	17489664	+	ENSMUST00000023448.14,ENSMUSG00000022763.18	Aifm3	ENSMUSG00000022763.18	ENSMUST00000023448.14	protein_coding	chr16:17489663-17507485
chr16	17518009	17518141	+	B1_Mm	SINE	Alu	chr16	17518065	17518067	+	ENSMUST00000231326.1,ENSMUSG00000022761.12	Lztr1	ENSMUSG00000022761.12	ENSMUST00000231326.1	protein_coding	chr16:17518066-17520528
chr16	17554302	17555119	-	RMER17A2	LTR	ERVK	chr16	17554431	17554433	-	ENSMUST00000232230.1,ENSMUSG00000022759.15	Lrrc74b	ENSMUSG00000022759.15	ENSMUST00000232230.1	protein_coding	chr16:17545430-17554432
chr16	17583155	17583339	+	B3A	SINE	B2	chr16	17583213	17583215	-	ENSMUST00000232186.1,ENSMUSG00000022756.17	Slc7a4	ENSMUSG00000022756.17	ENSMUST00000232186.1	protein_coding	chr16:17575704-17583214
chr16	17646528	17646624	+	GC_rich	Low_complexity	Low_complexity	chr16	17646550	17646552	+	ENSMUST00000183101.1,ENSMUSG00000041617.10	Ccdc74a	ENSMUSG00000041617.10	ENSMUST00000183101.1	protein_coding	chr16:17646551-17648473
chr16	17646528	17646624	+	GC_rich	Low_complexity	Low_complexity	chr16	17646563	17646565	+	ENSMUST00000182117.7,ENSMUSG00000041617.10	Ccdc74a	ENSMUSG00000041617.10	ENSMUST00000182117.7	protein_coding	chr16:17646564-17650737
chr16	17646528	17646624	+	GC_rich	Low_complexity	Low_complexity	chr16	17646564	17646566	+	ENSMUST00000182976.7,ENSMUSG00000041617.10	Ccdc74a	ENSMUSG00000041617.10	ENSMUST00000182976.7	protein_coding	chr16:17646565-17650409
chr16	17646528	17646624	+	GC_rich	Low_complexity	Low_complexity	chr16	17646612	17646614	+	ENSMUST00000182671.7,ENSMUSG00000041617.10	Ccdc74a	ENSMUSG00000041617.10	ENSMUST00000182671.7	protein_coding	chr16:17646613-17650738
chr16	17646528	17646624	+	GC_rich	Low_complexity	Low_complexity	chr16	17646617	17646619	+	ENSMUST00000182344.7,ENSMUSG00000041617.10	Ccdc74a	ENSMUSG00000041617.10	ENSMUST00000182344.7	protein_coding	chr16:17646618-17650447
chr16	17762709	17762855	-	B1_Mus1	SINE	Alu	chr16	17762790	17762792	+	ENSMUST00000120488.2,ENSMUSG00000022750.18	Klhl22	ENSMUSG00000022750.18	ENSMUST00000120488.2	protein_coding	chr16:17762791-17793382
chr16	17764058	17764163	-	PB1	SINE	Alu	chr16	17764092	17764094	+	ENSMUST00000140306.8,ENSMUSG00000022750.18	Klhl22	ENSMUSG00000022750.18	ENSMUST00000140306.8	protein_coding	chr16:17764093-17771844
chr16	17797272	17797378	+	C-rich	Low_complexity	Low_complexity	chr16	17797281	17797283	+	ENSMUST00000012161.4,ENSMUSG00000012017.4	Scarf2	ENSMUSG00000012017.4	ENSMUST00000012161.4	protein_coding	chr16:17797282-17808293
chr16	17797272	17797378	+	C-rich	Low_complexity	Low_complexity	chr16	17797314	17797316	+	ENSMUST00000232577.1,ENSMUSG00000012017.4	Scarf2	ENSMUSG00000012017.4	ENSMUST00000232577.1	protein_coding	chr16:17797315-17808290
chr16	17797272	17797378	+	C-rich	Low_complexity	Low_complexity	chr16	17797349	17797351	+	ENSMUST00000231329.1,ENSMUSG00000012017.4	Scarf2	ENSMUSG00000012017.4	ENSMUST00000231329.1	protein_coding	chr16:17797350-17808293
chr16	17836032	17836093	+	(TG)n	Simple_repeat	Simple_repeat	chr16	17836055	17836057	-	ENSMUST00000231865.1,ENSMUSG00000090236.3	Car15	ENSMUSG00000090236.3	ENSMUST00000231865.1	protein_coding	chr16:17835277-17836056
chr16	17905644	17905701	-	MTB	LTR	ERVL-MaLR	chr16	17905684	17905686	-	ENSMUST00000232366.1,ENSMUSG00000003527.9	Ess2	ENSMUSG00000003527.9	ENSMUST00000232366.1	protein_coding	chr16:17902818-17905685
chr16	18065053	18065249	-	ORR1D1	LTR	ERVL-MaLR	chr16	18065158	18065160	+	ENSMUST00000076757.11,ENSMUSG00000003531.15	Dgcr6	ENSMUSG00000003531.15	ENSMUST00000076757.11	protein_coding	chr16:18065159-18071342
chr16	18265263	18265574	-	ORR1D2	LTR	ERVL-MaLR	chr16	18265268	18265270	-	ENSMUST00000152033.1,ENSMUSG00000022718.12	Dgcr8	ENSMUSG00000022718.12	ENSMUST00000152033.1	protein_coding	chr16:18254941-18265269
chr16	18304127	18304299	+	RSINE1	SINE	B4	chr16	18304144	18304146	-	ENSMUST00000145758.1,ENSMUSG00000013539.14	Tango2	ENSMUSG00000013539.14	ENSMUST00000145758.1	protein_coding	chr16:18301223-18304145
chr16	18306003	18306163	-	B2_Mm1t	SINE	B2	chr16	18306120	18306122	-	ENSMUST00000231308.1,ENSMUSG00000013539.14	Tango2	ENSMUSG00000013539.14	ENSMUST00000231308.1	protein_coding	chr16:18301452-18306121
chr16	18311348	18311458	+	B1_Mus1	SINE	Alu	chr16	18311452	18311454	-	ENSMUST00000142677.1,ENSMUSG00000013539.14	Tango2	ENSMUSG00000013539.14	ENSMUST00000142677.1	protein_coding	chr16:18307987-18311453
chr16	18313021	18313158	+	B1_Mus1	SINE	Alu	chr16	18313033	18313035	-	ENSMUST00000152684.1,ENSMUSG00000013539.14	Tango2	ENSMUSG00000013539.14	ENSMUST00000152684.1	protein_coding	chr16:18310780-18313034
chr16	18331425	18331525	+	MT2B	LTR	ERVL	chr16	18331470	18331472	-	ENSMUST00000232588.1,ENSMUSG00000013539.14	Tango2	ENSMUSG00000013539.14	ENSMUST00000232588.1	protein_coding	chr16:18303720-18331471
chr16	18338929	18339117	+	B2_Mm1t	SINE	B2	chr16	18339077	18339079	-	ENSMUST00000232558.1,ENSMUSG00000013539.14	Tango2	ENSMUSG00000013539.14	ENSMUST00000232558.1	protein_coding	chr16:18324198-18339078
chr16	18361247	18361891	-	Lx5c	LINE	L1	chr16	18361505	18361507	-	ENSMUST00000175216.1,ENSMUSG00000092957.1	Gm26219	ENSMUSG00000092957.1	ENSMUST00000175216.1	miRNA	chr16:18361436-18361506
chr16	18586968	18587043	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr16	18586968	18586970	-	ENSMUST00000232335.1,ENSMUSG00000009097.10	Tbx1	ENSMUSG00000009097.10	ENSMUST00000232335.1	protein_coding	chr16:18580979-18586969
chr16	18586968	18587043	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr16	18586968	18586970	-	ENSMUST00000232143.1,ENSMUSG00000009097.10	Tbx1	ENSMUSG00000009097.10	ENSMUST00000232143.1	protein_coding	chr16:18581804-18586969
chr16	18629938	18630014	+	C-rich	Low_complexity	Low_complexity	chr16	18629953	18629955	-	ENSMUST00000096987.6,ENSMUSG00000072214.7	Sept5	ENSMUSG00000072214.7	ENSMUST00000096987.6	protein_coding	chr16:18621811-18629954
chr16	18629938	18630014	+	C-rich	Low_complexity	Low_complexity	chr16	18629938	18629940	-	ENSMUST00000231956.1,ENSMUSG00000072214.7	Sept5	ENSMUSG00000072214.7	ENSMUST00000231956.1	protein_coding	chr16:18622661-18629939
chr16	18941160	18941567	-	RMER10A	LTR	ERVL	chr16	18941545	18941547	+	ENSMUST00000232419.1,ENSMUSG00000022702.16	Hira	ENSMUSG00000022702.16	ENSMUST00000232419.1	protein_coding	chr16:18941546-18970276
chr16	19236662	19237535	-	RMER17B	LTR	ERVK	chr16	19236775	19236777	-	ENSMUST00000197818.1,ENSMUSG00000104927.1	Gm43388	ENSMUSG00000104927.1	ENSMUST00000197818.1	lincRNA	chr16:19212660-19236776
chr16	19319489	19319999	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr16	19319685	19319687	+	ENSMUST00000103823.2,ENSMUSG00000095529.1	Gm23612	ENSMUSG00000095529.1	ENSMUST00000103823.2	miRNA	chr16:19319686-19319795
chr16	19522181	19522270	+	(TC)n	Simple_repeat	Simple_repeat	chr16	19522265	19522267	-	ENSMUST00000214315.1,ENSMUSG00000045341.2	Olfr167	ENSMUSG00000045341.2	ENSMUST00000214315.1	protein_coding	chr16:19509558-19522266
chr16	19571710	19571810	-	L2	LINE	L2	chr16	19571749	19571751	-	ENSMUST00000215040.1,ENSMUSG00000068535.2	Olfr169	ENSMUSG00000068535.2	ENSMUST00000215040.1	protein_coding	chr16:19564889-19571750
chr16	19571710	19571810	-	L2	LINE	L2	chr16	19571770	19571772	-	ENSMUST00000216070.1,ENSMUSG00000068535.2	Olfr169	ENSMUSG00000068535.2	ENSMUST00000216070.1	protein_coding	chr16:19564889-19571771
chr16	19571710	19571810	-	L2	LINE	L2	chr16	19571808	19571810	-	ENSMUST00000215476.1,ENSMUSG00000068535.2	Olfr169	ENSMUSG00000068535.2	ENSMUST00000215476.1	protein_coding	chr16:19564889-19571809
chr16	20158936	20159051	+	PB1D9	SINE	Alu	chr16	20158947	20158949	+	ENSMUST00000232054.1,ENSMUSG00000041215.16	Yeats2	ENSMUSG00000041215.16	ENSMUST00000232054.1	protein_coding	chr16:20158948-20171194
chr16	20185339	20186170	-	L1VL4	LINE	L1	chr16	20185915	20185917	+	ENSMUST00000231861.1,ENSMUSG00000041215.16	Yeats2	ENSMUSG00000041215.16	ENSMUST00000231861.1	protein_coding	chr16:20185916-20189428
chr16	20325175	20325705	-	Lx7	LINE	L1	chr16	20325403	20325405	-	ENSMUST00000182508.8,ENSMUSG00000022818.13	Cyp2ab1	ENSMUSG00000022818.13	ENSMUST00000182508.8	protein_coding	chr16:20308387-20325404
chr16	20396265	20396418	-	RSINE1	SINE	B4	chr16	20396402	20396404	-	ENSMUST00000150340.1,ENSMUSG00000022822.16	Abcc5	ENSMUSG00000022822.16	ENSMUST00000150340.1	protein_coding	chr16:20378484-20396403
chr16	20566295	20566453	-	RSINE1	SINE	B4	chr16	20566357	20566359	+	ENSMUST00000231640.1,ENSMUSG00000116604.1	AC087898.2	ENSMUSG00000116604.1	ENSMUST00000231640.1	lincRNA	chr16:20566358-20568508
chr16	20659251	20659357	+	PB1D9	SINE	Alu	chr16	20659351	20659353	+	ENSMUST00000166071.1,ENSMUSG00000006998.16	Psmd2	ENSMUSG00000006998.16	ENSMUST00000166071.1	protein_coding	chr16:20659352-20660368
chr16	20668214	20668355	+	B1_Mus1	SINE	Alu	chr16	20668312	20668314	+	ENSMUST00000154594.7,ENSMUSG00000045983.16	Eif4g1	ENSMUSG00000045983.16	ENSMUST00000154594.7	protein_coding	chr16:20668313-20679395
chr16	20668214	20668355	+	B1_Mus1	SINE	Alu	chr16	20668314	20668316	+	ENSMUST00000128840.7,ENSMUSG00000045983.16	Eif4g1	ENSMUSG00000045983.16	ENSMUST00000128840.7	protein_coding	chr16:20668315-20678925
chr16	20733028	20733127	+	C-rich	Low_complexity	Low_complexity	chr16	20733126	20733128	+	ENSMUST00000115423.7,ENSMUSG00000006958.14	Chrd	ENSMUSG00000006958.14	ENSMUST00000115423.7	protein_coding	chr16:20733127-20738152
chr16	20733028	20733127	+	C-rich	Low_complexity	Low_complexity	chr16	20733126	20733128	+	ENSMUST00000007171.12,ENSMUSG00000006958.14	Chrd	ENSMUSG00000006958.14	ENSMUST00000007171.12	protein_coding	chr16:20733127-20742384
chr16	20733028	20733127	+	C-rich	Low_complexity	Low_complexity	chr16	20733126	20733128	+	ENSMUST00000153299.7,ENSMUSG00000006958.14	Chrd	ENSMUSG00000006958.14	ENSMUST00000153299.7	protein_coding	chr16:20733127-20742384
chr16	20893386	20894320	+	RodERV21-int	LTR	ERV1	chr16	20893558	20893560	-	ENSMUST00000232124.1,ENSMUSG00000116850.1	AC158985.3	ENSMUSG00000116850.1	ENSMUST00000232124.1	lincRNA	chr16:20875257-20893559
chr16	21423247	21423279	+	GC_rich	Low_complexity	Low_complexity	chr16	21423271	21423273	+	ENSMUST00000139473.1,ENSMUSG00000033653.18	Vps8	ENSMUSG00000033653.18	ENSMUST00000139473.1	protein_coding	chr16:21423272-21434973
chr16	21597595	21602966	+	L1Md_A	LINE	L1	chr16	21602563	21602565	+	ENSMUST00000231224.1,ENSMUSG00000033653.18	Vps8	ENSMUSG00000033653.18	ENSMUST00000231224.1	protein_coding	chr16:21602564-21644257
chr16	21607247	21608038	-	Lx8b	LINE	L1	chr16	21607845	21607847	+	ENSMUST00000232132.1,ENSMUSG00000033653.18	Vps8	ENSMUSG00000033653.18	ENSMUST00000232132.1	protein_coding	chr16:21607846-21644245
chr16	21694556	21694685	+	CT-rich	Low_complexity	Low_complexity	chr16	21694664	21694666	-	ENSMUST00000053336.7,ENSMUSG00000043391.10	2510009E07Rik	ENSMUSG00000043391.10	ENSMUST00000053336.7	protein_coding	chr16:21649045-21694665
chr16	21694556	21694685	+	CT-rich	Low_complexity	Low_complexity	chr16	21694628	21694630	-	ENSMUST00000231592.1,ENSMUSG00000043391.10	2510009E07Rik	ENSMUSG00000043391.10	ENSMUST00000231592.1	protein_coding	chr16:21676722-21694629
chr16	21694556	21694685	+	CT-rich	Low_complexity	Low_complexity	chr16	21694579	21694581	-	ENSMUST00000232634.1,ENSMUSG00000043391.10	2510009E07Rik	ENSMUSG00000043391.10	ENSMUST00000232634.1	protein_coding	chr16:21676725-21694580
chr16	21774112	21774218	+	U6	snRNA	snRNA	chr16	21774112	21774114	+	ENSMUST00000158133.1,ENSMUSG00000088758.1	Gm24898	ENSMUSG00000088758.1	ENSMUST00000158133.1	snRNA	chr16:21774113-21774218
chr16	21845711	21845827	+	(TC)n	Simple_repeat	Simple_repeat	chr16	21845775	21845777	-	ENSMUST00000181834.1,ENSMUSG00000097401.1	Gm26744	ENSMUSG00000097401.1	ENSMUST00000181834.1	lincRNA	chr16:21843451-21845776
chr16	21976698	21976822	-	B1F	SINE	Alu	chr16	21976752	21976754	-	ENSMUST00000232120.1,ENSMUSG00000044626.13	Liph	ENSMUSG00000044626.13	ENSMUST00000232120.1	protein_coding	chr16:21967984-21976753
chr16	22009514	22009588	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	22009534	22009536	+	ENSMUST00000231408.1,ENSMUSG00000022855.9	Senp2	ENSMUSG00000022855.9	ENSMUST00000231408.1	protein_coding	chr16:22009535-22011139
chr16	22009514	22009588	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	22009560	22009562	+	ENSMUST00000232679.1,ENSMUSG00000022855.9	Senp2	ENSMUSG00000022855.9	ENSMUST00000232679.1	protein_coding	chr16:22009561-22047153
chr16	22121002	22121460	-	L1MA5	LINE	L1	chr16	22121273	22121275	-	ENSMUST00000231926.1,ENSMUSG00000033581.17	Igf2bp2	ENSMUSG00000033581.17	ENSMUST00000231926.1	protein_coding	chr16:22059074-22121274
chr16	22121002	22121460	-	L1MA5	LINE	L1	chr16	22121235	22121237	-	ENSMUST00000232504.1,ENSMUSG00000033581.17	Igf2bp2	ENSMUSG00000033581.17	ENSMUST00000232504.1	protein_coding	chr16:22087528-22121236
chr16	22162979	22163021	+	GC_rich	Low_complexity	Low_complexity	chr16	22163018	22163020	-	ENSMUST00000129913.7,ENSMUSG00000033581.17	Igf2bp2	ENSMUSG00000033581.17	ENSMUST00000129913.7	protein_coding	chr16:22059055-22163019
chr16	22162979	22163021	+	GC_rich	Low_complexity	Low_complexity	chr16	22162991	22162993	-	ENSMUST00000125926.1,ENSMUSG00000033581.17	Igf2bp2	ENSMUSG00000033581.17	ENSMUST00000125926.1	protein_coding	chr16:22151464-22162992
chr16	22224243	22224349	+	U6	snRNA	snRNA	chr16	22224243	22224245	+	ENSMUST00000082752.1,ENSMUSG00000064686.1	Gm25810	ENSMUSG00000064686.1	ENSMUST00000082752.1	snRNA	chr16:22224244-22224351
chr16	22251826	22251853	+	(A)n	Simple_repeat	Simple_repeat	chr16	22251852	22251854	-	ENSMUST00000232411.1,ENSMUSG00000022858.16	Tra2b	ENSMUSG00000022858.16	ENSMUST00000232411.1	protein_coding	chr16:22247742-22251853
chr16	22595027	22595253	+	7SK	RNA	RNA	chr16	22595028	22595030	+	ENSMUST00000122562.1,ENSMUSG00000084511.1	Gm22481	ENSMUSG00000084511.1	ENSMUST00000122562.1	misc_RNA	chr16:22595029-22595220
chr16	22605170	22605464	-	Lx7	LINE	L1	chr16	22605325	22605327	+	ENSMUST00000184329.1,ENSMUSG00000098448.1	Mir6362	ENSMUSG00000098448.1	ENSMUST00000184329.1	miRNA	chr16:22605326-22605432
chr16	22839818	22840422	+	MLT-int	LTR	ERVL-MaLR	chr16	22840198	22840200	-	ENSMUST00000232009.1,ENSMUSG00000004462.7	Tbccd1	ENSMUSG00000004462.7	ENSMUST00000232009.1	protein_coding	chr16:22838332-22840199
chr16	22856717	22856947	+	B4A	SINE	B4	chr16	22856864	22856866	-	ENSMUST00000232251.1,ENSMUSG00000004462.7	Tbccd1	ENSMUSG00000004462.7	ENSMUST00000232251.1	protein_coding	chr16:22825989-22856865
chr16	23046958	23047062	+	U6	snRNA	snRNA	chr16	23046958	23046960	+	ENSMUST00000157354.1,ENSMUSG00000087979.1	Gm23715	ENSMUSG00000087979.1	ENSMUST00000157354.1	snRNA	chr16:23046959-23047064
chr16	23191707	23192250	-	Lx8	LINE	L1	chr16	23192075	23192077	+	ENSMUST00000232174.1,ENSMUSG00000068463.4	B630019A10Rik	ENSMUSG00000068463.4	ENSMUST00000232174.1	antisense	chr16:23192076-23203540
chr16	23191707	23192250	-	Lx8	LINE	L1	chr16	23192149	23192151	+	ENSMUST00000232062.1,ENSMUSG00000068463.4	B630019A10Rik	ENSMUSG00000068463.4	ENSMUST00000232062.1	antisense	chr16:23192150-23206583
chr16	23225985	23226048	+	MER5A1	DNA	hAT-Charlie	chr16	23226020	23226022	+	ENSMUST00000152449.7,ENSMUSG00000022885.16	St6gal1	ENSMUSG00000022885.16	ENSMUST00000152449.7	protein_coding	chr16:23226021-23321071
chr16	23225985	23226048	+	MER5A1	DNA	hAT-Charlie	chr16	23226020	23226022	+	ENSMUST00000178797.7,ENSMUSG00000022885.16	St6gal1	ENSMUSG00000022885.16	ENSMUST00000178797.7	protein_coding	chr16:23226021-23360350
chr16	23423734	23423907	+	ERVL-E-int	LTR	ERVL	chr16	23423734	23423736	-	ENSMUST00000122490.1,ENSMUSG00000084439.1	Gm23430	ENSMUSG00000084439.1	ENSMUST00000122490.1	misc_RNA	chr16:23423422-23423735
chr16	23526182	23526891	-	L1MEd	LINE	L1	chr16	23526878	23526880	+	ENSMUST00000210033.1,ENSMUSG00000109783.1	Gm45338	ENSMUSG00000109783.1	ENSMUST00000210033.1	processed_transcript	chr16:23526879-23529829
chr16	23609024	23609273	+	Lx2B2	LINE	L1	chr16	23609056	23609058	+	ENSMUST00000210901.1,ENSMUSG00000033355.6	Rtp4	ENSMUSG00000033355.6	ENSMUST00000210901.1	protein_coding	chr16:23609057-23613736
chr16	24039689	24040327	-	Lx7	LINE	L1	chr16	24039905	24039907	+	ENSMUST00000230357.1,ENSMUSG00000116290.1	Gm49518	ENSMUSG00000116290.1	ENSMUST00000230357.1	lincRNA	chr16:24039906-24060637
chr16	24262117	24263534	+	Lx7	LINE	L1	chr16	24263158	24263160	-	ENSMUST00000230869.1,ENSMUSG00000115869.1	Gm31814	ENSMUSG00000115869.1	ENSMUST00000230869.1	sense_intronic	chr16:24206322-24263159
chr16	24289649	24290042	-	MTA_Mm	LTR	ERVL-MaLR	chr16	24289835	24289837	-	ENSMUST00000230383.1,ENSMUSG00000115852.2	AC169509.1	ENSMUSG00000115852.2	ENSMUST00000230383.1	transcribed_processed_pseudogene	chr16:24122699-24289836
chr16	24380076	24380149	+	(TTG)n	Simple_repeat	Simple_repeat	chr16	24380123	24380125	-	ENSMUST00000231672.1,ENSMUSG00000115852.2	AC169509.1	ENSMUSG00000115852.2	ENSMUST00000231672.1	transcribed_processed_pseudogene	chr16:24270838-24380124
chr16	24393578	24393689	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr16	24393587	24393589	-	ENSMUST00000181640.1,ENSMUSG00000097867.1	Lppos	ENSMUSG00000097867.1	ENSMUST00000181640.1	lincRNA	chr16:24391612-24393588
chr16	24406071	24407383	-	RLTR25A	LTR	ERVK	chr16	24406416	24406418	-	ENSMUST00000157236.1,ENSMUSG00000087861.1	Gm24440	ENSMUSG00000087861.1	ENSMUST00000157236.1	snRNA	chr16:24406355-24406417
chr16	24827826	24827887	-	L2c	LINE	L2	chr16	24827854	24827856	+	ENSMUST00000083560.1,ENSMUSG00000065494.1	Mir28a	ENSMUSG00000065494.1	ENSMUST00000083560.1	miRNA	chr16:24827855-24827940
chr16	24883935	24884173	+	L1_Mur3	LINE	L1	chr16	24884172	24884174	+	ENSMUST00000104414.1,ENSMUSG00000077602.1	Gm22672	ENSMUSG00000077602.1	ENSMUST00000104414.1	snoRNA	chr16:24884173-24884306
chr16	25702747	25703166	-	L1_Mur3	LINE	L1	chr16	25702747	25702749	-	ENSMUST00000083399.1,ENSMUSG00000065333.1	Gm24928	ENSMUSG00000065333.1	ENSMUST00000083399.1	snRNA	chr16:25702642-25702748
chr16	25801915	25801935	+	(GA)n	Simple_repeat	Simple_repeat	chr16	25801915	25801917	+	ENSMUST00000115304.7,ENSMUSG00000022510.14	Trp63	ENSMUSG00000022510.14	ENSMUST00000115304.7	protein_coding	chr16:25801916-25867854
chr16	25801915	25801935	+	(GA)n	Simple_repeat	Simple_repeat	chr16	25801915	25801917	+	ENSMUST00000115305.1,ENSMUSG00000022510.14	Trp63	ENSMUSG00000022510.14	ENSMUST00000115305.1	protein_coding	chr16:25801916-25877144
chr16	25801915	25801935	+	(GA)n	Simple_repeat	Simple_repeat	chr16	25801915	25801917	+	ENSMUST00000040231.12,ENSMUSG00000022510.14	Trp63	ENSMUSG00000022510.14	ENSMUST00000040231.12	protein_coding	chr16:25801916-25892102
chr16	25801915	25801935	+	(GA)n	Simple_repeat	Simple_repeat	chr16	25801915	25801917	+	ENSMUST00000115306.7,ENSMUSG00000022510.14	Trp63	ENSMUSG00000022510.14	ENSMUST00000115306.7	protein_coding	chr16:25801916-25892102
chr16	26014478	26014960	-	LTRIS_Mm	LTR	ERV1	chr16	26014592	26014594	-	ENSMUST00000159161.1,ENSMUSG00000038168.5	P3h2	ENSMUSG00000038168.5	ENSMUST00000159161.1	protein_coding	chr16:25997161-26014593
chr16	26755078	26755591	+	RLTR11A2	LTR	ERVK	chr16	26755490	26755492	-	ENSMUST00000172522.7,ENSMUSG00000092545.7	Gm20319	ENSMUSG00000092545.7	ENSMUST00000172522.7	antisense	chr16:26714446-26755491
chr16	26755078	26755591	+	RLTR11A2	LTR	ERVK	chr16	26755501	26755503	-	ENSMUST00000174385.7,ENSMUSG00000092545.7	Gm20319	ENSMUSG00000092545.7	ENSMUST00000174385.7	antisense	chr16:26714744-26755502
chr16	26755078	26755591	+	RLTR11A2	LTR	ERVK	chr16	26755501	26755503	-	ENSMUST00000173291.1,ENSMUSG00000092545.7	Gm20319	ENSMUSG00000092545.7	ENSMUST00000173291.1	antisense	chr16:26729919-26755502
chr16	27307366	27307522	+	(GA)n	Simple_repeat	Simple_repeat	chr16	27307488	27307490	+	ENSMUST00000066852.8,ENSMUSG00000052276.8	Ostn	ENSMUSG00000052276.8	ENSMUST00000066852.8	protein_coding	chr16:27307489-27351212
chr16	27326302	27326798	-	RMER15	LTR	ERVL	chr16	27326640	27326642	-	ENSMUST00000232586.1,ENSMUSG00000116530.1	AC154512.1	ENSMUSG00000116530.1	ENSMUST00000232586.1	antisense	chr16:27317944-27326641
chr16	28191160	28196587	+	L1Md_T	LINE	L1	chr16	28192074	28192076	-	ENSMUST00000232632.1,ENSMUSG00000022523.10	Fgf12	ENSMUSG00000022523.10	ENSMUST00000232632.1	protein_coding	chr16:28160111-28192075
chr16	29754031	29754407	-	RMER17C	LTR	ERVK	chr16	29754311	29754313	-	ENSMUST00000232037.1,ENSMUSG00000116814.1	AC154438.1	ENSMUSG00000116814.1	ENSMUST00000232037.1	lincRNA	chr16:29750810-29754312
chr16	30141861	30141945	-	5S	rRNA	rRNA	chr16	30141944	30141946	-	ENSMUST00000122495.1,ENSMUSG00000084444.1	n-R5s32	ENSMUSG00000084444.1	ENSMUST00000122495.1	rRNA	chr16:30141843-30141945
chr16	30388470	30388493	+	GC_rich	Low_complexity	Low_complexity	chr16	30388484	30388486	-	ENSMUST00000153656.1,ENSMUSG00000022533.14	Atp13a3	ENSMUSG00000022533.14	ENSMUST00000153656.1	protein_coding	chr16:30361651-30388485
chr16	30405690	30406038	-	MT2B1	LTR	ERVL	chr16	30405974	30405976	-	ENSMUST00000229616.1,ENSMUSG00000022533.14	Atp13a3	ENSMUSG00000022533.14	ENSMUST00000229616.1	protein_coding	chr16:30362579-30405975
chr16	30549936	30550139	-	MIRb	SINE	MIR	chr16	30549945	30549947	-	ENSMUST00000144491.7,ENSMUSG00000022537.18	Tmem44	ENSMUSG00000022537.18	ENSMUST00000144491.7	protein_coding	chr16:30511855-30549946
chr16	30568033	30568222	-	B2_Mm2	SINE	B2	chr16	30568108	30568110	-	ENSMUST00000124858.1,ENSMUSG00000022538.20	Lsg1	ENSMUSG00000022538.20	ENSMUST00000124858.1	protein_coding	chr16:30565030-30568109
chr16	30814161	30814268	+	U6	snRNA	snRNA	chr16	30814161	30814163	+	ENSMUST00000179690.1,ENSMUSG00000095791.1	Gm26295	ENSMUSG00000095791.1	ENSMUST00000179690.1	snRNA	chr16:30814162-30814268
chr16	30849351	30849607	+	MTD	LTR	ERVL-MaLR	chr16	30849455	30849457	+	ENSMUST00000232290.1,ENSMUSG00000116546.1	AC163720.1	ENSMUSG00000116546.1	ENSMUST00000232290.1	lincRNA	chr16:30849456-30851358
chr16	30870186	30870522	+	LTR50	LTR	ERVL	chr16	30870190	30870192	+	ENSMUST00000231959.1,ENSMUSG00000116737.1	AC163720.2	ENSMUSG00000116737.1	ENSMUST00000231959.1	lincRNA	chr16:30870191-30881649
chr16	31261504	31261576	+	ID4_	SINE	ID	chr16	31261504	31261506	+	ENSMUST00000183720.1,ENSMUSG00000098403.1	Gm27415	ENSMUSG00000098403.1	ENSMUST00000183720.1	miRNA	chr16:31261505-31261599
chr16	31413708	31414060	-	RMER17C2	LTR	ERVK	chr16	31414054	31414056	+	ENSMUST00000231871.1,ENSMUSG00000116690.1	AC125371.2	ENSMUSG00000116690.1	ENSMUST00000231871.1	lincRNA	chr16:31414055-31416077
chr16	31663918	31664061	+	G-rich	Low_complexity	Low_complexity	chr16	31663934	31663936	+	ENSMUST00000100001.9,ENSMUSG00000022770.17	Dlg1	ENSMUSG00000022770.17	ENSMUST00000100001.9	protein_coding	chr16:31663935-31873356
chr16	31663918	31664061	+	G-rich	Low_complexity	Low_complexity	chr16	31663954	31663956	+	ENSMUST00000132176.7,ENSMUSG00000022770.17	Dlg1	ENSMUSG00000022770.17	ENSMUST00000132176.7	protein_coding	chr16:31663955-31873349
chr16	31663918	31664061	+	G-rich	Low_complexity	Low_complexity	chr16	31664038	31664040	+	ENSMUST00000064477.13,ENSMUSG00000022770.17	Dlg1	ENSMUSG00000022770.17	ENSMUST00000064477.13	protein_coding	chr16:31664039-31873346
chr16	31679176	31679775	+	L1MC2	LINE	L1	chr16	31679240	31679242	+	ENSMUST00000232316.1,ENSMUSG00000116781.1	AC126055.2	ENSMUSG00000116781.1	ENSMUST00000232316.1	TEC	chr16:31679241-31680609
chr16	31747341	31748304	-	L1_Mur3	LINE	L1	chr16	31747341	31747343	-	ENSMUST00000158386.1,ENSMUSG00000089011.1	Gm24879	ENSMUSG00000089011.1	ENSMUST00000158386.1	snoRNA	chr16:31747200-31747342
chr16	31760850	31761485	+	L1MC1	LINE	L1	chr16	31760965	31760967	+	ENSMUST00000232512.1,ENSMUSG00000116626.1	AC129214.1	ENSMUSG00000116626.1	ENSMUST00000232512.1	TEC	chr16:31760966-31766184
chr16	31982089	31982237	-	B1_Mus1	SINE	Alu	chr16	31982108	31982110	+	ENSMUST00000180144.1,ENSMUSG00000096112.1	Gm26269	ENSMUSG00000096112.1	ENSMUST00000180144.1	miRNA	chr16:31982109-31982234
chr16	32088037	32088156	-	B1F	SINE	Alu	chr16	32088154	32088156	-	ENSMUST00000151250.7,ENSMUSG00000023791.16	Pigx	ENSMUSG00000023791.16	ENSMUST00000151250.7	protein_coding	chr16:32084420-32088155
chr16	32097181	32097842	+	L1Md_F2	LINE	L1	chr16	32097524	32097526	-	ENSMUST00000135677.1,ENSMUSG00000023791.16	Pigx	ENSMUSG00000023791.16	ENSMUST00000135677.1	protein_coding	chr16:32092342-32097525
chr16	32148076	32148444	+	IAPLTR1_Mm	LTR	ERVK	chr16	32148117	32148119	-	ENSMUST00000150250.1,ENSMUSG00000052384.14	Nrros	ENSMUSG00000052384.14	ENSMUST00000150250.1	protein_coding	chr16:32144827-32148118
chr16	32179623	32179910	+	L1MA6	LINE	L1	chr16	32179822	32179824	+	ENSMUST00000231941.1,ENSMUSG00000075269.5	Bex6	ENSMUSG00000075269.5	ENSMUST00000231941.1	protein_coding	chr16:32179823-32186972
chr16	32183637	32184163	+	MT2B2	LTR	ERVL	chr16	32183933	32183935	+	ENSMUST00000231512.1,ENSMUSG00000075269.5	Bex6	ENSMUSG00000075269.5	ENSMUST00000231512.1	protein_coding	chr16:32183934-32186943
chr16	32267566	32268242	-	L1_Mur3	LINE	L1	chr16	32267582	32267584	-	ENSMUST00000158360.1,ENSMUSG00000088985.1	Mir1946a	ENSMUSG00000088985.1	ENSMUST00000158360.1	miRNA	chr16:32267450-32267583
chr16	32332262	32332283	+	GC_rich	Low_complexity	Low_complexity	chr16	32332264	32332266	+	ENSMUST00000232666.1,ENSMUSG00000053774.9	Ubxn7	ENSMUSG00000053774.9	ENSMUST00000232666.1	protein_coding	chr16:32332265-32362300
chr16	32332262	32332283	+	GC_rich	Low_complexity	Low_complexity	chr16	32332267	32332269	+	ENSMUST00000232137.1,ENSMUSG00000053774.9	Ubxn7	ENSMUSG00000053774.9	ENSMUST00000232137.1	protein_coding	chr16:32332268-32387895
chr16	32408428	32408536	+	MT2_Mm	LTR	ERVL	chr16	32408535	32408537	+	ENSMUST00000194813.1,ENSMUSG00000103847.1	Gm20056	ENSMUSG00000103847.1	ENSMUST00000194813.1	processed_pseudogene	chr16:32408536-32409054
chr16	32455954	32456264	-	ORR1A2	LTR	ERVL-MaLR	chr16	32456148	32456150	-	ENSMUST00000232596.1,ENSMUSG00000116714.1	AC087556.1	ENSMUSG00000116714.1	ENSMUST00000232596.1	antisense	chr16:32454598-32456149
chr16	32551477	32551904	+	Lx8	LINE	L1	chr16	32551741	32551743	+	ENSMUST00000232103.1,ENSMUSG00000116957.1	AC140186.1	ENSMUSG00000116957.1	ENSMUST00000232103.1	lincRNA	chr16:32551742-32553682
chr16	32644200	32644294	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr16	32644290	32644292	+	ENSMUST00000124585.1,ENSMUSG00000022791.17	Tnk2	ENSMUSG00000022791.17	ENSMUST00000124585.1	protein_coding	chr16:32644291-32663888
chr16	32829694	32829760	+	B4A	SINE	B4	chr16	32829717	32829719	-	ENSMUST00000152920.1,ENSMUSG00000035629.19	Rubcn	ENSMUSG00000035629.19	ENSMUST00000152920.1	protein_coding	chr16:32827928-32829718
chr16	32829713	32829771	+	B1F	SINE	Alu	chr16	32829717	32829719	-	ENSMUST00000152920.1,ENSMUSG00000035629.19	Rubcn	ENSMUSG00000035629.19	ENSMUST00000152920.1	protein_coding	chr16:32827928-32829718
chr16	32838507	32838656	-	B1_Mus2	SINE	Alu	chr16	32838593	32838595	-	ENSMUST00000135480.7,ENSMUSG00000035629.19	Rubcn	ENSMUSG00000035629.19	ENSMUST00000135480.7	protein_coding	chr16:32823467-32838594
chr16	32902021	32902203	-	B2_Mm2	SINE	B2	chr16	32902098	32902100	+	ENSMUST00000127493.1,ENSMUSG00000022800.14	Fyttd1	ENSMUSG00000022800.14	ENSMUST00000127493.1	protein_coding	chr16:32902099-32905604
chr16	33001902	33002023	+	5S	rRNA	rRNA	chr16	33001902	33001904	+	ENSMUST00000093713.1,ENSMUSG00000070225.1	n-R5s33	ENSMUSG00000070225.1	ENSMUST00000093713.1	rRNA	chr16:33001903-33002021
chr16	33023870	33024007	+	LTR41B	LTR	ERVL	chr16	33023936	33023938	-	ENSMUST00000133219.1,ENSMUSG00000035578.16	Iqcg	ENSMUSG00000035578.16	ENSMUST00000133219.1	protein_coding	chr16:33016950-33023937
chr16	33267518	33267949	+	MTC	LTR	ERVL-MaLR	chr16	33267757	33267759	+	ENSMUST00000231242.1,ENSMUSG00000022808.5	Snx4	ENSMUSG00000022808.5	ENSMUST00000231242.1	protein_coding	chr16:33267758-33269845
chr16	33380826	33380881	+	(GGA)n	Simple_repeat	Simple_repeat	chr16	33380835	33380837	+	ENSMUST00000165418.8,ENSMUSG00000022811.17	Zfp148	ENSMUSG00000022811.17	ENSMUST00000165418.8	protein_coding	chr16:33380836-33504363
chr16	33380826	33380881	+	(GGA)n	Simple_repeat	Simple_repeat	chr16	33380862	33380864	+	ENSMUST00000232023.1,ENSMUSG00000022811.17	Zfp148	ENSMUSG00000022811.17	ENSMUST00000232023.1	protein_coding	chr16:33380863-33497356
chr16	33381059	33381229	+	G-rich	Low_complexity	Low_complexity	chr16	33381129	33381131	+	ENSMUST00000231894.1,ENSMUSG00000022811.17	Zfp148	ENSMUSG00000022811.17	ENSMUST00000231894.1	protein_coding	chr16:33381130-33434886
chr16	33793963	33794113	+	RSINE1	SINE	B4	chr16	33794036	33794038	+	ENSMUST00000115044.7,ENSMUSG00000022824.12	Muc13	ENSMUSG00000022824.12	ENSMUST00000115044.7	protein_coding	chr16:33794037-33819927
chr16	34097058	34097133	+	ID4_	SINE	ID	chr16	34097089	34097091	-	ENSMUST00000114966.7,ENSMUSG00000061751.16	Kalrn	ENSMUSG00000061751.16	ENSMUST00000114966.7	protein_coding	chr16:34013137-34097090
chr16	34704043	34704359	-	RMER19C	LTR	ERVK	chr16	34704042	34704044	+	ENSMUST00000232341.1,ENSMUSG00000022833.7	Ccdc14	ENSMUSG00000022833.7	ENSMUST00000232341.1	protein_coding	chr16:34704043-34708255
chr16	34958967	34959174	+	MamRep434	DNA	TcMar-Tigger	chr16	34958993	34958995	-	ENSMUST00000231694.1,ENSMUSG00000116665.1	AC110166.1	ENSMUSG00000116665.1	ENSMUST00000231694.1	antisense	chr16:34943175-34958994
chr16	35004399	35004799	+	MTC	LTR	ERVL-MaLR	chr16	35004700	35004702	-	ENSMUST00000232548.1,ENSMUSG00000116840.1	AC110166.2	ENSMUSG00000116840.1	ENSMUST00000232548.1	antisense	chr16:34999301-35004701
chr16	35154724	35154896	+	G-rich	Low_complexity	Low_complexity	chr16	35154876	35154878	+	ENSMUST00000114913.2,ENSMUSG00000022840.9	Adcy5	ENSMUSG00000022840.9	ENSMUST00000114913.2	protein_coding	chr16:35154877-35305738
chr16	35234847	35234923	-	U4	snRNA	snRNA	chr16	35234922	35234924	-	ENSMUST00000122632.1,ENSMUSG00000084581.1	Gm25179	ENSMUSG00000084581.1	ENSMUST00000122632.1	snRNA	chr16:35234796-35234923
chr16	35382043	35382244	+	U17	snRNA	snRNA	chr16	35382044	35382046	+	ENSMUST00000082529.1,ENSMUSG00000064463.1	Gm25079	ENSMUSG00000064463.1	ENSMUST00000082529.1	snoRNA	chr16:35382045-35382247
chr16	35413154	35413418	+	L2	LINE	L2	chr16	35413174	35413176	-	ENSMUST00000231779.1,ENSMUSG00000022844.8	Pdia5	ENSMUSG00000022844.8	ENSMUST00000231779.1	protein_coding	chr16:35398319-35413175
chr16	35413154	35413418	+	L2	LINE	L2	chr16	35413184	35413186	-	ENSMUST00000231406.1,ENSMUSG00000022844.8	Pdia5	ENSMUSG00000022844.8	ENSMUST00000231406.1	protein_coding	chr16:35410473-35413185
chr16	35440054	35440573	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr16	35440362	35440364	-	ENSMUST00000178681.1,ENSMUSG00000095160.1	Gm25548	ENSMUSG00000095160.1	ENSMUST00000178681.1	miRNA	chr16:35440254-35440363
chr16	35659401	35659473	+	L2a	LINE	L2	chr16	35659434	35659436	+	ENSMUST00000149097.1,ENSMUSG00000052133.16	Sema5b	ENSMUSG00000052133.16	ENSMUST00000149097.1	protein_coding	chr16:35659435-35660280
chr16	35808891	35809265	+	MTD	LTR	ERVL-MaLR	chr16	35808945	35808947	-	ENSMUST00000180485.1,ENSMUSG00000097914.1	Gm26838	ENSMUSG00000097914.1	ENSMUST00000180485.1	antisense	chr16:35805947-35808946
chr16	35871542	35871566	+	(CA)n	Simple_repeat	Simple_repeat	chr16	35871543	35871545	-	ENSMUST00000042665.8,ENSMUSG00000034422.14	Parp14	ENSMUSG00000034422.14	ENSMUST00000042665.8	protein_coding	chr16:35832874-35871544
chr16	35978471	35978928	+	MT2C_Mm	LTR	ERVL	chr16	35978749	35978751	+	ENSMUST00000172991.1,ENSMUSG00000022905.12	Kpna1	ENSMUSG00000022905.12	ENSMUST00000172991.1	protein_coding	chr16:35978750-36003408
chr16	36089352	36089556	-	RLTR42-int	LTR	ERVK	chr16	36089380	36089382	+	ENSMUST00000231239.1,ENSMUSG00000075229.11	Ccdc58	ENSMUSG00000075229.11	ENSMUST00000231239.1	protein_coding	chr16:36089381-36092106
chr16	36137873	36137974	-	U6	snRNA	snRNA	chr16	36137973	36137975	-	ENSMUST00000157846.1,ENSMUSG00000088471.1	Gm23080	ENSMUSG00000088471.1	ENSMUST00000157846.1	snRNA	chr16:36137872-36137974
chr16	36162015	36162121	-	U6	snRNA	snRNA	chr16	36162120	36162122	-	ENSMUST00000157410.2,ENSMUSG00000096342.1	Gm22885	ENSMUSG00000096342.1	ENSMUST00000157410.2	snRNA	chr16:36162015-36162121
chr16	36188175	36188277	-	U6	snRNA	snRNA	chr16	36188276	36188278	-	ENSMUST00000179667.1,ENSMUSG00000096627.1	Gm25024	ENSMUSG00000096627.1	ENSMUST00000179667.1	snRNA	chr16:36188174-36188277
chr16	36217923	36218026	-	U6	snRNA	snRNA	chr16	36218025	36218027	-	ENSMUST00000178503.1,ENSMUSG00000093822.1	Gm24801	ENSMUSG00000093822.1	ENSMUST00000178503.1	snRNA	chr16:36217922-36218026
chr16	36221268	36221557	+	IAP1-MM_LTR	LTR	ERVK	chr16	36221467	36221469	+	ENSMUST00000187183.6,ENSMUSG00000095620.7	2010005H15Rik	ENSMUSG00000095620.7	ENSMUST00000187183.6	protein_coding	chr16:36221468-36257444
chr16	36221557	36221828	+	IAP1-MM_I-int	LTR	ERVK	chr16	36221561	36221563	+	ENSMUST00000187742.6,ENSMUSG00000095620.7	2010005H15Rik	ENSMUSG00000095620.7	ENSMUST00000187742.6	protein_coding	chr16:36221562-36257427
chr16	36257511	36257613	-	U6	snRNA	snRNA	chr16	36257612	36257614	-	ENSMUST00000179338.1,ENSMUSG00000096823.1	Gm24569	ENSMUSG00000096823.1	ENSMUST00000179338.1	snRNA	chr16:36257510-36257613
chr16	36285434	36285537	-	U6	snRNA	snRNA	chr16	36285536	36285538	-	ENSMUST00000179058.1,ENSMUSG00000096186.1	Gm23306	ENSMUSG00000096186.1	ENSMUST00000179058.1	snRNA	chr16:36285433-36285537
chr16	36312793	36312896	-	U6	snRNA	snRNA	chr16	36312895	36312897	-	ENSMUST00000157239.1,ENSMUSG00000094972.1	Gm25254	ENSMUSG00000094972.1	ENSMUST00000157239.1	snRNA	chr16:36312793-36312896
chr16	36321480	36321582	+	U6	snRNA	snRNA	chr16	36321480	36321482	+	ENSMUST00000157892.1,ENSMUSG00000088517.1	Gm24437	ENSMUSG00000088517.1	ENSMUST00000157892.1	snRNA	chr16:36321481-36321584
chr16	36359217	36359320	+	U6	snRNA	snRNA	chr16	36359217	36359219	+	ENSMUST00000157716.2,ENSMUSG00000095319.1	Gm25465	ENSMUSG00000095319.1	ENSMUST00000157716.2	snRNA	chr16:36359218-36359322
chr16	36386189	36386293	+	U6	snRNA	snRNA	chr16	36386189	36386191	+	ENSMUST00000180163.1,ENSMUSG00000094639.1	Gm24218	ENSMUSG00000094639.1	ENSMUST00000180163.1	snRNA	chr16:36386190-36386294
chr16	36403778	36403884	+	U6	snRNA	snRNA	chr16	36403778	36403780	+	ENSMUST00000157864.2,ENSMUSG00000095033.1	Gm22349	ENSMUSG00000095033.1	ENSMUST00000157864.2	snRNA	chr16:36403779-36403885
chr16	36419086	36419188	+	U6	snRNA	snRNA	chr16	36419086	36419088	+	ENSMUST00000180060.1,ENSMUSG00000094139.1	Gm22263	ENSMUSG00000094139.1	ENSMUST00000180060.1	snRNA	chr16:36419087-36419190
chr16	36438641	36438744	+	U6	snRNA	snRNA	chr16	36438643	36438645	+	ENSMUST00000158492.1,ENSMUSG00000089117.1	Gm25903	ENSMUSG00000089117.1	ENSMUST00000158492.1	snRNA	chr16:36438644-36438746
chr16	36473593	36474019	-	RMER1B	Other	Other	chr16	36473840	36473842	-	ENSMUST00000231458.1,ENSMUSG00000116917.1	AC074229.1	ENSMUSG00000116917.1	ENSMUST00000231458.1	TEC	chr16:36472616-36473841
chr16	36754754	36754946	-	B4A	SINE	B4	chr16	36754757	36754759	-	ENSMUST00000163471.1,ENSMUSG00000022899.9	Slc15a2	ENSMUSG00000022899.9	ENSMUST00000163471.1	protein_coding	chr16:36752316-36754758
chr16	36756601	36756818	+	B3	SINE	B2	chr16	36756703	36756705	-	ENSMUST00000163964.1,ENSMUSG00000022899.9	Slc15a2	ENSMUSG00000022899.9	ENSMUST00000163964.1	protein_coding	chr16:36755898-36756704
chr16	36763216	36763596	-	MTA_Mm	LTR	ERVL-MaLR	chr16	36763392	36763394	-	ENSMUST00000100308.9,ENSMUSG00000022899.9	Slc15a2	ENSMUSG00000022899.9	ENSMUST00000100308.9	protein_coding	chr16:36760075-36763393
chr16	36789735	36789807	+	(AGCTG)n	Simple_repeat	Simple_repeat	chr16	36789737	36789739	+	ENSMUST00000175199.1,ENSMUSG00000095851.1	Gm22617	ENSMUSG00000095851.1	ENSMUST00000175199.1	miRNA	chr16:36789738-36789807
chr16	36828327	36828399	+	C-rich	Low_complexity	Low_complexity	chr16	36828384	36828386	+	ENSMUST00000146272.1,ENSMUSG00000022837.14	Iqcb1	ENSMUSG00000022837.14	ENSMUST00000146272.1	protein_coding	chr16:36828385-36831565
chr16	36846860	36847006	+	B1_Mm	SINE	Alu	chr16	36846988	36846990	+	ENSMUST00000137076.1,ENSMUSG00000022837.14	Iqcb1	ENSMUSG00000022837.14	ENSMUST00000137076.1	protein_coding	chr16:36846989-36851372
chr16	36897096	36897311	+	L1MA4	LINE	L1	chr16	36897188	36897190	-	ENSMUST00000153572.1,ENSMUSG00000084834.1	4930565N06Rik	ENSMUSG00000084834.1	ENSMUST00000153572.1	antisense	chr16:36880519-36897189
chr16	37085471	37086327	-	RMER17D2	LTR	ERVK	chr16	37085914	37085916	+	ENSMUST00000182717.1,ENSMUSG00000034206.15	Polq	ENSMUSG00000034206.15	ENSMUST00000182717.1	protein_coding	chr16:37085915-37095417
chr16	37854780	37854867	+	5S	rRNA	rRNA	chr16	37854781	37854783	+	ENSMUST00000122653.1,ENSMUSG00000084602.1	n-R5s34	ENSMUSG00000084602.1	ENSMUST00000122653.1	rRNA	chr16:37854782-37854897
chr16	37980087	37980229	+	U1	snRNA	snRNA	chr16	37980086	37980088	+	ENSMUST00000083254.1,ENSMUSG00000065188.1	Gm25140	ENSMUSG00000065188.1	ENSMUST00000083254.1	snRNA	chr16:37980087-37980226
chr16	38368791	38368917	-	MER5B	DNA	hAT-Charlie	chr16	38368809	38368811	+	ENSMUST00000141189.1,ENSMUSG00000022803.12	Popdc2	ENSMUSG00000022803.12	ENSMUST00000141189.1	protein_coding	chr16:38368810-38374194
chr16	38417546	38417915	+	MTEa	LTR	ERVL-MaLR	chr16	38417793	38417795	-	ENSMUST00000232224.1,ENSMUSG00000002847.7	Pla1a	ENSMUSG00000002847.7	ENSMUST00000232224.1	protein_coding	chr16:38415317-38417794
chr16	38532357	38532494	+	ID_B1	SINE	B4	chr16	38532493	38532495	-	ENSMUST00000149704.1,ENSMUSG00000034064.14	Poglut1	ENSMUSG00000034064.14	ENSMUST00000149704.1	protein_coding	chr16:38529462-38532494
chr16	38558673	38558761	+	MLTR25A	LTR	ERVK	chr16	38558697	38558699	+	ENSMUST00000163884.7,ENSMUSG00000002845.14	Tmem39a	ENSMUSG00000002845.14	ENSMUST00000163884.7	protein_coding	chr16:38558698-38591190
chr16	38712882	38712903	+	GC_rich	Low_complexity	Low_complexity	chr16	38712898	38712900	-	ENSMUST00000124866.1,ENSMUSG00000022799.4	Arhgap31	ENSMUSG00000022799.4	ENSMUST00000124866.1	protein_coding	chr16:38623163-38712899
chr16	38712882	38712903	+	GC_rich	Low_complexity	Low_complexity	chr16	38712897	38712899	-	ENSMUST00000132697.1,ENSMUSG00000022799.4	Arhgap31	ENSMUSG00000022799.4	ENSMUST00000132697.1	protein_coding	chr16:38637719-38712898
chr16	38892548	38892728	+	ORR1F	LTR	ERVL-MaLR	chr16	38892670	38892672	+	ENSMUST00000210186.1,ENSMUSG00000022790.14	Igsf11	ENSMUSG00000022790.14	ENSMUST00000210186.1	protein_coding	chr16:38892671-38924468
chr16	38927204	38927307	+	U6	snRNA	snRNA	chr16	38927208	38927210	+	ENSMUST00000158982.1,ENSMUSG00000089607.1	Gm22500	ENSMUSG00000089607.1	ENSMUST00000158982.1	snRNA	chr16:38927209-38927307
chr16	39454760	39455248	+	MT2_Mm	LTR	ERVL	chr16	39455014	39455016	+	ENSMUST00000116737.2,ENSMUSG00000095894.1	Gm24795	ENSMUSG00000095894.1	ENSMUST00000116737.2	miRNA	chr16:39455015-39455135
chr16	40306219	40306312	+	U6	snRNA	snRNA	chr16	40306218	40306220	+	ENSMUST00000104347.1,ENSMUSG00000077535.1	Gm22543	ENSMUSG00000077535.1	ENSMUST00000104347.1	snRNA	chr16:40306219-40306312
chr16	41217744	41217835	+	5S	rRNA	rRNA	chr16	41217744	41217746	+	ENSMUST00000174895.1,ENSMUSG00000092636.1	Gm26381	ENSMUSG00000092636.1	ENSMUST00000174895.1	rRNA	chr16:41217745-41217836
chr16	41217744	41217835	+	5S	rRNA	rRNA	chr16	41217776	41217778	+	ENSMUST00000198352.1,ENSMUSG00000104844.1	Gm47276	ENSMUSG00000104844.1	ENSMUST00000198352.1	miRNA	chr16:41217777-41217836
chr16	42340619	42340674	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr16	42340650	42340652	-	ENSMUST00000102817.4,ENSMUSG00000047261.9	Gap43	ENSMUSG00000047261.9	ENSMUST00000102817.4	protein_coding	chr16:42248442-42340651
chr16	42907406	42907576	+	IMPB_01	Satellite	Satellite	chr16	42907541	42907543	+	ENSMUST00000132881.7,ENSMUSG00000022708.16	Zbtb20	ENSMUSG00000022708.16	ENSMUST00000132881.7	protein_coding	chr16:42907542-43569781
chr16	43126232	43126339	+	U6	snRNA	snRNA	chr16	43126232	43126234	+	ENSMUST00000180317.1,ENSMUSG00000094605.1	Gm25873	ENSMUSG00000094605.1	ENSMUST00000180317.1	snRNA	chr16:43126233-43126339
chr16	43362974	43363109	-	LFSINE_Vert	SINE	tRNA	chr16	43363047	43363049	+	ENSMUST00000141941.7,ENSMUSG00000022708.16	Zbtb20	ENSMUSG00000022708.16	ENSMUST00000141941.7	protein_coding	chr16:43363048-43569761
chr16	43796297	43797441	-	Lx8	LINE	L1	chr16	43797416	43797418	+	ENSMUST00000175393.1,ENSMUSG00000093134.1	Gm25996	ENSMUSG00000093134.1	ENSMUST00000175393.1	miRNA	chr16:43797417-43797533
chr16	43926613	43926928	-	ORR1A2	LTR	ERVL-MaLR	chr16	43926808	43926810	-	ENSMUST00000146343.7,ENSMUSG00000022704.15	Qtrt2	ENSMUSG00000022704.15	ENSMUST00000146343.7	protein_coding	chr16:43863030-43926809
chr16	44013832	44013977	-	B1_Mus1	SINE	Alu	chr16	44013851	44013853	+	ENSMUST00000175563.1,ENSMUSG00000093912.1	Mir3470b	ENSMUSG00000093912.1	ENSMUST00000175563.1	miRNA	chr16:44013852-44013977
chr16	44027718	44027986	+	B4A	SINE	B4	chr16	44027944	44027946	-	ENSMUST00000114677.1,ENSMUSG00000036292.14	Gramd1c	ENSMUSG00000036292.14	ENSMUST00000114677.1	protein_coding	chr16:43980355-44027945
chr16	44061501	44062140	+	HERVL74-int	LTR	ERVL	chr16	44061544	44061546	-	ENSMUST00000216149.1,ENSMUSG00000036292.14	Gramd1c	ENSMUSG00000036292.14	ENSMUST00000216149.1	protein_coding	chr16:44028269-44061545
chr16	44139185	44139217	+	(T)n	Simple_repeat	Simple_repeat	chr16	44139195	44139197	-	ENSMUST00000063661.12,ENSMUSG00000052459.13	Atp6v1a	ENSMUSG00000052459.13	ENSMUST00000063661.12	protein_coding	chr16:44085645-44139196
chr16	44173205	44173248	+	GC_rich	Low_complexity	Low_complexity	chr16	44173245	44173247	+	ENSMUST00000119746.7,ENSMUSG00000068284.14	Usf3	ENSMUSG00000068284.14	ENSMUST00000119746.7	protein_coding	chr16:44173246-44227465
chr16	44269417	44269540	+	RSINE1	SINE	B4	chr16	44269531	44269533	-	ENSMUST00000127567.7,ENSMUSG00000022696.17	Sidt1	ENSMUSG00000022696.17	ENSMUST00000127567.7	protein_coding	chr16:44240180-44269532
chr16	44385248	44385412	+	L1MC2	LINE	L1	chr16	44385383	44385385	+	ENSMUST00000126228.1,ENSMUSG00000043065.12	Spice1	ENSMUSG00000043065.12	ENSMUST00000126228.1	protein_coding	chr16:44385384-44387143
chr16	44408550	44408629	+	MER5A	DNA	hAT-Charlie	chr16	44408601	44408603	+	ENSMUST00000142648.1,ENSMUSG00000071550.14	Cfap44	ENSMUSG00000071550.14	ENSMUST00000142648.1	protein_coding	chr16:44408602-44430062
chr16	44469924	44470475	-	RMER15	LTR	ERVL	chr16	44470443	44470445	+	ENSMUST00000127303.1,ENSMUSG00000071550.14	Cfap44	ENSMUSG00000071550.14	ENSMUST00000127303.1	protein_coding	chr16:44470444-44482428
chr16	44558101	44558286	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr16	44558128	44558130	-	ENSMUST00000175305.1,ENSMUSG00000093046.1	Mir3081	ENSMUSG00000093046.1	ENSMUST00000175305.1	miRNA	chr16:44558046-44558129
chr16	44724249	44724355	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr16	44724300	44724302	+	ENSMUST00000048788.13,ENSMUSG00000036208.13	Nepro	ENSMUSG00000036208.13	ENSMUST00000048788.13	protein_coding	chr16:44724301-44737284
chr16	44726135	44726299	-	MER2B	DNA	TcMar-Tigger	chr16	44726166	44726168	+	ENSMUST00000130805.1,ENSMUSG00000036208.13	Nepro	ENSMUSG00000036208.13	ENSMUST00000130805.1	protein_coding	chr16:44726167-44734129
chr16	45642287	45642364	+	(TC)n	Simple_repeat	Simple_repeat	chr16	45642356	45642358	+	ENSMUST00000231331.1,ENSMUSG00000116593.1	AC166572.1	ENSMUSG00000116593.1	ENSMUST00000231331.1	processed_pseudogene	chr16:45642357-45642548
chr16	45689289	45690117	-	MER21C	LTR	ERVL	chr16	45689614	45689616	-	ENSMUST00000169421.8,ENSMUSG00000033177.13	Tmprss7	ENSMUSG00000033177.13	ENSMUST00000169421.8	protein_coding	chr16:45656341-45689615
chr16	45901946	45902147	+	URR1A	DNA	hAT-Charlie	chr16	45901966	45901968	-	ENSMUST00000128365.2,ENSMUSG00000033149.17	Phldb2	ENSMUSG00000033149.17	ENSMUST00000128365.2	protein_coding	chr16:45901041-45901967
chr16	45936285	45936335	-	ID4	SINE	ID	chr16	45936322	45936324	+	ENSMUST00000152070.1,ENSMUSG00000085781.1	Gm15640	ENSMUSG00000085781.1	ENSMUST00000152070.1	antisense	chr16:45936323-45939279
chr16	46018066	46018173	-	U6	snRNA	snRNA	chr16	46018172	46018174	-	ENSMUST00000177997.1,ENSMUSG00000095243.1	Gm24754	ENSMUSG00000095243.1	ENSMUST00000177997.1	snRNA	chr16:46018067-46018173
chr16	46438609	46438650	+	(CAA)n	Simple_repeat	Simple_repeat	chr16	46438632	46438634	-	ENSMUST00000132089.1,ENSMUSG00000022656.15	Nectin3	ENSMUSG00000022656.15	ENSMUST00000132089.1	protein_coding	chr16:46436391-46438633
chr16	46496747	46496818	+	GC_rich	Low_complexity	Low_complexity	chr16	46496771	46496773	-	ENSMUST00000149901.1,ENSMUSG00000022656.15	Nectin3	ENSMUSG00000022656.15	ENSMUST00000149901.1	protein_coding	chr16:46454662-46496772
chr16	46496828	46496856	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	46496851	46496853	-	ENSMUST00000096052.8,ENSMUSG00000022656.15	Nectin3	ENSMUSG00000022656.15	ENSMUST00000096052.8	protein_coding	chr16:46435979-46496852
chr16	46496896	46497031	+	(CCG)n	Simple_repeat	Simple_repeat	chr16	46496966	46496968	-	ENSMUST00000023335.12,ENSMUSG00000022656.15	Nectin3	ENSMUSG00000022656.15	ENSMUST00000023335.12	protein_coding	chr16:46387706-46496967
chr16	46496896	46497031	+	(CCG)n	Simple_repeat	Simple_repeat	chr16	46496966	46496968	-	ENSMUST00000023334.14,ENSMUSG00000022656.15	Nectin3	ENSMUSG00000022656.15	ENSMUST00000023334.14	protein_coding	chr16:46447169-46496967
chr16	47758437	47758577	+	7SK	RNA	RNA	chr16	47758439	47758441	+	ENSMUST00000157458.1,ENSMUSG00000088083.1	Gm25339	ENSMUSG00000088083.1	ENSMUST00000157458.1	misc_RNA	chr16:47758440-47758671
chr16	48158276	48158690	-	BGLII	LTR	ERVK	chr16	48158498	48158500	-	ENSMUST00000232155.1,ENSMUSG00000116755.1	CT025584.1	ENSMUSG00000116755.1	ENSMUST00000232155.1	lincRNA	chr16:48122072-48158499
chr16	48479401	48479721	+	ORR1D1	LTR	ERVL-MaLR	chr16	48479631	48479633	+	ENSMUST00000232256.1,ENSMUSG00000022652.7	Morc1	ENSMUSG00000022652.7	ENSMUST00000232256.1	protein_coding	chr16:48479632-48561640
chr16	48938660	48938680	+	(CAAAAA)n	Simple_repeat	Simple_repeat	chr16	48938673	48938675	-	ENSMUST00000147358.7,ENSMUSG00000064061.13	Dzip3	ENSMUSG00000064061.13	ENSMUST00000147358.7	protein_coding	chr16:48924232-48938674
chr16	48943002	48943105	-	U6	snRNA	snRNA	chr16	48943101	48943103	-	ENSMUST00000083733.1,ENSMUSG00000065667.1	Gm22576	ENSMUSG00000065667.1	ENSMUST00000083733.1	snRNA	chr16:48942999-48943102
chr16	49008264	49008441	-	B2_Mm2	SINE	B2	chr16	49008410	49008412	+	ENSMUST00000130080.7,ENSMUSG00000033031.13	Cip2a	ENSMUSG00000033031.13	ENSMUST00000130080.7	protein_coding	chr16:49008411-49019651
chr16	50429893	50429976	+	(TCC)n	Simple_repeat	Simple_repeat	chr16	50429911	50429913	-	ENSMUST00000131695.7,ENSMUSG00000022641.15	Bbx	ENSMUSG00000022641.15	ENSMUST00000131695.7	protein_coding	chr16:50224847-50429912
chr16	50783458	50783593	+	MER5A1	DNA	hAT-Charlie	chr16	50783477	50783479	+	ENSMUST00000174511.1,ENSMUSG00000092276.2	1700116B05Rik	ENSMUSG00000092276.2	ENSMUST00000174511.1	lincRNA	chr16:50783478-50784065
chr16	50920541	50920648	-	U6	snRNA	snRNA	chr16	50920647	50920649	-	ENSMUST00000178157.1,ENSMUSG00000094301.1	Gm24925	ENSMUSG00000094301.1	ENSMUST00000178157.1	snRNA	chr16:50920542-50920648
chr16	51416941	51417190	-	L1_Mur3	LINE	L1	chr16	51416947	51416949	-	ENSMUST00000232313.1,ENSMUSG00000116855.1	AC154774.1	ENSMUSG00000116855.1	ENSMUST00000232313.1	processed_pseudogene	chr16:51416634-51416948
chr16	51985770	51985908	+	(CA)n	Simple_repeat	Simple_repeat	chr16	51985784	51985786	-	ENSMUST00000231890.1,ENSMUSG00000116725.1	AC154478.1	ENSMUSG00000116725.1	ENSMUST00000231890.1	processed_transcript	chr16:51982484-51985785
chr16	52581408	52581707	+	MusHAL1	LINE	L1	chr16	52581407	52581409	-	ENSMUST00000232449.1,ENSMUSG00000116880.1	AC123624.1	ENSMUSG00000116880.1	ENSMUST00000232449.1	processed_pseudogene	chr16:52581172-52581408
chr16	52813245	52816197	+	Lx2A1	LINE	L1	chr16	52815743	52815745	-	ENSMUST00000232028.1,ENSMUSG00000116611.1	AC122551.1	ENSMUSG00000116611.1	ENSMUST00000232028.1	lincRNA	chr16:52799508-52815744
chr16	52828323	52829608	-	L1_Mur3	LINE	L1	chr16	52829122	52829124	+	ENSMUST00000231992.1,ENSMUSG00000116689.1	AC122551.2	ENSMUSG00000116689.1	ENSMUST00000231992.1	lincRNA	chr16:52829123-52971874
chr16	52828323	52829608	-	L1_Mur3	LINE	L1	chr16	52829129	52829131	+	ENSMUST00000231678.1,ENSMUSG00000116689.1	AC122551.2	ENSMUSG00000116689.1	ENSMUST00000231678.1	lincRNA	chr16:52829130-52878259
chr16	53885317	53885526	-	Lx9	LINE	L1	chr16	53885369	53885371	+	ENSMUST00000116858.1,ENSMUSG00000080508.1	Gm25041	ENSMUSG00000080508.1	ENSMUST00000116858.1	miRNA	chr16:53885370-53885434
chr16	54972431	54972537	+	U6	snRNA	snRNA	chr16	54972430	54972432	+	ENSMUST00000082615.1,ENSMUSG00000064549.1	Gm22977	ENSMUSG00000064549.1	ENSMUST00000082615.1	snRNA	chr16:54972431-54972537
chr16	55297943	55298332	+	Kanga11a	DNA	TcMar-Tc2	chr16	55297985	55297987	-	ENSMUST00000143914.7,ENSMUSG00000064310.10	Zpld1	ENSMUSG00000064310.10	ENSMUST00000143914.7	protein_coding	chr16:55225175-55297986
chr16	55494706	55494851	+	B1_Mur3	SINE	Alu	chr16	55494730	55494732	+	ENSMUST00000175551.1,ENSMUSG00000093292.1	Mir5118	ENSMUSG00000093292.1	ENSMUST00000175551.1	miRNA	chr16:55494731-55494797
chr16	55594781	55594888	-	U6	snRNA	snRNA	chr16	55594887	55594889	-	ENSMUST00000179948.1,ENSMUSG00000094020.1	Gm23003	ENSMUSG00000094020.1	ENSMUST00000179948.1	snRNA	chr16:55594782-55594888
chr16	55779044	55779159	-	U6	snRNA	snRNA	chr16	55779143	55779145	-	ENSMUST00000157825.1,ENSMUSG00000088450.1	Gm26369	ENSMUSG00000088450.1	ENSMUST00000157825.1	snRNA	chr16:55779045-55779144
chr16	55988954	55988989	+	(T)n	Simple_repeat	Simple_repeat	chr16	55988965	55988967	+	ENSMUST00000183440.1,ENSMUSG00000022601.11	Zbtb11	ENSMUSG00000022601.11	ENSMUST00000183440.1	protein_coding	chr16:55988966-55992127
chr16	56005087	56005221	-	B1_Mur2	SINE	Alu	chr16	56005191	56005193	+	ENSMUST00000184618.1,ENSMUSG00000022601.11	Zbtb11	ENSMUSG00000022601.11	ENSMUST00000184618.1	protein_coding	chr16:56005192-56008913
chr16	56048038	56048536	+	MT2_Mm	LTR	ERVL	chr16	56048337	56048339	+	ENSMUST00000201218.1,ENSMUSG00000052917.15	Senp7	ENSMUSG00000052917.15	ENSMUST00000201218.1	protein_coding	chr16:56048338-56076431
chr16	56181339	56183497	+	ORR1A4-int	LTR	ERVL-MaLR	chr16	56182467	56182469	+	ENSMUST00000202272.3,ENSMUSG00000052917.15	Senp7	ENSMUSG00000052917.15	ENSMUST00000202272.3	protein_coding	chr16:56182468-56189984
chr16	56183497	56183847	+	ORR1A4	LTR	ERVL-MaLR	chr16	56183644	56183646	+	ENSMUST00000201391.1,ENSMUSG00000052917.15	Senp7	ENSMUSG00000052917.15	ENSMUST00000201391.1	protein_coding	chr16:56183645-56188244
chr16	56270075	56270324	+	Lx8	LINE	L1	chr16	56270183	56270185	+	ENSMUST00000159842.1,ENSMUSG00000035270.15	Impg2	ENSMUSG00000035270.15	ENSMUST00000159842.1	protein_coding	chr16:56270184-56271040
chr16	56757557	56758273	-	Lx	LINE	L1	chr16	56758264	56758266	+	ENSMUST00000120470.1,ENSMUSG00000082485.1	Gm15693	ENSMUSG00000082485.1	ENSMUST00000120470.1	processed_pseudogene	chr16:56758265-56758901
chr16	57200979	57201472	-	MT2_Mm	LTR	ERVL	chr16	57201232	57201234	-	ENSMUST00000231391.1,ENSMUSG00000022749.8	Tbc1d23	ENSMUSG00000022749.8	ENSMUST00000231391.1	protein_coding	chr16:57192608-57201233
chr16	57200979	57201472	-	MT2_Mm	LTR	ERVL	chr16	57201171	57201173	-	ENSMUST00000231435.1,ENSMUSG00000022749.8	Tbc1d23	ENSMUSG00000022749.8	ENSMUST00000231435.1	protein_coding	chr16:57192665-57201172
chr16	57280644	57281009	+	RLTR44B	LTR	ERVK	chr16	57280889	57280891	+	ENSMUST00000180871.1,ENSMUSG00000097896.1	Gm26800	ENSMUSG00000097896.1	ENSMUST00000180871.1	antisense	chr16:57280890-57281496
chr16	57292718	57293115	-	MLT2D	LTR	ERVL	chr16	57292864	57292866	-	ENSMUST00000119407.7,ENSMUSG00000022753.15	Tmem30c	ENSMUSG00000022753.15	ENSMUST00000119407.7	protein_coding	chr16:57266139-57292865
chr16	57292718	57293115	-	MLT2D	LTR	ERVL	chr16	57292850	57292852	-	ENSMUST00000023434.14,ENSMUSG00000022753.15	Tmem30c	ENSMUSG00000022753.15	ENSMUST00000023434.14	protein_coding	chr16:57266410-57292851
chr16	57292718	57293115	-	MLT2D	LTR	ERVL	chr16	57292850	57292852	-	ENSMUST00000120112.1,ENSMUSG00000022753.15	Tmem30c	ENSMUSG00000022753.15	ENSMUST00000120112.1	protein_coding	chr16:57269309-57292851
chr16	57331903	57332007	-	B4	SINE	B4	chr16	57331950	57331952	+	ENSMUST00000231497.1,ENSMUSG00000116877.1	CT025521.3	ENSMUSG00000116877.1	ENSMUST00000231497.1	antisense	chr16:57331951-57335432
chr16	57811201	57811694	+	MT2_Mm	LTR	ERVL	chr16	57811486	57811488	+	ENSMUST00000232651.1,ENSMUSG00000116920.1	AC156023.3	ENSMUSG00000116920.1	ENSMUST00000232651.1	lincRNA	chr16:57811487-58042341
chr16	58005827	58006246	+	MLT2B1	LTR	ERVL	chr16	58006022	58006024	-	ENSMUST00000231442.1,ENSMUSG00000116770.1	AC156023.2	ENSMUSG00000116770.1	ENSMUST00000231442.1	lincRNA	chr16:57993538-58006023
chr16	58459947	58460738	+	RMER17A2	LTR	ERVK	chr16	58460198	58460200	+	ENSMUST00000150817.7,ENSMUSG00000035107.13	Dcbld2	ENSMUSG00000035107.13	ENSMUST00000150817.7	protein_coding	chr16:58460199-58465827
chr16	58459947	58460738	+	RMER17A2	LTR	ERVK	chr16	58460242	58460244	+	ENSMUST00000130409.7,ENSMUSG00000035107.13	Dcbld2	ENSMUSG00000035107.13	ENSMUST00000130409.7	protein_coding	chr16:58460243-58466724
chr16	58459947	58460738	+	RMER17A2	LTR	ERVK	chr16	58460244	58460246	+	ENSMUST00000135415.1,ENSMUSG00000035107.13	Dcbld2	ENSMUSG00000035107.13	ENSMUST00000135415.1	protein_coding	chr16:58460245-58466787
chr16	58514084	58514337	-	MLT1C	LTR	ERVL-MaLR	chr16	58514183	58514185	-	ENSMUST00000232391.1,ENSMUSG00000022747.17	St3gal6	ENSMUSG00000022747.17	ENSMUST00000232391.1	protein_coding	chr16:58502867-58514184
chr16	58655141	58655478	-	IAPLTR1_Mm	LTR	ERVK	chr16	58655243	58655245	-	ENSMUST00000231734.1,ENSMUSG00000116579.1	AC159200.1	ENSMUSG00000116579.1	ENSMUST00000231734.1	lincRNA	chr16:58651490-58655244
chr16	58929340	58929676	+	L1MA6	LINE	L1	chr16	58929391	58929393	-	ENSMUST00000206168.1,ENSMUSG00000090629.2	Olfr180	ENSMUSG00000090629.2	ENSMUST00000206168.1	protein_coding	chr16:58914285-58929392
chr16	60368854	60369371	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr16	60369162	60369164	-	ENSMUST00000179691.1,ENSMUSG00000096535.1	Gm24755	ENSMUSG00000096535.1	ENSMUST00000179691.1	miRNA	chr16:60369054-60369163
chr16	60698852	60699470	+	RLTR26D_MM	LTR	ERVK	chr16	60699290	60699292	-	ENSMUST00000184926.1,ENSMUSG00000098819.1	Gm27784	ENSMUSG00000098819.1	ENSMUST00000184926.1	miRNA	chr16:60699179-60699291
chr16	61058722	61058786	-	MER130	Unknown	Unknown	chr16	61058760	61058762	+	ENSMUST00000165245.1,ENSMUSG00000090882.1	Gm17065	ENSMUSG00000090882.1	ENSMUST00000165245.1	processed_pseudogene	chr16:61058761-61058999
chr16	61460589	61461059	+	MLTR25A	LTR	ERVK	chr16	61460961	61460963	+	ENSMUST00000169031.1,ENSMUSG00000090448.1	Gm17192	ENSMUSG00000090448.1	ENSMUST00000169031.1	processed_pseudogene	chr16:61460962-61461472
chr16	62097372	62098200	-	L1Md_F2	LINE	L1	chr16	62097460	62097462	+	ENSMUST00000232249.1,ENSMUSG00000116619.1	AC154292.1	ENSMUSG00000116619.1	ENSMUST00000232249.1	lincRNA	chr16:62097461-62104929
chr16	62808290	62808354	+	PB1	SINE	Alu	chr16	62808348	62808350	+	ENSMUST00000102469.1,ENSMUSG00000076424.1	Gm25986	ENSMUSG00000076424.1	ENSMUST00000102469.1	miRNA	chr16:62808349-62808416
chr16	63003295	63003721	-	RMER1B	Other	Other	chr16	63003437	63003439	+	ENSMUST00000231727.1,ENSMUSG00000116574.1	AC163285.1	ENSMUSG00000116574.1	ENSMUST00000231727.1	lincRNA	chr16:63003438-63108522
chr16	63111582	63111693	+	RMER17B	LTR	ERVK	chr16	63111689	63111691	+	ENSMUST00000231788.1,ENSMUSG00000116612.1	AC154179.1	ENSMUSG00000116612.1	ENSMUST00000231788.1	processed_pseudogene	chr16:63111690-63112185
chr16	63217417	63217755	+	Lx9	LINE	L1	chr16	63217441	63217443	-	ENSMUST00000231373.1,ENSMUSG00000116871.1	CT025155.1	ENSMUSG00000116871.1	ENSMUST00000231373.1	lincRNA	chr16:63211290-63217442
chr16	63491888	63492296	-	BGLII	LTR	ERVK	chr16	63492116	63492118	-	ENSMUST00000231817.1,ENSMUSG00000116752.1	AC154568.1	ENSMUSG00000116752.1	ENSMUST00000231817.1	lincRNA	chr16:63468501-63492117
chr16	65431934	65432451	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr16	65432136	65432138	+	ENSMUST00000102245.2,ENSMUSG00000095094.1	Gm23659	ENSMUSG00000095094.1	ENSMUST00000102245.2	miRNA	chr16:65432137-65432246
chr16	65946950	65947121	+	RLTR11C_MM	LTR	ERVK	chr16	65947105	65947107	+	ENSMUST00000231495.1,ENSMUSG00000116671.1	CT010565.3	ENSMUSG00000116671.1	ENSMUST00000231495.1	processed_pseudogene	chr16:65947106-65947427
chr16	66254785	66254892	+	U6	snRNA	snRNA	chr16	66254785	66254787	+	ENSMUST00000179254.1,ENSMUSG00000095506.1	Gm22448	ENSMUSG00000095506.1	ENSMUST00000179254.1	snRNA	chr16:66254786-66254892
chr16	67620754	67620883	+	(CGG)n	Simple_repeat	Simple_repeat	chr16	67620822	67620824	-	ENSMUST00000120594.7,ENSMUSG00000064115.13	Cadm2	ENSMUSG00000064115.13	ENSMUST00000120594.7	protein_coding	chr16:66661745-67620823
chr16	68886696	68893578	-	L1_Mus1	LINE	L1	chr16	68888345	68888347	+	ENSMUST00000231718.1,ENSMUSG00000116562.1	AC139060.1	ENSMUSG00000116562.1	ENSMUST00000231718.1	processed_pseudogene	chr16:68888346-68888595
chr16	68901895	68902136	+	7SK	RNA	RNA	chr16	68901895	68901897	+	ENSMUST00000157663.1,ENSMUSG00000088288.1	Gm23591	ENSMUSG00000088288.1	ENSMUST00000157663.1	misc_RNA	chr16:68901896-68902181
chr16	68998933	68999466	+	Lx5	LINE	L1	chr16	68999445	68999447	+	ENSMUST00000232625.1,ENSMUSG00000116931.1	AC154326.1	ENSMUSG00000116931.1	ENSMUST00000232625.1	processed_pseudogene	chr16:68999446-69000108
chr16	69800233	69800877	-	Lx9	LINE	L1	chr16	69800380	69800382	-	ENSMUST00000201886.1,ENSMUSG00000107073.1	4930428D20Rik	ENSMUSG00000107073.1	ENSMUST00000201886.1	lincRNA	chr16:69796135-69800381
chr16	69863380	69864912	-	Lx2A1	LINE	L1	chr16	69863743	69863745	-	ENSMUST00000076500.13,ENSMUSG00000063163.13	Speer2	ENSMUSG00000063163.13	ENSMUST00000076500.13	protein_coding	chr16:69856874-69863744
chr16	70114675	70114997	+	IAPLTR2b	LTR	ERVK	chr16	70114716	70114718	-	ENSMUST00000231343.1,ENSMUSG00000116588.1	AC154719.1	ENSMUSG00000116588.1	ENSMUST00000231343.1	lincRNA	chr16:70064587-70114717
chr16	70189875	70190014	+	ORR1G	LTR	ERVL-MaLR	chr16	70189961	70189963	+	ENSMUST00000231873.1,ENSMUSG00000116794.1	CT025522.3	ENSMUSG00000116794.1	ENSMUST00000231873.1	processed_pseudogene	chr16:70189962-70190397
chr16	70953146	70954446	+	RMER1B	Other	Other	chr16	70954287	70954289	+	ENSMUST00000232603.1,ENSMUSG00000116800.1	AC154345.1	ENSMUSG00000116800.1	ENSMUST00000232603.1	lincRNA	chr16:70954288-71010913
chr16	71130941	71131222	+	L1_Mus3	LINE	L1	chr16	71131075	71131077	+	ENSMUST00000231591.1,ENSMUSG00000116750.1	CT030693.1	ENSMUSG00000116750.1	ENSMUST00000231591.1	lincRNA	chr16:71131076-71139029
chr16	71174821	71174928	-	U6	snRNA	snRNA	chr16	71174927	71174929	-	ENSMUST00000179817.1,ENSMUSG00000096043.1	Gm24968	ENSMUSG00000096043.1	ENSMUST00000179817.1	snRNA	chr16:71174822-71174928
chr16	71215461	71216109	+	RMER13B	LTR	ERVK	chr16	71215758	71215760	-	ENSMUST00000231759.1,ENSMUSG00000116759.1	AC154555.1	ENSMUSG00000116759.1	ENSMUST00000231759.1	TEC	chr16:71211830-71215759
chr16	71249828	71250906	+	RMER1B	Other	Other	chr16	71249883	71249885	+	ENSMUST00000231541.1,ENSMUSG00000116982.1	AC154242.1	ENSMUSG00000116982.1	ENSMUST00000231541.1	lincRNA	chr16:71249884-71267176
chr16	72234306	72234667	-	MER76	LTR	ERVL	chr16	72234326	72234328	-	ENSMUST00000231977.1,ENSMUSG00000116769.1	AC154782.1	ENSMUSG00000116769.1	ENSMUST00000231977.1	lincRNA	chr16:72226386-72234327
chr16	72976317	72976364	+	T-rich	Low_complexity	Low_complexity	chr16	72976348	72976350	+	ENSMUST00000232545.1,ENSMUSG00000022883.11	Robo1	ENSMUSG00000022883.11	ENSMUST00000232545.1	protein_coding	chr16:72976349-72979218
chr16	73006411	73006495	+	(GA)n	Simple_repeat	Simple_repeat	chr16	73006420	73006422	+	ENSMUST00000232432.1,ENSMUSG00000022883.11	Robo1	ENSMUSG00000022883.11	ENSMUST00000232432.1	protein_coding	chr16:73006421-73008746
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072337	73072339	+	ENSMUST00000232248.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232248.1	processed_transcript	chr16:73072338-73276501
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072341	73072343	+	ENSMUST00000232549.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232549.1	processed_transcript	chr16:73072342-73423667
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072364	73072366	+	ENSMUST00000232059.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232059.1	processed_transcript	chr16:73072365-73138336
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072364	73072366	+	ENSMUST00000231534.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000231534.1	processed_transcript	chr16:73072365-73138336
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072364	73072366	+	ENSMUST00000232006.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232006.1	processed_transcript	chr16:73072365-73423667
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072374	73072376	+	ENSMUST00000232597.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232597.1	processed_transcript	chr16:73072375-73095683
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072374	73072376	+	ENSMUST00000232507.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232507.1	processed_transcript	chr16:73072375-73099495
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072374	73072376	+	ENSMUST00000231838.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000231838.1	processed_transcript	chr16:73072375-73423344
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072403	73072405	+	ENSMUST00000232394.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000232394.1	processed_transcript	chr16:73072404-73423576
chr16	73072095	73073024	+	MTC-int	LTR	ERVL-MaLR	chr16	73072414	73072416	+	ENSMUST00000231943.1,ENSMUSG00000116976.1	AC130529.1	ENSMUSG00000116976.1	ENSMUST00000231943.1	processed_transcript	chr16:73072415-73361004
chr16	74065781	74065933	-	L1Md_A	LINE	L1	chr16	74065852	74065854	-	ENSMUST00000231944.1,ENSMUSG00000116902.1	AC112155.1	ENSMUSG00000116902.1	ENSMUST00000231944.1	TEC	chr16:74062050-74065853
chr16	75398418	75399437	+	Lx2B2	LINE	L1	chr16	75399273	75399275	-	ENSMUST00000232003.1,ENSMUSG00000116867.1	AC129186.2	ENSMUSG00000116867.1	ENSMUST00000232003.1	TEC	chr16:75395598-75399274
chr16	75566538	75570232	+	L1Md_T	LINE	L1	chr16	75567681	75567683	-	ENSMUST00000186809.1,ENSMUSG00000032948.10	Lipi	ENSMUSG00000032948.10	ENSMUST00000186809.1	protein_coding	chr16:75540544-75567682
chr16	75764321	75764445	-	RLTR17B_Mm	LTR	ERVK	chr16	75764321	75764323	+	ENSMUST00000174952.1,ENSMUSG00000092693.1	Gm22923	ENSMUSG00000092693.1	ENSMUST00000174952.1	miRNA	chr16:75764322-75764431
chr16	75767075	75767104	+	(A)n	Simple_repeat	Simple_repeat	chr16	75767103	75767105	-	ENSMUST00000232633.1,ENSMUSG00000032932.15	Hspa13	ENSMUSG00000032932.15	ENSMUST00000232633.1	protein_coding	chr16:75745431-75767104
chr16	75952386	75957561	+	L1Md_T	LINE	L1	chr16	75953331	75953333	-	ENSMUST00000226794.1,ENSMUSG00000022876.18	Samsn1	ENSMUSG00000022876.18	ENSMUST00000226794.1	protein_coding	chr16:75859257-75953332
chr16	76778902	76779295	-	MTA_Mm	LTR	ERVL-MaLR	chr16	76779091	76779093	-	ENSMUST00000208256.1,ENSMUSG00000109333.1	Gm30790	ENSMUSG00000109333.1	ENSMUST00000208256.1	lincRNA	chr16:76751793-76779092
chr16	76888974	76889370	+	MTD	LTR	ERVL-MaLR	chr16	76889280	76889282	-	ENSMUST00000207519.1,ENSMUSG00000100857.2	1700041M19Rik	ENSMUSG00000100857.2	ENSMUST00000207519.1	lincRNA	chr16:76834390-76889281
chr16	77305460	77305633	+	B2_Mm2	SINE	B2	chr16	77305559	77305561	-	ENSMUST00000194532.1,ENSMUSG00000102289.1	Gm31258	ENSMUSG00000102289.1	ENSMUST00000194532.1	TEC	chr16:77302264-77305560
chr16	77381569	77382425	-	Lx2	LINE	L1	chr16	77381949	77381951	+	ENSMUST00000195692.1,ENSMUSG00000103972.1	Gm37466	ENSMUSG00000103972.1	ENSMUST00000195692.1	TEC	chr16:77381950-77382601
chr16	77413429	77413787	-	Lx	LINE	L1	chr16	77413642	77413644	+	ENSMUST00000194937.1,ENSMUSG00000102205.1	9430092D12Rik	ENSMUSG00000102205.1	ENSMUST00000194937.1	TEC	chr16:77413643-77414916
chr16	77485714	77486352	-	Lx5c	LINE	L1	chr16	77486045	77486047	+	ENSMUST00000191736.1,ENSMUSG00000102575.1	Gm37241	ENSMUSG00000102575.1	ENSMUST00000191736.1	TEC	chr16:77486046-77486568
chr16	77539882	77539908	+	AT_rich	Low_complexity	Low_complexity	chr16	77539881	77539883	+	ENSMUST00000193506.1,ENSMUSG00000103932.1	Gm36963	ENSMUSG00000103932.1	ENSMUST00000193506.1	TEC	chr16:77539882-77542205
chr16	77670258	77670631	-	RLTR44A	LTR	ERVK	chr16	77670354	77670356	+	ENSMUST00000183166.7,ENSMUSG00000090386.10	Mir99ahg	ENSMUSG00000090386.10	ENSMUST00000183166.7	processed_transcript	chr16:77670355-77691397
chr16	77845766	77846839	-	L1Md_F2	LINE	L1	chr16	77846603	77846605	+	ENSMUST00000169531.2,ENSMUSG00000091193.2	Gm17333	ENSMUSG00000091193.2	ENSMUST00000169531.2	lincRNA	chr16:77846604-77853084
chr16	78274914	78275230	-	Zaphod	DNA	hAT-Tip100	chr16	78275038	78275040	-	ENSMUST00000210839.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000210839.1	processed_transcript	chr16:78250861-78275039
chr16	78274914	78275230	-	Zaphod	DNA	hAT-Tip100	chr16	78275079	78275081	-	ENSMUST00000211317.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000211317.1	processed_transcript	chr16:78250869-78275080
chr16	78274914	78275230	-	Zaphod	DNA	hAT-Tip100	chr16	78274999	78275001	-	ENSMUST00000231730.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000231730.1	processed_transcript	chr16:78251455-78275000
chr16	78274914	78275230	-	Zaphod	DNA	hAT-Tip100	chr16	78275053	78275055	-	ENSMUST00000210555.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000210555.1	processed_transcript	chr16:78251842-78275054
chr16	78294744	78295348	-	RMER15	LTR	ERVL	chr16	78295014	78295016	-	ENSMUST00000231981.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000231981.1	processed_transcript	chr16:78250868-78295015
chr16	78294744	78295348	-	RMER15	LTR	ERVL	chr16	78294968	78294970	-	ENSMUST00000231644.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000231644.1	processed_transcript	chr16:78251433-78294969
chr16	78294744	78295348	-	RMER15	LTR	ERVL	chr16	78294986	78294988	-	ENSMUST00000232400.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000232400.1	processed_transcript	chr16:78251509-78294987
chr16	78294744	78295348	-	RMER15	LTR	ERVL	chr16	78295149	78295151	-	ENSMUST00000231747.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000231747.1	processed_transcript	chr16:78251511-78295150
chr16	78294744	78295348	-	RMER15	LTR	ERVL	chr16	78295021	78295023	-	ENSMUST00000231226.1,ENSMUSG00000109841.2	E330011O21Rik	ENSMUSG00000109841.2	ENSMUST00000231226.1	processed_transcript	chr16:78251787-78295022
chr16	78624746	78624853	+	U6	snRNA	snRNA	chr16	78624746	78624748	+	ENSMUST00000083459.1,ENSMUSG00000093988.1	Gm24861	ENSMUSG00000093988.1	ENSMUST00000083459.1	snRNA	chr16:78624747-78624853
chr16	78694655	78695039	-	Lx8	LINE	L1	chr16	78695033	78695035	+	ENSMUST00000231496.1,ENSMUSG00000116786.1	AC122375.2	ENSMUSG00000116786.1	ENSMUST00000231496.1	lincRNA	chr16:78695034-78709083
chr16	78930948	78930985	+	(CTG)n	Simple_repeat	Simple_repeat	chr16	78930947	78930949	+	ENSMUST00000114216.1,ENSMUSG00000022860.15	Chodl	ENSMUSG00000022860.15	ENSMUST00000114216.1	protein_coding	chr16:78930948-78947155
chr16	78930948	78930985	+	(CTG)n	Simple_repeat	Simple_repeat	chr16	78930947	78930949	+	ENSMUST00000069148.12,ENSMUSG00000022860.15	Chodl	ENSMUSG00000022860.15	ENSMUST00000069148.12	protein_coding	chr16:78930948-78949904
chr16	78930948	78930985	+	(CTG)n	Simple_repeat	Simple_repeat	chr16	78930947	78930949	+	ENSMUST00000023568.13,ENSMUSG00000022860.15	Chodl	ENSMUSG00000022860.15	ENSMUST00000023568.13	protein_coding	chr16:78930948-78951733
chr16	79999236	79999415	+	RLTR10-int	LTR	ERVK	chr16	79999375	79999377	+	ENSMUST00000191029.1,ENSMUSG00000101810.1	1700066C05Rik	ENSMUSG00000101810.1	ENSMUST00000191029.1	lincRNA	chr16:79999376-80000546
chr16	80684744	80685239	-	Lx4A	LINE	L1	chr16	80685224	80685226	+	ENSMUST00000158513.1,ENSMUSG00000089138.1	Gm24773	ENSMUSG00000089138.1	ENSMUST00000158513.1	snRNA	chr16:80685225-80685323
chr16	81200672	81200725	+	(CCG)n	Simple_repeat	Simple_repeat	chr16	81200696	81200698	+	ENSMUST00000037785.13,ENSMUSG00000022762.18	Ncam2	ENSMUSG00000022762.18	ENSMUST00000037785.13	protein_coding	chr16:81200697-81597805
chr16	81200672	81200725	+	(CCG)n	Simple_repeat	Simple_repeat	chr16	81200696	81200698	+	ENSMUST00000067602.4,ENSMUSG00000022762.18	Ncam2	ENSMUSG00000022762.18	ENSMUST00000067602.4	protein_coding	chr16:81200697-81626828
chr16	81262007	81262168	-	Lx6	LINE	L1	chr16	81262014	81262016	-	ENSMUST00000122722.1,ENSMUSG00000084671.1	Gm26023	ENSMUSG00000084671.1	ENSMUST00000122722.1	misc_RNA	chr16:81261703-81262015
chr16	81853193	81854206	-	L1_Mur2	LINE	L1	chr16	81853192	81853194	-	ENSMUST00000231902.1,ENSMUSG00000116954.1	AC135736.3	ENSMUSG00000116954.1	ENSMUST00000231902.1	processed_pseudogene	chr16:81851175-81853193
chr16	81871229	81871695	+	MT2C_Mm	LTR	ERVL	chr16	81871509	81871511	+	ENSMUST00000231952.1,ENSMUSG00000116909.1	AC135736.2	ENSMUSG00000116909.1	ENSMUST00000231952.1	TEC	chr16:81871510-81873735
chr16	81931896	81931984	+	(TTACG)n	Simple_repeat	Simple_repeat	chr16	81931910	81931912	-	ENSMUST00000232129.1,ENSMUSG00000116865.1	AC122392.2	ENSMUSG00000116865.1	ENSMUST00000232129.1	lincRNA	chr16:81901284-81931911
chr16	82171311	82173354	+	ORR1B1-int	LTR	ERVL-MaLR	chr16	82172290	82172292	+	ENSMUST00000232378.1,ENSMUSG00000116937.1	AC122817.1	ENSMUSG00000116937.1	ENSMUST00000232378.1	lincRNA	chr16:82172291-82194743
chr16	82543228	82543335	+	U6	snRNA	snRNA	chr16	82543228	82543230	+	ENSMUST00000177614.1,ENSMUSG00000094726.1	Gm23355	ENSMUSG00000094726.1	ENSMUST00000177614.1	snRNA	chr16:82543229-82543335
chr16	82827485	82831969	+	L1Md_T	LINE	L1	chr16	82828381	82828383	+	ENSMUST00000177665.1,ENSMUSG00000094030.1	Gm21833	ENSMUSG00000094030.1	ENSMUST00000177665.1	protein_coding	chr16:82828382-82829881
chr16	84057248	84058042	+	Lx3C	LINE	L1	chr16	84057383	84057385	-	ENSMUST00000231610.1,ENSMUSG00000116745.1	AC108826.1	ENSMUSG00000116745.1	ENSMUST00000231610.1	lincRNA	chr16:84033378-84057384
chr16	84219675	84220174	+	Lx3_Mus	LINE	L1	chr16	84219686	84219688	-	ENSMUST00000231505.1,ENSMUSG00000116680.1	AC168066.1	ENSMUSG00000116680.1	ENSMUST00000231505.1	processed_pseudogene	chr16:84219285-84219687
chr16	84294534	84294641	+	U6	snRNA	snRNA	chr16	84294534	84294536	+	ENSMUST00000180104.1,ENSMUSG00000095070.1	Gm24508	ENSMUSG00000095070.1	ENSMUST00000180104.1	snRNA	chr16:84294535-84294641
chr16	84370906	84371171	-	RLTR51A_Mm	LTR	ERVK?	chr16	84371142	84371144	+	ENSMUST00000231366.1,ENSMUSG00000116907.1	AC173486.1	ENSMUSG00000116907.1	ENSMUST00000231366.1	lincRNA	chr16:84371143-84375505
chr16	84619889	84620128	-	7SK	RNA	RNA	chr16	84620127	84620129	-	ENSMUST00000122797.1,ENSMUSG00000084746.1	Gm25292	ENSMUSG00000084746.1	ENSMUST00000122797.1	misc_RNA	chr16:84619807-84620128
chr16	84714098	84714169	-	LFSINE_Vert	SINE	tRNA	chr16	84714139	84714141	+	ENSMUST00000083463.1,ENSMUSG00000065397.1	Mir155	ENSMUSG00000065397.1	ENSMUST00000083463.1	miRNA	chr16:84714140-84714204
chr16	84818065	84818102	+	AT_rich	Low_complexity	Low_complexity	chr16	84818096	84818098	+	ENSMUST00000157624.1,ENSMUSG00000088249.1	Gm25908	ENSMUSG00000088249.1	ENSMUST00000157624.1	rRNA	chr16:84818097-84818194
chr16	84859877	84860084	-	MIRb	SINE	MIR	chr16	84860044	84860046	+	ENSMUST00000139101.1,ENSMUSG00000008976.16	Gabpa	ENSMUSG00000008976.16	ENSMUST00000139101.1	protein_coding	chr16:84860045-84862465
chr16	85553943	85554086	-	MER5A	DNA	hAT-Charlie	chr16	85553942	85553944	-	ENSMUST00000161209.1,ENSMUSG00000089698.1	Gm2541	ENSMUSG00000089698.1	ENSMUST00000161209.1	processed_pseudogene	chr16:85553233-85553943
chr16	86015014	86015456	-	Lx6	LINE	L1	chr16	86015454	86015456	+	ENSMUST00000232085.1,ENSMUSG00000116669.1	AC141482.1	ENSMUSG00000116669.1	ENSMUST00000232085.1	processed_pseudogene	chr16:86015455-86015857
chr16	86235943	86236255	-	RLTR46	LTR	ERVK	chr16	86236170	86236172	+	ENSMUST00000231827.1,ENSMUSG00000116799.1	AC164425.1	ENSMUSG00000116799.1	ENSMUST00000231827.1	lincRNA	chr16:86236171-86269150
chr16	86806250	86806695	-	LTR10_RN	LTR	ERVK	chr16	86806512	86806514	-	ENSMUST00000231875.1,ENSMUSG00000116993.1	AC135964.2	ENSMUSG00000116993.1	ENSMUST00000231875.1	lincRNA	chr16:86770227-86806513
chr16	86806250	86806695	-	LTR10_RN	LTR	ERVK	chr16	86806363	86806365	-	ENSMUST00000232333.1,ENSMUSG00000116993.1	AC135964.2	ENSMUSG00000116993.1	ENSMUST00000232333.1	lincRNA	chr16:86770283-86806364
chr16	87473055	87473105	+	AT_rich	Low_complexity	Low_complexity	chr16	87473088	87473090	+	ENSMUST00000146386.1,ENSMUSG00000025616.14	Usp16	ENSMUSG00000025616.14	ENSMUST00000146386.1	protein_coding	chr16:87473089-87479207
chr16	87621014	87621120	-	U6	snRNA	snRNA	chr16	87621119	87621121	-	ENSMUST00000082736.1,ENSMUSG00000064670.1	Gm22808	ENSMUSG00000064670.1	ENSMUST00000082736.1	snRNA	chr16:87621014-87621120
chr16	88614524	88614610	-	U6	snRNA	snRNA	chr16	88614609	88614611	-	ENSMUST00000157658.1,ENSMUSG00000088283.1	Gm23587	ENSMUSG00000088283.1	ENSMUST00000157658.1	snRNA	chr16:88614527-88614610
chr16	89451496	89451599	-	U6	snRNA	snRNA	chr16	89451598	89451600	-	ENSMUST00000122627.1,ENSMUSG00000084576.1	Gm23655	ENSMUSG00000084576.1	ENSMUST00000122627.1	snRNA	chr16:89451495-89451599
chr16	90345438	90349546	-	IAPEY4_I-int	LTR	ERVK	chr16	90349416	90349418	+	ENSMUST00000231361.1,ENSMUSG00000116989.1	AC131339.4	ENSMUSG00000116989.1	ENSMUST00000231361.1	lincRNA	chr16:90349417-90362580
chr16	90349546	90349872	-	IAPEY4_LTR	LTR	ERVK	chr16	90349641	90349643	-	ENSMUST00000231663.1,ENSMUSG00000116656.1	AC131339.2	ENSMUSG00000116656.1	ENSMUST00000231663.1	processed_transcript	chr16:90341595-90349642
chr16	90349546	90349872	-	IAPEY4_LTR	LTR	ERVK	chr16	90349641	90349643	-	ENSMUST00000231405.1,ENSMUSG00000116656.1	AC131339.2	ENSMUSG00000116656.1	ENSMUST00000231405.1	processed_transcript	chr16:90348725-90349642
chr16	90550601	90550655	+	(TC)n	Simple_repeat	Simple_repeat	chr16	90550608	90550610	-	ENSMUST00000232652.1,ENSMUSG00000116753.1	AC133505.1	ENSMUSG00000116753.1	ENSMUST00000232652.1	lincRNA	chr16:90548633-90550609
chr16	90554047	90554233	-	MIR	SINE	MIR	chr16	90554163	90554165	+	ENSMUST00000060246.1,ENSMUSG00000046119.2	1110008E08Rik	ENSMUSG00000046119.2	ENSMUST00000060246.1	lincRNA	chr16:90554164-90554884
chr16	90554047	90554233	-	MIR	SINE	MIR	chr16	90554163	90554165	+	ENSMUST00000183621.1,ENSMUSG00000046119.2	1110008E08Rik	ENSMUSG00000046119.2	ENSMUST00000183621.1	lincRNA	chr16:90554164-90554886
chr16	90676971	90677055	-	Tigger5b	DNA	TcMar-Tigger	chr16	90676999	90677001	-	ENSMUST00000232154.1,ENSMUSG00000116582.1	AC160759.1	ENSMUSG00000116582.1	ENSMUST00000232154.1	lincRNA	chr16:90667439-90677000
chr16	90826602	90826786	-	B3A	SINE	B2	chr16	90826718	90826720	+	ENSMUST00000138064.7,ENSMUSG00000039903.17	Eva1c	ENSMUSG00000039903.17	ENSMUST00000138064.7	protein_coding	chr16:90826719-90829608
chr16	90826602	90826786	-	B3A	SINE	B2	chr16	90826718	90826720	+	ENSMUST00000232665.1,ENSMUSG00000039903.17	Eva1c	ENSMUSG00000039903.17	ENSMUST00000232665.1	protein_coding	chr16:90826719-90904695
chr16	90826602	90826786	-	B3A	SINE	B2	chr16	90826718	90826720	+	ENSMUST00000232274.1,ENSMUSG00000039903.17	Eva1c	ENSMUSG00000039903.17	ENSMUST00000232274.1	protein_coding	chr16:90826719-90904695
chr16	90826602	90826786	-	B3A	SINE	B2	chr16	90826745	90826747	+	ENSMUST00000099548.9,ENSMUSG00000039903.17	Eva1c	ENSMUSG00000039903.17	ENSMUST00000099548.9	protein_coding	chr16:90826746-90904698
chr16	90925392	90925573	-	URR1A	DNA	hAT-Charlie	chr16	90925531	90925533	+	ENSMUST00000232334.1,ENSMUSG00000116836.1	AC134560.3	ENSMUSG00000116836.1	ENSMUST00000232334.1	TEC	chr16:90925532-90928110
chr16	90953757	90953868	-	B1_Mur4	SINE	Alu	chr16	90953794	90953796	+	ENSMUST00000175515.1,ENSMUSG00000093256.1	Gm22933	ENSMUSG00000093256.1	ENSMUST00000175515.1	miRNA	chr16:90953795-90953868
chr16	91011047	91011084	+	GC_rich	Low_complexity	Low_complexity	chr16	91011060	91011062	-	ENSMUST00000118246.2,ENSMUSG00000022973.18	Synj1	ENSMUSG00000022973.18	ENSMUST00000118246.2	protein_coding	chr16:90960492-91011061
chr16	91011047	91011084	+	GC_rich	Low_complexity	Low_complexity	chr16	91011062	91011064	-	ENSMUST00000156140.1,ENSMUSG00000022973.18	Synj1	ENSMUSG00000022973.18	ENSMUST00000156140.1	protein_coding	chr16:91009314-91011063
chr16	91011091	91011123	+	(TCC)n	Simple_repeat	Simple_repeat	chr16	91011094	91011096	-	ENSMUST00000170853.7,ENSMUSG00000022973.18	Synj1	ENSMUSG00000022973.18	ENSMUST00000170853.7	protein_coding	chr16:90936101-91011095
chr16	91011091	91011123	+	(TCC)n	Simple_repeat	Simple_repeat	chr16	91011112	91011114	-	ENSMUST00000118390.9,ENSMUSG00000022973.18	Synj1	ENSMUSG00000022973.18	ENSMUST00000118390.9	protein_coding	chr16:90936101-91011113
chr16	91011091	91011123	+	(TCC)n	Simple_repeat	Simple_repeat	chr16	91011094	91011096	-	ENSMUST00000130813.2,ENSMUSG00000022973.18	Synj1	ENSMUSG00000022973.18	ENSMUST00000130813.2	protein_coding	chr16:90964264-91011095
chr16	91044156	91044232	+	GC_rich	Low_complexity	Low_complexity	chr16	91044163	91044165	-	ENSMUST00000023698.11,ENSMUSG00000022974.12	Paxbp1	ENSMUSG00000022974.12	ENSMUST00000023698.11	protein_coding	chr16:91014916-91044164
chr16	91135459	91135702	-	RMER1B	Other	Other	chr16	91135475	91135477	-	ENSMUST00000232284.1,ENSMUSG00000116749.1	AC034116.2	ENSMUSG00000116749.1	ENSMUST00000232284.1	processed_pseudogene	chr16:91135275-91135476
chr16	91159047	91159219	+	MTC	LTR	ERVL-MaLR	chr16	91159088	91159090	-	ENSMUST00000231396.1,ENSMUSG00000116763.1	AC034116.3	ENSMUSG00000116763.1	ENSMUST00000231396.1	lincRNA	chr16:91138455-91159089
chr16	91349704	91349784	-	U4	snRNA	snRNA	chr16	91349783	91349785	-	ENSMUST00000083877.1,ENSMUSG00000065811.1	Gm24695	ENSMUSG00000065811.1	ENSMUST00000083877.1	snRNA	chr16:91349702-91349784
chr16	91527466	91527551	-	PB1D10	SINE	Alu	chr16	91527543	91527545	-	ENSMUST00000183385.1,ENSMUSG00000099308.1	Mir6367	ENSMUSG00000099308.1	ENSMUST00000183385.1	miRNA	chr16:91527443-91527544
chr16	91638390	91638578	+	URR1A	DNA	hAT-Charlie	chr16	91638426	91638428	-	ENSMUST00000231702.1,ENSMUSG00000022962.15	Gart	ENSMUSG00000022962.15	ENSMUST00000231702.1	protein_coding	chr16:91635993-91638427
chr16	91688752	91688774	+	GC_rich	Low_complexity	Low_complexity	chr16	91688764	91688766	-	ENSMUST00000123893.7,ENSMUSG00000022960.13	Donson	ENSMUSG00000022960.13	ENSMUST00000123893.7	protein_coding	chr16:91679265-91688765
chr16	91688752	91688774	+	GC_rich	Low_complexity	Low_complexity	chr16	91688764	91688766	-	ENSMUST00000117159.7,ENSMUSG00000022960.13	Donson	ENSMUSG00000022960.13	ENSMUST00000117159.7	protein_coding	chr16:91679265-91688765
chr16	91688752	91688774	+	GC_rich	Low_complexity	Low_complexity	chr16	91688764	91688766	-	ENSMUST00000139324.7,ENSMUSG00000022960.13	Donson	ENSMUSG00000022960.13	ENSMUST00000139324.7	protein_coding	chr16:91679265-91688765
chr16	91688752	91688774	+	GC_rich	Low_complexity	Low_complexity	chr16	91688764	91688766	-	ENSMUST00000114031.7,ENSMUSG00000022960.13	Donson	ENSMUSG00000022960.13	ENSMUST00000114031.7	protein_coding	chr16:91679265-91688765
chr16	91688752	91688774	+	GC_rich	Low_complexity	Low_complexity	chr16	91688769	91688771	-	ENSMUST00000023682.11,ENSMUSG00000022960.13	Donson	ENSMUSG00000022960.13	ENSMUST00000023682.11	protein_coding	chr16:91679265-91688770
chr16	91729283	91729405	+	G-rich	Low_complexity	Low_complexity	chr16	91729352	91729354	+	ENSMUST00000113999.7,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000113999.7	protein_coding	chr16:91729353-91871651
chr16	91729283	91729405	+	G-rich	Low_complexity	Low_complexity	chr16	91729352	91729354	+	ENSMUST00000064797.11,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000064797.11	protein_coding	chr16:91729353-91913988
chr16	91729283	91729405	+	G-rich	Low_complexity	Low_complexity	chr16	91729352	91729354	+	ENSMUST00000114002.8,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000114002.8	protein_coding	chr16:91729353-91920597
chr16	91729283	91729405	+	G-rich	Low_complexity	Low_complexity	chr16	91729369	91729371	+	ENSMUST00000095909.9,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000095909.9	protein_coding	chr16:91729370-91832353
chr16	91729283	91729405	+	G-rich	Low_complexity	Low_complexity	chr16	91729370	91729372	+	ENSMUST00000056482.13,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000056482.13	protein_coding	chr16:91729371-91871655
chr16	91729283	91729405	+	G-rich	Low_complexity	Low_complexity	chr16	91729372	91729374	+	ENSMUST00000113996.7,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000113996.7	protein_coding	chr16:91729373-91871653
chr16	91755732	91756310	+	MT2B2	LTR	ERVL	chr16	91756098	91756100	+	ENSMUST00000231974.1,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000231974.1	protein_coding	chr16:91756099-91803070
chr16	91903966	91904131	-	ORR1B1	LTR	ERVL-MaLR	chr16	91904028	91904030	+	ENSMUST00000231852.1,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000231852.1	protein_coding	chr16:91904029-91912336
chr16	91903966	91904131	-	ORR1B1	LTR	ERVL-MaLR	chr16	91904062	91904064	+	ENSMUST00000232198.1,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000232198.1	protein_coding	chr16:91904063-91912200
chr16	91903966	91904131	-	ORR1B1	LTR	ERVL-MaLR	chr16	91904070	91904072	+	ENSMUST00000231735.1,ENSMUSG00000022957.20	Itsn1	ENSMUSG00000022957.20	ENSMUST00000231735.1	protein_coding	chr16:91904071-91912336
chr16	91921308	91921415	-	U6	snRNA	snRNA	chr16	91921414	91921416	-	ENSMUST00000178139.1,ENSMUSG00000096895.1	Gm25245	ENSMUSG00000096895.1	ENSMUST00000178139.1	snRNA	chr16:91921309-91921415
chr16	91926633	91926787	+	B3	SINE	B2	chr16	91926683	91926685	-	ENSMUST00000150642.7,ENSMUSG00000022956.11	Atp5o	ENSMUSG00000022956.11	ENSMUST00000150642.7	protein_coding	chr16:91925219-91926684
chr16	91944057	91944207	+	B2_Mm2	SINE	B2	chr16	91944147	91944149	-	ENSMUST00000184087.1,ENSMUSG00000099268.1	Gm27773	ENSMUSG00000099268.1	ENSMUST00000184087.1	miRNA	chr16:91944071-91944148
chr16	92042675	92042748	+	U6	snRNA	snRNA	chr16	92042676	92042678	+	ENSMUST00000158668.1,ENSMUSG00000089293.1	Gm23210	ENSMUSG00000089293.1	ENSMUST00000158668.1	snRNA	chr16:92042677-92042774
chr16	92125915	92126999	+	MTC-int	LTR	ERVL-MaLR	chr16	92126287	92126289	+	ENSMUST00000231220.1,ENSMUSG00000116747.1	AC144408.2	ENSMUSG00000116747.1	ENSMUST00000231220.1	lincRNA	chr16:92126288-92186528
chr16	92154240	92154279	+	(CA)n	Simple_repeat	Simple_repeat	chr16	92154246	92154248	+	ENSMUST00000232211.1,ENSMUSG00000116608.1	AC144408.1	ENSMUSG00000116608.1	ENSMUST00000232211.1	lincRNA	chr16:92154247-92156291
chr16	92207488	92207604	+	(GGA)n	Simple_repeat	Simple_repeat	chr16	92207487	92207489	-	ENSMUST00000231551.1,ENSMUSG00000116878.1	AC164165.2	ENSMUSG00000116878.1	ENSMUST00000231551.1	processed_transcript	chr16:92202901-92207488
chr16	92470818	92471123	+	ORR1A2	LTR	ERVL-MaLR	chr16	92470866	92470868	-	ENSMUST00000232197.1,ENSMUSG00000022951.16	Rcan1	ENSMUSG00000022951.16	ENSMUST00000232197.1	protein_coding	chr16:92392510-92470867
chr16	92861786	92862141	-	ORR1E	LTR	ERVL-MaLR	chr16	92861876	92861878	+	ENSMUST00000231501.1,ENSMUSG00000116805.1	CT025774.1	ENSMUSG00000116805.1	ENSMUST00000231501.1	lincRNA	chr16:92861877-92874472
chr16	93072650	93072844	-	B3	SINE	B2	chr16	93072754	93072756	+	ENSMUST00000184529.1,ENSMUSG00000098983.1	Gm28003	ENSMUSG00000098983.1	ENSMUST00000184529.1	miRNA	chr16:93072755-93072822
chr16	93458846	93459178	+	RLTR51B_Mm	LTR	ERVK?	chr16	93458855	93458857	-	ENSMUST00000231275.1,ENSMUSG00000099968.7	1700029J03Rik	ENSMUSG00000099968.7	ENSMUST00000231275.1	lincRNA	chr16:93396809-93458856
chr16	93458846	93459178	+	RLTR51B_Mm	LTR	ERVK?	chr16	93458871	93458873	-	ENSMUST00000185803.1,ENSMUSG00000099968.7	1700029J03Rik	ENSMUSG00000099968.7	ENSMUST00000185803.1	lincRNA	chr16:93396815-93458872
chr16	93583958	93584022	+	AT_rich	Low_complexity	Low_complexity	chr16	93584007	93584009	-	ENSMUST00000233912.1,ENSMUSG00000022948.16	Setd4	ENSMUSG00000022948.16	ENSMUST00000233912.1	protein_coding	chr16:93583562-93584008
chr16	93586537	93586765	+	MTC	LTR	ERVL-MaLR	chr16	93586630	93586632	-	ENSMUST00000233981.1,ENSMUSG00000022948.16	Setd4	ENSMUSG00000022948.16	ENSMUST00000233981.1	protein_coding	chr16:93583460-93586631
chr16	93586537	93586765	+	MTC	LTR	ERVL-MaLR	chr16	93586608	93586610	-	ENSMUST00000233517.1,ENSMUSG00000022948.16	Setd4	ENSMUSG00000022948.16	ENSMUST00000233517.1	protein_coding	chr16:93583608-93586609
chr16	93588909	93589117	+	MTA_Mm	LTR	ERVL-MaLR	chr16	93589070	93589072	-	ENSMUST00000152520.1,ENSMUSG00000022948.16	Setd4	ENSMUSG00000022948.16	ENSMUST00000152520.1	protein_coding	chr16:93583460-93589071
chr16	93593338	93594011	+	MTC-int	LTR	ERVL-MaLR	chr16	93593489	93593491	-	ENSMUST00000233419.1,ENSMUSG00000022948.16	Setd4	ENSMUSG00000022948.16	ENSMUST00000233419.1	protein_coding	chr16:93590872-93593490
chr16	93653625	93654367	+	RMER12C	LTR	ERVK	chr16	93654323	93654325	+	ENSMUST00000122642.1,ENSMUSG00000084591.1	Gm22344	ENSMUSG00000084591.1	ENSMUST00000122642.1	misc_RNA	chr16:93654324-93654601
chr16	93654323	93654550	+	7SK	RNA	RNA	chr16	93654323	93654325	+	ENSMUST00000122642.1,ENSMUSG00000084591.1	Gm22344	ENSMUSG00000084591.1	ENSMUST00000122642.1	misc_RNA	chr16:93654324-93654601
chr16	93832974	93833076	+	PB1D11	SINE	Alu	chr16	93833018	93833020	-	ENSMUST00000231503.1,ENSMUSG00000116927.1	AC168220.3	ENSMUSG00000116927.1	ENSMUST00000231503.1	antisense	chr16:93808540-93833019
chr16	93888635	93888999	+	ORR1A4	LTR	ERVL-MaLR	chr16	93888733	93888735	+	ENSMUST00000232065.1,ENSMUSG00000116890.1	AC168220.2	ENSMUSG00000116890.1	ENSMUST00000232065.1	sense_intronic	chr16:93888734-93890147
chr16	93982490	93982583	-	ORR1E	LTR	ERVL-MaLR	chr16	93982551	93982553	-	ENSMUST00000231886.1,ENSMUSG00000116681.1	AC168220.1	ENSMUSG00000116681.1	ENSMUST00000231886.1	sense_intronic	chr16:93981444-93982552
chr16	94174941	94175138	+	ORR1F	LTR	ERVL-MaLR	chr16	94174999	94175001	-	ENSMUST00000227618.1,ENSMUSG00000040820.16	Hlcs	ENSMUSG00000040820.16	ENSMUST00000227618.1	protein_coding	chr16:94133003-94175000
chr16	94205619	94205759	-	ID_B1	SINE	B4	chr16	94205633	94205635	-	ENSMUST00000227447.1,ENSMUSG00000040820.16	Hlcs	ENSMUSG00000040820.16	ENSMUST00000227447.1	protein_coding	chr16:94131939-94205634
chr16	94245951	94246284	-	ORR1D2	LTR	ERVL-MaLR	chr16	94246084	94246086	-	ENSMUST00000228910.1,ENSMUSG00000040820.16	Hlcs	ENSMUSG00000040820.16	ENSMUST00000228910.1	protein_coding	chr16:94128882-94246085
chr16	94290257	94290302	+	GC_rich	Low_complexity	Low_complexity	chr16	94290285	94290287	-	ENSMUST00000227141.1,ENSMUSG00000040820.16	Hlcs	ENSMUSG00000040820.16	ENSMUST00000227141.1	protein_coding	chr16:94130412-94290286
chr16	94290257	94290302	+	GC_rich	Low_complexity	Low_complexity	chr16	94290269	94290271	-	ENSMUST00000226776.1,ENSMUSG00000040820.16	Hlcs	ENSMUSG00000040820.16	ENSMUST00000226776.1	protein_coding	chr16:94229569-94290270
chr16	94440057	94440348	+	ORR1A2	LTR	ERVL-MaLR	chr16	94440092	94440094	+	ENSMUST00000139607.1,ENSMUSG00000040785.19	Ttc3	ENSMUSG00000040785.19	ENSMUST00000139607.1	protein_coding	chr16:94440093-94448745
chr16	94466430	94466545	-	B1_Mur2	SINE	Alu	chr16	94466521	94466523	+	ENSMUST00000129536.1,ENSMUSG00000040785.19	Ttc3	ENSMUSG00000040785.19	ENSMUST00000129536.1	protein_coding	chr16:94466522-94468217
chr16	94856418	94856722	-	ORR1F	LTR	ERVL-MaLR	chr16	94856671	94856673	-	ENSMUST00000232562.1,ENSMUSG00000043301.16	Kcnj6	ENSMUSG00000043301.16	ENSMUST00000232562.1	protein_coding	chr16:94761653-94856672
chr16	94856418	94856722	-	ORR1F	LTR	ERVL-MaLR	chr16	94856679	94856681	-	ENSMUST00000165538.2,ENSMUSG00000043301.16	Kcnj6	ENSMUSG00000043301.16	ENSMUST00000165538.2	protein_coding	chr16:94822532-94856680
chr16	94869460	94869535	+	(AGCTG)n	Simple_repeat	Simple_repeat	chr16	94869463	94869465	+	ENSMUST00000175509.1,ENSMUSG00000095435.1	Gm22745	ENSMUSG00000095435.1	ENSMUST00000175509.1	miRNA	chr16:94869464-94869533
chr16	95011083	95017292	-	L1Md_T	LINE	L1	chr16	95016369	95016371	+	ENSMUST00000181507.1,ENSMUSG00000097551.1	Gm7976	ENSMUSG00000097551.1	ENSMUST00000181507.1	lincRNA	chr16:95016370-95067017
chr16	95171436	95172092	-	L1Md_F2	LINE	L1	chr16	95171509	95171511	-	ENSMUST00000231527.1,ENSMUSG00000116601.1	AC154546.1	ENSMUSG00000116601.1	ENSMUST00000231527.1	TEC	chr16:95169838-95171510
chr16	95257984	95258141	+	C-rich	Low_complexity	Low_complexity	chr16	95258035	95258037	+	ENSMUST00000113859.7,ENSMUSG00000062609.14	Kcnj15	ENSMUSG00000062609.14	ENSMUST00000113859.7	protein_coding	chr16:95258036-95300211
chr16	95279134	95279260	-	L2c	LINE	L2	chr16	95279192	95279194	+	ENSMUST00000138329.1,ENSMUSG00000062609.14	Kcnj15	ENSMUSG00000062609.14	ENSMUST00000138329.1	protein_coding	chr16:95279193-95291897
chr16	95301652	95302227	+	RLTR34D_MM	LTR	ERVK	chr16	95301660	95301662	-	ENSMUST00000232622.1,ENSMUSG00000116716.1	AC154691.1	ENSMUSG00000116716.1	ENSMUST00000232622.1	antisense	chr16:95297356-95301661
chr16	95355246	95355696	-	MTD	LTR	ERVL-MaLR	chr16	95355675	95355677	-	ENSMUST00000232605.1,ENSMUSG00000116720.1	AC154546.2	ENSMUSG00000116720.1	ENSMUST00000232605.1	antisense	chr16:95237771-95355676
chr16	95706329	95706353	+	(CAAA)n	Simple_repeat	Simple_repeat	chr16	95706338	95706340	+	ENSMUST00000232792.1,ENSMUSG00000022895.16	Ets2	ENSMUSG00000022895.16	ENSMUST00000232792.1	protein_coding	chr16:95706339-95716072
chr16	96017801	96017824	+	(A)n	Simple_repeat	Simple_repeat	chr16	96017804	96017806	-	ENSMUST00000232801.1,ENSMUSG00000022914.17	Brwd1	ENSMUSG00000022914.17	ENSMUST00000232801.1	protein_coding	chr16:96016108-96017805
chr16	96040852	96040987	+	RSINE1	SINE	B4	chr16	96040967	96040969	-	ENSMUST00000184285.1,ENSMUSG00000098733.1	Gm27833	ENSMUSG00000098733.1	ENSMUST00000184285.1	miRNA	chr16:96040845-96040968
chr16	96097084	96097341	+	ORR1A2	LTR	ERVL-MaLR	chr16	96097203	96097205	+	ENSMUST00000232779.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000232779.1	lincRNA	chr16:96097204-96114862
chr16	96097084	96097341	+	ORR1A2	LTR	ERVL-MaLR	chr16	96097204	96097206	+	ENSMUST00000233834.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000233834.1	lincRNA	chr16:96097205-96114673
chr16	96097084	96097341	+	ORR1A2	LTR	ERVL-MaLR	chr16	96097204	96097206	+	ENSMUST00000233230.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000233230.1	lincRNA	chr16:96097205-96114862
chr16	96097084	96097341	+	ORR1A2	LTR	ERVL-MaLR	chr16	96097204	96097206	+	ENSMUST00000233851.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000233851.1	lincRNA	chr16:96097205-96114862
chr16	96097341	96098264	-	RMER17B	LTR	ERVK	chr16	96098114	96098116	+	ENSMUST00000233380.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000233380.1	lincRNA	chr16:96098115-96113824
chr16	96097341	96098264	-	RMER17B	LTR	ERVK	chr16	96098145	96098147	+	ENSMUST00000233125.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000233125.1	lincRNA	chr16:96098146-96114862
chr16	96098328	96098428	-	B3A	SINE	B2	chr16	96098353	96098355	+	ENSMUST00000233464.1,ENSMUSG00000117270.1	AC144797.1	ENSMUSG00000117270.1	ENSMUST00000233464.1	lincRNA	chr16:96098354-96114748
chr16	96125314	96125428	-	B1_Mus1	SINE	Alu	chr16	96125338	96125340	-	ENSMUST00000233638.1,ENSMUSG00000040681.16	Hmgn1	ENSMUSG00000040681.16	ENSMUST00000233638.1	protein_coding	chr16:96122234-96125339
chr16	96223798	96224139	-	IMPB_01	Satellite	Satellite	chr16	96223839	96223841	+	ENSMUST00000233577.1,ENSMUSG00000040666.19	Sh3bgr	ENSMUSG00000040666.19	ENSMUST00000233577.1	protein_coding	chr16:96223840-96228933
chr16	96918278	96918799	+	L1M2	LINE	L1	chr16	96918731	96918733	+	ENSMUST00000232934.1,ENSMUSG00000117324.1	AC167169.1	ENSMUSG00000117324.1	ENSMUST00000232934.1	antisense	chr16:96918732-96922160
chr16	96918278	96918799	+	L1M2	LINE	L1	chr16	96918756	96918758	+	ENSMUST00000232718.1,ENSMUSG00000117324.1	AC167169.1	ENSMUSG00000117324.1	ENSMUST00000232718.1	antisense	chr16:96918757-96922160
chr16	97800111	97800624	+	L1M2	LINE	L1	chr16	97800301	97800303	-	ENSMUST00000131951.7,ENSMUSG00000014039.18	Prdm15	ENSMUSG00000014039.18	ENSMUST00000131951.7	protein_coding	chr16:97792332-97800302
chr16	97864896	97865200	-	RLTR17B_Mm	LTR	ERVK	chr16	97864992	97864994	-	ENSMUST00000232542.1,ENSMUSG00000045975.8	C2cd2	ENSMUSG00000045975.8	ENSMUST00000232542.1	protein_coding	chr16:97859220-97864993
chr16	98008405	98010091	+	MurSatRep1	Unknown	Unknown	chr16	98008628	98008630	+	ENSMUST00000113729.2,ENSMUSG00000080717.10	B230307C23Rik	ENSMUSG00000080717.10	ENSMUST00000113729.2	protein_coding	chr16:98008629-98009008
chr17	3228195	3228589	+	MTA_Mm	LTR	ERVL-MaLR	chr17	3228396	3228398	+	ENSMUST00000231987.1,ENSMUSG00000116858.1	AC165953.2	ENSMUSG00000116858.1	ENSMUST00000231987.1	lincRNA	chr17:3228397-3308845
chr17	4082095	4087259	+	L1Md_A	LINE	L1	chr17	4082994	4082996	-	ENSMUST00000231647.1,ENSMUSG00000116975.1	AC097366.1	ENSMUSG00000116975.1	ENSMUST00000231647.1	lincRNA	chr17:4044658-4082995
chr17	4122040	4122323	+	B4A	SINE	B4	chr17	4122101	4122103	-	ENSMUST00000231354.1,ENSMUSG00000116615.1	AC098641.1	ENSMUSG00000116615.1	ENSMUST00000231354.1	processed_transcript	chr17:4119446-4122102
chr17	4122040	4122323	+	B4A	SINE	B4	chr17	4122112	4122114	-	ENSMUST00000231319.1,ENSMUSG00000116615.1	AC098641.1	ENSMUSG00000116615.1	ENSMUST00000231319.1	processed_transcript	chr17:4120217-4122113
chr17	4678019	4678126	+	U6	snRNA	snRNA	chr17	4678019	4678021	+	ENSMUST00000180078.1,ENSMUSG00000096200.1	Gm23186	ENSMUSG00000096200.1	ENSMUST00000180078.1	snRNA	chr17:4678020-4678126
chr17	4854342	4854743	+	MER21B	LTR	ERVL	chr17	4854481	4854483	-	ENSMUST00000232083.1,ENSMUSG00000116813.1	AC140300.3	ENSMUSG00000116813.1	ENSMUST00000232083.1	lincRNA	chr17:4851698-4854482
chr17	4892652	4893015	-	RLTR31C_MM	LTR	ERVK	chr17	4892986	4892988	-	ENSMUST00000232440.1,ENSMUSG00000116813.1	AC140300.3	ENSMUSG00000116813.1	ENSMUST00000232440.1	lincRNA	chr17:4852013-4892987
chr17	5388659	5388768	+	G-rich	Low_complexity	Low_complexity	chr17	5388762	5388764	+	ENSMUST00000190865.1,ENSMUSG00000101133.1	Gm29050	ENSMUSG00000101133.1	ENSMUST00000190865.1	antisense	chr17:5388763-5417396
chr17	5403964	5404345	+	MT2A	LTR	ERVL	chr17	5404120	5404122	+	ENSMUST00000190732.1,ENSMUSG00000101133.1	Gm29050	ENSMUSG00000101133.1	ENSMUST00000190732.1	antisense	chr17:5404121-5419652
chr17	5421396	5421798	+	MTA_Mm	LTR	ERVL-MaLR	chr17	5421463	5421465	+	ENSMUST00000175169.1,ENSMUSG00000095747.1	Gm22475	ENSMUSG00000095747.1	ENSMUST00000175169.1	miRNA	chr17:5421464-5421565
chr17	5799122	5799528	+	MER63B	DNA	hAT-Blackjack	chr17	5799490	5799492	+	ENSMUST00000181484.1,ENSMUSG00000096965.7	3300005D01Rik	ENSMUSG00000096965.7	ENSMUST00000181484.1	lincRNA	chr17:5799491-5803240
chr17	5941176	5941355	+	(GGA)n	Simple_repeat	Simple_repeat	chr17	5941279	5941281	+	ENSMUST00000115791.9,ENSMUSG00000023805.17	Synj2	ENSMUSG00000023805.17	ENSMUST00000115791.9	protein_coding	chr17:5941280-6039168
chr17	6147418	6147506	+	5S	rRNA	rRNA	chr17	6147418	6147420	+	ENSMUST00000104601.1,ENSMUSG00000077789.1	n-R5s26	ENSMUSG00000077789.1	ENSMUST00000104601.1	rRNA	chr17:6147419-6147540
chr17	6314173	6314363	-	B2_Mm1t	SINE	B2	chr17	6314198	6314200	+	ENSMUST00000181052.1,ENSMUSG00000097723.1	Gm26848	ENSMUSG00000097723.1	ENSMUST00000181052.1	lincRNA	chr17:6314199-6493180
chr17	6449520	6450451	-	RLTR13B3	LTR	ERVK	chr17	6449744	6449746	-	ENSMUST00000180035.7,ENSMUSG00000096780.7	Tmem181b-ps	ENSMUSG00000096780.7	ENSMUST00000180035.7	transcribed_unprocessed_pseudogene	chr17:6438524-6449745
chr17	6662843	6663361	-	Lx4A	LINE	L1	chr17	6663013	6663015	+	ENSMUST00000162013.3,ENSMUSG00000041831.16	Sytl3	ENSMUSG00000041831.16	ENSMUST00000162013.3	protein_coding	chr17:6663014-6680505
chr17	6675764	6676177	-	MTE2a	LTR	ERVL-MaLR	chr17	6675920	6675922	+	ENSMUST00000232151.1,ENSMUSG00000041831.16	Sytl3	ENSMUSG00000041831.16	ENSMUST00000232151.1	protein_coding	chr17:6675921-6687400
chr17	6705818	6705835	+	B2_Mm1t	SINE	B2	chr17	6705829	6705831	+	ENSMUST00000161118.7,ENSMUSG00000041831.16	Sytl3	ENSMUSG00000041831.16	ENSMUST00000161118.7	protein_coding	chr17:6705830-6737836
chr17	6705818	6705835	+	B2_Mm1t	SINE	B2	chr17	6705829	6705831	+	ENSMUST00000232362.1,ENSMUSG00000041831.16	Sytl3	ENSMUSG00000041831.16	ENSMUST00000232362.1	protein_coding	chr17:6705830-6737836
chr17	6705818	6705835	+	B2_Mm1t	SINE	B2	chr17	6705829	6705831	+	ENSMUST00000160483.8,ENSMUSG00000041831.16	Sytl3	ENSMUSG00000041831.16	ENSMUST00000160483.8	protein_coding	chr17:6705830-6738044
chr17	6990639	6990833	-	B3	SINE	B2	chr17	6990655	6990657	+	ENSMUST00000232029.1,ENSMUSG00000094724.8	Rnaset2b	ENSMUSG00000094724.8	ENSMUST00000232029.1	protein_coding	chr17:6990656-6998190
chr17	7042564	7042816	+	Lx5c	LINE	L1	chr17	7042564	7042566	-	ENSMUST00000158815.1,ENSMUSG00000094889.1	Gm25119	ENSMUSG00000094889.1	ENSMUST00000158815.1	scaRNA	chr17:7042478-7042565
chr17	7704771	7705154	+	MTA_Mm	LTR	ERVL-MaLR	chr17	7704839	7704841	+	ENSMUST00000177784.1,ENSMUSG00000094603.1	Gm25872	ENSMUSG00000094603.1	ENSMUST00000177784.1	miRNA	chr17:7704840-7704939
chr17	8083822	8084075	-	Lx5c	LINE	L1	chr17	8084074	8084076	+	ENSMUST00000158590.1,ENSMUSG00000094965.1	Gm22416	ENSMUSG00000094965.1	ENSMUST00000158590.1	scaRNA	chr17:8084075-8084162
chr17	8282879	8282959	-	ID_B1	SINE	B4	chr17	8282903	8282905	+	ENSMUST00000145402.7,ENSMUSG00000023861.17	Mpc1	ENSMUSG00000023861.17	ENSMUST00000145402.7	protein_coding	chr17:8282904-8296885
chr17	8295915	8296117	+	B2_Mm2	SINE	B2	chr17	8296107	8296109	+	ENSMUST00000137344.1,ENSMUSG00000023861.17	Mpc1	ENSMUSG00000023861.17	ENSMUST00000137344.1	protein_coding	chr17:8296108-8297150
chr17	8318626	8318771	+	B1_Mur3	SINE	Alu	chr17	8318728	8318730	+	ENSMUST00000153406.7,ENSMUSG00000073468.12	Sft2d1	ENSMUSG00000073468.12	ENSMUST00000153406.7	protein_coding	chr17:8318729-8324463
chr17	8337147	8337639	+	MT2_Mm	LTR	ERVL	chr17	8337458	8337460	+	ENSMUST00000232566.1,ENSMUSG00000055945.8	Prr18	ENSMUSG00000055945.8	ENSMUST00000232566.1	protein_coding	chr17:8337459-8341364
chr17	8525320	8525406	+	(CA)n	Simple_repeat	Simple_repeat	chr17	8525371	8525373	+	ENSMUST00000115715.7,ENSMUSG00000023868.17	Pde10a	ENSMUSG00000023868.17	ENSMUST00000115715.7	protein_coding	chr17:8525372-8981671
chr17	8568851	8568934	-	Lx7	LINE	L1	chr17	8568859	8568861	-	ENSMUST00000119013.1,ENSMUSG00000084390.1	Gm15425	ENSMUSG00000084390.1	ENSMUST00000119013.1	processed_pseudogene	chr17:8564258-8568860
chr17	8801679	8801735	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	8801692	8801694	+	ENSMUST00000141877.1,ENSMUSG00000023868.17	Pde10a	ENSMUSG00000023868.17	ENSMUST00000141877.1	protein_coding	chr17:8801693-8899189
chr17	8801679	8801735	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	8801692	8801694	+	ENSMUST00000089085.9,ENSMUSG00000023868.17	Pde10a	ENSMUSG00000023868.17	ENSMUST00000089085.9	protein_coding	chr17:8801693-8986648
chr17	8923817	8924196	-	MTE2b	LTR	ERVL-MaLR	chr17	8924142	8924144	+	ENSMUST00000149440.7,ENSMUSG00000023868.17	Pde10a	ENSMUSG00000023868.17	ENSMUST00000149440.7	protein_coding	chr17:8924143-8984288
chr17	9188831	9189234	+	RLTR10A	LTR	ERVK	chr17	9189125	9189127	+	ENSMUST00000233443.1,ENSMUSG00000117026.1	AC105297.2	ENSMUSG00000117026.1	ENSMUST00000233443.1	lincRNA	chr17:9189126-9223664
chr17	9188831	9189234	+	RLTR10A	LTR	ERVK	chr17	9189146	9189148	+	ENSMUST00000233515.1,ENSMUSG00000117026.1	AC105297.2	ENSMUSG00000117026.1	ENSMUST00000233515.1	lincRNA	chr17:9189147-9223648
chr17	9245932	9246658	-	RMER1C	Other	Other	chr17	9246549	9246551	+	ENSMUST00000233025.1,ENSMUSG00000117133.1	AC105297.3	ENSMUSG00000117133.1	ENSMUST00000233025.1	TEC	chr17:9246550-9248548
chr17	9549488	9549715	+	MTA_Mm	LTR	ERVL-MaLR	chr17	9549690	9549692	+	ENSMUST00000232756.1,ENSMUSG00000117143.1	AC118543.1	ENSMUSG00000117143.1	ENSMUST00000232756.1	lincRNA	chr17:9549691-9594242
chr17	10319372	10319504	+	GC_rich	Low_complexity	Low_complexity	chr17	10319379	10319381	-	ENSMUST00000233645.1,ENSMUSG00000062078.15	Qk	ENSMUSG00000062078.15	ENSMUST00000233645.1	protein_coding	chr17:10202601-10319380
chr17	10319372	10319504	+	GC_rich	Low_complexity	Low_complexity	chr17	10319379	10319381	-	ENSMUST00000042296.8,ENSMUSG00000062078.15	Qk	ENSMUSG00000062078.15	ENSMUST00000042296.8	protein_coding	chr17:10210179-10319380
chr17	11545780	11546373	-	Lx8	LINE	L1	chr17	11545797	11545799	-	ENSMUST00000185957.1,ENSMUSG00000099618.1	Gm28118	ENSMUSG00000099618.1	ENSMUST00000185957.1	processed_pseudogene	chr17:11545505-11545798
chr17	12133005	12133375	+	ORR1B1	LTR	ERVL-MaLR	chr17	12133204	12133206	+	ENSMUST00000167792.1,ENSMUSG00000023827.8	Agpat4	ENSMUSG00000023827.8	ENSMUST00000167792.1	protein_coding	chr17:12133205-12210361
chr17	12308540	12308873	-	ORR1E	LTR	ERVL-MaLR	chr17	12308583	12308585	-	ENSMUST00000233012.1,ENSMUSG00000014426.9	Map3k4	ENSMUSG00000014426.9	ENSMUST00000233012.1	protein_coding	chr17:12272192-12308584
chr17	12320513	12320882	+	MER34A	LTR	ERV1	chr17	12320727	12320729	-	ENSMUST00000233693.1,ENSMUSG00000117337.1	AC136921.2	ENSMUSG00000117337.1	ENSMUST00000233693.1	lincRNA	chr17:12319015-12320728
chr17	12466629	12467065	+	MT2B1	LTR	ERVL	chr17	12466843	12466845	+	ENSMUST00000233194.1,ENSMUSG00000117314.1	AC132106.1	ENSMUSG00000117314.1	ENSMUST00000233194.1	antisense	chr17:12466844-12479578
chr17	12466629	12467065	+	MT2B1	LTR	ERVL	chr17	12466919	12466921	+	ENSMUST00000233410.1,ENSMUSG00000117314.1	AC132106.1	ENSMUSG00000117314.1	ENSMUST00000233410.1	antisense	chr17:12466920-12479116
chr17	12466629	12467065	+	MT2B1	LTR	ERVL	chr17	12466943	12466945	+	ENSMUST00000233360.1,ENSMUSG00000117314.1	AC132106.1	ENSMUSG00000117314.1	ENSMUST00000233360.1	antisense	chr17:12466944-12479053
chr17	12770446	12770643	+	B4A	SINE	B4	chr17	12770630	12770632	+	ENSMUST00000158900.1,ENSMUSG00000089525.1	Gm23833	ENSMUSG00000089525.1	ENSMUST00000158900.1	misc_RNA	chr17:12770631-12770882
chr17	12815604	12816400	+	RMER13A	LTR	ERVK	chr17	12815930	12815932	+	ENSMUST00000161890.1,ENSMUSG00000078247.4	Airn	ENSMUSG00000078247.4	ENSMUST00000161890.1	antisense	chr17:12815931-12830335
chr17	12854403	12854716	-	MTE2b	LTR	ERVL-MaLR	chr17	12854459	12854461	-	ENSMUST00000162333.7,ENSMUSG00000068037.11	Mas1	ENSMUSG00000068037.11	ENSMUST00000162333.7	protein_coding	chr17:12841115-12854460
chr17	12854403	12854716	-	MTE2b	LTR	ERVL-MaLR	chr17	12854459	12854461	-	ENSMUST00000161747.7,ENSMUSG00000068037.11	Mas1	ENSMUSG00000068037.11	ENSMUST00000161747.7	protein_coding	chr17:12841115-12854460
chr17	12854403	12854716	-	MTE2b	LTR	ERVL-MaLR	chr17	12854459	12854461	-	ENSMUST00000233607.1,ENSMUSG00000068037.11	Mas1	ENSMUSG00000068037.11	ENSMUST00000233607.1	protein_coding	chr17:12841115-12854460
chr17	12897462	12898015	+	RLTR31B_Mm	LTR	ERVK	chr17	12897536	12897538	+	ENSMUST00000233153.1,ENSMUSG00000117072.1	AL589878.1	ENSMUSG00000117072.1	ENSMUST00000233153.1	antisense	chr17:12897537-12899705
chr17	12910105	12910252	+	B1_Mm	SINE	Alu	chr17	12910229	12910231	-	ENSMUST00000163394.2,ENSMUSG00000073460.5	Pnldc1	ENSMUSG00000073460.5	ENSMUST00000163394.2	protein_coding	chr17:12888729-12910230
chr17	12940392	12940436	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	12940401	12940403	-	ENSMUST00000043923.11,ENSMUSG00000062480.12	Acat3	ENSMUSG00000062480.12	ENSMUST00000043923.11	protein_coding	chr17:12923833-12940402
chr17	12983889	12984023	+	B1_Mur3	SINE	Alu	chr17	12983971	12983973	-	ENSMUST00000161901.1,ENSMUSG00000060475.13	Wtap	ENSMUSG00000060475.13	ENSMUST00000161901.1	protein_coding	chr17:12981751-12983972
chr17	12992224	12992284	+	GC_rich	Low_complexity	Low_complexity	chr17	12992258	12992260	-	ENSMUST00000007007.13,ENSMUSG00000060475.13	Wtap	ENSMUSG00000060475.13	ENSMUST00000007007.13	protein_coding	chr17:12966799-12992259
chr17	12993984	12994413	-	MT2C_Mm	LTR	ERVL	chr17	12994168	12994170	-	ENSMUST00000233867.1,ENSMUSG00000060475.13	Wtap	ENSMUSG00000060475.13	ENSMUST00000233867.1	protein_coding	chr17:12975417-12994169
chr17	12993984	12994413	-	MT2C_Mm	LTR	ERVL	chr17	12994164	12994166	-	ENSMUST00000233467.1,ENSMUSG00000060475.13	Wtap	ENSMUSG00000060475.13	ENSMUST00000233467.1	protein_coding	chr17:12992623-12994165
chr17	13006705	13007049	+	ORR1A0	LTR	ERVL-MaLR	chr17	13006845	13006847	+	ENSMUST00000233451.1,ENSMUSG00000006818.5	Sod2	ENSMUSG00000006818.5	ENSMUST00000233451.1	protein_coding	chr17:13006846-13008310
chr17	13195715	13196107	+	BGLII	LTR	ERVK	chr17	13195877	13195879	+	ENSMUST00000233603.1,ENSMUSG00000117282.1	AC166360.3	ENSMUSG00000117282.1	ENSMUST00000233603.1	lincRNA	chr17:13195878-13204405
chr17	13195715	13196107	+	BGLII	LTR	ERVK	chr17	13195949	13195951	+	ENSMUST00000233574.1,ENSMUSG00000117282.1	AC166360.3	ENSMUSG00000117282.1	ENSMUST00000233574.1	lincRNA	chr17:13195950-13204448
chr17	13204943	13205132	+	MTE2a	LTR	ERVL-MaLR	chr17	13205041	13205043	+	ENSMUST00000233049.1,ENSMUSG00000117051.1	AC166360.1	ENSMUSG00000117051.1	ENSMUST00000233049.1	TEC	chr17:13205042-13206209
chr17	13221029	13221204	+	(TG)n	Simple_repeat	Simple_repeat	chr17	13221187	13221189	+	ENSMUST00000080647.4,ENSMUSG00000073458.1	Smok2a	ENSMUSG00000073458.1	ENSMUST00000080647.4	protein_coding	chr17:13221188-13227658
chr17	13230210	13230306	+	(AGTTG)n	Simple_repeat	Simple_repeat	chr17	13230256	13230258	+	ENSMUST00000162940.2,ENSMUSG00000073457.4	Smok2b	ENSMUSG00000073457.4	ENSMUST00000162940.2	protein_coding	chr17:13230257-13237184
chr17	13249894	13250000	-	U6	snRNA	snRNA	chr17	13249999	13250001	-	ENSMUST00000101867.2,ENSMUSG00000093998.1	Gm26500	ENSMUSG00000093998.1	ENSMUST00000101867.2	snRNA	chr17:13249895-13250000
chr17	13432032	13432139	-	U6	snRNA	snRNA	chr17	13432138	13432140	-	ENSMUST00000178023.1,ENSMUSG00000095132.1	Rnu6	ENSMUSG00000095132.1	ENSMUST00000178023.1	snRNA	chr17:13432033-13432139
chr17	13500248	13500648	-	RLTR10A	LTR	ERVK	chr17	13500335	13500337	-	ENSMUST00000138345.7,ENSMUSG00000117042.1	AC173344.1	ENSMUSG00000117042.1	ENSMUST00000138345.7	lincRNA	chr17:13482553-13500336
chr17	13500791	13501183	+	BGLII	LTR	ERVK	chr17	13500953	13500955	+	ENSMUST00000160626.3,ENSMUSG00000090211.3	Gm16050	ENSMUSG00000090211.3	ENSMUST00000160626.3	lincRNA	chr17:13500954-13511193
chr17	13534063	13534169	-	U6	snRNA	snRNA	chr17	13534168	13534170	-	ENSMUST00000101829.2,ENSMUSG00000095184.1	Gm26375	ENSMUSG00000095184.1	ENSMUST00000101829.2	snRNA	chr17:13534064-13534169
chr17	13675376	13675477	+	U6	snRNA	snRNA	chr17	13675375	13675377	+	ENSMUST00000104161.1,ENSMUSG00000077349.1	Gm24867	ENSMUSG00000077349.1	ENSMUST00000104161.1	snRNA	chr17:13675376-13675482
chr17	13760401	13760616	+	(CG)n	Simple_repeat	Simple_repeat	chr17	13760538	13760540	+	ENSMUST00000139347.7,ENSMUSG00000068036.15	Afdn	ENSMUSG00000068036.15	ENSMUST00000139347.7	protein_coding	chr17:13760539-13810518
chr17	13760401	13760616	+	(CG)n	Simple_repeat	Simple_repeat	chr17	13760540	13760542	+	ENSMUST00000156591.7,ENSMUSG00000068036.15	Afdn	ENSMUSG00000068036.15	ENSMUST00000156591.7	protein_coding	chr17:13760541-13810493
chr17	13760401	13760616	+	(CG)n	Simple_repeat	Simple_repeat	chr17	13760540	13760542	+	ENSMUST00000170827.8,ENSMUSG00000068036.15	Afdn	ENSMUSG00000068036.15	ENSMUST00000170827.8	protein_coding	chr17:13760541-13905794
chr17	13760401	13760616	+	(CG)n	Simple_repeat	Simple_repeat	chr17	13760547	13760549	+	ENSMUST00000139666.7,ENSMUSG00000068036.15	Afdn	ENSMUSG00000068036.15	ENSMUST00000139666.7	protein_coding	chr17:13760548-13906150
chr17	13760401	13760616	+	(CG)n	Simple_repeat	Simple_repeat	chr17	13760598	13760600	+	ENSMUST00000137708.7,ENSMUSG00000068036.15	Afdn	ENSMUSG00000068036.15	ENSMUST00000137708.7	protein_coding	chr17:13760599-13896323
chr17	13760401	13760616	+	(CG)n	Simple_repeat	Simple_repeat	chr17	13760598	13760600	+	ENSMUST00000137784.7,ENSMUSG00000068036.15	Afdn	ENSMUSG00000068036.15	ENSMUST00000137784.7	protein_coding	chr17:13760599-13904132
chr17	14791789	14792871	-	MLTR25A	LTR	ERVK	chr17	14792003	14792005	-	ENSMUST00000158428.1,ENSMUSG00000089053.1	Gm23352	ENSMUSG00000089053.1	ENSMUST00000158428.1	snRNA	chr17:14791941-14792004
chr17	14909475	14909920	+	MT2A	LTR	ERVL	chr17	14909518	14909520	-	ENSMUST00000228233.1,ENSMUSG00000046991.11	Wdr27	ENSMUSG00000046991.11	ENSMUST00000228233.1	protein_coding	chr17:14829331-14909519
chr17	14961210	14961484	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	14961272	14961274	-	ENSMUST00000024657.11,ENSMUSG00000023883.13	Phf10	ENSMUSG00000023883.13	ENSMUST00000024657.11	protein_coding	chr17:14945009-14961273
chr17	14961210	14961484	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	14961272	14961274	-	ENSMUST00000168938.2,ENSMUSG00000023883.13	Phf10	ENSMUSG00000023883.13	ENSMUST00000168938.2	protein_coding	chr17:14947738-14961273
chr17	15152018	15152272	+	MLT1A0	LTR	ERVL-MaLR	chr17	15152158	15152160	+	ENSMUST00000231330.1,ENSMUSG00000116655.1	AC154507.2	ENSMUSG00000116655.1	ENSMUST00000231330.1	lincRNA	chr17:15152159-15173058
chr17	15240736	15241184	+	RLTR44C	LTR	ERVK	chr17	15240782	15240784	-	ENSMUST00000181658.1,ENSMUSG00000097624.2	Gm5091	ENSMUSG00000097624.2	ENSMUST00000181658.1	lincRNA	chr17:15231585-15240783
chr17	15374983	15375021	+	GC_rich	Low_complexity	Low_complexity	chr17	15374999	15375001	+	ENSMUST00000181251.1,ENSMUSG00000097566.1	A930024N18Rik	ENSMUSG00000097566.1	ENSMUST00000181251.1	lincRNA	chr17:15375000-15379475
chr17	15478523	15478708	-	B3A	SINE	B2	chr17	15478588	15478590	-	ENSMUST00000231696.1,ENSMUSG00000014769.10	Psmb1	ENSMUSG00000014769.10	ENSMUST00000231696.1	protein_coding	chr17:15475719-15478589
chr17	15555747	15555951	+	B3	SINE	B2	chr17	15555870	15555872	-	ENSMUST00000128267.7,ENSMUSG00000051977.16	Prdm9	ENSMUSG00000051977.16	ENSMUST00000128267.7	protein_coding	chr17:15545119-15555871
chr17	15631395	15632053	+	RLTR42-int	LTR	ERVK	chr17	15631762	15631764	+	ENSMUST00000231675.1,ENSMUSG00000116924.1	CT033750.2	ENSMUSG00000116924.1	ENSMUST00000231675.1	lincRNA	chr17:15631763-15634681
chr17	15631395	15632053	+	RLTR42-int	LTR	ERVK	chr17	15631787	15631789	+	ENSMUST00000231822.1,ENSMUSG00000116924.1	CT033750.2	ENSMUSG00000116924.1	ENSMUST00000231822.1	lincRNA	chr17:15631788-15641104
chr17	15704950	15705097	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	15704966	15704968	+	ENSMUST00000024627.13,ENSMUSG00000023852.14	Chd1	ENSMUSG00000023852.14	ENSMUST00000024627.13	protein_coding	chr17:15704967-15772610
chr17	15704950	15705097	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	15704973	15704975	+	ENSMUST00000173311.7,ENSMUSG00000023852.14	Chd1	ENSMUSG00000023852.14	ENSMUST00000173311.7	protein_coding	chr17:15704974-15752992
chr17	15704950	15705097	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	15705017	15705019	+	ENSMUST00000173159.1,ENSMUSG00000023852.14	Chd1	ENSMUSG00000023852.14	ENSMUST00000173159.1	protein_coding	chr17:15705018-15731908
chr17	15837548	15837655	-	U6	snRNA	snRNA	chr17	15837654	15837656	-	ENSMUST00000179031.1,ENSMUSG00000096849.1	Gm25598	ENSMUSG00000096849.1	ENSMUST00000179031.1	snRNA	chr17:15837549-15837655
chr17	16670180	16670305	-	ORR1A1	LTR	ERVL-MaLR	chr17	16670185	16670187	-	ENSMUST00000231447.1,ENSMUSG00000116864.1	AC154306.1	ENSMUSG00000116864.1	ENSMUST00000231447.1	processed_pseudogene	chr17:16669156-16670186
chr17	16972581	16973802	+	MurSatRep1	Unknown	Unknown	chr17	16972909	16972911	+	ENSMUST00000071374.5,ENSMUSG00000060149.7	BC002059	ENSMUSG00000060149.7	ENSMUST00000071374.5	lincRNA	chr17:16972910-16973770
chr17	17262007	17263444	+	MurSatRep1	Unknown	Unknown	chr17	17262349	17262351	+	ENSMUST00000231376.1,ENSMUSG00000116802.1	AC129328.1	ENSMUSG00000116802.1	ENSMUST00000231376.1	lincRNA	chr17:17262350-17264870
chr17	17315602	17317059	+	MurSatRep1	Unknown	Unknown	chr17	17316077	17316079	+	ENSMUST00000105311.3,ENSMUSG00000072761.10	Gm6712	ENSMUSG00000072761.10	ENSMUST00000105311.3	lincRNA	chr17:17316078-17319511
chr17	17411870	17412027	-	B1_Mur4	SINE	Alu	chr17	17411992	17411994	-	ENSMUST00000181390.2,ENSMUSG00000097379.2	Gm26873	ENSMUSG00000097379.2	ENSMUST00000181390.2	antisense	chr17:17389943-17411993
chr17	17594703	17595302	-	L1Md_F2	LINE	L1	chr17	17594775	17594777	-	ENSMUST00000232626.1,ENSMUSG00000116796.1	AC121795.2	ENSMUSG00000116796.1	ENSMUST00000232626.1	TEC	chr17:17593683-17594776
chr17	17782511	17783143	+	L1_Mur3	LINE	L1	chr17	17783131	17783133	+	ENSMUST00000122656.1,ENSMUSG00000084605.1	Gm23837	ENSMUSG00000084605.1	ENSMUST00000122656.1	misc_RNA	chr17:17783132-17783417
chr17	17832950	17832971	+	(T)n	Simple_repeat	Simple_repeat	chr17	17832951	17832953	+	ENSMUST00000178056.1,ENSMUSG00000080316.11	Spaca6	ENSMUSG00000080316.11	ENSMUST00000178056.1	protein_coding	chr17:17832952-17837025
chr17	19257848	19258487	+	RLTR17	LTR	ERVK	chr17	19257929	19257931	+	ENSMUST00000232641.1,ENSMUSG00000116587.1	CT573043.1	ENSMUSG00000116587.1	ENSMUST00000232641.1	lincRNA	chr17:19257930-19277565
chr17	19414452	19416167	+	Lx3_Mus	LINE	L1	chr17	19415430	19415432	+	ENSMUST00000231951.1,ENSMUSG00000116984.1	CT030713.2	ENSMUSG00000116984.1	ENSMUST00000231951.1	lincRNA	chr17:19415431-19490072
chr17	21395114	21395589	-	Lx5	LINE	L1	chr17	21395116	21395118	-	ENSMUST00000232365.1,ENSMUSG00000116633.1	CT009594.1	ENSMUSG00000116633.1	ENSMUST00000232365.1	processed_pseudogene	chr17:21394078-21395117
chr17	21613485	21613636	-	RLTR9A	LTR	ERVK	chr17	21613611	21613613	+	ENSMUST00000232712.1,ENSMUSG00000117209.1	CAAA01162718.1	ENSMUSG00000117209.1	ENSMUST00000232712.1	processed_pseudogene	chr17:21613612-21613822
chr17	21615243	21615643	+	LTRIS6	LTR	ERV1	chr17	21615499	21615501	+	ENSMUST00000232793.1,ENSMUSG00000117013.1	CAAA01141682.1	ENSMUSG00000117013.1	ENSMUST00000232793.1	transcribed_processed_pseudogene	chr17:21615500-21656484
chr17	21615243	21615643	+	LTRIS6	LTR	ERV1	chr17	21615500	21615502	+	ENSMUST00000233749.1,ENSMUSG00000117013.1	CAAA01141682.1	ENSMUSG00000117013.1	ENSMUST00000233749.1	transcribed_processed_pseudogene	chr17:21615501-21633173
chr17	21690989	21692225	+	MMSAT4	Satellite	Satellite	chr17	21691859	21691861	+	ENSMUST00000072133.4,ENSMUSG00000067929.3	Gm10226	ENSMUSG00000067929.3	ENSMUST00000072133.4	protein_coding	chr17:21691860-21692114
chr17	21730444	21730828	-	IAPEY_LTR	LTR	ERVK	chr17	21730794	21730796	+	ENSMUST00000182827.7,ENSMUSG00000061544.13	Zfp229	ENSMUSG00000061544.13	ENSMUST00000182827.7	protein_coding	chr17:21730795-21745061
chr17	21735843	21735991	+	B1_Mus2	SINE	Alu	chr17	21735911	21735913	+	ENSMUST00000182603.1,ENSMUSG00000061544.13	Zfp229	ENSMUSG00000061544.13	ENSMUST00000182603.1	protein_coding	chr17:21735912-21748969
chr17	21801408	21808185	+	IAPLTR3-int	LTR	ERVK	chr17	21801657	21801659	-	ENSMUST00000057521.5,ENSMUSG00000049202.5	4930515G13Rik	ENSMUSG00000049202.5	ENSMUST00000057521.5	pseudogene	chr17:21801159-21801658
chr17	22486546	22486628	-	MamGypLTR3a	LTR	Gypsy	chr17	22486554	22486556	+	ENSMUST00000233970.1,ENSMUSG00000117094.1	AC122270.2	ENSMUSG00000117094.1	ENSMUST00000233970.1	processed_pseudogene	chr17:22486555-22486750
chr17	22494615	22494686	+	RLTR13C1	LTR	ERVK	chr17	22494621	22494623	+	ENSMUST00000232727.1,ENSMUSG00000117259.1	AC122270.3	ENSMUSG00000117259.1	ENSMUST00000232727.1	processed_pseudogene	chr17:22494622-22495562
chr17	23178537	23178736	+	B3	SINE	B2	chr17	23178538	23178540	-	ENSMUST00000140313.7,ENSMUSG00000002617.14	Zfp40	ENSMUSG00000002617.14	ENSMUST00000140313.7	protein_coding	chr17:23174876-23178539
chr17	23415497	23415561	-	MER130	Unknown	Unknown	chr17	23415540	23415542	+	ENSMUST00000233682.1,ENSMUSG00000117159.1	CT485617.1	ENSMUSG00000117159.1	ENSMUST00000233682.1	processed_pseudogene	chr17:23415541-23415778
chr17	23492334	23494723	+	Lx3A	LINE	L1	chr17	23492470	23492472	-	ENSMUST00000208736.1,ENSMUSG00000109027.1	Olfr752-ps1	ENSMUSG00000109027.1	ENSMUST00000208736.1	unprocessed_pseudogene	chr17:23491331-23492471
chr17	23599304	23599491	-	L2b	LINE	L2	chr17	23599486	23599488	-	ENSMUST00000057029.4,ENSMUSG00000062012.14	Zfp13	ENSMUSG00000062012.14	ENSMUST00000057029.4	protein_coding	chr17:23575852-23599487
chr17	23822842	23823594	+	L2c	LINE	L2	chr17	23823524	23823526	+	ENSMUST00000190568.1,ENSMUSG00000039218.17	Srrm2	ENSMUSG00000039218.17	ENSMUST00000190568.1	protein_coding	chr17:23823525-23824327
chr17	23822842	23823594	+	L2c	LINE	L2	chr17	23823290	23823292	+	ENSMUST00000175240.1,ENSMUSG00000092981.1	Mir5125	ENSMUSG00000092981.1	ENSMUST00000175240.1	miRNA	chr17:23823291-23823369
chr17	23829036	23829193	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	23829135	23829137	-	ENSMUST00000069579.6,ENSMUSG00000055839.6	Elob	ENSMUSG00000055839.6	ENSMUST00000069579.6	protein_coding	chr17:23824738-23829136
chr17	23829036	23829193	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	23829097	23829099	-	ENSMUST00000233593.1,ENSMUSG00000055839.6	Elob	ENSMUSG00000055839.6	ENSMUST00000233593.1	protein_coding	chr17:23824740-23829098
chr17	23829036	23829193	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	23829082	23829084	-	ENSMUST00000232702.1,ENSMUSG00000055839.6	Elob	ENSMUSG00000055839.6	ENSMUST00000232702.1	protein_coding	chr17:23824745-23829083
chr17	23829036	23829193	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	23829113	23829115	-	ENSMUST00000233519.1,ENSMUSG00000055839.6	Elob	ENSMUSG00000055839.6	ENSMUST00000233519.1	protein_coding	chr17:23824809-23829114
chr17	23871158	23871280	-	RSINE1	SINE	B4	chr17	23871243	23871245	+	ENSMUST00000235013.1,ENSMUSG00000024116.6	Prss21	ENSMUSG00000024116.6	ENSMUST00000235013.1	protein_coding	chr17:23871244-23873113
chr17	23925478	23925952	-	RMER17C-int	LTR	ERVK	chr17	23925496	23925498	-	ENSMUST00000234950.1,ENSMUSG00000117488.1	AC110262.3	ENSMUSG00000117488.1	ENSMUST00000234950.1	lincRNA	chr17:23902566-23925497
chr17	23941502	23941864	-	RLTR40	LTR	ERVK	chr17	23941671	23941673	+	ENSMUST00000181985.7,ENSMUSG00000024128.13	Sbp	ENSMUSG00000024128.13	ENSMUST00000181985.7	protein_coding	chr17:23941672-23945603
chr17	23941502	23941864	-	RLTR40	LTR	ERVK	chr17	23941832	23941834	+	ENSMUST00000183252.7,ENSMUSG00000024128.13	Sbp	ENSMUSG00000024128.13	ENSMUST00000183252.7	protein_coding	chr17:23941833-23945607
chr17	23974282	23974830	+	Lx8	LINE	L1	chr17	23974800	23974802	-	ENSMUST00000135549.7,ENSMUSG00000024124.10	Prss30	ENSMUSG00000024124.10	ENSMUST00000135549.7	protein_coding	chr17:23972839-23974801
chr17	23974282	23974830	+	Lx8	LINE	L1	chr17	23974677	23974679	-	ENSMUST00000151448.7,ENSMUSG00000024124.10	Prss30	ENSMUSG00000024124.10	ENSMUST00000151448.7	protein_coding	chr17:23973090-23974678
chr17	24009932	24010120	-	B3	SINE	B2	chr17	24010031	24010033	+	ENSMUST00000185003.1,ENSMUSG00000098964.1	Gm27700	ENSMUSG00000098964.1	ENSMUST00000185003.1	miRNA	chr17:24010032-24010112
chr17	24023328	24023427	-	MTC	LTR	ERVL-MaLR	chr17	24023327	24023329	-	ENSMUST00000103996.1,ENSMUSG00000077184.1	Gm25092	ENSMUSG00000077184.1	ENSMUST00000103996.1	snoRNA	chr17:24023200-24023328
chr17	24120718	24120849	+	B1_Mus2	SINE	Alu	chr17	24120793	24120795	-	ENSMUST00000154982.1,ENSMUSG00000024122.16	Pdpk1	ENSMUSG00000024122.16	ENSMUST00000154982.1	protein_coding	chr17:24106887-24120794
chr17	24141567	24141616	+	GC_rich	Low_complexity	Low_complexity	chr17	24141594	24141596	-	ENSMUST00000102927.9,ENSMUSG00000024122.16	Pdpk1	ENSMUSG00000024122.16	ENSMUST00000102927.9	protein_coding	chr17:24073680-24141595
chr17	24141567	24141616	+	GC_rich	Low_complexity	Low_complexity	chr17	24141569	24141571	-	ENSMUST00000115409.8,ENSMUSG00000024122.16	Pdpk1	ENSMUSG00000024122.16	ENSMUST00000115409.8	protein_coding	chr17:24075812-24141570
chr17	24141567	24141616	+	GC_rich	Low_complexity	Low_complexity	chr17	24141575	24141577	-	ENSMUST00000115407.8,ENSMUSG00000024122.16	Pdpk1	ENSMUSG00000024122.16	ENSMUST00000115407.8	protein_coding	chr17:24078881-24141576
chr17	24249554	24249671	+	B1_Mus2	SINE	Alu	chr17	24249571	24249573	-	ENSMUST00000234708.1,ENSMUSG00000072082.7	Ccnf	ENSMUSG00000072082.7	ENSMUST00000234708.1	protein_coding	chr17:24240804-24249572
chr17	24304415	24304902	+	MT2_Mm	LTR	ERVL	chr17	24304668	24304670	+	ENSMUST00000116896.1,ENSMUSG00000094175.1	Gm24427	ENSMUSG00000094175.1	ENSMUST00000116896.1	miRNA	chr17:24304669-24304789
chr17	24362437	24362544	-	U6	snRNA	snRNA	chr17	24362543	24362545	-	ENSMUST00000179484.1,ENSMUSG00000095396.1	Gm25618	ENSMUSG00000095396.1	ENSMUST00000179484.1	snRNA	chr17:24362438-24362544
chr17	24421487	24421617	-	PB1D7	SINE	Alu	chr17	24421579	24421581	+	ENSMUST00000234233.1,ENSMUSG00000034681.17	Rnps1	ENSMUSG00000034681.17	ENSMUST00000234233.1	protein_coding	chr17:24421580-24422425
chr17	24421526	24421668	-	ID_B1	SINE	B4	chr17	24421579	24421581	+	ENSMUST00000234233.1,ENSMUSG00000034681.17	Rnps1	ENSMUSG00000034681.17	ENSMUST00000234233.1	protein_coding	chr17:24421580-24422425
chr17	24470409	24470555	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	24470434	24470436	+	ENSMUST00000234216.1,ENSMUSG00000043445.7	Pgp	ENSMUSG00000043445.7	ENSMUST00000234216.1	protein_coding	chr17:24470435-24472862
chr17	24488568	24488624	+	GC_rich	Low_complexity	Low_complexity	chr17	24488600	24488602	+	ENSMUST00000234171.1,ENSMUSG00000033597.9	Caskin1	ENSMUSG00000033597.9	ENSMUST00000234171.1	protein_coding	chr17:24488601-24500277
chr17	24527481	24527542	+	L2a	LINE	L2	chr17	24527488	24527490	-	ENSMUST00000177154.7,ENSMUSG00000052752.15	Traf7	ENSMUSG00000052752.15	ENSMUST00000177154.7	protein_coding	chr17:24513059-24527489
chr17	24638099	24638236	+	B1_Mus1	SINE	Alu	chr17	24638175	24638177	+	ENSMUST00000234888.1,ENSMUSG00000041429.3	Nthl1	ENSMUSG00000041429.3	ENSMUST00000234888.1	protein_coding	chr17:24638176-24638836
chr17	24650288	24650393	+	C-rich	Low_complexity	Low_complexity	chr17	24650288	24650290	-	ENSMUST00000234557.1,ENSMUSG00000002504.15	Slc9a3r2	ENSMUSG00000002504.15	ENSMUST00000234557.1	protein_coding	chr17:24639286-24650289
chr17	24650288	24650393	+	C-rich	Low_complexity	Low_complexity	chr17	24650326	24650328	-	ENSMUST00000002572.5,ENSMUSG00000002504.15	Slc9a3r2	ENSMUSG00000002504.15	ENSMUST00000002572.5	protein_coding	chr17:24639286-24650327
chr17	24689954	24689975	+	GC_rich	Low_complexity	Low_complexity	chr17	24689954	24689956	-	ENSMUST00000007236.4,ENSMUSG00000007021.5	Syngr3	ENSMUSG00000007021.5	ENSMUST00000007236.4	protein_coding	chr17:24685092-24689955
chr17	24696145	24696312	+	G-rich	Low_complexity	Low_complexity	chr17	24696155	24696157	-	ENSMUST00000046839.9,ENSMUSG00000040888.10	Gfer	ENSMUSG00000040888.10	ENSMUST00000046839.9	protein_coding	chr17:24693190-24696156
chr17	24696145	24696312	+	G-rich	Low_complexity	Low_complexity	chr17	24696233	24696235	+	ENSMUST00000019464.7,ENSMUSG00000019320.14	Noxo1	ENSMUSG00000019320.14	ENSMUST00000019464.7	protein_coding	chr17:24696234-24700529
chr17	24721377	24721511	-	B1_Mus2	SINE	Alu	chr17	24721448	24721450	+	ENSMUST00000132803.1,ENSMUSG00000044533.15	Rps2	ENSMUSG00000044533.15	ENSMUST00000132803.1	protein_coding	chr17:24721449-24721925
chr17	24722869	24723008	+	B1_Mus2	SINE	Alu	chr17	24722905	24722907	-	ENSMUST00000144285.1,ENSMUSG00000040048.14	Ndufb10	ENSMUSG00000040048.14	ENSMUST00000144285.1	protein_coding	chr17:24722060-24722906
chr17	25031462	25031924	-	RMER4A	LTR	ERVK	chr17	25031834	25031836	+	ENSMUST00000232788.1,ENSMUSG00000024169.16	Ift140	ENSMUSG00000024169.16	ENSMUST00000232788.1	protein_coding	chr17:25031835-25034282
chr17	25113562	25113692	+	B1F2	SINE	Alu	chr17	25113640	25113642	-	ENSMUST00000151205.1,ENSMUSG00000024170.15	Telo2	ENSMUSG00000024170.15	ENSMUST00000151205.1	protein_coding	chr17:25111127-25113641
chr17	25158601	25158745	-	RMER17B2	LTR	ERVK	chr17	25158654	25158656	+	ENSMUST00000159426.1,ENSMUSG00000036636.10	Clcn7	ENSMUSG00000036636.10	ENSMUST00000159426.1	protein_coding	chr17:25158655-25159742
chr17	25265828	25265926	+	PB1D11	SINE	Alu	chr17	25265868	25265870	-	ENSMUST00000174216.7,ENSMUSG00000015120.15	Ube2i	ENSMUSG00000015120.15	ENSMUST00000174216.7	protein_coding	chr17:25262179-25265869
chr17	25378900	25379080	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	25378942	25378944	-	ENSMUST00000159331.1,ENSMUSG00000024112.16	Cacna1h	ENSMUSG00000024112.16	ENSMUST00000159331.1	protein_coding	chr17:25377551-25378943
chr17	25694113	25694220	-	U6	snRNA	snRNA	chr17	25694219	25694221	-	ENSMUST00000180010.1,ENSMUSG00000096451.1	Gm22645	ENSMUSG00000096451.1	ENSMUST00000180010.1	snRNA	chr17:25694114-25694220
chr17	25776737	25776886	+	B1_Mus1	SINE	Alu	chr17	25776818	25776820	+	ENSMUST00000130861.1,ENSMUSG00000002280.10	Narfl	ENSMUSG00000002280.10	ENSMUST00000130861.1	protein_coding	chr17:25776819-25779593
chr17	25797026	25797056	+	GC_rich	Low_complexity	Low_complexity	chr17	25797044	25797046	-	ENSMUST00000165838.7,ENSMUSG00000002274.12	Metrn	ENSMUSG00000002274.12	ENSMUST00000165838.7	protein_coding	chr17:25794571-25797045
chr17	25808974	25809106	+	G-rich	Low_complexity	Low_complexity	chr17	25809084	25809086	+	ENSMUST00000045692.7,ENSMUSG00000025738.7	Fbxl16	ENSMUSG00000025738.7	ENSMUST00000045692.7	protein_coding	chr17:25809085-25821244
chr17	25809041	25809104	+	GA-rich	Low_complexity	Low_complexity	chr17	25809084	25809086	+	ENSMUST00000045692.7,ENSMUSG00000025738.7	Fbxl16	ENSMUSG00000025738.7	ENSMUST00000045692.7	protein_coding	chr17:25809085-25821244
chr17	25837080	25837127	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr17	25837081	25837083	-	ENSMUST00000183929.7,ENSMUSG00000025735.13	Rhbdl1	ENSMUSG00000025735.13	ENSMUST00000183929.7	protein_coding	chr17:25834602-25837082
chr17	25919663	25919702	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	25919689	25919691	-	ENSMUST00000172168.1,ENSMUSG00000025730.14	Rab40c	ENSMUSG00000025730.14	ENSMUST00000172168.1	protein_coding	chr17:25884763-25919690
chr17	26018375	26018508	+	B1_Mur1	SINE	Alu	chr17	26018459	26018461	-	ENSMUST00000148021.1,ENSMUSG00000037098.17	Rab11fip3	ENSMUSG00000037098.17	ENSMUST00000148021.1	protein_coding	chr17:26013845-26018460
chr17	26138901	26138962	+	GC_rich	Low_complexity	Low_complexity	chr17	26138949	26138951	+	ENSMUST00000163421.7,ENSMUSG00000024182.16	Axin1	ENSMUSG00000024182.16	ENSMUST00000163421.7	protein_coding	chr17:26138950-26195294
chr17	26201223	26201367	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr17	26201349	26201351	-	ENSMUST00000025019.8,ENSMUSG00000073433.11	Arhgdig	ENSMUSG00000073433.11	ENSMUST00000025019.8	protein_coding	chr17:26199183-26201350
chr17	26414789	26414931	+	GC_rich	Low_complexity	Low_complexity	chr17	26414828	26414830	+	ENSMUST00000182897.7,ENSMUSG00000034413.14	Neurl1b	ENSMUSG00000034413.14	ENSMUST00000182897.7	protein_coding	chr17:26414829-26441795
chr17	26414789	26414931	+	GC_rich	Low_complexity	Low_complexity	chr17	26414828	26414830	+	ENSMUST00000183077.7,ENSMUSG00000034413.14	Neurl1b	ENSMUSG00000034413.14	ENSMUST00000183077.7	protein_coding	chr17:26414829-26441795
chr17	26580798	26580937	+	B1_Mus1	SINE	Alu	chr17	26580926	26580928	-	ENSMUST00000178795.1,ENSMUSG00000094969.1	Gm22420	ENSMUSG00000094969.1	ENSMUST00000178795.1	miRNA	chr17:26580802-26580927
chr17	26742970	26743106	+	(ATG)n	Simple_repeat	Simple_repeat	chr17	26742983	26742985	+	ENSMUST00000132972.1,ENSMUSG00000048249.14	Crebrf	ENSMUSG00000048249.14	ENSMUST00000132972.1	protein_coding	chr17:26742984-26758187
chr17	26790750	26790846	+	PB1D7	SINE	Alu	chr17	26790774	26790776	+	ENSMUST00000131362.1,ENSMUSG00000024191.14	Bnip1	ENSMUSG00000024191.14	ENSMUST00000131362.1	protein_coding	chr17:26790775-26792565
chr17	26941285	26941444	+	CT-rich	Low_complexity	Low_complexity	chr17	26941381	26941383	+	ENSMUST00000229490.1,ENSMUSG00000067629.13	Syngap1	ENSMUSG00000067629.13	ENSMUST00000229490.1	protein_coding	chr17:26941382-26970601
chr17	26941285	26941444	+	CT-rich	Low_complexity	Low_complexity	chr17	26941441	26941443	+	ENSMUST00000201702.4,ENSMUSG00000067629.13	Syngap1	ENSMUSG00000067629.13	ENSMUST00000201702.4	protein_coding	chr17:26941442-26970581
chr17	27353746	27354324	-	IAPEz-int	LTR	ERVK	chr17	27354110	27354112	+	ENSMUST00000232133.1,ENSMUSG00000116879.1	AC125141.3	ENSMUSG00000116879.1	ENSMUST00000232133.1	lincRNA	chr17:27354111-27367492
chr17	27354577	27355047	-	IAPLTR2_Mm	LTR	ERVK	chr17	27354667	27354669	-	ENSMUST00000231851.1,ENSMUSG00000116692.1	AC125141.1	ENSMUSG00000116692.1	ENSMUST00000231851.1	lincRNA	chr17:27353861-27354668
chr17	27521275	27521726	+	MTD	LTR	ERVL-MaLR	chr17	27521402	27521404	-	ENSMUST00000231416.1,ENSMUSG00000063239.17	Grm4	ENSMUSG00000063239.17	ENSMUST00000231416.1	protein_coding	chr17:27425907-27521403
chr17	27552908	27553101	+	L1M5	LINE	L1	chr17	27552971	27552973	+	ENSMUST00000231925.1,ENSMUSG00000116548.1	AC127341.1	ENSMUSG00000116548.1	ENSMUST00000231925.1	TEC	chr17:27552972-27553323
chr17	27556494	27556531	+	GC_rich	Low_complexity	Low_complexity	chr17	27556517	27556519	-	ENSMUST00000231483.1,ENSMUSG00000116657.1	AC127341.3	ENSMUSG00000116657.1	ENSMUST00000231483.1	antisense	chr17:27545707-27556518
chr17	27556494	27556531	+	GC_rich	Low_complexity	Low_complexity	chr17	27556496	27556498	+	ENSMUST00000118599.8,ENSMUSG00000046711.16	Hmga1	ENSMUSG00000046711.16	ENSMUST00000118599.8	protein_coding	chr17:27556497-27562846
chr17	27611586	27611697	+	PB1D9	SINE	Alu	chr17	27611667	27611669	-	ENSMUST00000127236.2,ENSMUSG00000024213.14	Nudt3	ENSMUSG00000024213.14	ENSMUST00000127236.2	protein_coding	chr17:27582008-27611668
chr17	27623250	27623278	+	GC_rich	Low_complexity	Low_complexity	chr17	27623262	27623264	-	ENSMUST00000062397.12,ENSMUSG00000024213.14	Nudt3	ENSMUSG00000024213.14	ENSMUST00000062397.12	protein_coding	chr17:27580788-27623263
chr17	27623250	27623278	+	GC_rich	Low_complexity	Low_complexity	chr17	27623262	27623264	-	ENSMUST00000176876.7,ENSMUSG00000024213.14	Nudt3	ENSMUSG00000024213.14	ENSMUST00000176876.7	protein_coding	chr17:27581961-27623263
chr17	27623250	27623278	+	GC_rich	Low_complexity	Low_complexity	chr17	27623262	27623264	-	ENSMUST00000146321.2,ENSMUSG00000024213.14	Nudt3	ENSMUSG00000024213.14	ENSMUST00000146321.2	protein_coding	chr17:27595146-27623263
chr17	27635535	27635587	+	ID_B1	SINE	B4	chr17	27635544	27635546	-	ENSMUST00000114882.8,ENSMUSG00000052146.16	Rps10	ENSMUSG00000052146.16	ENSMUST00000114882.8	protein_coding	chr17:27630418-27635545
chr17	27636614	27636693	-	PB1D7	SINE	Alu	chr17	27636668	27636670	-	ENSMUST00000114881.8,ENSMUSG00000052146.16	Rps10	ENSMUSG00000052146.16	ENSMUST00000114881.8	protein_coding	chr17:27630424-27636669
chr17	27655541	27655569	+	GC_rich	Low_complexity	Low_complexity	chr17	27655547	27655549	+	ENSMUST00000045896.10,ENSMUSG00000040276.15	Pacsin1	ENSMUSG00000040276.15	ENSMUST00000045896.10	protein_coding	chr17:27655548-27711111
chr17	27706441	27706523	+	B3A	SINE	B2	chr17	27706479	27706481	+	ENSMUST00000232225.1,ENSMUSG00000040276.15	Pacsin1	ENSMUSG00000040276.15	ENSMUST00000232225.1	protein_coding	chr17:27706480-27707280
chr17	27784361	27784391	+	AT_rich	Low_complexity	Low_complexity	chr17	27784378	27784380	+	ENSMUST00000232887.1,ENSMUSG00000080731.2	Rps2-ps9	ENSMUSG00000080731.2	ENSMUST00000232887.1	transcribed_processed_pseudogene	chr17:27784379-27785060
chr17	27837849	27838337	+	MT2_Mm	LTR	ERVL	chr17	27838149	27838151	+	ENSMUST00000232873.1,ENSMUSG00000024217.10	Snrpc	ENSMUSG00000024217.10	ENSMUST00000232873.1	protein_coding	chr17:27838150-27851968
chr17	27909556	27909608	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	27909557	27909559	+	ENSMUST00000233866.1,ENSMUSG00000024219.16	Anks1	ENSMUSG00000024219.16	ENSMUST00000233866.1	protein_coding	chr17:27909558-27913798
chr17	28068736	28068919	-	B4A	SINE	B4	chr17	28068790	28068792	-	ENSMUST00000233150.1,ENSMUSG00000062859.15	Tcp11	ENSMUSG00000062859.15	ENSMUST00000233150.1	protein_coding	chr17:28066751-28068791
chr17	28080395	28080563	+	C-rich	Low_complexity	Low_complexity	chr17	28080522	28080524	-	ENSMUST00000233878.1,ENSMUSG00000062859.15	Tcp11	ENSMUSG00000062859.15	ENSMUST00000233878.1	protein_coding	chr17:28080280-28080523
chr17	28142055	28142171	+	GA-rich	Low_complexity	Low_complexity	chr17	28142140	28142142	+	ENSMUST00000043503.10,ENSMUSG00000038677.14	Scube3	ENSMUSG00000038677.14	ENSMUST00000043503.10	protein_coding	chr17:28142141-28174854
chr17	28293195	28293345	+	B1_Mm	SINE	Alu	chr17	28293245	28293247	+	ENSMUST00000233383.1,ENSMUSG00000002250.16	Ppard	ENSMUSG00000002250.16	ENSMUST00000233383.1	protein_coding	chr17:28293246-28296971
chr17	28319485	28319675	+	B2_Mm1t	SINE	B2	chr17	28319601	28319603	-	ENSMUST00000232919.1,ENSMUSG00000117027.1	CT025652.1	ENSMUSG00000117027.1	ENSMUST00000232919.1	antisense	chr17:28318186-28319602
chr17	28350796	28350877	+	G-rich	Low_complexity	Low_complexity	chr17	28350816	28350818	-	ENSMUST00000156862.2,ENSMUSG00000002249.21	Tead3	ENSMUSG00000002249.21	ENSMUST00000156862.2	protein_coding	chr17:28331714-28350817
chr17	28356688	28356879	+	ID_B1	SINE	B4	chr17	28356807	28356809	-	ENSMUST00000142143.2,ENSMUSG00000037446.14	Tulp1	ENSMUSG00000037446.14	ENSMUST00000142143.2	protein_coding	chr17:28352538-28356808
chr17	28418417	28418696	-	BGLII	LTR	ERVK	chr17	28418503	28418505	-	ENSMUST00000233372.1,ENSMUSG00000024222.17	Fkbp5	ENSMUSG00000024222.17	ENSMUST00000233372.1	protein_coding	chr17:28400958-28418504
chr17	28418417	28418696	-	BGLII	LTR	ERVK	chr17	28418526	28418528	-	ENSMUST00000233307.1,ENSMUSG00000024222.17	Fkbp5	ENSMUSG00000024222.17	ENSMUST00000233307.1	protein_coding	chr17:28402683-28418527
chr17	28426288	28426442	+	B2_Mm2	SINE	B2	chr17	28426429	28426431	-	ENSMUST00000233201.1,ENSMUSG00000117313.1	AC154912.5	ENSMUSG00000117313.1	ENSMUST00000233201.1	sense_intronic	chr17:28424723-28426430
chr17	28446378	28446538	+	L1MB4	LINE	L1	chr17	28446499	28446501	+	ENSMUST00000232983.1,ENSMUSG00000117084.1	AC154912.1	ENSMUSG00000117084.1	ENSMUST00000232983.1	antisense	chr17:28446500-28456457
chr17	28446860	28446966	+	7SK	RNA	RNA	chr17	28446860	28446862	+	ENSMUST00000157397.1,ENSMUSG00000088022.1	Gm22146	ENSMUSG00000088022.1	ENSMUST00000157397.1	misc_RNA	chr17:28446861-28447148
chr17	28460998	28461148	-	B1_Mus2	SINE	Alu	chr17	28461094	28461096	-	ENSMUST00000233091.1,ENSMUSG00000117294.1	AC154912.3	ENSMUSG00000117294.1	ENSMUST00000233091.1	TEC	chr17:28457484-28461095
chr17	28486117	28486159	+	GC_rich	Low_complexity	Low_complexity	chr17	28486148	28486150	-	ENSMUST00000079413.10,ENSMUSG00000024222.17	Fkbp5	ENSMUSG00000024222.17	ENSMUST00000079413.10	protein_coding	chr17:28399094-28486149
chr17	28511353	28511481	+	G-rich	Low_complexity	Low_complexity	chr17	28511356	28511358	-	ENSMUST00000233102.1,ENSMUSG00000024222.17	Fkbp5	ENSMUSG00000024222.17	ENSMUST00000233102.1	protein_coding	chr17:28399226-28511357
chr17	28526318	28526460	-	B1_Mus1	SINE	Alu	chr17	28526331	28526333	+	ENSMUST00000177656.1,ENSMUSG00000095947.1	Gm25195	ENSMUSG00000095947.1	ENSMUST00000177656.1	miRNA	chr17:28526332-28526457
chr17	28601197	28601331	+	B1_Mus1	SINE	Alu	chr17	28601262	28601264	-	ENSMUST00000145730.1,ENSMUSG00000004865.16	Srpk1	ENSMUSG00000004865.16	ENSMUST00000145730.1	protein_coding	chr17:28600336-28601263
chr17	28769216	28769342	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	28769296	28769298	+	ENSMUST00000233984.1,ENSMUSG00000004864.13	Mapk13	ENSMUSG00000004864.13	ENSMUST00000233984.1	protein_coding	chr17:28769297-28780233
chr17	28769216	28769342	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	28769335	28769337	+	ENSMUST00000124099.7,ENSMUSG00000004864.13	Mapk13	ENSMUSG00000004864.13	ENSMUST00000124099.7	protein_coding	chr17:28769336-28778219
chr17	28809630	28809699	-	B1_Mus2	SINE	Alu	chr17	28809658	28809660	+	ENSMUST00000126868.7,ENSMUSG00000063952.16	Brpf3	ENSMUSG00000063952.16	ENSMUST00000126868.7	protein_coding	chr17:28809659-28817174
chr17	28952387	28952418	+	GC_rich	Low_complexity	Low_complexity	chr17	28952407	28952409	-	ENSMUST00000233094.1,ENSMUSG00000117080.1	CT025867.1	ENSMUSG00000117080.1	ENSMUST00000233094.1	bidirectional_promoter_lncRNA	chr17:28951855-28952408
chr17	28980275	28980405	-	B4A	SINE	B4	chr17	28980328	28980330	-	ENSMUST00000125070.8,ENSMUSG00000024006.17	Stk38	ENSMUSG00000024006.17	ENSMUST00000125070.8	protein_coding	chr17:28974343-28980329
chr17	28989993	28990148	-	U2	snRNA	snRNA	chr17	28990147	28990149	-	ENSMUST00000122683.1,ENSMUSG00000084632.1	Gm23887	ENSMUSG00000084632.1	ENSMUST00000122683.1	snRNA	chr17:28989977-28990148
chr17	29000581	29000813	+	MTE2a	LTR	ERVL-MaLR	chr17	29000690	29000692	-	ENSMUST00000232836.1,ENSMUSG00000024006.17	Stk38	ENSMUSG00000024006.17	ENSMUST00000232836.1	protein_coding	chr17:28971718-29000691
chr17	29007957	29008020	+	GC_rich	Low_complexity	Low_complexity	chr17	29007994	29007996	-	ENSMUST00000009138.12,ENSMUSG00000024006.17	Stk38	ENSMUSG00000024006.17	ENSMUST00000009138.12	protein_coding	chr17:28970880-29007995
chr17	29007957	29008020	+	GC_rich	Low_complexity	Low_complexity	chr17	29007994	29007996	-	ENSMUST00000119274.2,ENSMUSG00000024006.17	Stk38	ENSMUSG00000024006.17	ENSMUST00000119274.2	protein_coding	chr17:28970880-29007995
chr17	29007957	29008020	+	GC_rich	Low_complexity	Low_complexity	chr17	29007957	29007959	-	ENSMUST00000233606.1,ENSMUSG00000024006.17	Stk38	ENSMUSG00000024006.17	ENSMUST00000233606.1	protein_coding	chr17:28974304-29007958
chr17	29007957	29008020	+	GC_rich	Low_complexity	Low_complexity	chr17	29007964	29007966	-	ENSMUST00000232724.1,ENSMUSG00000024006.17	Stk38	ENSMUSG00000024006.17	ENSMUST00000232724.1	protein_coding	chr17:28980154-29007965
chr17	29015732	29015923	+	B3	SINE	B2	chr17	29015896	29015898	-	ENSMUST00000137730.1,ENSMUSG00000086154.2	Gm16196	ENSMUSG00000086154.2	ENSMUST00000137730.1	bidirectional_promoter_lncRNA	chr17:29014642-29015897
chr17	29021287	29021434	+	B1_Mus2	SINE	Alu	chr17	29021292	29021294	+	ENSMUST00000130607.1,ENSMUSG00000087308.1	Gm16195	ENSMUSG00000087308.1	ENSMUST00000130607.1	lincRNA	chr17:29021293-29022402
chr17	29057860	29058028	-	ID_B1	SINE	B4	chr17	29057960	29057962	+	ENSMUST00000233640.1,ENSMUSG00000117007.1	AC167363.1	ENSMUSG00000117007.1	ENSMUST00000233640.1	lincRNA	chr17:29057961-29060167
chr17	29073781	29073928	-	ID_B1	SINE	B4	chr17	29073798	29073800	-	ENSMUST00000232856.1,ENSMUSG00000085912.2	Trp53cor1	ENSMUSG00000085912.2	ENSMUST00000232856.1	lincRNA	chr17:29059054-29073799
chr17	29097887	29097913	+	(T)n	Simple_repeat	Simple_repeat	chr17	29097899	29097901	+	ENSMUST00000122348.2,ENSMUSG00000023067.14	Cdkn1a	ENSMUSG00000023067.14	ENSMUST00000122348.2	protein_coding	chr17:29097900-29099577
chr17	29135043	29135122	+	ID_B1	SINE	B4	chr17	29135055	29135057	+	ENSMUST00000233860.1,ENSMUSG00000064147.7	Rab44	ENSMUSG00000064147.7	ENSMUST00000233860.1	protein_coding	chr17:29135056-29148976
chr17	29135043	29135122	+	ID_B1	SINE	B4	chr17	29135055	29135057	+	ENSMUST00000087942.5,ENSMUSG00000064147.7	Rab44	ENSMUSG00000064147.7	ENSMUST00000087942.5	protein_coding	chr17:29135056-29148976
chr17	29145697	29145748	+	B3	SINE	B2	chr17	29145718	29145720	+	ENSMUST00000233567.1,ENSMUSG00000064147.7	Rab44	ENSMUSG00000064147.7	ENSMUST00000233567.1	protein_coding	chr17:29145719-29148980
chr17	29223265	29223441	+	B2_Mm1t	SINE	B2	chr17	29223295	29223297	+	ENSMUST00000235091.1,ENSMUSG00000117610.1	AC162182.2	ENSMUSG00000117610.1	ENSMUST00000235091.1	TEC	chr17:29223296-29223441
chr17	29238127	29238180	+	GC_rich	Low_complexity	Low_complexity	chr17	29238166	29238168	-	ENSMUST00000024805.14,ENSMUSG00000024008.16	Cpne5	ENSMUSG00000024008.16	ENSMUST00000024805.14	protein_coding	chr17:29155556-29238167
chr17	29269012	29269077	+	GC_rich	Low_complexity	Low_complexity	chr17	29269041	29269043	+	ENSMUST00000234256.1,ENSMUSG00000052712.17	BC004004	ENSMUSG00000052712.17	ENSMUST00000234256.1	protein_coding	chr17:29269042-29301525
chr17	29269012	29269077	+	GC_rich	Low_complexity	Low_complexity	chr17	29269049	29269051	+	ENSMUST00000234459.1,ENSMUSG00000052712.17	BC004004	ENSMUSG00000052712.17	ENSMUST00000234459.1	protein_coding	chr17:29269050-29282819
chr17	29273988	29274141	-	L2	LINE	L2	chr17	29274074	29274076	+	ENSMUST00000149405.3,ENSMUSG00000052712.17	BC004004	ENSMUSG00000052712.17	ENSMUST00000149405.3	protein_coding	chr17:29274075-29301529
chr17	29276656	29276783	-	ID_B1	SINE	B4	chr17	29276681	29276683	+	ENSMUST00000234714.1,ENSMUSG00000052712.17	BC004004	ENSMUSG00000052712.17	ENSMUST00000234714.1	protein_coding	chr17:29276682-29282189
chr17	29298279	29298422	+	L4_A_Mam	LINE	RTE-X	chr17	29298283	29298285	+	ENSMUST00000150874.1,ENSMUSG00000052712.17	BC004004	ENSMUSG00000052712.17	ENSMUST00000150874.1	protein_coding	chr17:29298284-29301525
chr17	29317623	29317751	+	ORR1B1-int	LTR	ERVL-MaLR	chr17	29317679	29317681	+	ENSMUST00000234782.1,ENSMUSG00000024011.17	Pi16	ENSMUSG00000024011.17	ENSMUST00000234782.1	protein_coding	chr17:29317680-29328893
chr17	29317637	29317756	+	MT2B	LTR	ERVL	chr17	29317679	29317681	+	ENSMUST00000234782.1,ENSMUSG00000024011.17	Pi16	ENSMUSG00000024011.17	ENSMUST00000234782.1	protein_coding	chr17:29317680-29328893
chr17	29317663	29317794	+	B1_Mus1	SINE	Alu	chr17	29317679	29317681	+	ENSMUST00000234782.1,ENSMUSG00000024011.17	Pi16	ENSMUSG00000024011.17	ENSMUST00000234782.1	protein_coding	chr17:29317680-29328893
chr17	29368535	29368976	-	RMER17C	LTR	ERVK	chr17	29368966	29368968	+	ENSMUST00000137644.2,ENSMUSG00000024013.15	Fgd2	ENSMUSG00000024013.15	ENSMUST00000137644.2	protein_coding	chr17:29368967-29379294
chr17	29432741	29432850	+	B1F	SINE	Alu	chr17	29432834	29432836	+	ENSMUST00000234231.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234231.1	lincRNA	chr17:29432835-29466072
chr17	29445818	29446014	-	B3A	SINE	B2	chr17	29445904	29445906	+	ENSMUST00000234887.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234887.1	lincRNA	chr17:29445905-29466085
chr17	29457618	29457753	-	B1F1	SINE	Alu	chr17	29457736	29457738	+	ENSMUST00000234101.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234101.1	lincRNA	chr17:29457737-29466072
chr17	29457620	29457784	-	ID_B1	SINE	B4	chr17	29457736	29457738	+	ENSMUST00000234101.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234101.1	lincRNA	chr17:29457737-29466072
chr17	29464983	29465018	+	(CA)n	Simple_repeat	Simple_repeat	chr17	29465003	29465005	+	ENSMUST00000234105.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234105.1	lincRNA	chr17:29465004-29466072
chr17	29464983	29465018	+	(CA)n	Simple_repeat	Simple_repeat	chr17	29465007	29465009	+	ENSMUST00000234786.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234786.1	lincRNA	chr17:29465008-29466070
chr17	29464983	29465018	+	(CA)n	Simple_repeat	Simple_repeat	chr17	29465007	29465009	+	ENSMUST00000234298.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234298.1	lincRNA	chr17:29465008-29466072
chr17	29464983	29465018	+	(CA)n	Simple_repeat	Simple_repeat	chr17	29464986	29464988	-	ENSMUST00000234333.1,ENSMUSG00000097125.2	Gm26885	ENSMUSG00000097125.2	ENSMUST00000234333.1	antisense	chr17:29462619-29464987
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465043	29465045	+	ENSMUST00000234283.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234283.1	lincRNA	chr17:29465044-29466072
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465043	29465045	+	ENSMUST00000234440.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234440.1	lincRNA	chr17:29465044-29466078
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465043	29465045	+	ENSMUST00000235077.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000235077.1	lincRNA	chr17:29465044-29466267
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465049	29465051	+	ENSMUST00000234306.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234306.1	lincRNA	chr17:29465050-29466070
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465049	29465051	+	ENSMUST00000233990.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000233990.1	lincRNA	chr17:29465050-29466072
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465049	29465051	+	ENSMUST00000235076.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000235076.1	lincRNA	chr17:29465050-29466079
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465049	29465051	+	ENSMUST00000234336.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234336.1	lincRNA	chr17:29465050-29466088
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465049	29465051	+	ENSMUST00000234548.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234548.1	lincRNA	chr17:29465050-29466267
chr17	29465041	29465160	+	RSINE1	SINE	B4	chr17	29465059	29465061	+	ENSMUST00000234634.1,ENSMUSG00000117427.1	AC163629.2	ENSMUSG00000117427.1	ENSMUST00000234634.1	lincRNA	chr17:29465060-29466072
chr17	29493396	29493464	-	B1_Mus2	SINE	Alu	chr17	29493406	29493408	+	ENSMUST00000234270.1,ENSMUSG00000024014.8	Pim1	ENSMUSG00000024014.8	ENSMUST00000234270.1	protein_coding	chr17:29493407-29494964
chr17	29595404	29595556	-	B3A	SINE	B2	chr17	29595537	29595539	+	ENSMUST00000183866.1,ENSMUSG00000098764.1	Mir7667	ENSMUSG00000098764.1	ENSMUST00000183866.1	miRNA	chr17:29595538-29595600
chr17	29615912	29616319	+	MTC	LTR	ERVL-MaLR	chr17	29616135	29616137	+	ENSMUST00000173449.1,ENSMUSG00000090083.11	Rnf8	ENSMUSG00000090083.11	ENSMUST00000173449.1	protein_coding	chr17:29616136-29627073
chr17	29633395	29633573	+	B3	SINE	B2	chr17	29633517	29633519	+	ENSMUST00000234816.1,ENSMUSG00000090083.11	Rnf8	ENSMUSG00000090083.11	ENSMUST00000234816.1	protein_coding	chr17:29633518-29635280
chr17	29660605	29660627	+	GC_rich	Low_complexity	Low_complexity	chr17	29660613	29660615	+	ENSMUST00000235031.1,ENSMUSG00000024019.18	Cmtr1	ENSMUSG00000024019.18	ENSMUST00000235031.1	protein_coding	chr17:29660614-29690394
chr17	29660605	29660627	+	GC_rich	Low_complexity	Low_complexity	chr17	29660620	29660622	+	ENSMUST00000234911.1,ENSMUSG00000024019.18	Cmtr1	ENSMUSG00000024019.18	ENSMUST00000234911.1	protein_coding	chr17:29660621-29702272
chr17	29660780	29660815	+	GC_rich	Low_complexity	Low_complexity	chr17	29660806	29660808	+	ENSMUST00000130423.3,ENSMUSG00000024019.18	Cmtr1	ENSMUSG00000024019.18	ENSMUST00000130423.3	protein_coding	chr17:29660807-29676146
chr17	29694379	29694489	-	PB1D9	SINE	Alu	chr17	29694409	29694411	+	ENSMUST00000235028.1,ENSMUSG00000024019.18	Cmtr1	ENSMUSG00000024019.18	ENSMUST00000235028.1	protein_coding	chr17:29694410-29701045
chr17	29835333	29835546	-	B3	SINE	B2	chr17	29835357	29835359	-	ENSMUST00000170786.2,ENSMUSG00000043557.16	Mdga1	ENSMUSG00000043557.16	ENSMUST00000170786.2	protein_coding	chr17:29832264-29835358
chr17	29888614	29888733	+	C-rich	Low_complexity	Low_complexity	chr17	29888707	29888709	-	ENSMUST00000171691.8,ENSMUSG00000043557.16	Mdga1	ENSMUSG00000043557.16	ENSMUST00000171691.8	protein_coding	chr17:29827949-29888708
chr17	29890082	29890105	+	AT_rich	Low_complexity	Low_complexity	chr17	29890083	29890085	+	ENSMUST00000149552.2,ENSMUSG00000086534.2	Gm16758	ENSMUSG00000086534.2	ENSMUST00000149552.2	antisense	chr17:29890084-29897067
chr17	30005093	30005168	+	C-rich	Low_complexity	Low_complexity	chr17	30005153	30005155	+	ENSMUST00000234238.1,ENSMUSG00000044477.12	Zfand3	ENSMUSG00000044477.12	ENSMUST00000234238.1	protein_coding	chr17:30005154-30135641
chr17	30311027	30311151	+	U6	snRNA	snRNA	chr17	30311078	30311080	+	ENSMUST00000158597.1,ENSMUSG00000089222.1	Gm25049	ENSMUSG00000089222.1	ENSMUST00000158597.1	snRNA	chr17:30311079-30311151
chr17	30782025	30782129	-	U6	snRNA	snRNA	chr17	30782128	30782130	-	ENSMUST00000083205.2,ENSMUSG00000094785.1	Gm24661	ENSMUSG00000094785.1	ENSMUST00000083205.2	snRNA	chr17:30782026-30782129
chr17	30967176	30967345	-	RLTR17B_Mm	LTR	ERVK	chr17	30967196	30967198	+	ENSMUST00000174990.1,ENSMUSG00000092731.1	Gm24026	ENSMUSG00000092731.1	ENSMUST00000174990.1	miRNA	chr17:30967197-30967294
chr17	31059603	31059730	+	5S	rRNA	rRNA	chr17	31059603	31059605	+	ENSMUST00000158997.1,ENSMUSG00000089622.1	Gm25447	ENSMUSG00000089622.1	ENSMUST00000158997.1	rRNA	chr17:31059604-31059731
chr17	31152742	31152824	-	MTEb	LTR	ERVL-MaLR	chr17	31152751	31152753	+	ENSMUST00000139773.7,ENSMUSG00000086010.7	Gm15318	ENSMUSG00000086010.7	ENSMUST00000139773.7	antisense	chr17:31152752-31161488
chr17	31152742	31152824	-	MTEb	LTR	ERVL-MaLR	chr17	31152751	31152753	+	ENSMUST00000148215.7,ENSMUSG00000086010.7	Gm15318	ENSMUSG00000086010.7	ENSMUST00000148215.7	antisense	chr17:31152752-31162323
chr17	31152742	31152824	-	MTEb	LTR	ERVL-MaLR	chr17	31152751	31152753	+	ENSMUST00000146320.1,ENSMUSG00000086010.7	Gm15318	ENSMUSG00000086010.7	ENSMUST00000146320.1	antisense	chr17:31152752-31163052
chr17	31211952	31212308	+	ORR1C1	LTR	ERVL-MaLR	chr17	31212112	31212114	+	ENSMUST00000151620.7,ENSMUSG00000042345.14	Ubash3a	ENSMUSG00000042345.14	ENSMUST00000151620.7	protein_coding	chr17:31212113-31242202
chr17	31211952	31212308	+	ORR1C1	LTR	ERVL-MaLR	chr17	31212296	31212298	+	ENSMUST00000147686.1,ENSMUSG00000042345.14	Ubash3a	ENSMUSG00000042345.14	ENSMUST00000147686.1	protein_coding	chr17:31212297-31217982
chr17	31386225	31386246	+	GC_rich	Low_complexity	Low_complexity	chr17	31386233	31386235	+	ENSMUST00000047168.11,ENSMUSG00000041119.11	Pde9a	ENSMUSG00000041119.11	ENSMUST00000047168.11	protein_coding	chr17:31386234-31476310
chr17	31512668	31512793	-	MLT1H-int	LTR	ERVL-MaLR	chr17	31512750	31512752	-	ENSMUST00000171171.7,ENSMUSG00000024037.12	Wdr4	ENSMUSG00000024037.12	ENSMUST00000171171.7	protein_coding	chr17:31494323-31512751
chr17	31557915	31558239	-	ORR1F	LTR	ERVL-MaLR	chr17	31558191	31558193	+	ENSMUST00000160270.1,ENSMUSG00000013562.12	4833413E03Rik	ENSMUSG00000013562.12	ENSMUST00000160270.1	lincRNA	chr17:31558192-31559113
chr17	31591704	31591796	+	L1MD	LINE	L1	chr17	31591731	31591733	+	ENSMUST00000175709.1,ENSMUSG00000006705.12	Pknox1	ENSMUSG00000006705.12	ENSMUST00000175709.1	protein_coding	chr17:31591732-31592158
chr17	31594713	31594855	-	L1MD	LINE	L1	chr17	31594820	31594822	+	ENSMUST00000175812.1,ENSMUSG00000006705.12	Pknox1	ENSMUSG00000006705.12	ENSMUST00000175812.1	protein_coding	chr17:31594821-31599601
chr17	31855797	31855819	+	GC_rich	Low_complexity	Low_complexity	chr17	31855803	31855805	-	ENSMUST00000024839.5,ENSMUSG00000024042.7	Sik1	ENSMUSG00000024042.7	ENSMUST00000024839.5	protein_coding	chr17:31844250-31855804
chr17	31899133	31899346	+	L1MC1	LINE	L1	chr17	31899177	31899179	-	ENSMUST00000234078.1,ENSMUSG00000117562.1	AC138228.1	ENSMUSG00000117562.1	ENSMUST00000234078.1	lincRNA	chr17:31896419-31899178
chr17	32107305	32107414	-	PB1D10	SINE	Alu	chr17	32107349	32107351	-	ENSMUST00000183934.1,ENSMUSG00000002791.16	Pdxk-ps	ENSMUSG00000002791.16	ENSMUST00000183934.1	transcribed_unprocessed_pseudogene	chr17:32078797-32107350
chr17	32284100	32284129	+	(TCC)n	Simple_repeat	Simple_repeat	chr17	32284108	32284110	-	ENSMUST00000121285.7,ENSMUSG00000024002.17	Brd4	ENSMUSG00000024002.17	ENSMUST00000121285.7	protein_coding	chr17:32196274-32284109
chr17	32284100	32284129	+	(TCC)n	Simple_repeat	Simple_repeat	chr17	32284108	32284110	-	ENSMUST00000120276.8,ENSMUSG00000024002.17	Brd4	ENSMUSG00000024002.17	ENSMUST00000120276.8	protein_coding	chr17:32204910-32284109
chr17	32369421	32369738	+	ERVB7_1-LTR_MM	LTR	ERVK	chr17	32369451	32369453	-	ENSMUST00000169741.1,ENSMUSG00000024050.16	Wiz	ENSMUSG00000024050.16	ENSMUST00000169741.1	protein_coding	chr17:32361814-32369452
chr17	32389088	32389229	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr17	32389115	32389117	-	ENSMUST00000170603.2,ENSMUSG00000024050.16	Wiz	ENSMUSG00000024050.16	ENSMUST00000170603.2	protein_coding	chr17:32387573-32389116
chr17	32389304	32389381	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	32389375	32389377	-	ENSMUST00000171728.2,ENSMUSG00000024050.16	Wiz	ENSMUSG00000024050.16	ENSMUST00000171728.2	protein_coding	chr17:32369305-32389376
chr17	32395284	32395669	+	MTB_Mm	LTR	ERVL-MaLR	chr17	32395370	32395372	-	ENSMUST00000143808.1,ENSMUSG00000052142.15	Rasal3	ENSMUSG00000052142.15	ENSMUST00000143808.1	protein_coding	chr17:32393923-32395371
chr17	32800568	32800730	-	U1	snRNA	snRNA	chr17	32800729	32800731	-	ENSMUST00000104150.1,ENSMUSG00000077338.1	Gm23294	ENSMUSG00000077338.1	ENSMUST00000104150.1	snRNA	chr17:32800567-32800730
chr17	32800802	32800955	-	MurSatRep1	Unknown	Unknown	chr17	32800937	32800939	-	ENSMUST00000080905.6,ENSMUSG00000055202.11	Zfp811	ENSMUSG00000055202.11	ENSMUST00000080905.6	protein_coding	chr17:32797406-32800938
chr17	32822021	32822268	-	MurSatRep1	Unknown	Unknown	chr17	32822199	32822201	-	ENSMUST00000179695.4,ENSMUSG00000095253.4	Zfp799	ENSMUSG00000095253.4	ENSMUST00000179695.4	protein_coding	chr17:32815455-32822200
chr17	32857568	32857831	+	MurSatRep1	Unknown	Unknown	chr17	32857605	32857607	+	ENSMUST00000234058.1,ENSMUSG00000117373.1	CT485613.2	ENSMUSG00000117373.1	ENSMUST00000234058.1	transcribed_unprocessed_pseudogene	chr17:32857606-32865479
chr17	32885952	32886119	-	MurSatRep1	Unknown	Unknown	chr17	32886082	32886084	-	ENSMUST00000178401.1,ENSMUSG00000095325.3	Zfp870	ENSMUSG00000095325.3	ENSMUST00000178401.1	protein_coding	chr17:32879228-32886083
chr17	33648958	33649042	+	ID4_	SINE	ID	chr17	33648978	33648980	-	ENSMUST00000234893.1,ENSMUSG00000059208.15	Hnrnpm	ENSMUSG00000059208.15	ENSMUST00000234893.1	protein_coding	chr17:33646236-33648979
chr17	33703168	33703232	+	LFSINE_Vert	SINE	tRNA	chr17	33703200	33703202	-	ENSMUST00000173454.1,ENSMUSG00000079557.11	March2	ENSMUSG00000079557.11	ENSMUST00000173454.1	protein_coding	chr17:33691839-33703201
chr17	33718591	33718622	+	(CCCGG)n	Simple_repeat	Simple_repeat	chr17	33718590	33718592	-	ENSMUST00000174040.1,ENSMUSG00000079557.11	March2	ENSMUSG00000079557.11	ENSMUST00000174040.1	protein_coding	chr17:33696026-33718591
chr17	33729509	33729584	+	U6	snRNA	snRNA	chr17	33729508	33729510	+	ENSMUST00000158564.1,ENSMUSG00000089189.1	Gm22943	ENSMUSG00000089189.1	ENSMUST00000158564.1	snRNA	chr17:33729509-33729584
chr17	33759979	33760001	+	GC_rich	Low_complexity	Low_complexity	chr17	33759991	33759993	+	ENSMUST00000170103.2,ENSMUSG00000090952.2	Gm17251	ENSMUSG00000090952.2	ENSMUST00000170103.2	bidirectional_promoter_lncRNA	chr17:33759992-33761870
chr17	33785500	33785966	+	RMER17A2	LTR	ERVK	chr17	33785723	33785725	-	ENSMUST00000173637.1,ENSMUSG00000092602.1	4931413I07Rik	ENSMUSG00000092602.1	ENSMUST00000173637.1	lincRNA	chr17:33783340-33785724
chr17	33825009	33825153	-	B1_Mus2	SINE	Alu	chr17	33825044	33825046	+	ENSMUST00000173807.7,ENSMUSG00000041881.13	Ndufa7	ENSMUSG00000041881.13	ENSMUST00000173807.7	protein_coding	chr17:33825045-33838182
chr17	33952619	33952766	-	B2_Mm2	SINE	B2	chr17	33952688	33952690	-	ENSMUST00000174758.7,ENSMUSG00000008668.15	Rps18	ENSMUSG00000008668.15	ENSMUST00000174758.7	protein_coding	chr17:33951999-33952689
chr17	33959662	33959738	+	U6	snRNA	snRNA	chr17	33959662	33959664	+	ENSMUST00000122652.1,ENSMUSG00000084601.1	Gm23111	ENSMUSG00000084601.1	ENSMUST00000122652.1	snRNA	chr17:33959663-33959767
chr17	33980744	33980932	-	ORR1D1	LTR	ERVL-MaLR	chr17	33980743	33980745	-	ENSMUST00000172675.1,ENSMUSG00000092512.1	Gm4152	ENSMUSG00000092512.1	ENSMUST00000172675.1	processed_pseudogene	chr17:33980486-33980744
chr17	34135142	34135223	-	Tigger7	DNA	TcMar-Tigger	chr17	34135181	34135183	+	ENSMUST00000042121.9,ENSMUSG00000037649.9	H2-DMa	ENSMUSG00000037649.9	ENSMUST00000042121.9	protein_coding	chr17:34135182-34139101
chr17	34204056	34204170	+	C-rich	Low_complexity	Low_complexity	chr17	34204079	34204081	+	ENSMUST00000138491.1,ENSMUSG00000024339.12	Tap2	ENSMUSG00000024339.12	ENSMUST00000138491.1	protein_coding	chr17:34204080-34205368
chr17	34205080	34205120	+	(TG)n	Simple_repeat	Simple_repeat	chr17	34205099	34205101	+	ENSMUST00000131105.1,ENSMUSG00000024339.12	Tap2	ENSMUSG00000024339.12	ENSMUST00000131105.1	protein_coding	chr17:34205100-34205567
chr17	34207705	34207963	+	B4A	SINE	B4	chr17	34207705	34207707	+	ENSMUST00000145528.1,ENSMUSG00000024339.12	Tap2	ENSMUSG00000024339.12	ENSMUST00000145528.1	protein_coding	chr17:34207706-34209220
chr17	34249042	34249321	-	L1MC	LINE	L1	chr17	34249056	34249058	+	ENSMUST00000172952.1,ENSMUSG00000092222.1	Gm20506	ENSMUSG00000092222.1	ENSMUST00000172952.1	lincRNA	chr17:34249057-34250264
chr17	34267016	34267122	-	B1_Mur3	SINE	Alu	chr17	34267101	34267103	+	ENSMUST00000173103.1,ENSMUSG00000073421.5	H2-Ab1	ENSMUSG00000073421.5	ENSMUST00000173103.1	protein_coding	chr17:34267102-34268034
chr17	34481118	34481223	-	RLTR20D	LTR	ERVK	chr17	34481118	34481120	-	ENSMUST00000118386.1,ENSMUSG00000083369.1	Gm15332	ENSMUSG00000083369.1	ENSMUST00000118386.1	unprocessed_pseudogene	chr17:34480763-34481119
chr17	34501461	34501560	-	RLTR20D	LTR	ERVK	chr17	34501490	34501492	-	ENSMUST00000120225.1,ENSMUSG00000083020.1	Gm15331	ENSMUSG00000083020.1	ENSMUST00000120225.1	unprocessed_pseudogene	chr17:34501107-34501491
chr17	34521899	34522093	-	MYSERV16_I-int	LTR	ERVK	chr17	34521903	34521905	-	ENSMUST00000121408.1,ENSMUSG00000083441.1	Gm15329	ENSMUSG00000083441.1	ENSMUST00000121408.1	unprocessed_pseudogene	chr17:34521750-34521904
chr17	34585635	34585781	+	B1_Mur2	SINE	Alu	chr17	34585664	34585666	+	ENSMUST00000150441.1,ENSMUSG00000015468.14	Notch4	ENSMUSG00000015468.14	ENSMUST00000150441.1	protein_coding	chr17:34585665-34586623
chr17	34595408	34595562	-	RSINE1	SINE	B4	chr17	34595459	34595461	+	ENSMUST00000173229.1,ENSMUSG00000034673.14	Pbx2	ENSMUSG00000034673.14	ENSMUST00000173229.1	protein_coding	chr17:34595460-34596227
chr17	34627434	34627459	+	GC_rich	Low_complexity	Low_complexity	chr17	34627434	34627436	-	ENSMUST00000171121.8,ENSMUSG00000015474.16	Ppt2	ENSMUSG00000015474.16	ENSMUST00000171121.8	protein_coding	chr17:34616662-34627435
chr17	34643873	34643992	+	B1F2	SINE	Alu	chr17	34643976	34643978	-	ENSMUST00000174600.1,ENSMUSG00000092525.1	Gm20461	ENSMUSG00000092525.1	ENSMUST00000174600.1	lincRNA	chr17:34640846-34643977
chr17	34687695	34687802	-	U6	snRNA	snRNA	chr17	34687801	34687803	-	ENSMUST00000179962.1,ENSMUSG00000095142.1	Gm24389	ENSMUSG00000095142.1	ENSMUST00000179962.1	snRNA	chr17:34687696-34687802
chr17	34825294	34825783	+	LTRIS4	LTR	ERV1	chr17	34825769	34825771	-	ENSMUST00000160193.1,ENSMUSG00000061207.11	Stk19	ENSMUSG00000061207.11	ENSMUST00000160193.1	protein_coding	chr17:34824224-34825770
chr17	34825786	34826477	+	MuRRS4-int	LTR	ERV1	chr17	34826450	34826452	-	ENSMUST00000162954.1,ENSMUSG00000061207.11	Stk19	ENSMUSG00000061207.11	ENSMUST00000162954.1	protein_coding	chr17:34823995-34826451
chr17	34864948	34865122	+	L2	LINE	L2	chr17	34864951	34864953	-	ENSMUST00000127795.1,ENSMUSG00000024371.14	C2	ENSMUSG00000024371.14	ENSMUST00000127795.1	protein_coding	chr17:34864169-34864952
chr17	34879478	34879594	+	B1F	SINE	Alu	chr17	34879482	34879484	+	ENSMUST00000173093.1,ENSMUSG00000049823.9	Zbtb12	ENSMUSG00000049823.9	ENSMUST00000173093.1	protein_coding	chr17:34879483-34895445
chr17	34898454	34898490	+	GC_rich	Low_complexity	Low_complexity	chr17	34898468	34898470	+	ENSMUST00000114033.8,ENSMUSG00000013787.15	Ehmt2	ENSMUSG00000013787.15	ENSMUST00000114033.8	protein_coding	chr17:34898469-34914051
chr17	34898492	34898533	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	34898498	34898500	+	ENSMUST00000078061.12,ENSMUSG00000013787.15	Ehmt2	ENSMUSG00000013787.15	ENSMUST00000078061.12	protein_coding	chr17:34898499-34914047
chr17	34905161	34905245	+	(GGA)n	Simple_repeat	Simple_repeat	chr17	34905202	34905204	+	ENSMUST00000138500.1,ENSMUSG00000013787.15	Ehmt2	ENSMUSG00000013787.15	ENSMUST00000138500.1	protein_coding	chr17:34905203-34906251
chr17	34905161	34905245	+	(GGA)n	Simple_repeat	Simple_repeat	chr17	34905239	34905241	+	ENSMUST00000150786.1,ENSMUSG00000013787.15	Ehmt2	ENSMUSG00000013787.15	ENSMUST00000150786.1	protein_coding	chr17:34905240-34906040
chr17	34951201	34951306	+	B2_Mm2	SINE	B2	chr17	34951243	34951245	-	ENSMUST00000174464.1,ENSMUSG00000092203.7	1110038B12Rik	ENSMUSG00000092203.7	ENSMUST00000174464.1	processed_transcript	chr17:34950238-34951244
chr17	35172781	35172871	-	PB1	SINE	Alu	chr17	35172818	35172820	-	ENSMUST00000172693.7,ENSMUSG00000024397.14	Aif1	ENSMUSG00000024397.14	ENSMUST00000172693.7	protein_coding	chr17:35170991-35172819
chr17	35175925	35176178	+	LTR33	LTR	ERVL	chr17	35176000	35176002	-	ENSMUST00000173324.7,ENSMUSG00000024397.14	Aif1	ENSMUSG00000024397.14	ENSMUST00000173324.7	protein_coding	chr17:35170992-35176001
chr17	35175925	35176178	+	LTR33	LTR	ERVL	chr17	35176067	35176069	-	ENSMUST00000172679.1,ENSMUSG00000024397.14	Aif1	ENSMUSG00000024397.14	ENSMUST00000172679.1	protein_coding	chr17:35170996-35176068
chr17	35175925	35176178	+	LTR33	LTR	ERVL	chr17	35176000	35176002	-	ENSMUST00000174044.1,ENSMUSG00000024397.14	Aif1	ENSMUSG00000024397.14	ENSMUST00000174044.1	protein_coding	chr17:35172530-35176001
chr17	35221573	35221759	-	B2_Mm2	SINE	B2	chr17	35221656	35221658	-	ENSMUST00000176748.1,ENSMUSG00000042419.8	Nfkbil1	ENSMUSG00000042419.8	ENSMUST00000176748.1	protein_coding	chr17:35220836-35221657
chr17	35279355	35279505	+	Charlie4z	DNA	hAT-Charlie	chr17	35279413	35279415	-	ENSMUST00000173950.1,ENSMUSG00000092444.1	Gm18733	ENSMUSG00000092444.1	ENSMUST00000173950.1	transcribed_unprocessed_pseudogene	chr17:35278559-35279414
chr17	35442040	35442220	-	B2_Mm1t	SINE	B2	chr17	35442187	35442189	+	ENSMUST00000173016.1,ENSMUSG00000060550.16	H2-Q7	ENSMUSG00000060550.16	ENSMUST00000173016.1	protein_coding	chr17:35442188-35443769
chr17	35445221	35445863	-	RMER19B	LTR	ERVK	chr17	35445855	35445857	+	ENSMUST00000173427.1,ENSMUSG00000092278.1	Gm8752	ENSMUSG00000092278.1	ENSMUST00000173427.1	processed_pseudogene	chr17:35445856-35448926
chr17	35601391	35601582	+	MTD	LTR	ERVL-MaLR	chr17	35601548	35601550	+	ENSMUST00000174521.1,ENSMUSG00000090509.2	Sfta2	ENSMUSG00000090509.2	ENSMUST00000174521.1	protein_coding	chr17:35601549-35650567
chr17	35601391	35601582	+	MTD	LTR	ERVL-MaLR	chr17	35601577	35601579	+	ENSMUST00000174534.1,ENSMUSG00000090509.2	Sfta2	ENSMUSG00000090509.2	ENSMUST00000174534.1	protein_coding	chr17:35601578-35650565
chr17	35651624	35652019	+	MTA_Mm	LTR	ERVL-MaLR	chr17	35651827	35651829	+	ENSMUST00000173162.2,ENSMUSG00000092389.2	Gm20483	ENSMUSG00000092389.2	ENSMUST00000173162.2	antisense	chr17:35651828-35660367
chr17	35668685	35668846	+	B2_Mm1t	SINE	B2	chr17	35668759	35668761	-	ENSMUST00000162927.1,ENSMUSG00000001524.14	Gtf2h4	ENSMUSG00000001524.14	ENSMUST00000162927.1	protein_coding	chr17:35667738-35668760
chr17	35699203	35699309	-	U6	snRNA	snRNA	chr17	35699308	35699310	-	ENSMUST00000177607.1,ENSMUSG00000093921.1	Gm23864	ENSMUSG00000093921.1	ENSMUST00000177607.1	snRNA	chr17:35699203-35699309
chr17	35887668	35887815	+	(TG)n	Simple_repeat	Simple_repeat	chr17	35887678	35887680	+	ENSMUST00000172730.7,ENSMUSG00000024422.14	Dhx16	ENSMUSG00000024422.14	ENSMUST00000172730.7	protein_coding	chr17:35887679-35889594
chr17	35890605	35890751	-	B4	SINE	B4	chr17	35890732	35890734	+	ENSMUST00000174308.1,ENSMUSG00000024422.14	Dhx16	ENSMUSG00000024422.14	ENSMUST00000174308.1	protein_coding	chr17:35890733-35892553
chr17	35896563	35896632	+	MIRc	SINE	MIR	chr17	35896607	35896609	-	ENSMUST00000151274.1,ENSMUSG00000050705.15	2310061I04Rik	ENSMUSG00000050705.15	ENSMUST00000151274.1	protein_coding	chr17:35895771-35896608
chr17	35897103	35897158	+	GC_rich	Low_complexity	Low_complexity	chr17	35897119	35897121	-	ENSMUST00000148482.7,ENSMUSG00000050705.15	2310061I04Rik	ENSMUSG00000050705.15	ENSMUST00000148482.7	protein_coding	chr17:35892677-35897120
chr17	35897103	35897158	+	GC_rich	Low_complexity	Low_complexity	chr17	35897110	35897112	-	ENSMUST00000146451.7,ENSMUSG00000050705.15	2310061I04Rik	ENSMUSG00000050705.15	ENSMUST00000146451.7	protein_coding	chr17:35892687-35897111
chr17	35897103	35897158	+	GC_rich	Low_complexity	Low_complexity	chr17	35897102	35897104	-	ENSMUST00000156817.1,ENSMUSG00000050705.15	2310061I04Rik	ENSMUSG00000050705.15	ENSMUST00000156817.1	protein_coding	chr17:35895920-35897103
chr17	35912485	35912574	+	4.5SRNA	scRNA	scRNA	chr17	35912565	35912567	-	ENSMUST00000173737.1,ENSMUSG00000024436.16	Mrps18b	ENSMUSG00000024436.16	ENSMUST00000173737.1	protein_coding	chr17:35910503-35912566
chr17	35947176	35947249	-	B2_Mm1a	SINE	B2	chr17	35947245	35947247	+	ENSMUST00000173255.1,ENSMUSG00000092284.1	Gm8801	ENSMUSG00000092284.1	ENSMUST00000173255.1	unprocessed_pseudogene	chr17:35947246-35952297
chr17	35958417	35958536	-	PB1D7	SINE	Alu	chr17	35958485	35958487	-	ENSMUST00000173111.1,ENSMUSG00000038762.15	Abcf1	ENSMUSG00000038762.15	ENSMUST00000173111.1	protein_coding	chr17:35957287-35958486
chr17	35958438	35958547	-	MT2B	LTR	ERVL	chr17	35958485	35958487	-	ENSMUST00000173111.1,ENSMUSG00000038762.15	Abcf1	ENSMUSG00000038762.15	ENSMUST00000173111.1	protein_coding	chr17:35957287-35958486
chr17	35991775	35991911	-	B4A	SINE	B4	chr17	35991866	35991868	+	ENSMUST00000172480.1,ENSMUSG00000092604.1	Gm20508	ENSMUSG00000092604.1	ENSMUST00000172480.1	lincRNA	chr17:35991867-35993738
chr17	35994355	35994457	+	ORR1E	LTR	ERVL-MaLR	chr17	35994452	35994454	+	ENSMUST00000173900.1,ENSMUSG00000092368.1	A930015D03Rik	ENSMUSG00000092368.1	ENSMUST00000173900.1	antisense	chr17:35994453-36038435
chr17	36042507	36042845	-	RLTR34D_MM	LTR	ERVK	chr17	36042689	36042691	-	ENSMUST00000058801.14,ENSMUSG00000056116.18	H2-T22	ENSMUSG00000056116.18	ENSMUST00000058801.14	protein_coding	chr17:36038407-36042690
chr17	36042507	36042845	-	RLTR34D_MM	LTR	ERVK	chr17	36042682	36042684	-	ENSMUST00000173280.1,ENSMUSG00000056116.18	H2-T22	ENSMUSG00000056116.18	ENSMUST00000173280.1	protein_coding	chr17:36038409-36042683
chr17	36042507	36042845	-	RLTR34D_MM	LTR	ERVK	chr17	36042704	36042706	-	ENSMUST00000080015.11,ENSMUSG00000056116.18	H2-T22	ENSMUSG00000056116.18	ENSMUST00000080015.11	protein_coding	chr17:36038409-36042705
chr17	36042507	36042845	-	RLTR34D_MM	LTR	ERVK	chr17	36042746	36042748	-	ENSMUST00000077960.6,ENSMUSG00000056116.18	H2-T22	ENSMUSG00000056116.18	ENSMUST00000077960.6	protein_coding	chr17:36038409-36042747
chr17	36121230	36121562	-	RLTR34D_MM	LTR	ERVK	chr17	36121434	36121436	-	ENSMUST00000174625.7,ENSMUSG00000079491.9	H2-T10	ENSMUSG00000079491.9	ENSMUST00000174625.7	polymorphic_pseudogene	chr17:36115876-36121435
chr17	36121230	36121562	-	RLTR34D_MM	LTR	ERVK	chr17	36121464	36121466	-	ENSMUST00000174382.7,ENSMUSG00000079491.9	H2-T10	ENSMUSG00000079491.9	ENSMUST00000174382.7	polymorphic_pseudogene	chr17:36117090-36121465
chr17	36241878	36242106	-	7SK	RNA	RNA	chr17	36242105	36242107	-	ENSMUST00000122801.1,ENSMUSG00000084750.1	Gm22453	ENSMUSG00000084750.1	ENSMUST00000122801.1	misc_RNA	chr17:36241789-36242106
chr17	36272020	36272580	-	MT2B2	LTR	ERVL	chr17	36272246	36272248	-	ENSMUST00000172832.1,ENSMUSG00000045409.16	Trim39	ENSMUSG00000045409.16	ENSMUST00000172832.1	protein_coding	chr17:36262607-36272247
chr17	36656730	36657066	+	ORR1A4	LTR	ERVL-MaLR	chr17	36657055	36657057	+	ENSMUST00000174221.1,ENSMUSG00000092485.1	Rpl9-ps5	ENSMUSG00000092485.1	ENSMUST00000174221.1	processed_pseudogene	chr17:36657056-36657626
chr17	36842332	36842518	+	ID_B1	SINE	B4	chr17	36842351	36842353	-	ENSMUST00000083717.1,ENSMUSG00000065651.1	Gm25973	ENSMUSG00000065651.1	ENSMUST00000083717.1	snoRNA	chr17:36842226-36842352
chr17	37003663	37003684	+	(T)n	Simple_repeat	Simple_repeat	chr17	37003665	37003667	+	ENSMUST00000174672.1,ENSMUSG00000036036.15	Zfp57	ENSMUSG00000036036.15	ENSMUST00000174672.1	protein_coding	chr17:37003666-37010632
chr17	37015310	37015515	+	7SK	RNA	RNA	chr17	37015342	37015344	+	ENSMUST00000158194.1,ENSMUSG00000088819.1	Gm22388	ENSMUSG00000088819.1	ENSMUST00000158194.1	misc_RNA	chr17:37015343-37015590
chr17	37045950	37046090	+	C-rich	Low_complexity	Low_complexity	chr17	37045965	37045967	+	ENSMUST00000025338.15,ENSMUSG00000024462.17	Gabbr1	ENSMUSG00000024462.17	ENSMUST00000025338.15	protein_coding	chr17:37045966-37075067
chr17	37045950	37046090	+	C-rich	Low_complexity	Low_complexity	chr17	37046019	37046021	+	ENSMUST00000173823.7,ENSMUSG00000024462.17	Gabbr1	ENSMUSG00000024462.17	ENSMUST00000173823.7	protein_coding	chr17:37046020-37074290
chr17	37045950	37046090	+	C-rich	Low_complexity	Low_complexity	chr17	37046027	37046029	+	ENSMUST00000174456.7,ENSMUSG00000024462.17	Gabbr1	ENSMUSG00000024462.17	ENSMUST00000174456.7	protein_coding	chr17:37046028-37049467
chr17	37213101	37213132	+	X8_LINE	LINE	CR1	chr17	37213117	37213119	-	ENSMUST00000216318.1,ENSMUSG00000049561.9	Olfr95	ENSMUSG00000049561.9	ENSMUST00000216318.1	protein_coding	chr17:37207954-37213118
chr17	37267162	37267238	-	U4	snRNA	snRNA	chr17	37267237	37267239	-	ENSMUST00000122476.1,ENSMUSG00000084425.1	Gm25104	ENSMUSG00000084425.1	ENSMUST00000122476.1	snRNA	chr17:37267076-37267238
chr17	37408529	37408624	-	Lx10	LINE	L1	chr17	37408532	37408534	-	ENSMUST00000174238.2,ENSMUSG00000092568.2	Olfr759-ps1	ENSMUSG00000092568.2	ENSMUST00000174238.2	unprocessed_pseudogene	chr17:37407834-37408533
chr17	37452087	37452522	-	Lx10	LINE	L1	chr17	37452229	37452231	-	ENSMUST00000172563.2,ENSMUSG00000092601.2	Olfr760-ps1	ENSMUSG00000092601.2	ENSMUST00000172563.2	unprocessed_pseudogene	chr17:37451433-37452230
chr17	37507727	37509797	-	RodERV21-int	LTR	ERV1	chr17	37508029	37508031	+	ENSMUST00000214259.1,ENSMUSG00000090675.2	Olfr111	ENSMUSG00000090675.2	ENSMUST00000214259.1	protein_coding	chr17:37508030-37532449
chr17	37569235	37569807	-	Lx5	LINE	L1	chr17	37569448	37569450	-	ENSMUST00000208832.1,ENSMUSG00000051611.9	Olfr112	ENSMUSG00000051611.9	ENSMUST00000208832.1	protein_coding	chr17:37563239-37569449
chr17	37569235	37569807	-	Lx5	LINE	L1	chr17	37569450	37569452	-	ENSMUST00000174798.2,ENSMUSG00000051611.9	Olfr112	ENSMUSG00000051611.9	ENSMUST00000174798.2	protein_coding	chr17:37563410-37569451
chr17	37609502	37609543	+	(TC)n	Simple_repeat	Simple_repeat	chr17	37609508	37609510	-	ENSMUST00000207850.1,ENSMUSG00000109188.1	Gm18213	ENSMUSG00000109188.1	ENSMUST00000207850.1	unprocessed_pseudogene	chr17:37608886-37609509
chr17	37667675	37668159	+	MT2_Mm	LTR	ERVL	chr17	37667767	37667769	+	ENSMUST00000216551.1,ENSMUSG00000080990.2	Olfr118	ENSMUSG00000080990.2	ENSMUST00000216551.1	protein_coding	chr17:37667768-37673476
chr17	37771254	37771528	+	B4A	SINE	B4	chr17	37771298	37771300	+	ENSMUST00000217119.1,ENSMUSG00000083947.5	Olfr122	ENSMUSG00000083947.5	ENSMUST00000217119.1	protein_coding	chr17:37771299-37773749
chr17	37842929	37842971	+	L1M2	LINE	L1	chr17	37842928	37842930	-	ENSMUST00000174655.1,ENSMUSG00000092269.1	Gm9577	ENSMUSG00000092269.1	ENSMUST00000174655.1	processed_pseudogene	chr17:37840310-37842929
chr17	37886026	37886500	-	RMER20B	LTR	ERVK	chr17	37886030	37886032	-	ENSMUST00000174783.1,ENSMUSG00000092468.1	Gm18520	ENSMUSG00000092468.1	ENSMUST00000174783.1	processed_pseudogene	chr17:37885374-37886031
chr17	37920496	37920567	+	(GA)n	Simple_repeat	Simple_repeat	chr17	37920547	37920549	+	ENSMUST00000216440.1,ENSMUSG00000059030.5	Olfr128	ENSMUSG00000059030.5	ENSMUST00000216440.1	protein_coding	chr17:37920548-37926801
chr17	37923450	37923519	+	(TA)n	Simple_repeat	Simple_repeat	chr17	37923505	37923507	+	ENSMUST00000080231.4,ENSMUSG00000059030.5	Olfr128	ENSMUSG00000059030.5	ENSMUST00000080231.4	protein_coding	chr17:37923506-37924555
chr17	37940621	37941018	-	MurSatRep1	Unknown	Unknown	chr17	37940787	37940789	-	ENSMUST00000174200.1,ENSMUSG00000092295.1	Gm20543	ENSMUSG00000092295.1	ENSMUST00000174200.1	processed_pseudogene	chr17:37937366-37940788
chr17	37943391	37943679	-	ORR1A4-int	LTR	ERVL-MaLR	chr17	37943390	37943392	-	ENSMUST00000174582.1,ENSMUSG00000092513.1	Gm20542	ENSMUSG00000092513.1	ENSMUST00000174582.1	processed_pseudogene	chr17:37943020-37943391
chr17	38009415	38011150	+	MurSatRep1	Unknown	Unknown	chr17	38009646	38009648	+	ENSMUST00000173035.1,ENSMUSG00000092390.1	Gm20541	ENSMUSG00000092390.1	ENSMUST00000173035.1	unprocessed_pseudogene	chr17:38009647-38012396
chr17	38079544	38079626	-	PB1D9	SINE	Alu	chr17	38079619	38079621	+	ENSMUST00000173218.1,ENSMUSG00000092461.1	Gm18833	ENSMUSG00000092461.1	ENSMUST00000173218.1	processed_pseudogene	chr17:38079620-38080481
chr17	38133955	38134911	-	RMER19B	LTR	ERVK	chr17	38134525	38134527	-	ENSMUST00000216804.1,ENSMUSG00000067186.2	Olfr132	ENSMUSG00000067186.2	ENSMUST00000216804.1	protein_coding	chr17:38129863-38134526
chr17	38133955	38134911	-	RMER19B	LTR	ERVK	chr17	38134525	38134527	-	ENSMUST00000217361.1,ENSMUSG00000067186.2	Olfr132	ENSMUSG00000067186.2	ENSMUST00000217361.1	protein_coding	chr17:38129866-38134526
chr17	38876898	38876929	+	AT_rich	Low_complexity	Low_complexity	chr17	38876926	38876928	+	ENSMUST00000233365.1,ENSMUSG00000117043.1	AC161261.2	ENSMUSG00000117043.1	ENSMUST00000233365.1	processed_pseudogene	chr17:38876927-38877070
chr17	39036361	39036880	+	MT2_Mm	LTR	ERVL	chr17	39036694	39036696	+	ENSMUST00000232955.1,ENSMUSG00000095625.2	Esp24	ENSMUSG00000095625.2	ENSMUST00000232955.1	protein_coding	chr17:39036695-39040227
chr17	39460126	39460643	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr17	39460438	39460440	-	ENSMUST00000104829.1,ENSMUSG00000095880.1	Gm26429	ENSMUSG00000095880.1	ENSMUST00000104829.1	miRNA	chr17:39460330-39460439
chr17	39842997	39843163	+	FordPrefect	DNA	hAT-Tip100	chr17	39843012	39843014	+	ENSMUST00000192833.1,ENSMUSG00000097971.3	Gm26917	ENSMUSG00000097971.3	ENSMUST00000192833.1	lincRNA	chr17:39843013-39846341
chr17	39846352	39848201	+	SSU-rRNA_Hsa	rRNA	rRNA	chr17	39848200	39848202	-	ENSMUST00000198477.1,ENSMUSG00000106106.2	CT010467.1	ENSMUSG00000106106.2	ENSMUST00000198477.1	rRNA	chr17:39846353-39848201
chr17	39846352	39848201	+	SSU-rRNA_Hsa	rRNA	rRNA	chr17	39846957	39846959	+	ENSMUST00000182010.1,ENSMUSG00000098178.1	Gm42418	ENSMUSG00000098178.1	ENSMUST00000182010.1	lincRNA	chr17:39846958-39848788
chr17	39846352	39848201	+	SSU-rRNA_Hsa	rRNA	rRNA	chr17	39848034	39848036	-	ENSMUST00000200021.1,ENSMUSG00000105361.1	AY036118	ENSMUSG00000105361.1	ENSMUST00000200021.1	lincRNA	chr17:39847113-39848035
chr17	39919630	39920518	+	RLTR13D6	LTR	ERVK	chr17	39920515	39920517	+	ENSMUST00000233556.1,ENSMUSG00000117201.1	AC188608.1	ENSMUSG00000117201.1	ENSMUST00000233556.1	processed_pseudogene	chr17:39920516-39920734
chr17	39950084	39951058	+	Lx5	LINE	L1	chr17	39950519	39950521	+	ENSMUST00000232743.1,ENSMUSG00000095886.2	Esp38	ENSMUSG00000095886.2	ENSMUST00000232743.1	protein_coding	chr17:39950520-39955287
chr17	40051698	40052216	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr17	40051903	40051905	+	ENSMUST00000104784.1,ENSMUSG00000095188.1	Gm26376	ENSMUSG00000095188.1	ENSMUST00000104784.1	miRNA	chr17:40051904-40052013
chr17	40186782	40187687	+	RLTR13D6	LTR	ERVK	chr17	40187674	40187676	+	ENSMUST00000232831.1,ENSMUSG00000117307.1	AC192777.3	ENSMUSG00000117307.1	ENSMUST00000232831.1	processed_pseudogene	chr17:40187675-40187893
chr17	40451650	40451865	+	L1_Mus3	LINE	L1	chr17	40451655	40451657	-	ENSMUST00000233671.1,ENSMUSG00000117215.1	AC162805.6	ENSMUSG00000117215.1	ENSMUST00000233671.1	processed_pseudogene	chr17:40451287-40451656
chr17	40524452	40529003	-	L1Md_F2	LINE	L1	chr17	40525058	40525060	-	ENSMUST00000233166.1,ENSMUSG00000117265.1	AC161605.4	ENSMUSG00000117265.1	ENSMUST00000233166.1	TEC	chr17:40520157-40525059
chr17	41658412	41663738	-	MERVL-int	LTR	ERVL	chr17	41663687	41663689	-	ENSMUST00000232972.1,ENSMUSG00000117001.1	AC124237.1	ENSMUSG00000117001.1	ENSMUST00000232972.1	processed_pseudogene	chr17:41662393-41663688
chr17	42799786	42799912	+	B3A	SINE	B2	chr17	42799887	42799889	-	ENSMUST00000233350.1,ENSMUSG00000061665.7	Cd2ap	ENSMUSG00000061665.7	ENSMUST00000233350.1	protein_coding	chr17:42792952-42799888
chr17	42831006	42831141	+	B1_Mm	SINE	Alu	chr17	42831029	42831031	-	ENSMUST00000233626.1,ENSMUSG00000061665.7	Cd2ap	ENSMUSG00000061665.7	ENSMUST00000233626.1	protein_coding	chr17:42825421-42831030
chr17	43454254	43454333	+	U4	snRNA	snRNA	chr17	43454254	43454256	+	ENSMUST00000082648.1,ENSMUSG00000064582.1	Gm25135	ENSMUSG00000064582.1	ENSMUST00000082648.1	snRNA	chr17:43454255-43454397
chr17	43698362	43698538	+	U2	snRNA	snRNA	chr17	43698362	43698364	+	ENSMUST00000122525.1,ENSMUSG00000084474.1	Gm25783	ENSMUSG00000084474.1	ENSMUST00000122525.1	snRNA	chr17:43698363-43698552
chr17	43803759	43804054	-	L2b	LINE	L2	chr17	43804002	43804004	+	ENSMUST00000044895.12,ENSMUSG00000039601.16	Rcan2	ENSMUSG00000039601.16	ENSMUST00000044895.12	protein_coding	chr17:43804003-44039512
chr17	43953081	43953136	+	(TG)n	Simple_repeat	Simple_repeat	chr17	43953114	43953116	+	ENSMUST00000044792.5,ENSMUSG00000039601.16	Rcan2	ENSMUSG00000039601.16	ENSMUST00000044792.5	protein_coding	chr17:43953115-44039516
chr17	44561979	44562109	-	Charlie2a	DNA	hAT-Charlie	chr17	44561989	44561991	+	ENSMUST00000160203.1,ENSMUSG00000090048.1	Runx2os3	ENSMUSG00000090048.1	ENSMUST00000160203.1	antisense	chr17:44561990-44563172
chr17	44735663	44735768	+	G-rich	Low_complexity	Low_complexity	chr17	44735709	44735711	-	ENSMUST00000162878.7,ENSMUSG00000039153.16	Runx2	ENSMUSG00000039153.16	ENSMUST00000162878.7	protein_coding	chr17:44606260-44735710
chr17	44814756	44814864	+	C-rich	Low_complexity	Low_complexity	chr17	44814796	44814798	-	ENSMUST00000113571.9,ENSMUSG00000039153.16	Runx2	ENSMUSG00000039153.16	ENSMUST00000113571.9	protein_coding	chr17:44604001-44814797
chr17	44814756	44814864	+	C-rich	Low_complexity	Low_complexity	chr17	44814796	44814798	-	ENSMUST00000113568.7,ENSMUSG00000039153.16	Runx2	ENSMUSG00000039153.16	ENSMUST00000113568.7	protein_coding	chr17:44608001-44814797
chr17	45147210	45147564	+	MTE2b	LTR	ERVL-MaLR	chr17	45147236	45147238	+	ENSMUST00000233532.1,ENSMUSG00000117044.1	AC164546.1	ENSMUSG00000117044.1	ENSMUST00000233532.1	lincRNA	chr17:45147237-45151629
chr17	45209946	45210094	-	B1_Mus1	SINE	Alu	chr17	45209965	45209967	+	ENSMUST00000178626.1,ENSMUSG00000096425.1	Gm24979	ENSMUSG00000096425.1	ENSMUST00000178626.1	miRNA	chr17:45209966-45210091
chr17	45563944	45563968	+	(GCTG)n	Simple_repeat	Simple_repeat	chr17	45563947	45563949	+	ENSMUST00000225226.1,ENSMUSG00000037089.11	Slc35b2	ENSMUSG00000037089.11	ENSMUST00000225226.1	protein_coding	chr17:45563948-45564819
chr17	45563944	45563968	+	(GCTG)n	Simple_repeat	Simple_repeat	chr17	45563959	45563961	+	ENSMUST00000226086.1,ENSMUSG00000037089.11	Slc35b2	ENSMUSG00000037089.11	ENSMUST00000226086.1	protein_coding	chr17:45563960-45566055
chr17	45563944	45563968	+	(GCTG)n	Simple_repeat	Simple_repeat	chr17	45563963	45563965	+	ENSMUST00000224559.1,ENSMUSG00000037089.11	Slc35b2	ENSMUSG00000037089.11	ENSMUST00000224559.1	protein_coding	chr17:45563964-45567669
chr17	45563944	45563968	+	(GCTG)n	Simple_repeat	Simple_repeat	chr17	45563963	45563965	+	ENSMUST00000041353.6,ENSMUSG00000037089.11	Slc35b2	ENSMUSG00000037089.11	ENSMUST00000041353.6	protein_coding	chr17:45563964-45567669
chr17	45588628	45588825	-	ID_B1	SINE	B4	chr17	45588740	45588742	-	ENSMUST00000171978.1,ENSMUSG00000023942.15	Slc29a1	ENSMUSG00000023942.15	ENSMUST00000171978.1	protein_coding	chr17:45586218-45588741
chr17	45620645	45620757	+	U6	snRNA	snRNA	chr17	45620678	45620680	+	ENSMUST00000083809.1,ENSMUSG00000065743.1	Gm25008	ENSMUSG00000065743.1	ENSMUST00000083809.1	snRNA	chr17:45620679-45620759
chr17	45881297	45881497	-	URR1A	DNA	hAT-Charlie	chr17	45881451	45881453	-	ENSMUST00000233801.1,ENSMUSG00000117085.1	AC127690.3	ENSMUSG00000117085.1	ENSMUST00000233801.1	lincRNA	chr17:45879850-45881452
chr17	46161069	46161140	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	46161110	46161112	+	ENSMUST00000166563.1,ENSMUSG00000023952.13	Gtpbp2	ENSMUSG00000023952.13	ENSMUST00000166563.1	protein_coding	chr17:46161111-46164307
chr17	46195417	46195564	+	B1_Mus1	SINE	Alu	chr17	46195488	46195490	-	ENSMUST00000233924.1,ENSMUSG00000023953.9	Polh	ENSMUSG00000023953.9	ENSMUST00000233924.1	protein_coding	chr17:46192563-46195489
chr17	46231226	46231544	-	L1ME3A	LINE	L1	chr17	46231530	46231532	+	ENSMUST00000102187.1,ENSMUSG00000076141.1	Mir693	ENSMUSG00000076141.1	ENSMUST00000102187.1	miRNA	chr17:46231531-46231619
chr17	46232724	46232831	-	U6	snRNA	snRNA	chr17	46232830	46232832	-	ENSMUST00000179407.1,ENSMUSG00000095740.1	Gm22474	ENSMUSG00000095740.1	ENSMUST00000179407.1	snRNA	chr17:46232725-46232831
chr17	46254088	46254244	+	C-rich	Low_complexity	Low_complexity	chr17	46254165	46254167	+	ENSMUST00000233543.1,ENSMUSG00000071073.5	Lrrc73	ENSMUSG00000071073.5	ENSMUST00000233543.1	protein_coding	chr17:46254166-46257210
chr17	46254088	46254244	+	C-rich	Low_complexity	Low_complexity	chr17	46254189	46254191	+	ENSMUST00000095262.5,ENSMUSG00000071073.5	Lrrc73	ENSMUSG00000071073.5	ENSMUST00000095262.5	protein_coding	chr17:46254190-46257308
chr17	46254176	46254335	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr17	46254189	46254191	+	ENSMUST00000095262.5,ENSMUSG00000071073.5	Lrrc73	ENSMUSG00000071073.5	ENSMUST00000095262.5	protein_coding	chr17:46254190-46257308
chr17	46263861	46263989	+	RSINE1	SINE	B4	chr17	46263957	46263959	-	ENSMUST00000224696.1,ENSMUSG00000012296.16	Tjap1	ENSMUSG00000012296.16	ENSMUST00000224696.1	protein_coding	chr17:46261972-46263958
chr17	46273472	46273487	+	B4	SINE	B4	chr17	46273478	46273480	+	ENSMUST00000181775.1,ENSMUSG00000097390.1	Gm26785	ENSMUSG00000097390.1	ENSMUST00000181775.1	lincRNA	chr17:46273479-46280060
chr17	46325676	46325862	+	B3A	SINE	B2	chr17	46325765	46325767	-	ENSMUST00000095261.9,ENSMUSG00000032842.13	Abcc10	ENSMUSG00000032842.13	ENSMUST00000095261.9	protein_coding	chr17:46303421-46325766
chr17	46383709	46383801	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	46383730	46383732	+	ENSMUST00000113481.8,ENSMUSG00000015597.17	Zfp318	ENSMUSG00000015597.17	ENSMUST00000113481.8	protein_coding	chr17:46383731-46420024
chr17	46383709	46383801	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	46383750	46383752	+	ENSMUST00000138127.7,ENSMUSG00000015597.17	Zfp318	ENSMUSG00000015597.17	ENSMUST00000138127.7	protein_coding	chr17:46383751-46420920
chr17	46403874	46404198	+	7SK	RNA	RNA	chr17	46403874	46403876	+	ENSMUST00000083874.1,ENSMUSG00000065808.1	Gm23037	ENSMUSG00000065808.1	ENSMUST00000083874.1	misc_RNA	chr17:46403875-46404198
chr17	46471465	46471673	-	B3	SINE	B2	chr17	46471500	46471502	+	ENSMUST00000181301.1,ENSMUSG00000097560.1	Gm26904	ENSMUSG00000097560.1	ENSMUST00000181301.1	lincRNA	chr17:46471501-46825221
chr17	46572901	46572986	-	L1Md_T	LINE	L1	chr17	46572949	46572951	-	ENSMUST00000232855.1,ENSMUSG00000023972.10	Ptk7	ENSMUSG00000023972.10	ENSMUST00000232855.1	protein_coding	chr17:46564471-46572950
chr17	46737585	46737649	+	B1_Mur2	SINE	Alu	chr17	46737626	46737628	-	ENSMUST00000145877.1,ENSMUSG00000023973.13	Cnpy3	ENSMUSG00000023973.13	ENSMUST00000145877.1	protein_coding	chr17:46736653-46737627
chr17	46812105	46812256	-	B1_Mur1	SINE	Alu	chr17	46812184	46812186	-	ENSMUST00000233142.1,ENSMUSG00000036568.7	Bicral	ENSMUSG00000036568.7	ENSMUST00000233142.1	protein_coding	chr17:46807273-46812185
chr17	46831287	46831430	+	ID_B1	SINE	B4	chr17	46831412	46831414	-	ENSMUST00000040624.6,ENSMUSG00000036568.7	Bicral	ENSMUSG00000036568.7	ENSMUST00000040624.6	protein_coding	chr17:46798120-46831413
chr17	46932719	46933399	+	RMER6A	LTR	ERVK	chr17	46933074	46933076	-	ENSMUST00000224442.1,ENSMUSG00000023977.15	Ubr2	ENSMUSG00000023977.15	ENSMUST00000224442.1	protein_coding	chr17:46930243-46933075
chr17	46941381	46941467	+	PB1D9	SINE	Alu	chr17	46941410	46941412	-	ENSMUST00000225712.1,ENSMUSG00000023977.15	Ubr2	ENSMUSG00000023977.15	ENSMUST00000225712.1	protein_coding	chr17:46940957-46941411
chr17	46945246	46945391	-	B1_Mus1	SINE	Alu	chr17	46945368	46945370	-	ENSMUST00000223860.1,ENSMUSG00000023977.15	Ubr2	ENSMUSG00000023977.15	ENSMUST00000223860.1	protein_coding	chr17:46941104-46945369
chr17	46952095	46952281	+	B3	SINE	B2	chr17	46952154	46952156	-	ENSMUST00000225751.1,ENSMUSG00000023977.15	Ubr2	ENSMUSG00000023977.15	ENSMUST00000225751.1	protein_coding	chr17:46951775-46952155
chr17	46992691	46992916	-	7SK	RNA	RNA	chr17	46992915	46992917	-	ENSMUST00000122623.1,ENSMUSG00000084572.1	Gm23657	ENSMUSG00000084572.1	ENSMUST00000122623.1	misc_RNA	chr17:46992623-46992916
chr17	47290952	47291042	+	5S	rRNA	rRNA	chr17	47290955	47290957	+	ENSMUST00000158583.1,ENSMUSG00000089208.1	Gm26216	ENSMUSG00000089208.1	ENSMUST00000158583.1	rRNA	chr17:47290956-47291028
chr17	47687576	47687714	-	RSINE1	SINE	B4	chr17	47687609	47687611	+	ENSMUST00000155812.1,ENSMUSG00000084880.1	Tomm6os	ENSMUSG00000084880.1	ENSMUST00000155812.1	antisense	chr17:47687610-47691083
chr17	47695161	47695298	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	47695197	47695199	+	ENSMUST00000113296.7,ENSMUSG00000023266.11	Frs3	ENSMUSG00000023266.11	ENSMUST00000113296.7	protein_coding	chr17:47695198-47704286
chr17	47695161	47695298	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	47695224	47695226	+	ENSMUST00000128734.2,ENSMUSG00000023266.11	Frs3	ENSMUSG00000023266.11	ENSMUST00000128734.2	protein_coding	chr17:47695225-47697670
chr17	47787548	47787672	+	B4	SINE	B4	chr17	47787567	47787569	+	ENSMUST00000124765.7,ENSMUSG00000023990.18	Tfeb	ENSMUSG00000023990.18	ENSMUST00000124765.7	protein_coding	chr17:47787568-47789716
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833240	47833242	-	ENSMUST00000113280.7,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000113280.7	protein_coding	chr17:47815328-47833241
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833290	47833292	-	ENSMUST00000035375.13,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000035375.13	protein_coding	chr17:47815336-47833291
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833257	47833259	-	ENSMUST00000125745.7,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000125745.7	protein_coding	chr17:47815921-47833258
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833260	47833262	-	ENSMUST00000140234.1,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000140234.1	protein_coding	chr17:47819798-47833261
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833271	47833273	-	ENSMUST00000152455.7,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000152455.7	protein_coding	chr17:47820837-47833272
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833244	47833246	-	ENSMUST00000132125.7,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000132125.7	protein_coding	chr17:47820926-47833245
chr17	47833181	47833365	+	C-rich	Low_complexity	Low_complexity	chr17	47833229	47833231	-	ENSMUST00000129360.1,ENSMUSG00000032717.14	Mdfi	ENSMUSG00000032717.14	ENSMUST00000129360.1	protein_coding	chr17:47824599-47833230
chr17	47848833	47848952	+	5S	rRNA	rRNA	chr17	47848833	47848835	+	ENSMUST00000082814.1,ENSMUSG00000064748.1	n-R5s28	ENSMUSG00000064748.1	ENSMUST00000082814.1	rRNA	chr17:47848834-47848952
chr17	47878943	47878985	+	(CACG)n	Simple_repeat	Simple_repeat	chr17	47878952	47878954	-	ENSMUST00000154108.1,ENSMUSG00000023991.16	Foxp4	ENSMUSG00000023991.16	ENSMUST00000154108.1	protein_coding	chr17:47878480-47878953
chr17	48089228	48089460	+	MLT1C	LTR	ERVL-MaLR	chr17	48089318	48089320	+	ENSMUST00000022028.5,ENSMUSG00000021545.5	1700067P10Rik	ENSMUSG00000021545.5	ENSMUST00000022028.5	protein_coding	chr17:48089319-48090918
chr17	48092667	48092844	+	B3	SINE	B2	chr17	48092778	48092780	+	ENSMUST00000233338.1,ENSMUSG00000117157.1	CAAA01189291.1	ENSMUSG00000117157.1	ENSMUST00000233338.1	lincRNA	chr17:48092779-48095632
chr17	48409702	48409732	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	48409729	48409731	-	ENSMUST00000160319.7,ENSMUSG00000023994.13	Nfya	ENSMUSG00000023994.13	ENSMUST00000160319.7	protein_coding	chr17:48389081-48409730
chr17	48692685	48692733	-	7SK	RNA	RNA	chr17	48692706	48692708	-	ENSMUST00000157858.1,ENSMUSG00000088483.1	Gm23642	ENSMUSG00000088483.1	ENSMUST00000157858.1	misc_RNA	chr17:48692450-48692707
chr17	48738637	48738877	-	MIRb	SINE	MIR	chr17	48738745	48738747	-	ENSMUST00000209681.1,ENSMUSG00000110276.1	Gm45330	ENSMUSG00000110276.1	ENSMUST00000209681.1	lincRNA	chr17:48730399-48738746
chr17	48932361	48932392	+	(CA)n	Simple_repeat	Simple_repeat	chr17	48932378	48932380	+	ENSMUST00000046254.2,ENSMUSG00000040490.4	Lrfn2	ENSMUSG00000040490.4	ENSMUST00000046254.2	protein_coding	chr17:48932379-49097588
chr17	49292604	49292742	+	Lx8	LINE	L1	chr17	49292741	49292743	+	ENSMUST00000082607.1,ENSMUSG00000064541.1	Gm22978	ENSMUSG00000064541.1	ENSMUST00000082607.1	snRNA	chr17:49292742-49292901
chr17	49292742	49292902	+	U1	snRNA	snRNA	chr17	49292741	49292743	+	ENSMUST00000082607.1,ENSMUSG00000064541.1	Gm22978	ENSMUSG00000064541.1	ENSMUST00000082607.1	snRNA	chr17:49292742-49292901
chr17	49312058	49312439	-	MTC	LTR	ERVL-MaLR	chr17	49312240	49312242	-	ENSMUST00000233890.1,ENSMUSG00000117221.1	AC104866.2	ENSMUSG00000117221.1	ENSMUST00000233890.1	lincRNA	chr17:49307804-49312241
chr17	49564322	49564354	+	GC_rich	Low_complexity	Low_complexity	chr17	49564336	49564338	-	ENSMUST00000224954.1,ENSMUSG00000040260.8	Daam2	ENSMUSG00000040260.8	ENSMUST00000224954.1	protein_coding	chr17:49456022-49564337
chr17	49564322	49564354	+	GC_rich	Low_complexity	Low_complexity	chr17	49564342	49564344	-	ENSMUST00000057610.7,ENSMUSG00000040260.8	Daam2	ENSMUSG00000040260.8	ENSMUST00000057610.7	protein_coding	chr17:49458427-49564343
chr17	49564322	49564354	+	GC_rich	Low_complexity	Low_complexity	chr17	49564336	49564338	-	ENSMUST00000224595.1,ENSMUSG00000040260.8	Daam2	ENSMUSG00000040260.8	ENSMUST00000224595.1	protein_coding	chr17:49480242-49564337
chr17	49821295	49822167	-	RMER19B	LTR	ERVK	chr17	49821824	49821826	-	ENSMUST00000159971.1,ENSMUSG00000090012.1	Gm16555	ENSMUSG00000090012.1	ENSMUST00000159971.1	antisense	chr17:49817626-49821825
chr17	50190495	50190519	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	50190496	50190498	-	ENSMUST00000156094.1,ENSMUSG00000039316.14	Rftn1	ENSMUSG00000039316.14	ENSMUST00000156094.1	protein_coding	chr17:50036623-50190497
chr17	50209946	50210169	-	MLT1K	LTR	ERVL-MaLR	chr17	50210134	50210136	+	ENSMUST00000194498.2,ENSMUSG00000104256.2	Gm37173	ENSMUSG00000104256.2	ENSMUST00000194498.2	lincRNA	chr17:50210135-50219642
chr17	50238963	50239842	+	RMER21B	LTR	ERV1	chr17	50239207	50239209	+	ENSMUST00000180996.1,ENSMUSG00000067103.6	AY702103	ENSMUSG00000067103.6	ENSMUST00000180996.1	lincRNA	chr17:50239208-50246316
chr17	50238963	50239842	+	RMER21B	LTR	ERV1	chr17	50239403	50239405	+	ENSMUST00000086914.5,ENSMUSG00000067103.6	AY702103	ENSMUSG00000067103.6	ENSMUST00000086914.5	lincRNA	chr17:50239404-50241524
chr17	50339146	50340073	-	L2	LINE	L2	chr17	50339251	50339253	+	ENSMUST00000233175.1,ENSMUSG00000117222.1	AC060761.1	ENSMUSG00000117222.1	ENSMUST00000233175.1	lincRNA	chr17:50339252-50398475
chr17	50916971	50917041	-	U4	snRNA	snRNA	chr17	50917040	50917042	-	ENSMUST00000122634.1,ENSMUSG00000084583.1	Gm25177	ENSMUSG00000084583.1	ENSMUST00000122634.1	snRNA	chr17:50916925-50917041
chr17	51159217	51160011	+	RMER1B	Other	Other	chr17	51159377	51159379	-	ENSMUST00000224977.1,ENSMUSG00000023923.10	Tbc1d5	ENSMUSG00000023923.10	ENSMUST00000224977.1	protein_coding	chr17:50733132-51159378
chr17	51179151	51179233	+	(TC)n	Simple_repeat	Simple_repeat	chr17	51179167	51179169	-	ENSMUST00000024717.9,ENSMUSG00000023923.10	Tbc1d5	ENSMUSG00000023923.10	ENSMUST00000024717.9	protein_coding	chr17:50733124-51179168
chr17	54279121	54279500	-	L1_Mus3	LINE	L1	chr17	54279203	54279205	-	ENSMUST00000233507.1,ENSMUSG00000023945.7	Slc5a7	ENSMUSG00000023945.7	ENSMUST00000233507.1	protein_coding	chr17:54273594-54279204
chr17	54369728	54374876	+	L1VL1	LINE	L1	chr17	54370073	54370075	-	ENSMUST00000190635.1,ENSMUSG00000099747.1	1700025K24Rik	ENSMUSG00000099747.1	ENSMUST00000190635.1	lincRNA	chr17:54352583-54370074
chr17	54850596	54852843	-	L1_Mur1	LINE	L1	chr17	54852561	54852563	+	ENSMUST00000233856.1,ENSMUSG00000117132.1	AC154423.1	ENSMUSG00000117132.1	ENSMUST00000233856.1	lincRNA	chr17:54852562-54860472
chr17	55058564	55064517	+	L1_Mus2	LINE	L1	chr17	55063411	55063413	+	ENSMUST00000229170.2,ENSMUSG00000117340.1	AC154343.2	ENSMUSG00000117340.1	ENSMUST00000229170.2	processed_pseudogene	chr17:55063412-55063999
chr17	55551929	55558382	-	L1Md_T	LINE	L1	chr17	55557165	55557167	+	ENSMUST00000181186.1,ENSMUSG00000097095.1	Gm26547	ENSMUSG00000097095.1	ENSMUST00000181186.1	lincRNA	chr17:55557166-55563507
chr17	55661636	55661727	+	U6	snRNA	snRNA	chr17	55661636	55661638	+	ENSMUST00000157874.1,ENSMUSG00000088499.1	Gm22654	ENSMUSG00000088499.1	ENSMUST00000157874.1	snRNA	chr17:55661637-55661741
chr17	55700214	55700423	+	ORR1A2	LTR	ERVL-MaLR	chr17	55700406	55700408	+	ENSMUST00000233377.1,ENSMUSG00000117237.1	AC154443.2	ENSMUSG00000117237.1	ENSMUST00000233377.1	processed_pseudogene	chr17:55700407-55701817
chr17	55949331	55949563	-	RMER19B2	LTR	ERVK	chr17	55949499	55949501	-	ENSMUST00000189452.1,ENSMUSG00000062101.12	Zfp119b	ENSMUSG00000062101.12	ENSMUST00000189452.1	protein_coding	chr17:55938381-55949500
chr17	55975986	55976095	-	RSINE1	SINE	B4	chr17	55976089	55976091	+	ENSMUST00000223841.1,ENSMUSG00000039154.8	Shd	ENSMUSG00000039154.8	ENSMUST00000223841.1	protein_coding	chr17:55976090-55976625
chr17	55998431	55998578	+	B1_Mm	SINE	Alu	chr17	55998479	55998481	-	ENSMUST00000233528.1,ENSMUSG00000038781.7	Stap2	ENSMUSG00000038781.7	ENSMUST00000233528.1	protein_coding	chr17:55997495-55998480
chr17	56009860	56009980	-	ZP3AR	Satellite	Satellite	chr17	56009932	56009934	+	ENSMUST00000140926.1,ENSMUSG00000003199.16	Mpnd	ENSMUSG00000003199.16	ENSMUST00000140926.1	protein_coding	chr17:56009933-56011667
chr17	56072083	56072352	+	ORR1C2	LTR	ERVL-MaLR	chr17	56072231	56072233	-	ENSMUST00000132804.7,ENSMUSG00000019578.11	Ubxn6	ENSMUSG00000019578.11	ENSMUST00000132804.7	protein_coding	chr17:56068250-56072232
chr17	56079886	56079913	+	(CGGG)n	Simple_repeat	Simple_repeat	chr17	56079892	56079894	+	ENSMUST00000224078.1,ENSMUSG00000002833.11	Hdgfl2	ENSMUSG00000002833.11	ENSMUST00000224078.1	protein_coding	chr17:56079893-56082399
chr17	56434625	56434742	+	(CAGAGA)n	Simple_repeat	Simple_repeat	chr17	56434684	56434686	-	ENSMUST00000223691.1,ENSMUSG00000013236.17	Ptprs	ENSMUSG00000013236.17	ENSMUST00000223691.1	protein_coding	chr17:56433999-56434685
chr17	56569331	56569459	-	RSINE1	SINE	B4	chr17	56569433	56569435	-	ENSMUST00000127947.1,ENSMUSG00000042625.16	Safb2	ENSMUSG00000042625.16	ENSMUST00000127947.1	protein_coding	chr17:56567533-56569434
chr17	56609103	56609246	-	B1_Mus1	SINE	Alu	chr17	56609197	56609199	-	ENSMUST00000233103.1,ENSMUSG00000049760.6	2410015M20Rik	ENSMUSG00000049760.6	ENSMUST00000233103.1	protein_coding	chr17:56607620-56609198
chr17	56673341	56673364	+	GC_rich	Low_complexity	Low_complexity	chr17	56673357	56673359	+	ENSMUST00000002445.9,ENSMUSG00000002372.9	Ranbp3	ENSMUSG00000002372.9	ENSMUST00000002445.9	protein_coding	chr17:56673358-56711764
chr17	57219939	57220079	-	RSINE1	SINE	B4	chr17	57219971	57219973	-	ENSMUST00000176457.1,ENSMUSG00000024164.15	C3	ENSMUSG00000024164.15	ENSMUST00000176457.1	protein_coding	chr17:57215788-57219972
chr17	57253083	57253215	-	ID_B1	SINE	B4	chr17	57253110	57253112	+	ENSMUST00000224586.1,ENSMUSG00000019487.11	Trip10	ENSMUSG00000019487.11	ENSMUST00000224586.1	protein_coding	chr17:57253111-57255328
chr17	57260838	57261032	-	B4A	SINE	B4	chr17	57260969	57260971	+	ENSMUST00000224904.1,ENSMUSG00000019487.11	Trip10	ENSMUSG00000019487.11	ENSMUST00000224904.1	protein_coding	chr17:57260970-57262437
chr17	57747564	57747638	+	U4	snRNA	snRNA	chr17	57747564	57747566	+	ENSMUST00000122479.1,ENSMUSG00000084428.1	Gm25102	ENSMUSG00000084428.1	ENSMUST00000122479.1	snRNA	chr17:57747565-57747676
chr17	57756112	57756165	+	(CA)n	Simple_repeat	Simple_repeat	chr17	57756162	57756164	+	ENSMUST00000233666.1,ENSMUSG00000117022.1	CT025622.1	ENSMUSG00000117022.1	ENSMUST00000233666.1	processed_pseudogene	chr17:57756163-57757022
chr17	58582787	58583097	+	RLTR20A2	LTR	ERVK	chr17	58583091	58583093	+	ENSMUST00000233242.1,ENSMUSG00000117188.1	AC107765.1	ENSMUSG00000117188.1	ENSMUST00000233242.1	processed_pseudogene	chr17:58583092-58583635
chr17	58591294	58593614	-	MMERVK9E_I-int	LTR	ERVK	chr17	58593613	58593615	+	ENSMUST00000050706.9,ENSMUSG00000046952.9	Gm5815	ENSMUSG00000046952.9	ENSMUST00000050706.9	processed_pseudogene	chr17:58593614-58594840
chr17	59017225	59017553	-	ORR1C2	LTR	ERVL-MaLR	chr17	59017313	59017315	+	ENSMUST00000167453.1,ENSMUSG00000086594.2	Nudt12os	ENSMUSG00000086594.2	ENSMUST00000167453.1	antisense	chr17:59017314-59024729
chr17	59854598	59855350	-	RMER17A	LTR	ERVK	chr17	59855216	59855218	+	ENSMUST00000233598.1,ENSMUSG00000117191.1	AC154244.1	ENSMUSG00000117191.1	ENSMUST00000233598.1	lincRNA	chr17:59855217-59952886
chr17	60958733	60959650	+	RMER17A2	LTR	ERVK	chr17	60958877	60958879	-	ENSMUST00000233618.1,ENSMUSG00000117036.1	AC125184.1	ENSMUSG00000117036.1	ENSMUST00000233618.1	lincRNA	chr17:60943877-60958878
chr17	62435715	62436294	-	Lx7	LINE	L1	chr17	62436056	62436058	-	ENSMUST00000232942.1,ENSMUSG00000117066.1	AC114006.1	ENSMUSG00000117066.1	ENSMUST00000232942.1	lincRNA	chr17:62384258-62436057
chr17	62881188	62881317	+	G-rich	Low_complexity	Low_complexity	chr17	62881316	62881318	-	ENSMUST00000076840.11,ENSMUSG00000048915.12	Efna5	ENSMUSG00000048915.12	ENSMUST00000076840.11	protein_coding	chr17:62604184-62881317
chr17	63312926	63313098	-	Lx9	LINE	L1	chr17	63312970	63312972	-	ENSMUST00000164605.7,ENSMUSG00000090565.7	4930405O22Rik	ENSMUSG00000090565.7	ENSMUST00000164605.7	sense_intronic	chr17:63305446-63312971
chr17	63312926	63313098	-	Lx9	LINE	L1	chr17	63312972	63312974	-	ENSMUST00000171379.1,ENSMUSG00000090565.7	4930405O22Rik	ENSMUSG00000090565.7	ENSMUST00000171379.1	sense_intronic	chr17:63305679-63312973
chr17	63481174	63481391	+	B3A	SINE	B2	chr17	63481289	63481291	-	ENSMUST00000090318.2,ENSMUSG00000023965.13	Fbxl17	ENSMUSG00000023965.13	ENSMUST00000090318.2	protein_coding	chr17:63384980-63481290
chr17	63624462	63628221	+	L1_Mus1	LINE	L1	chr17	63627953	63627955	-	ENSMUST00000232736.1,ENSMUSG00000117060.1	AC154779.2	ENSMUSG00000117060.1	ENSMUST00000232736.1	processed_pseudogene	chr17:63627617-63627954
chr17	64312990	64313188	+	Charlie7	DNA	hAT-Charlie	chr17	64313030	64313032	-	ENSMUST00000024888.14,ENSMUSG00000024083.16	Pja2	ENSMUSG00000024083.16	ENSMUST00000024888.14	protein_coding	chr17:64281006-64313031
chr17	64312990	64313188	+	Charlie7	DNA	hAT-Charlie	chr17	64313030	64313032	-	ENSMUST00000024889.13,ENSMUSG00000024083.16	Pja2	ENSMUSG00000024083.16	ENSMUST00000024889.13	protein_coding	chr17:64281006-64313031
chr17	64321604	64321664	+	RLTR20C1_MM	LTR	ERVK	chr17	64321614	64321616	-	ENSMUST00000116805.1,ENSMUSG00000080455.1	Gm24194	ENSMUSG00000080455.1	ENSMUST00000116805.1	miRNA	chr17:64321526-64321615
chr17	64331892	64331964	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	64331915	64331917	-	ENSMUST00000172818.7,ENSMUSG00000024083.16	Pja2	ENSMUSG00000024083.16	ENSMUST00000172818.7	protein_coding	chr17:64281005-64331916
chr17	64713375	64713431	+	(T)n	Simple_repeat	Simple_repeat	chr17	64713419	64713421	+	ENSMUST00000169239.1,ENSMUSG00000024085.13	Man2a1	ENSMUSG00000024085.13	ENSMUST00000169239.1	protein_coding	chr17:64713420-64714802
chr17	64766790	64767201	-	RLTR28	LTR	ERVL	chr17	64767110	64767112	+	ENSMUST00000233348.1,ENSMUSG00000117105.1	AC154577.1	ENSMUSG00000117105.1	ENSMUST00000233348.1	lincRNA	chr17:64767111-64767931
chr17	65509348	65509495	-	B1_Mus2	SINE	Alu	chr17	65509367	65509369	+	ENSMUST00000175167.1,ENSMUSG00000092908.1	Gm25731	ENSMUSG00000092908.1	ENSMUST00000175167.1	miRNA	chr17:65509368-65509492
chr17	65509733	65510379	+	RMER19B2	LTR	ERVK	chr17	65510052	65510054	-	ENSMUST00000233738.1,ENSMUSG00000045036.15	Tmem232	ENSMUSG00000045036.15	ENSMUST00000233738.1	protein_coding	chr17:65256005-65510053
chr17	65642026	65642249	-	Lx8	LINE	L1	chr17	65642167	65642169	-	ENSMUST00000050236.6,ENSMUSG00000050612.6	Txndc2	ENSMUSG00000050612.6	ENSMUST00000050236.6	protein_coding	chr17:65637507-65642168
chr17	65783309	65783373	+	GC_rich	Low_complexity	Low_complexity	chr17	65783354	65783356	+	ENSMUST00000073104.10,ENSMUSG00000061950.17	Ppp4r1	ENSMUSG00000061950.17	ENSMUST00000073104.10	protein_coding	chr17:65783355-65841926
chr17	65783309	65783373	+	GC_rich	Low_complexity	Low_complexity	chr17	65783365	65783367	+	ENSMUST00000160664.7,ENSMUSG00000061950.17	Ppp4r1	ENSMUSG00000061950.17	ENSMUST00000160664.7	protein_coding	chr17:65783366-65841922
chr17	65868050	65868170	+	B1F1	SINE	Alu	chr17	65868050	65868052	-	ENSMUST00000233399.1,ENSMUSG00000024096.17	Ralbp1	ENSMUSG00000024096.17	ENSMUST00000233399.1	protein_coding	chr17:65864692-65868051
chr17	65913531	65913699	-	B4	SINE	B4	chr17	65913586	65913588	+	ENSMUST00000233760.1,ENSMUSG00000117229.1	CT025659.1	ENSMUSG00000117229.1	ENSMUST00000233760.1	lincRNA	chr17:65913587-65916394
chr17	66076937	66076989	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	66076981	66076983	-	ENSMUST00000124297.2,ENSMUSG00000034647.15	Ankrd12	ENSMUSG00000034647.15	ENSMUST00000124297.2	protein_coding	chr17:66049786-66076982
chr17	66086093	66086200	+	U6	snRNA	snRNA	chr17	66086093	66086095	+	ENSMUST00000083372.1,ENSMUSG00000094158.1	Gm23264	ENSMUSG00000094158.1	ENSMUST00000083372.1	snRNA	chr17:66086094-66086200
chr17	66101528	66101576	+	GC_rich	Low_complexity	Low_complexity	chr17	66101558	66101560	-	ENSMUST00000143987.8,ENSMUSG00000024099.15	Ndufv2	ENSMUSG00000024099.15	ENSMUST00000143987.8	protein_coding	chr17:66078638-66101559
chr17	66234923	66235075	-	B1_Mm	SINE	Alu	chr17	66234944	66234946	-	ENSMUST00000233452.1,ENSMUSG00000117220.1	CT025671.1	ENSMUSG00000117220.1	ENSMUST00000233452.1	lincRNA	chr17:66232014-66234945
chr17	66378870	66378983	+	L1MEc	LINE	L1	chr17	66378930	66378932	-	ENSMUST00000134139.7,ENSMUSG00000052105.17	Mtcl1	ENSMUSG00000052105.17	ENSMUST00000134139.7	protein_coding	chr17:66347966-66378931
chr17	66714231	66714493	-	RLTR10B	LTR	ERVK	chr17	66714453	66714455	+	ENSMUST00000224424.1,ENSMUSG00000114563.1	1700016K05Rik	ENSMUSG00000114563.1	ENSMUST00000224424.1	antisense	chr17:66714454-66720485
chr17	66824626	66824722	-	MT2C_Mm	LTR	ERVL	chr17	66824627	66824629	-	ENSMUST00000233720.1,ENSMUSG00000117329.1	AC109261.3	ENSMUSG00000117329.1	ENSMUST00000233720.1	processed_pseudogene	chr17:66824490-66824628
chr17	66928324	66932284	+	L1_Mur1	LINE	L1	chr17	66930198	66930200	-	ENSMUST00000233228.1,ENSMUSG00000117332.1	AC109261.4	ENSMUSG00000117332.1	ENSMUST00000233228.1	TEC	chr17:66926825-66930199
chr17	67047983	67048069	-	LTR79	LTR	ERVL	chr17	67047984	67047986	-	ENSMUST00000224862.1,ENSMUSG00000033278.10	Ptprm	ENSMUSG00000033278.10	ENSMUST00000224862.1	protein_coding	chr17:66956991-67047985
chr17	67354040	67354073	+	GC_rich	Low_complexity	Low_complexity	chr17	67354072	67354074	-	ENSMUST00000037974.9,ENSMUSG00000033278.10	Ptprm	ENSMUSG00000033278.10	ENSMUST00000037974.9	protein_coding	chr17:66666947-67354073
chr17	68773429	68773868	+	Lx3_Mus	LINE	L1	chr17	68773819	68773821	+	ENSMUST00000233696.1,ENSMUSG00000041565.17	L3mbtl4	ENSMUSG00000041565.17	ENSMUST00000233696.1	protein_coding	chr17:68773820-68780086
chr17	69276976	69277391	-	BGLII	LTR	ERVK	chr17	69277207	69277209	-	ENSMUST00000187090.1,ENSMUSG00000100572.1	2410021H03Rik	ENSMUSG00000100572.1	ENSMUST00000187090.1	antisense	chr17:69275362-69277208
chr17	69383293	69383359	+	G-rich	Low_complexity	Low_complexity	chr17	69383318	69383320	+	ENSMUST00000062369.13,ENSMUSG00000049672.15	Zbtb14	ENSMUSG00000049672.15	ENSMUST00000062369.13	protein_coding	chr17:69383319-69390750
chr17	69383799	69383856	+	GC_rich	Low_complexity	Low_complexity	chr17	69383839	69383841	+	ENSMUST00000112676.3,ENSMUSG00000049672.15	Zbtb14	ENSMUSG00000049672.15	ENSMUST00000112676.3	protein_coding	chr17:69383840-69391199
chr17	69775994	69776175	+	URR1A	DNA	hAT-Charlie	chr17	69776011	69776013	-	ENSMUST00000233218.1,ENSMUSG00000117124.1	AC165264.1	ENSMUSG00000117124.1	ENSMUST00000233218.1	lincRNA	chr17:69766903-69776012
chr17	70805834	70806125	-	ORR1A4	LTR	ERVL-MaLR	chr17	70805996	70805998	-	ENSMUST00000233559.1,ENSMUSG00000117231.1	AC079441.1	ENSMUSG00000117231.1	ENSMUST00000233559.1	processed_transcript	chr17:70765839-70805997
chr17	70805834	70806125	-	ORR1A4	LTR	ERVL-MaLR	chr17	70806058	70806060	-	ENSMUST00000233879.1,ENSMUSG00000117231.1	AC079441.1	ENSMUSG00000117231.1	ENSMUST00000233879.1	processed_transcript	chr17:70798626-70806059
chr17	70860496	70860646	-	B1_Mur4	SINE	Alu	chr17	70860599	70860601	-	ENSMUST00000116818.2,ENSMUSG00000080468.2	Mir1195	ENSMUSG00000080468.2	ENSMUST00000116818.2	miRNA	chr17:70860503-70860600
chr17	70877983	70878111	+	CT-rich	Low_complexity	Low_complexity	chr17	70878077	70878079	+	ENSMUST00000180743.1,ENSMUSG00000097625.1	Gm26561	ENSMUSG00000097625.1	ENSMUST00000180743.1	lincRNA	chr17:70878078-71393284
chr17	71002012	71002095	+	GC_rich	Low_complexity	Low_complexity	chr17	71002016	71002018	-	ENSMUST00000128179.1,ENSMUSG00000024048.15	Myl12a	ENSMUSG00000024048.15	ENSMUST00000128179.1	protein_coding	chr17:70996706-71002017
chr17	71086367	71086473	-	L1M5	LINE	L1	chr17	71086395	71086397	+	ENSMUST00000233653.1,ENSMUSG00000024049.15	Myom1	ENSMUSG00000024049.15	ENSMUST00000233653.1	protein_coding	chr17:71086396-71093101
chr17	71240587	71240725	+	RLTR25B	LTR	ERVK	chr17	71240605	71240607	+	ENSMUST00000133156.7,ENSMUSG00000024052.17	Lpin2	ENSMUSG00000024052.17	ENSMUST00000133156.7	protein_coding	chr17:71240606-71244830
chr17	71240587	71240725	+	RLTR25B	LTR	ERVK	chr17	71240706	71240708	+	ENSMUST00000053173.7,ENSMUSG00000024052.17	Lpin2	ENSMUSG00000024052.17	ENSMUST00000053173.7	protein_coding	chr17:71240707-71243483
chr17	71245963	71246177	-	URR1A	DNA	hAT-Charlie	chr17	71246030	71246032	+	ENSMUST00000125665.1,ENSMUSG00000024052.17	Lpin2	ENSMUSG00000024052.17	ENSMUST00000125665.1	protein_coding	chr17:71246031-71247315
chr17	71297040	71297460	-	MTC	LTR	ERVL-MaLR	chr17	71297246	71297248	-	ENSMUST00000233343.1,ENSMUSG00000024053.11	Emilin2	ENSMUSG00000024053.11	ENSMUST00000233343.1	protein_coding	chr17:71275186-71297247
chr17	71311931	71311989	+	C-rich	Low_complexity	Low_complexity	chr17	71311977	71311979	-	ENSMUST00000233659.1,ENSMUSG00000024053.11	Emilin2	ENSMUSG00000024053.11	ENSMUST00000233659.1	protein_coding	chr17:71311539-71311978
chr17	71315369	71315692	+	Lx8	LINE	L1	chr17	71315428	71315430	+	ENSMUST00000233188.1,ENSMUSG00000117137.1	AC126942.1	ENSMUSG00000117137.1	ENSMUST00000233188.1	lincRNA	chr17:71315429-71339779
chr17	71341655	71342051	-	RMER4A	LTR	ERVK	chr17	71341765	71341767	-	ENSMUST00000232802.1,ENSMUSG00000117199.1	AC126942.2	ENSMUSG00000117199.1	ENSMUST00000232802.1	lincRNA	chr17:71333201-71341766
chr17	71341655	71342051	-	RMER4A	LTR	ERVK	chr17	71341803	71341805	-	ENSMUST00000232737.1,ENSMUSG00000117199.1	AC126942.2	ENSMUSG00000117199.1	ENSMUST00000232737.1	lincRNA	chr17:71333202-71341804
chr17	71355978	71356582	+	Lx2	LINE	L1	chr17	71356495	71356497	-	ENSMUST00000138193.7,ENSMUSG00000024054.14	Smchd1	ENSMUSG00000024054.14	ENSMUST00000138193.7	protein_coding	chr17:71344489-71356496
chr17	71361183	71361212	+	(A)n	Simple_repeat	Simple_repeat	chr17	71361191	71361193	-	ENSMUST00000182107.1,ENSMUSG00000024054.14	Smchd1	ENSMUSG00000024054.14	ENSMUST00000182107.1	protein_coding	chr17:71357086-71361192
chr17	71368832	71368970	+	B1_Mm	SINE	Alu	chr17	71368835	71368837	-	ENSMUST00000191623.1,ENSMUSG00000102863.1	Gm37639	ENSMUSG00000102863.1	ENSMUST00000191623.1	TEC	chr17:71366052-71368836
chr17	71512939	71513225	-	B4A	SINE	B4	chr17	71513107	71513109	-	ENSMUST00000233552.1,ENSMUSG00000024056.10	Ndc80	ENSMUSG00000024056.10	ENSMUST00000233552.1	protein_coding	chr17:71496103-71513108
chr17	71656975	71657122	+	B1_Mur4	SINE	Alu	chr17	71657095	71657097	+	ENSMUST00000234339.1,ENSMUSG00000041057.10	Wdr43	ENSMUSG00000041057.10	ENSMUST00000234339.1	protein_coding	chr17:71657096-71657978
chr17	71686507	71686735	-	Lx7	LINE	L1	chr17	71686700	71686702	+	ENSMUST00000144479.1,ENSMUSG00000045761.16	Togaram2	ENSMUSG00000045761.16	ENSMUST00000144479.1	protein_coding	chr17:71686701-71729543
chr17	71717522	71717919	-	ORR1C1	LTR	ERVL-MaLR	chr17	71717816	71717818	-	ENSMUST00000161407.1,ENSMUSG00000089779.1	Gm15641	ENSMUSG00000089779.1	ENSMUST00000161407.1	antisense	chr17:71716849-71717817
chr17	71926958	71927093	+	B1_Mur4	SINE	Alu	chr17	71927029	71927031	-	ENSMUST00000233690.1,ENSMUSG00000117126.1	AC154458.1	ENSMUSG00000117126.1	ENSMUST00000233690.1	TEC	chr17:71925232-71927030
chr17	72837193	72837317	+	GC_rich	Low_complexity	Low_complexity	chr17	72837312	72837314	+	ENSMUST00000233210.1,ENSMUSG00000039770.6	Ypel5	ENSMUSG00000039770.6	ENSMUST00000233210.1	protein_coding	chr17:72837313-72850437
chr17	72840912	72841052	-	B1_Mm	SINE	Alu	chr17	72840930	72840932	+	ENSMUST00000233662.1,ENSMUSG00000039770.6	Ypel5	ENSMUSG00000039770.6	ENSMUST00000233662.1	protein_coding	chr17:72840931-72846385
chr17	72987797	72987904	+	U6	snRNA	snRNA	chr17	72987797	72987799	+	ENSMUST00000179007.1,ENSMUSG00000095729.1	Gm23649	ENSMUSG00000095729.1	ENSMUST00000179007.1	snRNA	chr17:72987798-72987904
chr17	73029011	73029165	+	MIR3	SINE	MIR	chr17	73029077	73029079	-	ENSMUST00000233236.1,ENSMUSG00000117096.1	AC151266.1	ENSMUSG00000117096.1	ENSMUST00000233236.1	lincRNA	chr17:73020952-73029078
chr17	73252464	73252550	-	Charlie1b	DNA	hAT-Charlie	chr17	73252544	73252546	+	ENSMUST00000233479.1,ENSMUSG00000117292.1	AC112949.1	ENSMUSG00000117292.1	ENSMUST00000233479.1	lincRNA	chr17:73252545-73260656
chr17	73804121	73804222	-	B1_Mus2	SINE	Alu	chr17	73804133	73804135	+	ENSMUST00000233212.1,ENSMUSG00000024065.8	Ehd3	ENSMUSG00000024065.8	ENSMUST00000233212.1	protein_coding	chr17:73804134-73807661
chr17	73886665	73887086	-	RLTR10	LTR	ERVK	chr17	73886841	73886843	-	ENSMUST00000232717.1,ENSMUSG00000024066.9	Xdh	ENSMUSG00000024066.9	ENSMUST00000232717.1	protein_coding	chr17:73884310-73886842
chr17	73886665	73887086	-	RLTR10	LTR	ERVK	chr17	73886749	73886751	-	ENSMUST00000233807.1,ENSMUSG00000024066.9	Xdh	ENSMUSG00000024066.9	ENSMUST00000233807.1	protein_coding	chr17:73884411-73886750
chr17	74079090	74079388	+	MLT2D	LTR	ERVL	chr17	74079136	74079138	-	ENSMUST00000233374.1,ENSMUSG00000117226.1	CT025731.4	ENSMUSG00000117226.1	ENSMUST00000233374.1	lincRNA	chr17:74067483-74079137
chr17	74190489	74190573	+	GA-rich	Low_complexity	Low_complexity	chr17	74190498	74190500	-	ENSMUST00000233013.1,ENSMUSG00000117113.1	CT010445.1	ENSMUSG00000117113.1	ENSMUST00000233013.1	TEC	chr17:74186768-74190499
chr17	74229980	74231119	-	MTA_Mm-int	LTR	ERVL-MaLR	chr17	74230500	74230502	-	ENSMUST00000233495.1,ENSMUSG00000058704.9	Memo1	ENSMUSG00000058704.9	ENSMUST00000233495.1	protein_coding	chr17:74201116-74230501
chr17	74338936	74338990	+	(CCG)n	Simple_repeat	Simple_repeat	chr17	74338986	74338988	+	ENSMUST00000224711.1,ENSMUSG00000024068.8	Spast	ENSMUSG00000024068.8	ENSMUST00000224711.1	protein_coding	chr17:74338987-74388486
chr17	74339101	74339152	+	C-rich	Low_complexity	Low_complexity	chr17	74339135	74339137	+	ENSMUST00000225549.1,ENSMUSG00000024068.8	Spast	ENSMUSG00000024068.8	ENSMUST00000225549.1	protein_coding	chr17:74339136-74375644
chr17	74491835	74491863	-	B4A	SINE	B4	chr17	74491843	74491845	+	ENSMUST00000235064.1,ENSMUSG00000024072.9	Yipf4	ENSMUSG00000024072.9	ENSMUST00000235064.1	protein_coding	chr17:74491844-74494078
chr17	74556740	74556844	-	ID4	SINE	ID	chr17	74556782	74556784	+	ENSMUST00000182257.1,ENSMUSG00000024073.16	Birc6	ENSMUSG00000024073.16	ENSMUST00000182257.1	protein_coding	chr17:74556783-74562545
chr17	74616761	74617649	-	Lx3C	LINE	L1	chr17	74617118	74617120	-	ENSMUST00000181387.1,ENSMUSG00000097546.1	Gm26749	ENSMUSG00000097546.1	ENSMUST00000181387.1	antisense	chr17:74575381-74617119
chr17	74819533	74820085	-	RMER19C	LTR	ERVK	chr17	74819910	74819912	-	ENSMUST00000234963.1,ENSMUSG00000117444.1	AC151410.1	ENSMUSG00000117444.1	ENSMUST00000234963.1	antisense	chr17:74774811-74819911
chr17	74950166	74950531	-	RMER1A	Other	Other	chr17	74950300	74950302	-	ENSMUST00000234897.1,ENSMUSG00000117560.1	AC154178.3	ENSMUSG00000117560.1	ENSMUST00000234897.1	lincRNA	chr17:74942192-74950301
chr17	74950166	74950531	-	RMER1A	Other	Other	chr17	74950390	74950392	+	ENSMUST00000235100.1,ENSMUSG00000117342.1	AC154178.1	ENSMUSG00000117342.1	ENSMUST00000235100.1	processed_transcript	chr17:74950391-74957657
chr17	75178896	75178953	+	T-rich	Low_complexity	Low_complexity	chr17	75178910	75178912	+	ENSMUST00000112514.1,ENSMUSG00000001870.16	Ltbp1	ENSMUSG00000001870.16	ENSMUST00000112514.1	protein_coding	chr17:75178911-75391326
chr17	75490933	75491291	+	ORR1D1	LTR	ERVL-MaLR	chr17	75491103	75491105	+	ENSMUST00000234011.1,ENSMUSG00000071042.12	Rasgrp3	ENSMUSG00000071042.12	ENSMUST00000234011.1	protein_coding	chr17:75491104-75496417
chr17	76074545	76074648	+	U6	snRNA	snRNA	chr17	76074545	76074547	+	ENSMUST00000104111.1,ENSMUSG00000077299.1	Gm24126	ENSMUSG00000077299.1	ENSMUST00000104111.1	snRNA	chr17:76074546-76074651
chr17	76111200	76111304	-	HY1	scRNA	scRNA	chr17	76111303	76111305	-	ENSMUST00000083359.1,ENSMUSG00000065293.1	Gm26124	ENSMUSG00000065293.1	ENSMUST00000083359.1	misc_RNA	chr17:76111197-76111304
chr17	78200017	78200192	+	G-rich	Low_complexity	Low_complexity	chr17	78200024	78200026	-	ENSMUST00000234450.1,ENSMUSG00000117648.1	AC154366.4	ENSMUSG00000117648.1	ENSMUST00000234450.1	bidirectional_promoter_lncRNA	chr17:78199256-78200025
chr17	78401399	78401710	+	MLT1B	LTR	ERVL-MaLR	chr17	78401429	78401431	-	ENSMUST00000234601.1,ENSMUSG00000056121.16	Fez2	ENSMUSG00000056121.16	ENSMUST00000234601.1	protein_coding	chr17:78377886-78401430
chr17	78402200	78402577	+	MLT1B	LTR	ERVL-MaLR	chr17	78402534	78402536	-	ENSMUST00000234900.1,ENSMUSG00000056121.16	Fez2	ENSMUSG00000056121.16	ENSMUST00000234900.1	protein_coding	chr17:78400319-78402535
chr17	78418083	78418111	+	GC_rich	Low_complexity	Low_complexity	chr17	78418095	78418097	-	ENSMUST00000234052.1,ENSMUSG00000056121.16	Fez2	ENSMUSG00000056121.16	ENSMUST00000234052.1	protein_coding	chr17:78369212-78418096
chr17	78418083	78418111	+	GC_rich	Low_complexity	Low_complexity	chr17	78418082	78418084	-	ENSMUST00000234029.1,ENSMUSG00000056121.16	Fez2	ENSMUSG00000056121.16	ENSMUST00000234029.1	protein_coding	chr17:78377878-78418083
chr17	78418083	78418111	+	GC_rich	Low_complexity	Low_complexity	chr17	78418082	78418084	-	ENSMUST00000234530.1,ENSMUSG00000056121.16	Fez2	ENSMUSG00000056121.16	ENSMUST00000234530.1	protein_coding	chr17:78377885-78418083
chr17	78508058	78508112	+	(TG)n	Simple_repeat	Simple_repeat	chr17	78508063	78508065	+	ENSMUST00000024880.10,ENSMUSG00000024076.10	Vit	ENSMUSG00000024076.10	ENSMUST00000024880.10	protein_coding	chr17:78508064-78627398
chr17	78533923	78534013	-	5S	rRNA	rRNA	chr17	78534012	78534014	-	ENSMUST00000157334.1,ENSMUSG00000087959.1	Gm22562	ENSMUSG00000087959.1	ENSMUST00000157334.1	rRNA	chr17:78533903-78534013
chr17	78750862	78751000	+	G-rich	Low_complexity	Low_complexity	chr17	78750994	78750996	+	ENSMUST00000233584.1,ENSMUSG00000117285.1	AC151284.2	ENSMUSG00000117285.1	ENSMUST00000233584.1	processed_pseudogene	chr17:78750995-78751496
chr17	78858954	78859054	+	5S	rRNA	rRNA	chr17	78858979	78858981	-	ENSMUST00000169940.1,ENSMUSG00000024079.4	Eif2ak2	ENSMUSG00000024079.4	ENSMUST00000169940.1	protein_coding	chr17:78855354-78858980
chr17	79008458	79008514	+	L2c	LINE	L2	chr17	79008504	79008506	-	ENSMUST00000118768.7,ENSMUSG00000024070.15	Prkd3	ENSMUSG00000024070.15	ENSMUST00000118768.7	protein_coding	chr17:78951641-79008505
chr17	79008644	79009098	+	RMER17A2	LTR	ERVK	chr17	79008687	79008689	-	ENSMUST00000146917.1,ENSMUSG00000024070.15	Prkd3	ENSMUSG00000024070.15	ENSMUST00000146917.1	protein_coding	chr17:78972276-79008688
chr17	79051860	79052002	+	(TTCC)n	Simple_repeat	Simple_repeat	chr17	79051905	79051907	+	ENSMUST00000040789.5,ENSMUSG00000024084.8	Qpct	ENSMUSG00000024084.8	ENSMUST00000040789.5	protein_coding	chr17:79051906-79090378
chr17	79613858	79614031	-	B2_Mm1a	SINE	B2	chr17	79613980	79613982	+	ENSMUST00000224014.1,ENSMUSG00000036368.8	Rmdn2	ENSMUSG00000036368.8	ENSMUST00000224014.1	protein_coding	chr17:79613981-79621686
chr17	79811389	79811759	+	ORR1E	LTR	ERVL-MaLR	chr17	79811712	79811714	+	ENSMUST00000234236.1,ENSMUSG00000117394.1	AC132133.1	ENSMUSG00000117394.1	ENSMUST00000234236.1	lincRNA	chr17:79811713-79813692
chr17	79825779	79825890	-	RMER20B	LTR	ERVK	chr17	79825858	79825860	+	ENSMUST00000234471.1,ENSMUSG00000117561.1	AC117261.1	ENSMUSG00000117561.1	ENSMUST00000234471.1	lincRNA	chr17:79825859-79826893
chr17	80033510	80033595	+	U6	snRNA	snRNA	chr17	80033513	80033515	+	ENSMUST00000157558.1,ENSMUSG00000088183.1	Gm22215	ENSMUSG00000088183.1	ENSMUST00000157558.1	snRNA	chr17:80033514-80033609
chr17	80196174	80196404	-	7SK	RNA	RNA	chr17	80196403	80196405	-	ENSMUST00000157828.1,ENSMUSG00000088453.1	Gm25706	ENSMUSG00000088453.1	ENSMUST00000157828.1	misc_RNA	chr17:80196158-80196404
chr17	80267823	80267969	+	B1_Mus1	SINE	Alu	chr17	80267841	80267843	-	ENSMUST00000235024.1,ENSMUSG00000035051.15	Dhx57	ENSMUSG00000035051.15	ENSMUST00000235024.1	protein_coding	chr17:80263947-80267842
chr17	80373688	80373742	+	GC_rich	Low_complexity	Low_complexity	chr17	80373702	80373704	+	ENSMUST00000225223.2,ENSMUSG00000054901.7	Arhgef33	ENSMUSG00000054901.7	ENSMUST00000225223.2	protein_coding	chr17:80373703-80388689
chr17	80373688	80373742	+	GC_rich	Low_complexity	Low_complexity	chr17	80373714	80373716	+	ENSMUST00000225548.2,ENSMUSG00000054901.7	Arhgef33	ENSMUSG00000054901.7	ENSMUST00000225548.2	protein_coding	chr17:80373715-80384455
chr17	80479926	80479976	+	GC_rich	Low_complexity	Low_complexity	chr17	80479968	80479970	-	ENSMUST00000068714.6,ENSMUSG00000024241.7	Sos1	ENSMUSG00000024241.7	ENSMUST00000068714.6	protein_coding	chr17:80393751-80479969
chr17	80577806	80577839	+	(CA)n	Simple_repeat	Simple_repeat	chr17	80577812	80577814	-	ENSMUST00000234602.1,ENSMUSG00000033966.8	Cdkl4	ENSMUSG00000033966.8	ENSMUST00000234602.1	protein_coding	chr17:80523550-80577813
chr17	81670166	81670235	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	81670186	81670188	-	ENSMUST00000234923.1,ENSMUSG00000054640.15	Slc8a1	ENSMUSG00000054640.15	ENSMUST00000234923.1	protein_coding	chr17:81647809-81670187
chr17	82193544	82194064	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr17	82193754	82193756	+	ENSMUST00000184153.1,ENSMUSG00000099014.1	Gm27359	ENSMUSG00000099014.1	ENSMUST00000184153.1	miRNA	chr17:82193755-82193864
chr17	82232272	82232621	-	L1_Mur2	LINE	L1	chr17	82232271	82232273	-	ENSMUST00000158192.1,ENSMUSG00000088817.1	Gm22386	ENSMUSG00000088817.1	ENSMUST00000158192.1	snoRNA	chr17:82232144-82232272
chr17	82235809	82236204	+	MTA_Mm	LTR	ERVL-MaLR	chr17	82235876	82235878	+	ENSMUST00000174994.1,ENSMUSG00000094390.1	Gm23400	ENSMUSG00000094390.1	ENSMUST00000174994.1	miRNA	chr17:82235877-82235978
chr17	83068837	83069001	+	MLT1B	LTR	ERVL-MaLR	chr17	83068904	83068906	+	ENSMUST00000187700.1,ENSMUSG00000100154.1	Gm29052	ENSMUSG00000100154.1	ENSMUST00000187700.1	lincRNA	chr17:83068905-83070632
chr17	83350927	83350957	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr17	83350930	83350932	+	ENSMUST00000096766.11,ENSMUSG00000032624.16	Eml4	ENSMUSG00000032624.16	ENSMUST00000096766.11	protein_coding	chr17:83350931-83480357
chr17	83350974	83350999	+	(GA)n	Simple_repeat	Simple_repeat	chr17	83350981	83350983	+	ENSMUST00000049503.9,ENSMUSG00000032624.16	Eml4	ENSMUSG00000032624.16	ENSMUST00000049503.9	protein_coding	chr17:83350982-83480355
chr17	83350974	83350999	+	(GA)n	Simple_repeat	Simple_repeat	chr17	83350990	83350992	+	ENSMUST00000112363.9,ENSMUSG00000032624.16	Eml4	ENSMUSG00000032624.16	ENSMUST00000112363.9	protein_coding	chr17:83350991-83480264
chr17	83350974	83350999	+	(GA)n	Simple_repeat	Simple_repeat	chr17	83350992	83350994	+	ENSMUST00000234460.1,ENSMUSG00000032624.16	Eml4	ENSMUSG00000032624.16	ENSMUST00000234460.1	protein_coding	chr17:83350993-83480361
chr17	83517137	83517343	-	URR1A	DNA	hAT-Charlie	chr17	83517329	83517331	-	ENSMUST00000234258.1,ENSMUSG00000024248.14	Cox7a2l	ENSMUSG00000024248.14	ENSMUST00000234258.1	protein_coding	chr17:83502330-83517330
chr17	83706165	83706218	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	83706183	83706185	+	ENSMUST00000177069.7,ENSMUSG00000055817.18	Mta3	ENSMUSG00000055817.18	ENSMUST00000177069.7	protein_coding	chr17:83706184-83821516
chr17	83706165	83706218	+	(CGG)n	Simple_repeat	Simple_repeat	chr17	83706190	83706192	+	ENSMUST00000067826.14,ENSMUSG00000055817.18	Mta3	ENSMUSG00000055817.18	ENSMUST00000067826.14	protein_coding	chr17:83706191-83814905
chr17	83729090	83729196	-	B1_Mur2	SINE	Alu	chr17	83729163	83729165	+	ENSMUST00000177416.1,ENSMUSG00000055817.18	Mta3	ENSMUSG00000055817.18	ENSMUST00000177416.1	protein_coding	chr17:83729164-83753868
chr17	83847711	83848039	-	ORR1A4	LTR	ERVL-MaLR	chr17	83847962	83847964	-	ENSMUST00000234823.1,ENSMUSG00000000673.9	Haao	ENSMUSG00000000673.9	ENSMUST00000234823.1	protein_coding	chr17:83837173-83847963
chr17	83854216	83854572	-	ORR1B2	LTR	ERVL-MaLR	chr17	83854392	83854394	-	ENSMUST00000180515.1,ENSMUSG00000097254.2	C430042M11Rik	ENSMUSG00000097254.2	ENSMUST00000180515.1	lincRNA	chr17:83851675-83854393
chr17	83854216	83854572	-	ORR1B2	LTR	ERVL-MaLR	chr17	83854417	83854419	-	ENSMUST00000234697.1,ENSMUSG00000097254.2	C430042M11Rik	ENSMUSG00000097254.2	ENSMUST00000234697.1	lincRNA	chr17:83851751-83854418
chr17	83947587	83947678	+	5S	rRNA	rRNA	chr17	83947587	83947589	+	ENSMUST00000157568.1,ENSMUSG00000088193.1	Gm23905	ENSMUSG00000088193.1	ENSMUST00000157568.1	rRNA	chr17:83947588-83947696
chr17	84016904	84017080	-	MLT1F	LTR	ERVL-MaLR	chr17	84017055	84017057	-	ENSMUST00000194096.1,ENSMUSG00000103015.1	Gm37549	ENSMUSG00000103015.1	ENSMUST00000194096.1	TEC	chr17:84012992-84017056
chr17	84036625	84037026	+	MTC	LTR	ERVL-MaLR	chr17	84036889	84036891	+	ENSMUST00000234723.1,ENSMUSG00000117432.1	AC091309.3	ENSMUSG00000117432.1	ENSMUST00000234723.1	lincRNA	chr17:84036890-84038262
chr17	84139639	84140034	-	MTA_Mm	LTR	ERVL-MaLR	chr17	84139840	84139842	-	ENSMUST00000234741.1,ENSMUSG00000117485.1	AC132455.2	ENSMUSG00000117485.1	ENSMUST00000234741.1	lincRNA	chr17:84134033-84139841
chr17	84287650	84287747	-	U6	snRNA	snRNA	chr17	84287746	84287748	-	ENSMUST00000083798.1,ENSMUSG00000065732.1	Gm24492	ENSMUSG00000065732.1	ENSMUST00000083798.1	snRNA	chr17:84287641-84287747
chr17	84368655	84368797	+	L2	LINE	L2	chr17	84368779	84368781	-	ENSMUST00000234547.1,ENSMUSG00000024251.10	Thada	ENSMUSG00000024251.10	ENSMUST00000234547.1	protein_coding	chr17:84191537-84368780
chr17	84391428	84391535	+	U6	snRNA	snRNA	chr17	84391428	84391430	+	ENSMUST00000179017.1,ENSMUSG00000096415.1	Gm24722	ENSMUSG00000096415.1	ENSMUST00000179017.1	snRNA	chr17:84391429-84391535
chr17	84575420	84575620	+	B3	SINE	B2	chr17	84575549	84575551	+	ENSMUST00000235090.1,ENSMUSG00000040852.6	Plekhh2	ENSMUSG00000040852.6	ENSMUST00000235090.1	protein_coding	chr17:84575550-84583714
chr17	84624316	84624403	-	URR1B	DNA	hAT-Charlie	chr17	84624401	84624403	+	ENSMUST00000083385.1,ENSMUSG00000065319.1	Gm26066	ENSMUSG00000065319.1	ENSMUST00000083385.1	snRNA	chr17:84624402-84624510
chr17	84840161	84840611	+	RMER19C	LTR	ERVK	chr17	84840295	84840297	-	ENSMUST00000235108.1,ENSMUSG00000117595.1	AC122243.1	ENSMUSG00000117595.1	ENSMUST00000235108.1	lincRNA	chr17:84823256-84840296
chr17	84957942	84958018	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	84957998	84958000	+	ENSMUST00000080217.13,ENSMUSG00000061130.13	Ppm1b	ENSMUSG00000061130.13	ENSMUST00000080217.13	protein_coding	chr17:84957999-85014691
chr17	84957942	84958018	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	84958008	84958010	+	ENSMUST00000112304.9,ENSMUSG00000061130.13	Ppm1b	ENSMUSG00000061130.13	ENSMUST00000112304.9	protein_coding	chr17:84958009-85017197
chr17	84965004	84965093	-	PB1	SINE	Alu	chr17	84965032	84965034	+	ENSMUST00000234540.1,ENSMUSG00000061130.13	Ppm1b	ENSMUSG00000061130.13	ENSMUST00000234540.1	protein_coding	chr17:84965033-85023991
chr17	85077467	85077542	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr17	85077473	85077475	-	ENSMUST00000234994.1,ENSMUSG00000024127.15	Prepl	ENSMUSG00000024127.15	ENSMUST00000234994.1	protein_coding	chr17:85064529-85077474
chr17	85091750	85092136	-	MTE2b	LTR	ERVL-MaLR	chr17	85092082	85092084	+	ENSMUST00000234501.1,ENSMUSG00000071037.6	Camkmt	ENSMUSG00000071037.6	ENSMUST00000234501.1	protein_coding	chr17:85092083-85166508
chr17	85621018	85621070	+	(TG)n	Simple_repeat	Simple_repeat	chr17	85621030	85621032	+	ENSMUST00000162695.2,ENSMUSG00000038805.10	Six3	ENSMUSG00000038805.10	ENSMUST00000162695.2	protein_coding	chr17:85621031-85629302
chr17	85688214	85688257	+	(CTCG)n	Simple_repeat	Simple_repeat	chr17	85688253	85688255	-	ENSMUST00000024947.7,ENSMUSG00000024134.11	Six2	ENSMUSG00000024134.11	ENSMUST00000024947.7	protein_coding	chr17:85684282-85688254
chr17	86120176	86120287	+	B1_Mus2	SINE	Alu	chr17	86120270	86120272	-	ENSMUST00000234595.1,ENSMUSG00000024135.10	Srbd1	ENSMUSG00000024135.10	ENSMUST00000234595.1	protein_coding	chr17:86057674-86120271
chr17	86175284	86175703	+	L2a	LINE	L2	chr17	86175574	86175576	+	ENSMUST00000234087.1,ENSMUSG00000117546.1	AC154542.1	ENSMUSG00000117546.1	ENSMUST00000234087.1	TEC	chr17:86175575-86178029
chr17	86839890	86840048	+	L3	LINE	CR1	chr17	86840029	86840031	+	ENSMUST00000189953.1,ENSMUSG00000099798.1	Gm29168	ENSMUSG00000099798.1	ENSMUST00000189953.1	lincRNA	chr17:86840030-86840716
chr17	87183991	87184460	-	MT2_Mm	LTR	ERVL	chr17	87184224	87184226	-	ENSMUST00000116918.1,ENSMUSG00000095035.1	Gm22346	ENSMUSG00000095035.1	ENSMUST00000116918.1	miRNA	chr17:87184105-87184225
chr17	87265909	87265989	+	C-rich	Low_complexity	Low_complexity	chr17	87265934	87265936	-	ENSMUST00000024963.10,ENSMUSG00000024150.12	Mcfd2	ENSMUSG00000024150.12	ENSMUST00000024963.10	protein_coding	chr17:87254443-87265935
chr17	87282890	87282960	+	(CAG)n	Simple_repeat	Simple_repeat	chr17	87282892	87282894	+	ENSMUST00000126497.1,ENSMUSG00000036918.16	Ttc7	ENSMUSG00000036918.16	ENSMUST00000126497.1	protein_coding	chr17:87282893-87292929
chr17	87282890	87282960	+	(CAG)n	Simple_repeat	Simple_repeat	chr17	87282904	87282906	+	ENSMUST00000125875.7,ENSMUSG00000036918.16	Ttc7	ENSMUSG00000036918.16	ENSMUST00000125875.7	protein_coding	chr17:87282905-87371904
chr17	87282890	87282960	+	(CAG)n	Simple_repeat	Simple_repeat	chr17	87282947	87282949	+	ENSMUST00000234468.1,ENSMUSG00000036918.16	Ttc7	ENSMUSG00000036918.16	ENSMUST00000234468.1	protein_coding	chr17:87282948-87283815
chr17	87282890	87282960	+	(CAG)n	Simple_repeat	Simple_repeat	chr17	87282950	87282952	+	ENSMUST00000144204.7,ENSMUSG00000036918.16	Ttc7	ENSMUSG00000036918.16	ENSMUST00000144204.7	protein_coding	chr17:87282951-87361921
chr17	87309158	87309395	-	MER21C	LTR	ERVL	chr17	87309331	87309333	+	ENSMUST00000127970.7,ENSMUSG00000036918.16	Ttc7	ENSMUSG00000036918.16	ENSMUST00000127970.7	protein_coding	chr17:87309332-87330077
chr17	87473594	87473754	-	L2	LINE	L2	chr17	87473741	87473743	-	ENSMUST00000234254.1,ENSMUSG00000117486.1	AC122818.3	ENSMUSG00000117486.1	ENSMUST00000234254.1	lincRNA	chr17:87464640-87473742
chr17	87969214	87969297	-	B1F	SINE	Alu	chr17	87969219	87969221	-	ENSMUST00000234265.1,ENSMUSG00000117522.1	AC087233.2	ENSMUSG00000117522.1	ENSMUST00000234265.1	processed_pseudogene	chr17:87969004-87969220
chr17	87979485	87979877	+	MTA_Mm	LTR	ERVL-MaLR	chr17	87979702	87979704	+	ENSMUST00000234756.1,ENSMUSG00000005370.4	Msh6	ENSMUSG00000005370.4	ENSMUST00000234756.1	protein_coding	chr17:87979703-87984558
chr17	88000955	88001003	+	(T)n	Simple_repeat	Simple_repeat	chr17	88000981	88000983	-	ENSMUST00000127334.1,ENSMUSG00000005371.15	Fbxo11	ENSMUSG00000005371.15	ENSMUST00000127334.1	protein_coding	chr17:87993213-88000982
chr17	88125031	88125554	-	RLTR24	LTR	ERV1	chr17	88125511	88125513	+	ENSMUST00000183295.1,ENSMUSG00000058869.9	Gm4832	ENSMUSG00000058869.9	ENSMUST00000183295.1	transcribed_processed_pseudogene	chr17:88125512-88131006
chr17	88305377	88305617	+	RLTR51A_Mm	LTR	ERVK?	chr17	88305534	88305536	-	ENSMUST00000234211.1,ENSMUSG00000117497.1	AC165153.2	ENSMUSG00000117497.1	ENSMUST00000234211.1	lincRNA	chr17:88296036-88305535
chr17	88305377	88305617	+	RLTR51A_Mm	LTR	ERVK?	chr17	88305377	88305379	-	ENSMUST00000234925.1,ENSMUSG00000117497.1	AC165153.2	ENSMUSG00000117497.1	ENSMUST00000234925.1	lincRNA	chr17:88296068-88305378
chr17	88342395	88342484	-	U6	snRNA	snRNA	chr17	88342481	88342483	-	ENSMUST00000158166.1,ENSMUSG00000088791.1	Gm22542	ENSMUSG00000088791.1	ENSMUST00000158166.1	snRNA	chr17:88342388-88342482
chr17	88392825	88392932	-	U6	snRNA	snRNA	chr17	88392931	88392933	-	ENSMUST00000093636.2,ENSMUSG00000095624.1	Gm23947	ENSMUSG00000095624.1	ENSMUST00000093636.2	snRNA	chr17:88392826-88392932
chr17	88440580	88440737	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	88440710	88440712	+	ENSMUST00000112238.8,ENSMUSG00000034998.18	Foxn2	ENSMUSG00000034998.18	ENSMUST00000112238.8	protein_coding	chr17:88440711-88490533
chr17	88440580	88440737	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr17	88440734	88440736	+	ENSMUST00000155640.1,ENSMUSG00000034998.18	Foxn2	ENSMUSG00000034998.18	ENSMUST00000155640.1	protein_coding	chr17:88440735-88463037
chr17	88440669	88440723	+	G-rich	Low_complexity	Low_complexity	chr17	88440710	88440712	+	ENSMUST00000112238.8,ENSMUSG00000034998.18	Foxn2	ENSMUSG00000034998.18	ENSMUST00000112238.8	protein_coding	chr17:88440711-88490533
chr17	88530200	88530236	+	GC_rich	Low_complexity	Low_complexity	chr17	88530215	88530217	+	ENSMUST00000189734.1,ENSMUSG00000034709.8	Ppp1r21	ENSMUSG00000034709.8	ENSMUST00000189734.1	protein_coding	chr17:88530216-88543436
chr17	88597634	88597690	+	C-rich	Low_complexity	Low_complexity	chr17	88597683	88597685	+	ENSMUST00000137138.1,ENSMUSG00000033855.15	Ston1	ENSMUSG00000033855.15	ENSMUST00000137138.1	protein_coding	chr17:88597684-88635829
chr17	88627364	88627459	+	MIRb	SINE	MIR	chr17	88627363	88627365	+	ENSMUST00000112216.1,ENSMUSG00000033855.15	Ston1	ENSMUSG00000033855.15	ENSMUST00000112216.1	protein_coding	chr17:88627364-88637634
chr17	88664764	88664911	-	MLT1F1	LTR	ERVL-MaLR	chr17	88664764	88664766	-	ENSMUST00000234688.1,ENSMUSG00000117567.1	AC166350.2	ENSMUSG00000117567.1	ENSMUST00000234688.1	lincRNA	chr17:88663001-88664765
chr17	88774018	88774228	+	UCON29	DNA	PiggyBac?	chr17	88774055	88774057	-	ENSMUST00000234881.1,ENSMUSG00000024107.7	Lhcgr	ENSMUSG00000024107.7	ENSMUST00000234881.1	protein_coding	chr17:88716481-88774056
chr17	89751738	89756965	+	L1Md_F3	LINE	L1	chr17	89752525	89752527	-	ENSMUST00000234973.1,ENSMUSG00000117511.1	AC154561.1	ENSMUSG00000117511.1	ENSMUST00000234973.1	lincRNA	chr17:89701897-89752526
chr17	89910442	89911103	+	Lx2A1	LINE	L1	chr17	89910448	89910450	-	ENSMUST00000086423.5,ENSMUSG00000066878.5	Gm10184	ENSMUSG00000066878.5	ENSMUST00000086423.5	protein_coding	chr17:89908462-89910449
chr17	90455845	90455912	+	A-rich	Low_complexity	Low_complexity	chr17	90455871	90455873	-	ENSMUST00000159778.7,ENSMUSG00000024109.18	Nrxn1	ENSMUSG00000024109.18	ENSMUST00000159778.7	protein_coding	chr17:90035800-90455872
chr17	90455845	90455912	+	A-rich	Low_complexity	Low_complexity	chr17	90455885	90455887	-	ENSMUST00000174337.7,ENSMUSG00000024109.18	Nrxn1	ENSMUSG00000024109.18	ENSMUST00000174337.7	protein_coding	chr17:90036297-90455886
chr17	90794006	90794212	-	B2_Mm2	SINE	B2	chr17	90794005	90794007	-	ENSMUST00000173765.1,ENSMUSG00000092549.1	Gm20491	ENSMUSG00000092549.1	ENSMUST00000173765.1	processed_pseudogene	chr17:90792766-90794006
chr17	91092761	91092813	+	GA-rich	Low_complexity	Low_complexity	chr17	91092802	91092804	-	ENSMUST00000161102.8,ENSMUSG00000024109.18	Nrxn1	ENSMUSG00000024109.18	ENSMUST00000161102.8	protein_coding	chr17:90208288-91092803
chr17	91092761	91092813	+	GA-rich	Low_complexity	Low_complexity	chr17	91092770	91092772	-	ENSMUST00000160467.7,ENSMUSG00000024109.18	Nrxn1	ENSMUSG00000024109.18	ENSMUST00000160467.7	protein_coding	chr17:90699931-91092771
chr17	91092761	91092813	+	GA-rich	Low_complexity	Low_complexity	chr17	91092790	91092792	-	ENSMUST00000159419.1,ENSMUSG00000024109.18	Nrxn1	ENSMUSG00000024109.18	ENSMUST00000159419.1	protein_coding	chr17:90703176-91092791
chr17	91556829	91557297	+	RLTR45	LTR	ERVK	chr17	91557126	91557128	+	ENSMUST00000141811.1,ENSMUSG00000087425.1	Gm15404	ENSMUSG00000087425.1	ENSMUST00000141811.1	lincRNA	chr17:91557127-91591927
chr17	91562242	91566400	+	MMERGLN-int	LTR	ERV1	chr17	91566103	91566105	+	ENSMUST00000234668.1,ENSMUSG00000117417.1	AC154349.1	ENSMUSG00000117417.1	ENSMUST00000234668.1	lincRNA	chr17:91566104-91628246
chr17	91562242	91566400	+	MMERGLN-int	LTR	ERV1	chr17	91566114	91566116	+	ENSMUST00000234155.1,ENSMUSG00000117417.1	AC154349.1	ENSMUSG00000117417.1	ENSMUST00000234155.1	lincRNA	chr17:91566115-91628471
chr17	91812616	91812702	-	4.5SRNA	scRNA	scRNA	chr17	91812619	91812621	-	ENSMUST00000157317.1,ENSMUSG00000087942.1	Gm24244	ENSMUSG00000087942.1	ENSMUST00000157317.1	snoRNA	chr17:91812491-91812620
chr17	91862467	91862656	+	ORR1C2	LTR	ERVL-MaLR	chr17	91862601	91862603	+	ENSMUST00000199560.1,ENSMUSG00000105064.1	Gm44345	ENSMUSG00000105064.1	ENSMUST00000199560.1	miRNA	chr17:91862602-91862736
chr17	91871758	91872455	-	RMER19A	LTR	ERVK	chr17	91872138	91872140	-	ENSMUST00000234442.1,ENSMUSG00000117433.1	AC154617.1	ENSMUSG00000117433.1	ENSMUST00000234442.1	lincRNA	chr17:91811992-91872139
chr17	91871758	91872455	-	RMER19A	LTR	ERVK	chr17	91872138	91872140	-	ENSMUST00000234041.1,ENSMUSG00000117433.1	AC154617.1	ENSMUSG00000117433.1	ENSMUST00000234041.1	lincRNA	chr17:91811992-91872139
chr17	91871758	91872455	-	RMER19A	LTR	ERVK	chr17	91872138	91872140	-	ENSMUST00000234556.1,ENSMUSG00000117433.1	AC154617.1	ENSMUSG00000117433.1	ENSMUST00000234556.1	lincRNA	chr17:91847951-91872139
chr17	92180996	92181072	+	A-rich	Low_complexity	Low_complexity	chr17	92181064	92181066	+	ENSMUST00000234894.1,ENSMUSG00000117584.1	CT025880.2	ENSMUSG00000117584.1	ENSMUST00000234894.1	processed_pseudogene	chr17:92181065-92181398
chr17	93246707	93246814	-	U6	snRNA	snRNA	chr17	93246813	93246815	-	ENSMUST00000178746.1,ENSMUSG00000094473.1	Gm25935	ENSMUSG00000094473.1	ENSMUST00000178746.1	snRNA	chr17:93246708-93246814
chr17	93391691	93392278	+	L1_Mus4	LINE	L1	chr17	93391697	93391699	-	ENSMUST00000234726.1,ENSMUSG00000117368.1	CT030715.2	ENSMUSG00000117368.1	ENSMUST00000234726.1	processed_pseudogene	chr17:93391347-93391698
chr17	93681033	93681126	+	(CA)n	Simple_repeat	Simple_repeat	chr17	93681033	93681035	-	ENSMUST00000234228.1,ENSMUSG00000117537.1	AC116658.2	ENSMUSG00000117537.1	ENSMUST00000234228.1	processed_pseudogene	chr17:93680752-93681034
chr17	94764429	94764572	-	B1_Mm	SINE	Alu	chr17	94764540	94764542	-	ENSMUST00000084298.5,ENSMUSG00000066057.7	Gm1976	ENSMUSG00000066057.7	ENSMUST00000084298.5	processed_transcript	chr17:94761250-94764541
chr17	94764825	94764910	+	5S	rRNA	rRNA	chr17	94764824	94764826	+	ENSMUST00000157966.1,ENSMUSG00000088591.1	Gm23964	ENSMUSG00000088591.1	ENSMUST00000157966.1	rRNA	chr17:94764825-94764931
chr17	94801692	94803199	-	Lx3_Mus	LINE	L1	chr17	94803192	94803194	+	ENSMUST00000234672.1,ENSMUSG00000117642.1	AC144860.3	ENSMUSG00000117642.1	ENSMUST00000234672.1	processed_pseudogene	chr17:94803193-94803818
chr17	94816022	94816979	-	ORR1A4-int	LTR	ERVL-MaLR	chr17	94816062	94816064	-	ENSMUST00000234240.1,ENSMUSG00000117499.1	AC144860.1	ENSMUSG00000117499.1	ENSMUST00000234240.1	TEC	chr17:94814741-94816063
chr17	94873750	94875497	+	MurSatRep1	Unknown	Unknown	chr17	94873985	94873987	+	ENSMUST00000108007.4,ENSMUSG00000095193.2	Gm20939	ENSMUSG00000095193.2	ENSMUST00000108007.4	lincRNA	chr17:94873986-94877497
chr18	3015885	3015949	-	MER130	Unknown	Unknown	chr18	3015907	3015909	+	ENSMUST00000234132.1,ENSMUSG00000117547.1	AC125218.3	ENSMUSG00000117547.1	ENSMUST00000234132.1	processed_pseudogene	chr18:3015908-3016159
chr18	3471320	3471765	+	RLTR45	LTR	ERVK	chr18	3471629	3471631	+	ENSMUST00000179907.1,ENSMUSG00000096528.1	G430049J08Rik	ENSMUSG00000096528.1	ENSMUST00000179907.1	TEC	chr18:3471630-3474315
chr18	3860107	3860340	+	7SK	RNA	RNA	chr18	3860107	3860109	+	ENSMUST00000122770.1,ENSMUSG00000084719.1	Gm24632	ENSMUSG00000084719.1	ENSMUST00000122770.1	misc_RNA	chr18:3860108-3860430
chr18	4634860	4634913	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr18	4634877	4634879	+	ENSMUST00000234494.1,ENSMUSG00000033960.6	Jcad	ENSMUSG00000033960.6	ENSMUST00000234494.1	protein_coding	chr18:4634878-4649927
chr18	4634860	4634913	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr18	4634877	4634879	+	ENSMUST00000037029.6,ENSMUSG00000033960.6	Jcad	ENSMUSG00000033960.6	ENSMUST00000037029.6	protein_coding	chr18:4634878-4682869
chr18	4812429	4812590	+	(CCTG)n	Simple_repeat	Simple_repeat	chr18	4812485	4812487	+	ENSMUST00000180904.1,ENSMUSG00000097043.1	Gm10556	ENSMUSG00000097043.1	ENSMUST00000180904.1	lincRNA	chr18:4812486-4850959
chr18	5370307	5370922	+	Lx9	LINE	L1	chr18	5370481	5370483	-	ENSMUST00000234572.1,ENSMUSG00000117617.1	AC111128.2	ENSMUSG00000117617.1	ENSMUST00000234572.1	lincRNA	chr18:5368541-5370482
chr18	5521089	5521113	+	(A)n	Simple_repeat	Simple_repeat	chr18	5521108	5521110	-	ENSMUST00000177190.2,ENSMUSG00000063087.15	Gm10125	ENSMUSG00000063087.15	ENSMUST00000177190.2	processed_transcript	chr18:5518415-5521109
chr18	5591813	5591873	+	G-rich	Low_complexity	Low_complexity	chr18	5591859	5591861	+	ENSMUST00000224200.2,ENSMUSG00000024238.15	Zeb1	ENSMUSG00000024238.15	ENSMUST00000224200.2	protein_coding	chr18:5591860-5641385
chr18	5591813	5591873	+	G-rich	Low_complexity	Low_complexity	chr18	5591863	5591865	+	ENSMUST00000025081.12,ENSMUSG00000024238.15	Zeb1	ENSMUSG00000024238.15	ENSMUST00000025081.12	protein_coding	chr18:5591864-5775467
chr18	5591813	5591873	+	G-rich	Low_complexity	Low_complexity	chr18	5591871	5591873	+	ENSMUST00000160522.1,ENSMUSG00000024238.15	Zeb1	ENSMUSG00000024238.15	ENSMUST00000160522.1	protein_coding	chr18:5591872-5706884
chr18	5592362	5592424	+	G-rich	Low_complexity	Low_complexity	chr18	5592392	5592394	-	ENSMUST00000161921.7,ENSMUSG00000063087.15	Gm10125	ENSMUSG00000063087.15	ENSMUST00000161921.7	processed_transcript	chr18:5491503-5592393
chr18	5592362	5592424	+	G-rich	Low_complexity	Low_complexity	chr18	5592392	5592394	-	ENSMUST00000178464.7,ENSMUSG00000063087.15	Gm10125	ENSMUSG00000063087.15	ENSMUST00000178464.7	processed_transcript	chr18:5525293-5592393
chr18	5592362	5592424	+	G-rich	Low_complexity	Low_complexity	chr18	5592381	5592383	-	ENSMUST00000074702.9,ENSMUSG00000063087.15	Gm10125	ENSMUSG00000063087.15	ENSMUST00000074702.9	processed_transcript	chr18:5565650-5592382
chr18	5611879	5611969	+	PB1D10	SINE	Alu	chr18	5611929	5611931	-	ENSMUST00000162143.2,ENSMUSG00000090078.2	Gm16147	ENSMUSG00000090078.2	ENSMUST00000162143.2	processed_pseudogene	chr18:5611558-5611930
chr18	5614439	5614635	-	RLTR17B_Mm	LTR	ERVK	chr18	5614472	5614474	+	ENSMUST00000116893.1,ENSMUSG00000080543.1	Gm22709	ENSMUSG00000080543.1	ENSMUST00000116893.1	miRNA	chr18:5614473-5614583
chr18	5730924	5731903	+	L1Md_F2	LINE	L1	chr18	5731080	5731082	+	ENSMUST00000177030.1,ENSMUSG00000024238.15	Zeb1	ENSMUSG00000024238.15	ENSMUST00000177030.1	protein_coding	chr18:5731081-5772804
chr18	6092659	6094330	+	L1_Mus2	LINE	L1	chr18	6092856	6092858	-	ENSMUST00000182101.7,ENSMUSG00000041225.16	Arhgap12	ENSMUSG00000041225.16	ENSMUST00000182101.7	protein_coding	chr18:6039406-6092857
chr18	6733826	6733991	-	MIR	SINE	MIR	chr18	6733904	6733906	+	ENSMUST00000234356.1,ENSMUSG00000073639.6	Rab18	ENSMUSG00000073639.6	ENSMUST00000234356.1	protein_coding	chr18:6733905-6784669
chr18	6791043	6791097	+	T-rich	Low_complexity	Low_complexity	chr18	6791066	6791068	+	ENSMUST00000234748.1,ENSMUSG00000117461.1	AC131796.2	ENSMUSG00000117461.1	ENSMUST00000234748.1	sense_overlapping	chr18:6791067-6792137
chr18	6992966	6993518	-	Lx9	LINE	L1	chr18	6992987	6992989	-	ENSMUST00000188926.1,ENSMUSG00000061013.6	Mkx	ENSMUSG00000061013.6	ENSMUST00000188926.1	protein_coding	chr18:6936952-6992988
chr18	7151149	7153215	+	L1VL1	LINE	L1	chr18	7151776	7151778	-	ENSMUST00000234167.1,ENSMUSG00000117383.1	AC139334.3	ENSMUSG00000117383.1	ENSMUST00000234167.1	TEC	chr18:7150344-7151777
chr18	7465320	7466487	+	L1Md_F	LINE	L1	chr18	7466172	7466174	-	ENSMUST00000234522.1,ENSMUSG00000057440.8	Mpp7	ENSMUSG00000057440.8	ENSMUST00000234522.1	protein_coding	chr18:7444027-7466173
chr18	7608967	7609135	+	SUBTEL_sa	Satellite	Satellite	chr18	7608981	7608983	-	ENSMUST00000234510.1,ENSMUSG00000057440.8	Mpp7	ENSMUSG00000057440.8	ENSMUST00000234510.1	protein_coding	chr18:7436069-7608982
chr18	7608967	7609135	+	SUBTEL_sa	Satellite	Satellite	chr18	7608970	7608972	-	ENSMUST00000234874.1,ENSMUSG00000057440.8	Mpp7	ENSMUSG00000057440.8	ENSMUST00000234874.1	protein_coding	chr18:7458935-7608971
chr18	7692675	7692811	+	T-rich	Low_complexity	Low_complexity	chr18	7692725	7692727	-	ENSMUST00000234387.1,ENSMUSG00000117542.1	AC130218.1	ENSMUSG00000117542.1	ENSMUST00000234387.1	processed_pseudogene	chr18:7684530-7692726
chr18	7835176	7835273	+	U6	snRNA	snRNA	chr18	7835176	7835178	+	ENSMUST00000082888.1,ENSMUSG00000064822.1	Gm24292	ENSMUSG00000064822.1	ENSMUST00000082888.1	snRNA	chr18:7835177-7835283
chr18	7869485	7869526	+	(CCCG)n	Simple_repeat	Simple_repeat	chr18	7869492	7869494	+	ENSMUST00000092112.10,ENSMUSG00000024283.15	Wac	ENSMUSG00000024283.15	ENSMUST00000092112.10	protein_coding	chr18:7869493-7927519
chr18	7869485	7869526	+	(CCCG)n	Simple_repeat	Simple_repeat	chr18	7869500	7869502	+	ENSMUST00000172018.7,ENSMUSG00000024283.15	Wac	ENSMUSG00000024283.15	ENSMUST00000172018.7	protein_coding	chr18:7869501-7926139
chr18	8180320	8180781	+	RLTR10	LTR	ERVK	chr18	8180578	8180580	+	ENSMUST00000234784.1,ENSMUSG00000117490.1	AC141429.2	ENSMUSG00000117490.1	ENSMUST00000234784.1	lincRNA	chr18:8180579-8192719
chr18	8183029	8183490	+	RLTR10	LTR	ERVK	chr18	8183266	8183268	+	ENSMUST00000234300.1,ENSMUSG00000117490.1	AC141429.2	ENSMUSG00000117490.1	ENSMUST00000234300.1	lincRNA	chr18:8183267-8188518
chr18	8697967	8703390	+	L1Md_F2	LINE	L1	chr18	8698355	8698357	-	ENSMUST00000175601.1,ENSMUSG00000093342.1	Gm26119	ENSMUSG00000093342.1	ENSMUST00000175601.1	miRNA	chr18:8698253-8698356
chr18	9436782	9437333	+	L1_Mus2	LINE	L1	chr18	9436849	9436851	-	ENSMUST00000234877.1,ENSMUSG00000117448.1	AC161530.1	ENSMUSG00000117448.1	ENSMUST00000234877.1	TEC	chr18:9434823-9436850
chr18	9450138	9450201	+	GC_rich	Low_complexity	Low_complexity	chr18	9450149	9450151	-	ENSMUST00000053917.5,ENSMUSG00000024286.8	Ccny	ENSMUSG00000024286.8	ENSMUST00000053917.5	protein_coding	chr18:9312304-9450150
chr18	9450138	9450201	+	GC_rich	Low_complexity	Low_complexity	chr18	9450153	9450155	-	ENSMUST00000234382.1,ENSMUSG00000024286.8	Ccny	ENSMUSG00000024286.8	ENSMUST00000234382.1	protein_coding	chr18:9386401-9450154
chr18	9827099	9827119	+	L1_Mus3	LINE	L1	chr18	9827118	9827120	-	ENSMUST00000175075.1,ENSMUSG00000092816.1	Gm23637	ENSMUSG00000092816.1	ENSMUST00000175075.1	miRNA	chr18:9827026-9827119
chr18	10016885	10016925	+	(A)n	Simple_repeat	Simple_repeat	chr18	10016924	10016926	-	ENSMUST00000145929.1,ENSMUSG00000047879.17	Usp14	ENSMUSG00000047879.17	ENSMUST00000145929.1	protein_coding	chr18:10012001-10016925
chr18	10030116	10030247	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr18	10030140	10030142	-	ENSMUST00000092096.13,ENSMUSG00000047879.17	Usp14	ENSMUSG00000047879.17	ENSMUST00000092096.13	protein_coding	chr18:9993066-10030141
chr18	10044965	10045395	-	RLTR1B	LTR	ERV1	chr18	10045104	10045106	-	ENSMUST00000234243.1,ENSMUSG00000047879.17	Usp14	ENSMUSG00000047879.17	ENSMUST00000234243.1	protein_coding	chr18:10012225-10045105
chr18	10044965	10045395	-	RLTR1B	LTR	ERV1	chr18	10045118	10045120	-	ENSMUST00000142013.1,ENSMUSG00000047879.17	Usp14	ENSMUSG00000047879.17	ENSMUST00000142013.1	protein_coding	chr18:10021704-10045119
chr18	10067756	10068457	+	L1_Mus1	LINE	L1	chr18	10067909	10067911	-	ENSMUST00000235067.1,ENSMUSG00000024290.9	Rock1	ENSMUSG00000024290.9	ENSMUST00000235067.1	protein_coding	chr18:10065679-10067910
chr18	10071982	10072160	-	B3	SINE	B2	chr18	10072142	10072144	-	ENSMUST00000234463.1,ENSMUSG00000024290.9	Rock1	ENSMUSG00000024290.9	ENSMUST00000234463.1	protein_coding	chr18:10068650-10072143
chr18	10087143	10089440	+	L1_Mus2	LINE	L1	chr18	10088207	10088209	-	ENSMUST00000234926.1,ENSMUSG00000024290.9	Rock1	ENSMUSG00000024290.9	ENSMUST00000234926.1	protein_coding	chr18:10084369-10088208
chr18	10150975	10151140	-	U1	snRNA	snRNA	chr18	10151139	10151141	-	ENSMUST00000083435.2,ENSMUSG00000095616.1	Gm26244	ENSMUSG00000095616.1	ENSMUST00000083435.2	snRNA	chr18:10150977-10151140
chr18	10181771	10181798	+	(CCG)n	Simple_repeat	Simple_repeat	chr18	10181791	10181793	-	ENSMUST00000234734.1,ENSMUSG00000024290.9	Rock1	ENSMUSG00000024290.9	ENSMUST00000234734.1	protein_coding	chr18:10106351-10181792
chr18	10216839	10217231	+	MTA_Mm	LTR	ERVL-MaLR	chr18	10217042	10217044	+	ENSMUST00000234829.1,ENSMUSG00000117492.1	AC102437.1	ENSMUSG00000117492.1	ENSMUST00000234829.1	transcribed_processed_pseudogene	chr18:10217043-10238921
chr18	10633744	10634144	+	MTB_Mm	LTR	ERVL-MaLR	chr18	10633959	10633961	+	ENSMUST00000234077.1,ENSMUSG00000002477.5	Snrpd1	ENSMUSG00000002477.5	ENSMUST00000234077.1	protein_coding	chr18:10633960-10642079
chr18	11052400	11052484	+	C-rich	Low_complexity	Low_complexity	chr18	11052469	11052471	+	ENSMUST00000047762.9,ENSMUSG00000005836.10	Gata6	ENSMUSG00000005836.10	ENSMUST00000047762.9	protein_coding	chr18:11052470-11085635
chr18	11844255	11844323	-	MIRc	SINE	MIR	chr18	11844299	11844301	+	ENSMUST00000225430.1,ENSMUSG00000040957.15	Cables1	ENSMUSG00000040957.15	ENSMUST00000225430.1	protein_coding	chr18:11844300-11945630
chr18	12128761	12128788	+	(CCG)n	Simple_repeat	Simple_repeat	chr18	12128773	12128775	+	ENSMUST00000234918.1,ENSMUSG00000024404.7	Riok3	ENSMUSG00000024404.7	ENSMUST00000234918.1	protein_coding	chr18:12128774-12130834
chr18	12128761	12128788	+	(CCG)n	Simple_repeat	Simple_repeat	chr18	12128779	12128781	+	ENSMUST00000234709.1,ENSMUSG00000024404.7	Riok3	ENSMUSG00000024404.7	ENSMUST00000234709.1	protein_coding	chr18:12128780-12137280
chr18	12128761	12128788	+	(CCG)n	Simple_repeat	Simple_repeat	chr18	12128779	12128781	+	ENSMUST00000234563.1,ENSMUSG00000024404.7	Riok3	ENSMUSG00000024404.7	ENSMUST00000234563.1	protein_coding	chr18:12128780-12137338
chr18	12147244	12147266	+	(T)n	Simple_repeat	Simple_repeat	chr18	12147247	12147249	+	ENSMUST00000235106.1,ENSMUSG00000024404.7	Riok3	ENSMUSG00000024404.7	ENSMUST00000235106.1	protein_coding	chr18:12147248-12151064
chr18	12163437	12163515	+	U4	snRNA	snRNA	chr18	12163437	12163439	+	ENSMUST00000122799.1,ENSMUSG00000084748.1	Gm25289	ENSMUSG00000084748.1	ENSMUST00000122799.1	snRNA	chr18:12163438-12163556
chr18	12193664	12193783	-	B1_Mus2	SINE	Alu	chr18	12193767	12193769	+	ENSMUST00000153352.1,ENSMUSG00000086935.1	Gm15956	ENSMUSG00000086935.1	ENSMUST00000153352.1	antisense	chr18:12193768-12198675
chr18	12212492	12212613	+	L1MC5a	LINE	L1	chr18	12212553	12212555	-	ENSMUST00000145771.1,ENSMUSG00000024413.14	Npc1	ENSMUSG00000024413.14	ENSMUST00000145771.1	protein_coding	chr18:12210384-12212554
chr18	12287290	12287405	+	MT2C_Mm	LTR	ERVL	chr18	12287403	12287405	+	ENSMUST00000119574.1,ENSMUSG00000082051.1	Gm16072	ENSMUSG00000082051.1	ENSMUST00000119574.1	processed_pseudogene	chr18:12287404-12289780
chr18	12578451	12578537	-	5S	rRNA	rRNA	chr18	12578536	12578538	-	ENSMUST00000157717.1,ENSMUSG00000088342.1	Gm22340	ENSMUSG00000088342.1	ENSMUST00000157717.1	rRNA	chr18:12578424-12578537
chr18	12714642	12714817	+	B3A	SINE	B2	chr18	12714810	12714812	+	ENSMUST00000157325.1,ENSMUSG00000087950.1	Mir1948	ENSMUSG00000087950.1	ENSMUST00000157325.1	miRNA	chr18:12714811-12714895
chr18	12879922	12880038	+	(CAGCC)n	Simple_repeat	Simple_repeat	chr18	12879976	12879978	-	ENSMUST00000119512.7,ENSMUSG00000044252.18	Osbpl1a	ENSMUSG00000044252.18	ENSMUST00000119512.7	protein_coding	chr18:12756192-12879977
chr18	13209701	13209808	-	U6	snRNA	snRNA	chr18	13209807	13209809	-	ENSMUST00000083216.1,ENSMUSG00000096288.1	Gm22251	ENSMUSG00000096288.1	ENSMUST00000083216.1	snRNA	chr18:13209702-13209808
chr18	13209808	13210828	-	L1_Mus1	LINE	L1	chr18	13209807	13209809	-	ENSMUST00000083216.1,ENSMUSG00000096288.1	Gm22251	ENSMUSG00000096288.1	ENSMUST00000083216.1	snRNA	chr18:13209702-13209808
chr18	13876210	13876652	+	L1MB2	LINE	L1	chr18	13876325	13876327	-	ENSMUST00000234523.1,ENSMUSG00000024420.9	Zfp521	ENSMUSG00000024420.9	ENSMUST00000234523.1	protein_coding	chr18:13846791-13876326
chr18	13903451	13903479	+	(A)n	Simple_repeat	Simple_repeat	chr18	13903469	13903471	-	ENSMUST00000234954.1,ENSMUSG00000117600.1	AC104328.1	ENSMUSG00000117600.1	ENSMUST00000234954.1	TEC	chr18:13900536-13903470
chr18	14647766	14647930	-	U1	snRNA	snRNA	chr18	14647929	14647931	-	ENSMUST00000084007.2,ENSMUSG00000094306.1	Gm24924	ENSMUSG00000094306.1	ENSMUST00000084007.2	snRNA	chr18:14647767-14647930
chr18	14670621	14671040	+	MTB_Mm	LTR	ERVL-MaLR	chr18	14670785	14670787	-	ENSMUST00000234737.1,ENSMUSG00000037013.16	Ss18	ENSMUSG00000037013.16	ENSMUST00000234737.1	protein_coding	chr18:14655091-14670786
chr18	15194676	15195086	-	MT2A	LTR	ERVL	chr18	15194781	15194783	+	ENSMUST00000235045.1,ENSMUSG00000117613.1	AC102342.2	ENSMUSG00000117613.1	ENSMUST00000235045.1	lincRNA	chr18:15194782-15214696
chr18	15207737	15207941	-	ID_B1	SINE	B4	chr18	15207790	15207792	-	ENSMUST00000234417.1,ENSMUSG00000117404.1	AC102342.1	ENSMUSG00000117404.1	ENSMUST00000234417.1	lincRNA	chr18:15201112-15207791
chr18	15409472	15409582	+	MER44D	DNA	TcMar-Tigger	chr18	15409493	15409495	-	ENSMUST00000234624.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000234624.1	protein_coding	chr18:15393390-15409494
chr18	15410254	15411184	-	RCHARR1	DNA	hAT-Charlie	chr18	15410981	15410983	-	ENSMUST00000235044.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000235044.1	protein_coding	chr18:15393390-15410982
chr18	15410254	15411184	-	RCHARR1	DNA	hAT-Charlie	chr18	15410981	15410983	-	ENSMUST00000234518.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000234518.1	protein_coding	chr18:15393390-15410982
chr18	15410254	15411184	-	RCHARR1	DNA	hAT-Charlie	chr18	15410981	15410983	-	ENSMUST00000234391.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000234391.1	protein_coding	chr18:15393390-15410982
chr18	15410254	15411184	-	RCHARR1	DNA	hAT-Charlie	chr18	15410981	15410983	-	ENSMUST00000234473.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000234473.1	protein_coding	chr18:15393391-15410982
chr18	15410254	15411184	-	RCHARR1	DNA	hAT-Charlie	chr18	15410981	15410983	-	ENSMUST00000234053.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000234053.1	protein_coding	chr18:15393391-15410982
chr18	15410254	15411184	-	RCHARR1	DNA	hAT-Charlie	chr18	15410928	15410930	-	ENSMUST00000234533.1,ENSMUSG00000024411.10	Aqp4	ENSMUSG00000024411.10	ENSMUST00000234533.1	protein_coding	chr18:15393470-15410929
chr18	16144400	16144882	-	RLTR45	LTR	ERVK	chr18	16144449	16144451	-	ENSMUST00000234268.1,ENSMUSG00000117532.1	AC138299.1	ENSMUSG00000117532.1	ENSMUST00000234268.1	lincRNA	chr18:16136887-16144450
chr18	16221365	16221685	+	Lx5c	LINE	L1	chr18	16221367	16221369	-	ENSMUST00000122694.1,ENSMUSG00000084643.1	Gm24385	ENSMUSG00000084643.1	ENSMUST00000122694.1	misc_RNA	chr18:16221019-16221368
chr18	16808427	16808480	+	(CAG)n	Simple_repeat	Simple_repeat	chr18	16808461	16808463	-	ENSMUST00000152779.1,ENSMUSG00000024304.14	Cdh2	ENSMUSG00000024304.14	ENSMUST00000152779.1	protein_coding	chr18:16771397-16808462
chr18	16815712	16815746	+	(T)n	Simple_repeat	Simple_repeat	chr18	16815720	16815722	+	ENSMUST00000209584.1,ENSMUSG00000086095.2	Gm15328	ENSMUSG00000086095.2	ENSMUST00000209584.1	lincRNA	chr18:16815721-16820447
chr18	16815712	16815746	+	(T)n	Simple_repeat	Simple_repeat	chr18	16815730	16815732	+	ENSMUST00000210330.1,ENSMUSG00000086095.2	Gm15328	ENSMUSG00000086095.2	ENSMUST00000210330.1	lincRNA	chr18:16815731-16820447
chr18	17018167	17019215	-	RMER17B	LTR	ERVK	chr18	17019050	17019052	+	ENSMUST00000147119.7,ENSMUSG00000087170.7	1700001G01Rik	ENSMUSG00000087170.7	ENSMUST00000147119.7	lincRNA	chr18:17019051-17137559
chr18	17018167	17019215	-	RMER17B	LTR	ERVK	chr18	17019075	17019077	+	ENSMUST00000153022.7,ENSMUSG00000087170.7	1700001G01Rik	ENSMUSG00000087170.7	ENSMUST00000153022.7	lincRNA	chr18:17019076-17047568
chr18	17035199	17035525	+	RMER1B	Other	Other	chr18	17035507	17035509	+	ENSMUST00000125117.1,ENSMUSG00000087170.7	1700001G01Rik	ENSMUSG00000087170.7	ENSMUST00000125117.1	lincRNA	chr18:17035508-17137559
chr18	17126571	17126910	-	7SK	RNA	RNA	chr18	17126801	17126803	-	ENSMUST00000157725.1,ENSMUSG00000088350.1	Gm24015	ENSMUSG00000088350.1	ENSMUST00000157725.1	misc_RNA	chr18:17126571-17126802
chr18	17319714	17319854	-	RLTR51A_Mm	LTR	ERVK?	chr18	17319729	17319731	-	ENSMUST00000234727.1,ENSMUSG00000117460.1	AC124548.1	ENSMUSG00000117460.1	ENSMUST00000234727.1	transcribed_processed_pseudogene	chr18:17234324-17319730
chr18	18099491	18099887	+	MTA_Mm	LTR	ERVL-MaLR	chr18	18099559	18099561	+	ENSMUST00000175533.1,ENSMUSG00000093274.1	Gm26235	ENSMUSG00000093274.1	ENSMUST00000175533.1	miRNA	chr18:18099560-18099660
chr18	18243883	18244215	+	IAPLTR3	LTR	ERVK	chr18	18244156	18244158	-	ENSMUST00000234831.1,ENSMUSG00000117574.1	AC127588.1	ENSMUSG00000117574.1	ENSMUST00000234831.1	lincRNA	chr18:18124541-18244157
chr18	19132856	19133303	+	RLTR31A_Mm	LTR	ERVK	chr18	19133216	19133218	+	ENSMUST00000234128.1,ENSMUSG00000117378.1	AC125133.1	ENSMUSG00000117378.1	ENSMUST00000234128.1	lincRNA	chr18:19133217-19201716
chr18	19554000	19559246	+	L1Md_T	LINE	L1	chr18	19554959	19554961	-	ENSMUST00000234553.1,ENSMUSG00000117407.1	AC122330.1	ENSMUSG00000117407.1	ENSMUST00000234553.1	transcribed_processed_pseudogene	chr18:19549778-19554960
chr18	19707091	19707325	+	7SK	RNA	RNA	chr18	19707092	19707094	+	ENSMUST00000157335.1,ENSMUSG00000087960.1	Gm25392	ENSMUSG00000087960.1	ENSMUST00000157335.1	misc_RNA	chr18:19707093-19707389
chr18	19856884	19856956	+	5S	rRNA	rRNA	chr18	19856884	19856886	+	ENSMUST00000157792.1,ENSMUSG00000088417.1	Gm24238	ENSMUSG00000088417.1	ENSMUST00000157792.1	rRNA	chr18:19856885-19856982
chr18	20832624	20832920	+	ORR1E	LTR	ERVL-MaLR	chr18	20832737	20832739	-	ENSMUST00000225502.1,ENSMUSG00000033382.15	Trappc8	ENSMUSG00000033382.15	ENSMUST00000225502.1	protein_coding	chr18:20829156-20832738
chr18	20844454	20844592	-	U1	snRNA	snRNA	chr18	20844591	20844593	-	ENSMUST00000157924.1,ENSMUSG00000088549.1	Gm24959	ENSMUSG00000088549.1	ENSMUST00000157924.1	snRNA	chr18:20844447-20844592
chr18	21001983	21002015	+	(CCA)n	Simple_repeat	Simple_repeat	chr18	21001990	21001992	+	ENSMUST00000052396.6,ENSMUSG00000024317.15	Rnf138	ENSMUSG00000024317.15	ENSMUST00000052396.6	protein_coding	chr18:21001991-21028224
chr18	21061907	21062283	+	MMERVK9C_I-int	LTR	ERVK	chr18	21061922	21061924	+	ENSMUST00000234367.1,ENSMUSG00000024313.8	Mep1b	ENSMUSG00000024313.8	ENSMUST00000234367.1	protein_coding	chr18:21061923-21084185
chr18	21302197	21302302	+	HY1	scRNA	scRNA	chr18	21302197	21302199	+	ENSMUST00000104400.1,ENSMUSG00000077588.1	Gm24372	ENSMUSG00000077588.1	ENSMUST00000104400.1	misc_RNA	chr18:21302198-21302307
chr18	23415477	23415516	-	L3b	LINE	CR1	chr18	23415476	23415478	+	ENSMUST00000221880.1,ENSMUSG00000024302.16	Dtna	ENSMUSG00000024302.16	ENSMUST00000221880.1	protein_coding	chr18:23415477-23635777
chr18	23415477	23415516	-	L3b	LINE	CR1	chr18	23415489	23415491	+	ENSMUST00000220904.1,ENSMUSG00000024302.16	Dtna	ENSMUSG00000024302.16	ENSMUST00000220904.1	protein_coding	chr18:23415490-23659706
chr18	23415477	23415516	-	L3b	LINE	CR1	chr18	23415509	23415511	+	ENSMUST00000047954.14,ENSMUSG00000024302.16	Dtna	ENSMUSG00000024302.16	ENSMUST00000047954.14	protein_coding	chr18:23415510-23604231
chr18	23817298	23817371	-	U6	snRNA	snRNA	chr18	23817370	23817372	-	ENSMUST00000158665.1,ENSMUSG00000089290.1	Gm23207	ENSMUSG00000089290.1	ENSMUST00000158665.1	snRNA	chr18:23817270-23817371
chr18	24114898	24115235	-	L1ME2z	LINE	L1	chr18	24114912	24114914	-	ENSMUST00000125169.1,ENSMUSG00000047989.11	Ino80c	ENSMUSG00000047989.11	ENSMUST00000125169.1	protein_coding	chr18:24106378-24114913
chr18	24238295	24238328	+	AT_rich	Low_complexity	Low_complexity	chr18	24238322	24238324	+	ENSMUST00000171583.1,ENSMUSG00000000420.15	Galnt1	ENSMUSG00000000420.15	ENSMUST00000171583.1	protein_coding	chr18:24238323-24267667
chr18	24339268	24339565	+	ORR1A3	LTR	ERVL-MaLR	chr18	24339365	24339367	+	ENSMUST00000234938.1,ENSMUSG00000117570.1	AC131109.1	ENSMUSG00000117570.1	ENSMUST00000234938.1	lincRNA	chr18:24339366-24344630
chr18	24558401	24558835	+	MT2_Mm	LTR	ERVL	chr18	24558601	24558603	+	ENSMUST00000116938.1,ENSMUSG00000095437.1	Gm23606	ENSMUSG00000095437.1	ENSMUST00000116938.1	miRNA	chr18:24558602-24558722
chr18	24709415	24709447	+	GC_rich	Low_complexity	Low_complexity	chr18	24709444	24709446	+	ENSMUST00000037097.8,ENSMUSG00000034295.10	Fhod3	ENSMUSG00000034295.10	ENSMUST00000037097.8	protein_coding	chr18:24709445-25133501
chr18	24709415	24709447	+	GC_rich	Low_complexity	Low_complexity	chr18	24709444	24709446	+	ENSMUST00000234526.1,ENSMUSG00000034295.10	Fhod3	ENSMUSG00000034295.10	ENSMUST00000234526.1	protein_coding	chr18:24709445-25133501
chr18	24709415	24709447	+	GC_rich	Low_complexity	Low_complexity	chr18	24709444	24709446	+	ENSMUST00000234834.1,ENSMUSG00000034295.10	Fhod3	ENSMUSG00000034295.10	ENSMUST00000234834.1	protein_coding	chr18:24709445-25133501
chr18	24761140	24761368	+	7SK	RNA	RNA	chr18	24761162	24761164	+	ENSMUST00000158295.1,ENSMUSG00000088920.1	Gm24294	ENSMUSG00000088920.1	ENSMUST00000158295.1	misc_RNA	chr18:24761163-24761439
chr18	25233720	25234112	+	MTA_Mm	LTR	ERVL-MaLR	chr18	25233914	25233916	+	ENSMUST00000100131.4,ENSMUSG00000033632.16	AW554918	ENSMUSG00000033632.16	ENSMUST00000100131.4	protein_coding	chr18:25233915-25464092
chr18	25598228	25598459	-	7SK	RNA	RNA	chr18	25598453	25598455	-	ENSMUST00000122588.1,ENSMUSG00000084537.1	Gm25845	ENSMUSG00000084537.1	ENSMUST00000122588.1	misc_RNA	chr18:25598145-25598454
chr18	25753701	25753854	+	(CA)n	Simple_repeat	Simple_repeat	chr18	25753749	25753751	-	ENSMUST00000025117.13,ENSMUSG00000024268.16	Celf4	ENSMUSG00000024268.16	ENSMUST00000025117.13	protein_coding	chr18:25478468-25753750
chr18	25753701	25753854	+	(CA)n	Simple_repeat	Simple_repeat	chr18	25753701	25753703	-	ENSMUST00000224553.1,ENSMUSG00000024268.16	Celf4	ENSMUSG00000024268.16	ENSMUST00000224553.1	protein_coding	chr18:25479473-25753702
chr18	25753900	25754052	+	(TC)n	Simple_repeat	Simple_repeat	chr18	25753982	25753984	-	ENSMUST00000115816.2,ENSMUSG00000024268.16	Celf4	ENSMUSG00000024268.16	ENSMUST00000115816.2	protein_coding	chr18:25477632-25753983
chr18	25753900	25754052	+	(TC)n	Simple_repeat	Simple_repeat	chr18	25753982	25753984	-	ENSMUST00000223704.1,ENSMUSG00000024268.16	Celf4	ENSMUSG00000024268.16	ENSMUST00000223704.1	protein_coding	chr18:25479078-25753983
chr18	25753900	25754052	+	(TC)n	Simple_repeat	Simple_repeat	chr18	25753952	25753954	-	ENSMUST00000224143.1,ENSMUSG00000024268.16	Celf4	ENSMUSG00000024268.16	ENSMUST00000224143.1	protein_coding	chr18:25676872-25753953
chr18	26006769	26007589	-	RLTR6-int	LTR	ERV1	chr18	26007556	26007558	+	ENSMUST00000234860.1,ENSMUSG00000117604.1	AC161438.1	ENSMUSG00000117604.1	ENSMUST00000234860.1	processed_transcript	chr18:26007557-26071336
chr18	26928327	26928736	+	Lx6	LINE	L1	chr18	26928328	26928330	-	ENSMUST00000157254.1,ENSMUSG00000087879.1	Gm26106	ENSMUSG00000087879.1	ENSMUST00000157254.1	ribozyme	chr18:26928102-26928329
chr18	27804522	27810941	-	L1Md_F2	LINE	L1	chr18	27809731	27809733	+	ENSMUST00000234286.1,ENSMUSG00000117467.1	AC164536.1	ENSMUSG00000117467.1	ENSMUST00000234286.1	lincRNA	chr18:27809732-27827685
chr18	28871641	28872267	-	Lx9	LINE	L1	chr18	28872215	28872217	+	ENSMUST00000234407.1,ENSMUSG00000117473.1	AC152397.1	ENSMUSG00000117473.1	ENSMUST00000234407.1	lincRNA	chr18:28872216-28937986
chr18	28871641	28872267	-	Lx9	LINE	L1	chr18	28872224	28872226	+	ENSMUST00000234160.1,ENSMUSG00000117473.1	AC152397.1	ENSMUSG00000117473.1	ENSMUST00000234160.1	lincRNA	chr18:28872225-28896987
chr18	29496314	29496550	+	Lx2A1	LINE	L1	chr18	29496415	29496417	-	ENSMUST00000234588.1,ENSMUSG00000117618.1	AC102549.2	ENSMUSG00000117618.1	ENSMUST00000234588.1	lincRNA	chr18:29396716-29496416
chr18	29496550	29496812	+	RLTR10B	LTR	ERVK	chr18	29496568	29496570	-	ENSMUST00000234290.1,ENSMUSG00000117618.1	AC102549.2	ENSMUSG00000117618.1	ENSMUST00000234290.1	lincRNA	chr18:29447824-29496569
chr18	30267211	30269257	+	RLTR4_MM-int	LTR	ERV1	chr18	30267248	30267250	+	ENSMUST00000234467.1,ENSMUSG00000117465.1	AC102496.1	ENSMUSG00000117465.1	ENSMUST00000234467.1	lincRNA	chr18:30267249-30272133
chr18	30475738	30476407	+	L1M2	LINE	L1	chr18	30476406	30476408	+	ENSMUST00000157501.1,ENSMUSG00000088126.1	Gm22870	ENSMUSG00000088126.1	ENSMUST00000157501.1	snoRNA	chr18:30476407-30476518
chr18	31389788	31390305	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr18	31390102	31390104	-	ENSMUST00000179362.1,ENSMUSG00000095685.1	Gm23283	ENSMUSG00000095685.1	ENSMUST00000179362.1	miRNA	chr18:31389994-31390103
chr18	31609488	31609519	+	GC_rich	Low_complexity	Low_complexity	chr18	31609511	31609513	+	ENSMUST00000164667.1,ENSMUSG00000092124.1	B930094E09Rik	ENSMUSG00000092124.1	ENSMUST00000164667.1	protein_coding	chr18:31609512-31610751
chr18	31861538	31861828	+	B4	SINE	B4	chr18	31861763	31861765	-	ENSMUST00000181425.1,ENSMUSG00000096926.1	Gm26823	ENSMUSG00000096926.1	ENSMUST00000181425.1	lincRNA	chr18:31859082-31861764
chr18	31882119	31882266	-	B1_Mm	SINE	Alu	chr18	31882141	31882143	+	ENSMUST00000234137.1,ENSMUSG00000024400.16	Wdr33	ENSMUSG00000024400.16	ENSMUST00000234137.1	protein_coding	chr18:31882142-31886370
chr18	31903881	31903964	-	B4A	SINE	B4	chr18	31903916	31903918	+	ENSMUST00000234937.1,ENSMUSG00000024400.16	Wdr33	ENSMUSG00000024400.16	ENSMUST00000234937.1	protein_coding	chr18:31903917-31906838
chr18	31911653	31911839	+	B3	SINE	B2	chr18	31911823	31911825	-	ENSMUST00000054984.7,ENSMUSG00000044982.7	Sft2d3	ENSMUSG00000044982.7	ENSMUST00000054984.7	protein_coding	chr18:31909098-31911824
chr18	32030943	32031091	+	ORR1B2-int	LTR	ERVL-MaLR	chr18	32031088	32031090	+	ENSMUST00000146065.1,ENSMUSG00000085300.1	Gm16345	ENSMUSG00000085300.1	ENSMUST00000146065.1	processed_pseudogene	chr18:32031089-32031246
chr18	32120383	32120498	-	B1_Mm	SINE	Alu	chr18	32120412	32120414	-	ENSMUST00000234068.1,ENSMUSG00000117650.1	AC127347.2	ENSMUSG00000117650.1	ENSMUST00000234068.1	lincRNA	chr18:32112460-32120413
chr18	32293349	32293486	+	7SK	RNA	RNA	chr18	32293349	32293351	+	ENSMUST00000158904.1,ENSMUSG00000089529.1	Gm22325	ENSMUSG00000089529.1	ENSMUST00000158904.1	misc_RNA	chr18:32293350-32293657
chr18	32377169	32377245	+	C-rich	Low_complexity	Low_complexity	chr18	32377229	32377231	+	ENSMUST00000234857.1,ENSMUSG00000024381.16	Bin1	ENSMUSG00000024381.16	ENSMUST00000234857.1	protein_coding	chr18:32377230-32435290
chr18	32377169	32377245	+	C-rich	Low_complexity	Low_complexity	chr18	32377244	32377246	+	ENSMUST00000234496.1,ENSMUSG00000024381.16	Bin1	ENSMUSG00000024381.16	ENSMUST00000234496.1	protein_coding	chr18:32377245-32435733
chr18	32377169	32377245	+	C-rich	Low_complexity	Low_complexity	chr18	32377244	32377246	+	ENSMUST00000091967.12,ENSMUSG00000024381.16	Bin1	ENSMUSG00000024381.16	ENSMUST00000091967.12	protein_coding	chr18:32377245-32435737
chr18	32472468	32472855	-	MTEa	LTR	ERVL-MaLR	chr18	32472588	32472590	-	ENSMUST00000207671.1,ENSMUSG00000109238.2	Gm35060	ENSMUSG00000109238.2	ENSMUST00000207671.1	protein_coding	chr18:32458083-32472589
chr18	32820692	32820799	+	U6	snRNA	snRNA	chr18	32820692	32820694	+	ENSMUST00000179093.1,ENSMUSG00000095233.1	Gm26378	ENSMUSG00000095233.1	ENSMUST00000179093.1	snRNA	chr18:32820693-32820799
chr18	32934851	32935042	-	MLT1F	LTR	ERVL-MaLR	chr18	32934930	32934932	+	ENSMUST00000234205.1,ENSMUSG00000038128.7	Camk4	ENSMUSG00000038128.7	ENSMUST00000234205.1	protein_coding	chr18:32934931-33191228
chr18	32934851	32935042	-	MLT1F	LTR	ERVL-MaLR	chr18	32934971	32934973	+	ENSMUST00000234654.1,ENSMUSG00000038128.7	Camk4	ENSMUSG00000038128.7	ENSMUST00000234654.1	protein_coding	chr18:32934972-33191228
chr18	33004669	33004766	-	U6	snRNA	snRNA	chr18	33004765	33004767	-	ENSMUST00000157452.1,ENSMUSG00000088077.1	Gm22814	ENSMUSG00000088077.1	ENSMUST00000157452.1	snRNA	chr18:33004663-33004766
chr18	34024073	34024457	-	RLTR25B	LTR	ERVK	chr18	34024279	34024281	-	ENSMUST00000157876.1,ENSMUSG00000088501.1	Gm22788	ENSMUSG00000088501.1	ENSMUST00000157876.1	snRNA	chr18:34024220-34024280
chr18	34093379	34093461	+	B3	SINE	B2	chr18	34093444	34093446	+	ENSMUST00000104075.1,ENSMUSG00000077263.1	Gm24432	ENSMUSG00000077263.1	ENSMUST00000104075.1	snoRNA	chr18:34093445-34093570
chr18	34188747	34189063	-	RLTR25B	LTR	ERVK	chr18	34188938	34188940	-	ENSMUST00000157988.2,ENSMUSG00000096804.1	Gm23411	ENSMUSG00000096804.1	ENSMUST00000157988.2	snRNA	chr18:34188878-34188939
chr18	34373382	34373415	+	GC_rich	Low_complexity	Low_complexity	chr18	34373414	34373416	-	ENSMUST00000006027.5,ENSMUSG00000005873.5	Reep5	ENSMUSG00000005873.5	ENSMUST00000006027.5	protein_coding	chr18:34344889-34373415
chr18	34509736	34509855	+	5S	rRNA	rRNA	chr18	34509736	34509738	+	ENSMUST00000122518.1,ENSMUSG00000084467.1	n-R5s24	ENSMUSG00000084467.1	ENSMUST00000122518.1	rRNA	chr18:34509737-34509853
chr18	34597323	34597411	-	B3A	SINE	B2	chr18	34597344	34597346	-	ENSMUST00000129566.1,ENSMUSG00000049357.11	4933408B17Rik	ENSMUSG00000049357.11	ENSMUST00000129566.1	protein_coding	chr18:34579945-34597345
chr18	34637860	34637969	-	PB1D9	SINE	Alu	chr18	34637870	34637872	-	ENSMUST00000155307.1,ENSMUSG00000024370.16	Cdc23	ENSMUSG00000024370.16	ENSMUST00000155307.1	protein_coding	chr18:34637059-34637871
chr18	34645268	34645354	+	L1MC4	LINE	L1	chr18	34645318	34645320	-	ENSMUST00000136943.1,ENSMUSG00000024370.16	Cdc23	ENSMUSG00000024370.16	ENSMUST00000136943.1	protein_coding	chr18:34641383-34645319
chr18	34647399	34647520	+	5S	rRNA	rRNA	chr18	34647399	34647401	+	ENSMUST00000082923.1,ENSMUSG00000064857.1	n-R5s25	ENSMUSG00000064857.1	ENSMUST00000082923.1	rRNA	chr18:34647400-34647518
chr18	34736349	34736397	-	PB1D9	SINE	Alu	chr18	34736358	34736360	+	ENSMUST00000105038.2,ENSMUSG00000078240.2	Gm3550	ENSMUSG00000078240.2	ENSMUST00000105038.2	protein_coding	chr18:34736359-34738014
chr18	34825814	34825838	+	(T)n	Simple_repeat	Simple_repeat	chr18	34825835	34825837	+	ENSMUST00000223567.1,ENSMUSG00000038773.11	Kdm3b	ENSMUSG00000038773.11	ENSMUST00000223567.1	protein_coding	chr18:34825836-34838258
chr18	35771542	35771580	+	GC_rich	Low_complexity	Low_complexity	chr18	35771558	35771560	+	ENSMUST00000170693.7,ENSMUSG00000091896.7	Ube2d2a	ENSMUSG00000091896.7	ENSMUST00000170693.7	protein_coding	chr18:35771559-35807172
chr18	35964961	35965065	+	C-rich	Low_complexity	Low_complexity	chr18	35965064	35965066	+	ENSMUST00000176873.7,ENSMUSG00000024347.16	Psd2	ENSMUSG00000024347.16	ENSMUST00000176873.7	protein_coding	chr18:35965065-36014712
chr18	36606055	36606512	-	Lx8	LINE	L1	chr18	36606192	36606194	+	ENSMUST00000142780.1,ENSMUSG00000024483.18	Ankhd1	ENSMUSG00000024483.18	ENSMUST00000142780.1	protein_coding	chr18:36606193-36634369
chr18	36641259	36641373	+	ID_B1	SINE	B4	chr18	36641372	36641374	+	ENSMUST00000152940.1,ENSMUSG00000024483.18	Ankhd1	ENSMUSG00000024483.18	ENSMUST00000152940.1	protein_coding	chr18:36641373-36644270
chr18	36786890	36787091	+	URR1A	DNA	hAT-Charlie	chr18	36787013	36787015	+	ENSMUST00000131952.1,ENSMUSG00000019143.15	Hars2	ENSMUSG00000019143.15	ENSMUST00000131952.1	protein_coding	chr18:36787014-36788262
chr18	36787747	36787872	-	B1_Mur2	SINE	Alu	chr18	36787819	36787821	+	ENSMUST00000155842.1,ENSMUSG00000019143.15	Hars2	ENSMUSG00000019143.15	ENSMUST00000155842.1	protein_coding	chr18:36787820-36790159
chr18	36789993	36790086	-	PB1D7	SINE	Alu	chr18	36790012	36790014	+	ENSMUST00000124204.1,ENSMUSG00000019143.15	Hars2	ENSMUSG00000019143.15	ENSMUST00000124204.1	protein_coding	chr18:36790013-36791453
chr18	36810688	36811207	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr18	36810890	36810892	+	ENSMUST00000103889.2,ENSMUSG00000095604.1	Gm23424	ENSMUSG00000095604.1	ENSMUST00000103889.2	miRNA	chr18:36810891-36811000
chr18	37079643	37080053	+	ORR1E-int	LTR	ERVL-MaLR	chr18	37079993	37079995	+	ENSMUST00000193299.1,ENSMUSG00000102232.1	Gm19035	ENSMUSG00000102232.1	ENSMUST00000193299.1	transcribed_processed_pseudogene	chr18:37079994-37081735
chr18	37178507	37178528	+	(GCTG)n	Simple_repeat	Simple_repeat	chr18	37178521	37178523	-	ENSMUST00000180516.2,ENSMUSG00000097430.2	Gm10544	ENSMUSG00000097430.2	ENSMUST00000180516.2	processed_transcript	chr18:37159854-37178522
chr18	37178507	37178528	+	(GCTG)n	Simple_repeat	Simple_repeat	chr18	37178513	37178515	-	ENSMUST00000192479.1,ENSMUSG00000097430.2	Gm10544	ENSMUSG00000097430.2	ENSMUST00000192479.1	processed_transcript	chr18:37176757-37178514
chr18	37618812	37619270	+	RLTR31M	LTR	ERVK	chr18	37618905	37618907	+	ENSMUST00000191880.1,ENSMUSG00000104225.1	4930517L18Rik	ENSMUSG00000104225.1	ENSMUST00000191880.1	lincRNA	chr18:37618906-37619766
chr18	37653916	37654424	-	RMER2	LTR	ERV1	chr18	37654171	37654173	-	ENSMUST00000193029.1,ENSMUSG00000102827.1	Gm8242	ENSMUSG00000102827.1	ENSMUST00000193029.1	transcribed_processed_pseudogene	chr18:37652753-37654172
chr18	37897927	37898018	+	L1MC5a	LINE	L1	chr18	37897941	37897943	-	ENSMUST00000129688.1,ENSMUSG00000024456.16	Diaph1	ENSMUSG00000024456.16	ENSMUST00000129688.1	protein_coding	chr18:37896157-37897942
chr18	38212030	38212092	+	C-rich	Low_complexity	Low_complexity	chr18	38212052	38212054	-	ENSMUST00000160721.7,ENSMUSG00000051375.15	Pcdh1	ENSMUSG00000051375.15	ENSMUST00000160721.7	protein_coding	chr18:38185914-38212053
chr18	38297939	38298040	+	U6	snRNA	snRNA	chr18	38297938	38297940	+	ENSMUST00000158671.1,ENSMUSG00000089296.1	Gm23205	ENSMUSG00000089296.1	ENSMUST00000158671.1	snRNA	chr18:38297939-38298041
chr18	38356577	38356656	+	5S	rRNA	rRNA	chr18	38356577	38356579	+	ENSMUST00000157759.1,ENSMUSG00000088384.1	Gm24690	ENSMUSG00000088384.1	ENSMUST00000157759.1	rRNA	chr18:38356578-38356674
chr18	38601588	38601616	+	(T)n	Simple_repeat	Simple_repeat	chr18	38601602	38601604	+	ENSMUST00000127448.7,ENSMUSG00000036452.17	Arhgap26	ENSMUSG00000036452.17	ENSMUST00000127448.7	protein_coding	chr18:38601603-38789045
chr18	38676494	38676730	-	L1M3	LINE	L1	chr18	38676717	38676719	+	ENSMUST00000134388.1,ENSMUSG00000036452.17	Arhgap26	ENSMUSG00000036452.17	ENSMUST00000134388.1	protein_coding	chr18:38676718-38775996
chr18	38676494	38676730	-	L1M3	LINE	L1	chr18	38676717	38676719	+	ENSMUST00000148850.7,ENSMUSG00000036452.17	Arhgap26	ENSMUSG00000036452.17	ENSMUST00000148850.7	protein_coding	chr18:38676718-39110534
chr18	38866679	38867146	+	L2b	LINE	L2	chr18	38866746	38866748	-	ENSMUST00000115582.7,ENSMUSG00000036585.15	Fgf1	ENSMUSG00000036585.15	ENSMUST00000115582.7	protein_coding	chr18:38840177-38866747
chr18	38892244	38892651	+	MTA_Mm	LTR	ERVL-MaLR	chr18	38892457	38892459	+	ENSMUST00000115580.1,ENSMUSG00000036452.17	Arhgap26	ENSMUSG00000036452.17	ENSMUST00000115580.1	protein_coding	chr18:38892458-38971272
chr18	40801232	40801467	-	7SK	RNA	RNA	chr18	40801464	40801466	-	ENSMUST00000158273.1,ENSMUSG00000088898.1	Gm22515	ENSMUSG00000088898.1	ENSMUST00000158273.1	misc_RNA	chr18:40801161-40801465
chr18	41342278	41342449	+	MER5A	DNA	hAT-Charlie	chr18	41342370	41342372	-	ENSMUST00000196225.1,ENSMUSG00000105169.1	Gm44476	ENSMUSG00000105169.1	ENSMUST00000196225.1	miRNA	chr18:41342281-41342371
chr18	42141892	42141957	+	L3	LINE	CR1	chr18	42141896	42141898	+	ENSMUST00000132681.7,ENSMUSG00000057719.10	Sh3rf2	ENSMUSG00000057719.10	ENSMUST00000132681.7	protein_coding	chr18:42141897-42156126
chr18	42574188	42574488	-	LFSINE_Vert	SINE	tRNA	chr18	42574208	42574210	+	ENSMUST00000184771.1,ENSMUSG00000099024.1	Gm27457	ENSMUSG00000099024.1	ENSMUST00000184771.1	misc_RNA	chr18:42574209-42574364
chr18	42899479	42899508	+	(CTG)n	Simple_repeat	Simple_repeat	chr18	42899502	42899504	-	ENSMUST00000136118.7,ENSMUSG00000024500.18	Ppp2r2b	ENSMUSG00000024500.18	ENSMUST00000136118.7	protein_coding	chr18:42637432-42899503
chr18	43373018	43373363	+	MT2A	LTR	ERVL	chr18	43373271	43373273	-	ENSMUST00000118043.7,ENSMUSG00000024501.19	Dpysl3	ENSMUSG00000024501.19	ENSMUST00000118043.7	protein_coding	chr18:43324227-43373272
chr18	43761150	43761382	+	7SK	RNA	RNA	chr18	43761150	43761152	+	ENSMUST00000158107.1,ENSMUSG00000088732.1	Gm23894	ENSMUSG00000088732.1	ENSMUST00000158107.1	misc_RNA	chr18:43761151-43761463
chr18	44827733	44827860	-	B1_Mur4	SINE	Alu	chr18	44827745	44827747	+	ENSMUST00000037763.10,ENSMUSG00000034653.11	Ythdc2	ENSMUSG00000034653.11	ENSMUST00000037763.10	protein_coding	chr18:44827746-44889717
chr18	46367164	46367598	+	MT2_Mm	LTR	ERVL	chr18	46367364	46367366	+	ENSMUST00000116705.1,ENSMUSG00000095541.1	Gm24617	ENSMUSG00000095541.1	ENSMUST00000116705.1	miRNA	chr18:46367365-46367485
chr18	46473934	46474028	-	U6	snRNA	snRNA	chr18	46474023	46474025	-	ENSMUST00000158179.1,ENSMUSG00000088804.1	Gm24076	ENSMUSG00000088804.1	ENSMUST00000158179.1	snRNA	chr18:46473931-46474024
chr18	46741837	46741918	+	GC_rich	Low_complexity	Low_complexity	chr18	46741875	46741877	+	ENSMUST00000025357.8,ENSMUSG00000024480.9	Ap3s1	ENSMUSG00000024480.9	ENSMUST00000025357.8	protein_coding	chr18:46741876-46790826
chr18	46741837	46741918	+	GC_rich	Low_complexity	Low_complexity	chr18	46741897	46741899	+	ENSMUST00000225520.1,ENSMUSG00000024480.9	Ap3s1	ENSMUSG00000024480.9	ENSMUST00000225520.1	protein_coding	chr18:46741898-46784147
chr18	46741837	46741918	+	GC_rich	Low_complexity	Low_complexity	chr18	46741912	46741914	+	ENSMUST00000226108.1,ENSMUSG00000024480.9	Ap3s1	ENSMUSG00000024480.9	ENSMUST00000226108.1	protein_coding	chr18:46741913-46789997
chr18	46762395	46768432	-	L1Md_F2	LINE	L1	chr18	46765213	46765215	+	ENSMUST00000234242.1,ENSMUSG00000117599.1	AC123927.3	ENSMUSG00000117599.1	ENSMUST00000234242.1	TEC	chr18:46765214-46770108
chr18	46900800	46900907	+	U6	snRNA	snRNA	chr18	46900800	46900802	+	ENSMUST00000178659.1,ENSMUSG00000094292.1	Gm23610	ENSMUSG00000094292.1	ENSMUST00000178659.1	snRNA	chr18:46900801-46900907
chr18	46921645	46921972	+	ORR1E	LTR	ERVL-MaLR	chr18	46921814	46921816	+	ENSMUST00000234910.1,ENSMUSG00000073568.2	Arl14epl	ENSMUSG00000073568.2	ENSMUST00000234910.1	protein_coding	chr18:46921815-46934232
chr18	46985462	46985669	-	ID_B1	SINE	B4	chr18	46985480	46985482	-	ENSMUST00000157232.1,ENSMUSG00000087857.1	Gm22791	ENSMUSG00000087857.1	ENSMUST00000157232.1	snoRNA	chr18:46985337-46985481
chr18	47106884	47107119	-	L1ME2	LINE	L1	chr18	47106914	47106916	+	ENSMUST00000234664.1,ENSMUSG00000042705.9	Commd10	ENSMUSG00000042705.9	ENSMUST00000234664.1	protein_coding	chr18:47106915-47109367
chr18	47154373	47154439	+	(CGG)n	Simple_repeat	Simple_repeat	chr18	47154372	47154374	+	ENSMUST00000175417.1,ENSMUSG00000093158.1	Gm25036	ENSMUSG00000093158.1	ENSMUST00000175417.1	miRNA	chr18:47154373-47154422
chr18	47452552	47452864	+	ORR1A2	LTR	ERVL-MaLR	chr18	47452667	47452669	+	ENSMUST00000235070.1,ENSMUSG00000117602.1	AC141639.2	ENSMUSG00000117602.1	ENSMUST00000235070.1	lincRNA	chr18:47452668-47470868
chr18	47452552	47452864	+	ORR1A2	LTR	ERVL-MaLR	chr18	47452694	47452696	+	ENSMUST00000234865.1,ENSMUSG00000117602.1	AC141639.2	ENSMUSG00000117602.1	ENSMUST00000234865.1	lincRNA	chr18:47452695-47476331
chr18	48045068	48045353	-	RLTR51A_Mm	LTR	ERVK?	chr18	48045334	48045336	+	ENSMUST00000076155.4,ENSMUSG00000059040.4	Eno1b	ENSMUSG00000059040.4	ENSMUST00000076155.4	protein_coding	chr18:48045335-48048378
chr18	49523209	49523342	-	RMER17D	LTR	ERVK	chr18	49523288	49523290	+	ENSMUST00000190201.1,ENSMUSG00000100297.1	1700044K03Rik	ENSMUSG00000100297.1	ENSMUST00000190201.1	lincRNA	chr18:49523289-49524440
chr18	49581790	49581849	-	U1	snRNA	snRNA	chr18	49581848	49581850	-	ENSMUST00000158279.1,ENSMUSG00000088904.1	Gm25440	ENSMUSG00000088904.1	ENSMUST00000158279.1	snRNA	chr18:49581696-49581849
chr18	50019495	50019621	+	MER5B	DNA	hAT-Charlie	chr18	50019566	50019568	+	ENSMUST00000126666.2,ENSMUSG00000062210.13	Tnfaip8	ENSMUSG00000062210.13	ENSMUST00000126666.2	protein_coding	chr18:50019567-50090794
chr18	51254168	51254275	-	U6	snRNA	snRNA	chr18	51254274	51254276	-	ENSMUST00000082886.1,ENSMUSG00000095482.1	Gm25739	ENSMUSG00000095482.1	ENSMUST00000082886.1	snRNA	chr18:51254169-51254275
chr18	51607663	51607937	-	L1Md_F2	LINE	L1	chr18	51607667	51607669	-	ENSMUST00000104129.1,ENSMUSG00000077317.1	Gm25785	ENSMUSG00000077317.1	ENSMUST00000104129.1	snRNA	chr18:51607544-51607668
chr18	52154500	52154607	-	U6	snRNA	snRNA	chr18	52154606	52154608	-	ENSMUST00000178926.1,ENSMUSG00000096863.1	Gm22259	ENSMUSG00000096863.1	ENSMUST00000178926.1	snRNA	chr18:52154501-52154607
chr18	52767989	52768096	+	G-rich	Low_complexity	Low_complexity	chr18	52767993	52767995	+	ENSMUST00000025413.13,ENSMUSG00000024534.15	Sncaip	ENSMUSG00000024534.15	ENSMUST00000025413.13	protein_coding	chr18:52767994-52915935
chr18	52767989	52768096	+	G-rich	Low_complexity	Low_complexity	chr18	52768089	52768091	+	ENSMUST00000163742.8,ENSMUSG00000024534.15	Sncaip	ENSMUSG00000024534.15	ENSMUST00000163742.8	protein_coding	chr18:52768090-52915742
chr18	53245630	53245665	+	GC_rich	Low_complexity	Low_complexity	chr18	53245661	53245663	+	ENSMUST00000165032.7,ENSMUSG00000024535.15	Snx24	ENSMUSG00000024535.15	ENSMUST00000165032.7	protein_coding	chr18:53245662-53390823
chr18	54990147	54990265	+	(GA)n	Simple_repeat	Simple_repeat	chr18	54990179	54990181	-	ENSMUST00000064763.5,ENSMUSG00000052713.8	Zfp608	ENSMUSG00000052713.8	ENSMUST00000064763.5	protein_coding	chr18:54888045-54990180
chr18	55179839	55179919	+	U6	snRNA	snRNA	chr18	55179839	55179841	+	ENSMUST00000157602.1,ENSMUSG00000088227.1	Gm22597	ENSMUSG00000088227.1	ENSMUST00000157602.1	snRNA	chr18:55179840-55179919
chr18	55622686	55622920	-	7SLRNA	srpRNA	srpRNA	chr18	55622919	55622921	-	ENSMUST00000174961.2,ENSMUSG00000092702.2	Gm24514	ENSMUSG00000092702.2	ENSMUST00000174961.2	misc_RNA	chr18:55622636-55622920
chr18	55966914	55966959	+	(CA)n	Simple_repeat	Simple_repeat	chr18	55966940	55966942	-	ENSMUST00000117021.3,ENSMUSG00000080671.3	Gm23335	ENSMUSG00000080671.3	ENSMUST00000117021.3	miRNA	chr18:55966852-55966941
chr18	56559394	56559542	+	B1_Mur4	SINE	Alu	chr18	56559421	56559423	-	ENSMUST00000171851.1,ENSMUSG00000053644.13	Aldh7a1	ENSMUSG00000053644.13	ENSMUST00000171851.1	protein_coding	chr18:56546920-56559422
chr18	56769487	56769874	+	ORR1B1	LTR	ERVL-MaLR	chr18	56769716	56769718	+	ENSMUST00000128240.1,ENSMUSG00000087597.1	Gm15345	ENSMUSG00000087597.1	ENSMUST00000128240.1	antisense	chr18:56769717-56801688
chr18	57669468	57669559	-	U6	snRNA	snRNA	chr18	57669557	57669559	-	ENSMUST00000158151.1,ENSMUSG00000088776.1	Gm26038	ENSMUSG00000088776.1	ENSMUST00000158151.1	snRNA	chr18:57669453-57669558
chr18	57681645	57681825	+	L1M2	LINE	L1	chr18	57681813	57681815	+	ENSMUST00000196794.1,ENSMUSG00000105951.1	Gm44491	ENSMUSG00000105951.1	ENSMUST00000196794.1	miRNA	chr18:57681814-57681909
chr18	58659439	58659488	+	GC_rich	Low_complexity	Low_complexity	chr18	58659481	58659483	+	ENSMUST00000025503.8,ENSMUSG00000024601.8	Isoc1	ENSMUSG00000024601.8	ENSMUST00000025503.8	protein_coding	chr18:58659482-58679570
chr18	60174111	60174631	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr18	60174316	60174318	+	ENSMUST00000179918.1,ENSMUSG00000094901.1	Gm23576	ENSMUSG00000094901.1	ENSMUST00000179918.1	miRNA	chr18:60174317-60174426
chr18	60803855	60803904	+	(CAG)n	Simple_repeat	Simple_repeat	chr18	60803855	60803857	+	ENSMUST00000167610.1,ENSMUSG00000024610.14	Cd74	ENSMUSG00000024610.14	ENSMUST00000167610.1	protein_coding	chr18:60803856-60812646
chr18	61200296	61200419	-	ID_B1	SINE	B4	chr18	61200368	61200370	-	ENSMUST00000037603.7,ENSMUSG00000034320.14	Slc26a2	ENSMUSG00000034320.14	ENSMUST00000037603.7	protein_coding	chr18:61197222-61200369
chr18	61397742	61397878	-	MIRc	SINE	MIR	chr18	61397812	61397814	+	ENSMUST00000175285.1,ENSMUSG00000093026.1	Gm25301	ENSMUSG00000093026.1	ENSMUST00000175285.1	miRNA	chr18:61397813-61397925
chr18	61397866	61398027	+	MIRc	SINE	MIR	chr18	61397899	61397901	-	ENSMUST00000198300.1,ENSMUSG00000105200.1	Mir378a	ENSMUSG00000105200.1	ENSMUST00000198300.1	miRNA	chr18:61397835-61397900
chr18	61400420	61400451	+	(CGAG)n	Simple_repeat	Simple_repeat	chr18	61400430	61400432	-	ENSMUST00000075299.12,ENSMUSG00000033871.14	Ppargc1b	ENSMUSG00000033871.14	ENSMUST00000075299.12	protein_coding	chr18:61298136-61400431
chr18	61467053	61467153	-	U6	snRNA	snRNA	chr18	61467152	61467154	-	ENSMUST00000158916.1,ENSMUSG00000089541.1	Gm25834	ENSMUSG00000089541.1	ENSMUST00000158916.1	snRNA	chr18:61467053-61467153
chr18	61582770	61582860	+	B4A	SINE	B4	chr18	61582843	61582845	+	ENSMUST00000170482.1,ENSMUSG00000024576.14	Csnk1a1	ENSMUSG00000024576.14	ENSMUST00000170482.1	protein_coding	chr18:61582844-61586498
chr18	62324151	62324213	+	G-rich	Low_complexity	Low_complexity	chr18	62324203	62324205	+	ENSMUST00000027560.6,ENSMUSG00000026322.8	Htr4	ENSMUSG00000026322.8	ENSMUST00000027560.6	protein_coding	chr18:62324204-62467802
chr18	62646174	62646420	+	MT2C_Mm	LTR	ERVL	chr18	62646254	62646256	+	ENSMUST00000160316.7,ENSMUSG00000044176.11	Spink10	ENSMUSG00000044176.11	ENSMUST00000160316.7	protein_coding	chr18:62646255-62658844
chr18	62662048	62662329	-	RMER5	LTR	ERV1	chr18	62662107	62662109	+	ENSMUST00000163259.1,ENSMUSG00000091744.1	Gm17732	ENSMUSG00000091744.1	ENSMUST00000163259.1	protein_coding	chr18:62662108-62662928
chr18	62980143	62980294	-	MER5A	DNA	hAT-Charlie	chr18	62980237	62980239	+	ENSMUST00000133593.1,ENSMUSG00000024581.12	Napg	ENSMUSG00000024581.12	ENSMUST00000133593.1	protein_coding	chr18:62980238-62983013
chr18	62985975	62986095	+	B1F	SINE	Alu	chr18	62986038	62986040	+	ENSMUST00000155440.7,ENSMUSG00000024581.12	Napg	ENSMUSG00000024581.12	ENSMUST00000155440.7	protein_coding	chr18:62986039-62994575
chr18	62987751	62988333	-	RLTR17	LTR	ERVK	chr18	62988209	62988211	+	ENSMUST00000124837.1,ENSMUSG00000024581.12	Napg	ENSMUSG00000024581.12	ENSMUST00000124837.1	protein_coding	chr18:62988210-62995024
chr18	63509888	63509960	+	5S	rRNA	rRNA	chr18	63509894	63509896	+	ENSMUST00000157332.1,ENSMUSG00000087957.1	Gm22560	ENSMUSG00000087957.1	ENSMUST00000157332.1	rRNA	chr18:63509895-63510014
chr18	63533046	63533068	+	AT_rich	Low_complexity	Low_complexity	chr18	63533067	63533069	+	ENSMUST00000158101.1,ENSMUSG00000088726.1	Gm22210	ENSMUSG00000088726.1	ENSMUST00000158101.1	snoRNA	chr18:63533068-63533211
chr18	63909081	63909156	-	U6	snRNA	snRNA	chr18	63909155	63909157	-	ENSMUST00000122693.1,ENSMUSG00000084642.1	Gm24384	ENSMUSG00000084642.1	ENSMUST00000122693.1	snRNA	chr18:63909082-63909156
chr18	64254275	64254422	+	B1_Mur2	SINE	Alu	chr18	64254358	64254360	+	ENSMUST00000025477.13,ENSMUSG00000056812.13	St8sia3	ENSMUSG00000056812.13	ENSMUST00000025477.13	protein_coding	chr18:64254359-64276146
chr18	64450003	64450084	+	ORR1A2	LTR	ERVL-MaLR	chr18	64450013	64450015	-	ENSMUST00000072796.4,ENSMUSG00000060096.4	Amd-ps3	ENSMUSG00000060096.4	ENSMUST00000072796.4	processed_pseudogene	chr18:64448519-64450014
chr18	64489066	64489098	+	GC_rich	Low_complexity	Low_complexity	chr18	64489065	64489067	-	ENSMUST00000025484.7,ENSMUSG00000024588.8	Fech	ENSMUSG00000024588.8	ENSMUST00000025484.7	protein_coding	chr18:64456550-64489066
chr18	64727762	64728285	+	RLTR25B	LTR	ERVK	chr18	64728065	64728067	+	ENSMUST00000158431.2,ENSMUSG00000095778.1	Gm23016	ENSMUSG00000095778.1	ENSMUST00000158431.2	snRNA	chr18:64728066-64728127
chr18	64887658	64887818	+	G-rich	Low_complexity	Low_complexity	chr18	64887704	64887706	+	ENSMUST00000225057.1,ENSMUSG00000024589.16	Nedd4l	ENSMUSG00000024589.16	ENSMUST00000225057.1	protein_coding	chr18:64887705-65155259
chr18	64887658	64887818	+	G-rich	Low_complexity	Low_complexity	chr18	64887755	64887757	+	ENSMUST00000163516.7,ENSMUSG00000024589.16	Nedd4l	ENSMUSG00000024589.16	ENSMUST00000163516.7	protein_coding	chr18:64887756-65217826
chr18	65427468	65427827	+	7SLRNA	srpRNA	srpRNA	chr18	65427468	65427470	+	ENSMUST00000175542.1,ENSMUSG00000093283.1	Gm22567	ENSMUSG00000093283.1	ENSMUST00000175542.1	misc_RNA	chr18:65427469-65427810
chr18	65907013	65908099	-	MLTR25A	LTR	ERVK	chr18	65907221	65907223	-	ENSMUST00000157121.1,ENSMUSG00000087746.1	Gm25150	ENSMUSG00000087746.1	ENSMUST00000157121.1	snRNA	chr18:65907163-65907222
chr18	66302455	66302776	+	MTEb	LTR	ERVL-MaLR	chr18	66302738	66302740	-	ENSMUST00000151343.1,ENSMUSG00000046318.15	Ccbe1	ENSMUSG00000046318.15	ENSMUST00000151343.1	protein_coding	chr18:66269028-66302739
chr18	66676352	66676588	+	7SK	RNA	RNA	chr18	66676360	66676362	+	ENSMUST00000157562.1,ENSMUSG00000088187.1	Gm22219	ENSMUSG00000088187.1	ENSMUST00000157562.1	misc_RNA	chr18:66676361-66676679
chr18	67174884	67174991	-	U6	snRNA	snRNA	chr18	67174990	67174992	-	ENSMUST00000180237.1,ENSMUSG00000095972.1	Gm23512	ENSMUSG00000095972.1	ENSMUST00000180237.1	snRNA	chr18:67174885-67174991
chr18	67203453	67203608	+	MIR	SINE	MIR	chr18	67203530	67203532	+	ENSMUST00000209359.1,ENSMUSG00000109901.1	Chmp1b	ENSMUSG00000109901.1	ENSMUST00000209359.1	protein_coding	chr18:67203531-67205970
chr18	67327760	67328127	-	ORR1G	LTR	ERVL-MaLR	chr18	67327970	67327972	-	ENSMUST00000144078.7,ENSMUSG00000046415.11	B430212C06Rik	ENSMUSG00000046415.11	ENSMUST00000144078.7	processed_transcript	chr18:67321209-67327971
chr18	67464846	67464875	+	GC_rich	Low_complexity	Low_complexity	chr18	67464848	67464850	+	ENSMUST00000025411.7,ENSMUSG00000024530.7	Prelid3a	ENSMUSG00000024530.7	ENSMUST00000025411.7	protein_coding	chr18:67464849-67480581
chr18	67610787	67610830	+	GC_rich	Low_complexity	Low_complexity	chr18	67610789	67610791	-	ENSMUST00000115050.8,ENSMUSG00000024533.16	Spire1	ENSMUSG00000024533.16	ENSMUST00000115050.8	protein_coding	chr18:67488209-67610790
chr18	67690179	67690252	-	ID4_	SINE	ID	chr18	67690223	67690225	-	ENSMUST00000128169.1,ENSMUSG00000024539.17	Ptpn2	ENSMUSG00000024539.17	ENSMUST00000128169.1	protein_coding	chr18:67675818-67690224
chr18	67774874	67774909	+	GC_rich	Low_complexity	Low_complexity	chr18	67774875	67774877	+	ENSMUST00000025421.7,ENSMUSG00000079614.3	Seh1l	ENSMUSG00000079614.3	ENSMUST00000025421.7	protein_coding	chr18:67774876-67795461
chr18	67850948	67851361	-	MTB_Mm	LTR	ERVL-MaLR	chr18	67851345	67851347	+	ENSMUST00000223571.1,ENSMUSG00000024542.9	Cep192	ENSMUSG00000024542.9	ENSMUST00000223571.1	protein_coding	chr18:67851346-67851801
chr18	68318857	68319000	-	B1F	SINE	Alu	chr18	68318996	68318998	+	ENSMUST00000148937.1,ENSMUSG00000009535.13	Rnmt	ENSMUSG00000009535.13	ENSMUST00000148937.1	protein_coding	chr18:68318997-68324851
chr18	68949926	68950209	+	Tigger17c	DNA	TcMar-Tigger	chr18	68950140	68950142	-	ENSMUST00000025428.5,ENSMUSG00000024546.5	4930546C10Rik	ENSMUSG00000024546.5	ENSMUST00000025428.5	protein_coding	chr18:68944633-68950141
chr18	69174035	69174123	-	5S	rRNA	rRNA	chr18	69174119	69174121	-	ENSMUST00000157541.1,ENSMUSG00000088166.1	Gm23536	ENSMUSG00000088166.1	ENSMUST00000157541.1	rRNA	chr18:69173987-69174120
chr18	69345688	69345733	+	(TG)n	Simple_repeat	Simple_repeat	chr18	69345718	69345720	+	ENSMUST00000202116.3,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000202116.3	protein_coding	chr18:69345719-69683390
chr18	69345688	69345733	+	(TG)n	Simple_repeat	Simple_repeat	chr18	69345720	69345722	+	ENSMUST00000114982.7,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000114982.7	protein_coding	chr18:69345721-69684526
chr18	69345688	69345733	+	(TG)n	Simple_repeat	Simple_repeat	chr18	69345720	69345722	+	ENSMUST00000078486.12,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000078486.12	protein_coding	chr18:69345721-69687967
chr18	69345733	69345817	-	IMPB_01	Satellite	Satellite	chr18	69345760	69345762	+	ENSMUST00000202772.3,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000202772.3	protein_coding	chr18:69345761-69683198
chr18	69345733	69345817	-	IMPB_01	Satellite	Satellite	chr18	69345762	69345764	+	ENSMUST00000201288.3,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000201288.3	protein_coding	chr18:69345763-69636838
chr18	69345733	69345817	-	IMPB_01	Satellite	Satellite	chr18	69345772	69345774	+	ENSMUST00000155695.4,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000155695.4	protein_coding	chr18:69345773-69487850
chr18	69348493	69348575	+	RLTR31D_MM	LTR	ERVK	chr18	69348522	69348524	+	ENSMUST00000202435.3,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000202435.3	protein_coding	chr18:69348523-69683449
chr18	69656516	69656674	+	(GGGA)n	Simple_repeat	Simple_repeat	chr18	69656666	69656668	+	ENSMUST00000201081.1,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000201081.1	protein_coding	chr18:69656667-69660291
chr18	69682342	69682471	-	B1F	SINE	Alu	chr18	69682379	69682381	+	ENSMUST00000136019.2,ENSMUSG00000053477.17	Tcf4	ENSMUSG00000053477.17	ENSMUST00000136019.2	protein_coding	chr18:69682380-69683633
chr18	69777939	69778045	-	HY1	scRNA	scRNA	chr18	69778044	69778046	-	ENSMUST00000082772.1,ENSMUSG00000064706.1	Gm22508	ENSMUSG00000064706.1	ENSMUST00000082772.1	misc_RNA	chr18:69777936-69778045
chr18	70464145	70464332	+	B3A	SINE	B2	chr18	70464149	70464151	-	ENSMUST00000213066.1,ENSMUSG00000044906.5	4930503L19Rik	ENSMUSG00000044906.5	ENSMUST00000213066.1	protein_coding	chr18:70452212-70464150
chr18	70488059	70494475	-	L1Md_A	LINE	L1	chr18	70493488	70493490	+	ENSMUST00000173612.1,ENSMUSG00000079608.10	Stard6	ENSMUSG00000079608.10	ENSMUST00000173612.1	protein_coding	chr18:70493489-70500642
chr18	70530516	70530721	-	B3A	SINE	B2	chr18	70530619	70530621	-	ENSMUST00000121674.8,ENSMUSG00000038425.17	Poli	ENSMUSG00000038425.17	ENSMUST00000121674.8	protein_coding	chr18:70508683-70530620
chr18	73533538	73533705	-	LTR10_RN	LTR	ERVK	chr18	73533549	73533551	-	ENSMUST00000083988.1,ENSMUSG00000065922.1	n-R5-8s1	ENSMUSG00000065922.1	ENSMUST00000083988.1	rRNA	chr18:73533403-73533550
chr18	73573023	73573089	-	MMERVK9C_I-int	LTR	ERVK	chr18	73573043	73573045	+	ENSMUST00000091852.4,ENSMUSG00000037253.8	Mex3c	ENSMUSG00000037253.8	ENSMUST00000091852.4	protein_coding	chr18:73573044-73592575
chr18	73611516	73611628	+	HY1	scRNA	scRNA	chr18	73611515	73611517	+	ENSMUST00000082593.1,ENSMUSG00000064527.1	Gm26438	ENSMUSG00000064527.1	ENSMUST00000082593.1	misc_RNA	chr18:73611516-73611622
chr18	73624717	73625237	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr18	73624927	73624929	+	ENSMUST00000103753.1,ENSMUSG00000076941.1	Gm22065	ENSMUSG00000076941.1	ENSMUST00000103753.1	miRNA	chr18:73624928-73625037
chr18	73642523	73642647	-	B3A	SINE	B2	chr18	73642562	73642564	-	ENSMUST00000131339.7,ENSMUSG00000024515.13	Smad4	ENSMUSG00000024515.13	ENSMUST00000131339.7	protein_coding	chr18:73640158-73642563
chr18	74017578	74017995	+	RLTR10C	LTR	ERVK	chr18	74017906	74017908	+	ENSMUST00000159260.1,ENSMUSG00000090263.1	D730045A05Rik	ENSMUSG00000090263.1	ENSMUST00000159260.1	lincRNA	chr18:74017907-74020088
chr18	74267225	74267774	+	RLTR6B_Mm	LTR	ERV1	chr18	74267604	74267606	+	ENSMUST00000224907.1,ENSMUSG00000024561.9	Mbd1	ENSMUSG00000024561.9	ENSMUST00000224907.1	protein_coding	chr18:74267605-74269922
chr18	74294816	74295062	-	MMVL30-int	LTR	ERV1	chr18	74294957	74294959	+	ENSMUST00000176766.1,ENSMUSG00000035394.11	Cfap53	ENSMUSG00000035394.11	ENSMUST00000176766.1	protein_coding	chr18:74294958-74300207
chr18	74348727	74349170	+	MERV1_LTR	LTR	ERV1	chr18	74348985	74348987	+	ENSMUST00000177407.1,ENSMUSG00000035394.11	Cfap53	ENSMUSG00000035394.11	ENSMUST00000177407.1	protein_coding	chr18:74348986-74359930
chr18	74531087	74531150	+	Tigger16a	DNA	TcMar-Tigger	chr18	74531123	74531125	-	ENSMUST00000152951.1,ENSMUSG00000086333.1	1700120E14Rik	ENSMUSG00000086333.1	ENSMUST00000152951.1	antisense	chr18:74525140-74531124
chr18	74531087	74531150	+	Tigger16a	DNA	TcMar-Tigger	chr18	74531105	74531107	-	ENSMUST00000137034.1,ENSMUSG00000086333.1	1700120E14Rik	ENSMUSG00000086333.1	ENSMUST00000137034.1	antisense	chr18:74525253-74531106
chr18	75023653	75023869	+	URR1B	DNA	hAT-Charlie	chr18	75023855	75023857	+	ENSMUST00000185185.1,ENSMUSG00000098305.1	Gm27781	ENSMUSG00000098305.1	ENSMUST00000185185.1	rRNA	chr18:75023856-75023947
chr18	76241683	76241763	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr18	76241700	76241702	+	ENSMUST00000091831.12,ENSMUSG00000024563.15	Smad2	ENSMUSG00000024563.15	ENSMUST00000091831.12	protein_coding	chr18:76241701-76304730
chr18	76241987	76242111	+	G-rich	Low_complexity	Low_complexity	chr18	76242045	76242047	+	ENSMUST00000171256.7,ENSMUSG00000024563.15	Smad2	ENSMUSG00000024563.15	ENSMUST00000171256.7	protein_coding	chr18:76242046-76298450
chr18	77564603	77564643	+	(TC)n	Simple_repeat	Simple_repeat	chr18	77564608	77564610	-	ENSMUST00000182294.1,ENSMUSG00000025427.14	Rnf165	ENSMUSG00000025427.14	ENSMUST00000182294.1	protein_coding	chr18:77562093-77564609
chr18	77565115	77565240	+	(CGG)n	Simple_repeat	Simple_repeat	chr18	77565135	77565137	-	ENSMUST00000026494.13,ENSMUSG00000025427.14	Rnf165	ENSMUSG00000025427.14	ENSMUST00000026494.13	protein_coding	chr18:77456110-77565136
chr18	77565115	77565240	+	(CGG)n	Simple_repeat	Simple_repeat	chr18	77565146	77565148	-	ENSMUST00000182024.1,ENSMUSG00000025427.14	Rnf165	ENSMUSG00000025427.14	ENSMUST00000182024.1	protein_coding	chr18:77458685-77565147
chr18	78533457	78533564	+	U6	snRNA	snRNA	chr18	78533457	78533459	+	ENSMUST00000178054.1,ENSMUSG00000095883.1	Gm26430	ENSMUSG00000095883.1	ENSMUST00000178054.1	snRNA	chr18:78533458-78533564
chr18	79109315	79109432	+	GC_rich	Low_complexity	Low_complexity	chr18	79109390	79109392	-	ENSMUST00000025430.10,ENSMUSG00000024548.11	Setbp1	ENSMUSG00000024548.11	ENSMUST00000025430.10	protein_coding	chr18:78750380-79109391
chr18	80046894	80046985	+	GC_rich	Low_complexity	Low_complexity	chr18	80046894	80046896	+	ENSMUST00000070219.7,ENSMUSG00000056214.8	Pard6g	ENSMUSG00000056214.8	ENSMUST00000070219.7	protein_coding	chr18:80046895-80119640
chr18	80252971	80253417	+	RLTR35B_MM	LTR	ERVL	chr18	80253291	80253293	+	ENSMUST00000131780.7,ENSMUSG00000034006.16	Pqlc1	ENSMUSG00000034006.16	ENSMUST00000131780.7	protein_coding	chr18:80253292-80292637
chr18	80252971	80253417	+	RLTR35B_MM	LTR	ERVL	chr18	80253341	80253343	+	ENSMUST00000157056.7,ENSMUSG00000034006.16	Pqlc1	ENSMUSG00000034006.16	ENSMUST00000157056.7	protein_coding	chr18:80253342-80283385
chr18	80302853	80303687	-	L1ME1	LINE	L1	chr18	80303679	80303681	-	ENSMUST00000192763.1,ENSMUSG00000102959.1	Gm37015	ENSMUSG00000102959.1	ENSMUST00000192763.1	TEC	chr18:80302160-80303680
chr18	80822013	80822424	+	MTB_Mm	LTR	ERVL-MaLR	chr18	80822246	80822248	+	ENSMUST00000225900.1,ENSMUSG00000114891.1	Gm47272	ENSMUSG00000114891.1	ENSMUST00000225900.1	antisense	chr18:80822247-80838491
chr18	80925732	80925818	+	RLTR17B_Mm	LTR	ERVK	chr18	80925804	80925806	-	ENSMUST00000175232.1,ENSMUSG00000092973.1	Gm25071	ENSMUSG00000092973.1	ENSMUST00000175232.1	miRNA	chr18:80925736-80925805
chr18	80934028	80934056	+	GC_rich	Low_complexity	Low_complexity	chr18	80934031	80934033	-	ENSMUST00000225205.1,ENSMUSG00000024566.9	Atp9b	ENSMUSG00000024566.9	ENSMUST00000225205.1	protein_coding	chr18:80764026-80934032
chr18	80934028	80934056	+	GC_rich	Low_complexity	Low_complexity	chr18	80934047	80934049	-	ENSMUST00000226064.1,ENSMUSG00000024566.9	Atp9b	ENSMUSG00000024566.9	ENSMUST00000226064.1	protein_coding	chr18:80765848-80934048
chr18	80986578	80986675	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr18	80986577	80986579	-	ENSMUST00000057950.7,ENSMUSG00000024565.8	Sall3	ENSMUSG00000024565.8	ENSMUST00000057950.7	protein_coding	chr18:80966376-80986578
chr18	80987441	80987507	+	C-rich	Low_complexity	Low_complexity	chr18	80987455	80987457	+	ENSMUST00000184638.1,ENSMUSG00000098720.1	Gm27239	ENSMUSG00000098720.1	ENSMUST00000184638.1	antisense	chr18:80987456-80988575
chr18	81026772	81026867	+	U6	snRNA	snRNA	chr18	81026772	81026774	+	ENSMUST00000158632.1,ENSMUSG00000089257.1	Gm25718	ENSMUSG00000089257.1	ENSMUST00000158632.1	snRNA	chr18:81026773-81026890
chr18	82692734	82692780	+	G-rich	Low_complexity	Low_complexity	chr18	82692733	82692735	-	ENSMUST00000182122.7,ENSMUSG00000041258.17	Zfp236	ENSMUSG00000041258.17	ENSMUST00000182122.7	protein_coding	chr18:82597155-82692734
chr18	82692734	82692780	+	G-rich	Low_complexity	Low_complexity	chr18	82692733	82692735	-	ENSMUST00000183048.7,ENSMUSG00000041258.17	Zfp236	ENSMUSG00000041258.17	ENSMUST00000183048.7	protein_coding	chr18:82597155-82692734
chr18	84934683	84935260	+	MT2B2	LTR	ERVL	chr18	84934781	84934783	+	ENSMUST00000224467.1,ENSMUSG00000034391.11	Fbxo15	ENSMUSG00000034391.11	ENSMUST00000224467.1	protein_coding	chr18:84934782-84981471
chr18	84934683	84935260	+	MT2B2	LTR	ERVL	chr18	84935027	84935029	+	ENSMUST00000225445.1,ENSMUSG00000034391.11	Fbxo15	ENSMUSG00000034391.11	ENSMUST00000225445.1	protein_coding	chr18:84935028-84981472
chr18	84934683	84935260	+	MT2B2	LTR	ERVL	chr18	84935157	84935159	+	ENSMUST00000037718.9,ENSMUSG00000034391.11	Fbxo15	ENSMUSG00000034391.11	ENSMUST00000037718.9	protein_coding	chr18:84935158-84981376
chr18	86349585	86349692	+	U6	snRNA	snRNA	chr18	86349585	86349587	+	ENSMUST00000082733.1,ENSMUSG00000094440.1	Gm25453	ENSMUSG00000094440.1	ENSMUST00000082733.1	snRNA	chr18:86349586-86349692
chr18	88886921	88887305	-	MTD	LTR	ERVL-MaLR	chr18	88887246	88887248	-	ENSMUST00000145120.1,ENSMUSG00000056153.14	Socs6	ENSMUSG00000056153.14	ENSMUST00000145120.1	protein_coding	chr18:88870250-88887247
chr18	88894216	88894260	+	CT-rich	Low_complexity	Low_complexity	chr18	88894215	88894217	-	ENSMUST00000123826.1,ENSMUSG00000056153.14	Socs6	ENSMUSG00000056153.14	ENSMUST00000123826.1	protein_coding	chr18:88868174-88894216
chr18	89732132	89733041	-	L1Md_F2	LINE	L1	chr18	89733004	89733006	+	ENSMUST00000175051.1,ENSMUSG00000092792.1	Gm22694	ENSMUSG00000092792.1	ENSMUST00000175051.1	miRNA	chr18:89733005-89733074
chr18	90228180	90229380	+	RLTR25A	LTR	ERVK	chr18	90228898	90228900	+	ENSMUST00000158383.1,ENSMUSG00000089008.1	Gm23859	ENSMUSG00000089008.1	ENSMUST00000158383.1	snRNA	chr18:90228899-90228962
chr19	3136983	3137090	-	U6	snRNA	snRNA	chr19	3137089	3137091	-	ENSMUST00000101978.1,ENSMUSG00000093983.1	Gm25431	ENSMUSG00000093983.1	ENSMUST00000101978.1	snRNA	chr19:3136984-3137090
chr19	3160129	3161367	+	ERVB4_1-I_MM-int	LTR	ERVK	chr19	3160189	3160191	-	ENSMUST00000189643.1,ENSMUSG00000100969.6	1700030N03Rik	ENSMUSG00000100969.6	ENSMUST00000189643.1	lincRNA	chr19:3145870-3160190
chr19	3160129	3161367	+	ERVB4_1-I_MM-int	LTR	ERVK	chr19	3160180	3160182	-	ENSMUST00000191405.6,ENSMUSG00000100969.6	1700030N03Rik	ENSMUSG00000100969.6	ENSMUST00000191405.6	lincRNA	chr19:3145946-3160181
chr19	3323224	3323334	+	C-rich	Low_complexity	Low_complexity	chr19	3323300	3323302	+	ENSMUST00000025835.4,ENSMUSG00000024900.4	Cpt1a	ENSMUSG00000024900.4	ENSMUST00000025835.4	protein_coding	chr19:3323301-3385732
chr19	3486024	3486207	+	B3	SINE	B2	chr19	3486089	3486091	+	ENSMUST00000224419.1,ENSMUSG00000114315.1	Gm48696	ENSMUSG00000114315.1	ENSMUST00000224419.1	processed_transcript	chr19:3486090-3488014
chr19	3490308	3490413	+	U6	snRNA	snRNA	chr19	3490308	3490310	+	ENSMUST00000101958.1,ENSMUSG00000075908.1	Gm23940	ENSMUSG00000075908.1	ENSMUST00000101958.1	snRNA	chr19:3490309-3490413
chr19	3527077	3527120	+	T-rich	Low_complexity	Low_complexity	chr19	3527103	3527105	+	ENSMUST00000223977.1,ENSMUSG00000114302.1	Gm48683	ENSMUSG00000114302.1	ENSMUST00000223977.1	antisense	chr19:3527104-3528613
chr19	3791604	3791786	-	B2_Mm1a	SINE	B2	chr19	3791719	3791721	+	ENSMUST00000135586.1,ENSMUSG00000045098.18	Kmt5b	ENSMUSG00000045098.18	ENSMUST00000135586.1	protein_coding	chr19:3791720-3799549
chr19	3891714	3891893	-	B3	SINE	B2	chr19	3891730	3891732	+	ENSMUST00000125013.1,ENSMUSG00000024843.15	Chka	ENSMUSG00000024843.15	ENSMUST00000125013.1	protein_coding	chr19:3891731-3893657
chr19	4078298	4078512	-	U3	snRNA	snRNA	chr19	4078511	4078513	-	ENSMUST00000199928.1,ENSMUSG00000104921.1	Gm23927	ENSMUSG00000104921.1	ENSMUST00000199928.1	snoRNA	chr19:4078297-4078512
chr19	4078298	4078512	-	U3	snRNA	snRNA	chr19	4078511	4078513	-	ENSMUST00000082466.2,ENSMUSG00000064400.2	Gm23927	ENSMUSG00000064400.2	ENSMUST00000082466.2	snoRNA	chr19:4078298-4078512
chr19	4078512	4078580	+	B3	SINE	B2	chr19	4078511	4078513	-	ENSMUST00000199928.1,ENSMUSG00000104921.1	Gm23927	ENSMUSG00000104921.1	ENSMUST00000199928.1	snoRNA	chr19:4078297-4078512
chr19	4078512	4078580	+	B3	SINE	B2	chr19	4078511	4078513	-	ENSMUST00000082466.2,ENSMUSG00000064400.2	Gm23927	ENSMUSG00000064400.2	ENSMUST00000082466.2	snoRNA	chr19:4078298-4078512
chr19	4109634	4109751	+	MT2B	LTR	ERVL	chr19	4109647	4109649	+	ENSMUST00000145915.1,ENSMUSG00000024851.13	Pitpnm1	ENSMUSG00000024851.13	ENSMUST00000145915.1	protein_coding	chr19:4109648-4110734
chr19	4109646	4109787	+	B1_Mur4	SINE	Alu	chr19	4109647	4109649	+	ENSMUST00000145915.1,ENSMUSG00000024851.13	Pitpnm1	ENSMUSG00000024851.13	ENSMUST00000145915.1	protein_coding	chr19:4109648-4110734
chr19	4215464	4215494	+	GC_rich	Low_complexity	Low_complexity	chr19	4215487	4215489	-	ENSMUST00000175605.1,ENSMUSG00000093346.1	Gm26115	ENSMUSG00000093346.1	ENSMUST00000175605.1	miRNA	chr19:4215402-4215488
chr19	4439374	4439515	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr19	4439431	4439433	-	ENSMUST00000048197.9,ENSMUSG00000041845.10	Rhod	ENSMUSG00000041845.10	ENSMUST00000048197.9	protein_coding	chr19:4425459-4439432
chr19	4439374	4439515	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr19	4439420	4439422	-	ENSMUST00000117462.1,ENSMUSG00000041845.10	Rhod	ENSMUSG00000041845.10	ENSMUST00000117462.1	protein_coding	chr19:4425667-4439421
chr19	4443689	4443806	-	MIR3	SINE	MIR	chr19	4443737	4443739	+	ENSMUST00000132579.1,ENSMUSG00000087132.7	A930001C03Rik	ENSMUSG00000087132.7	ENSMUST00000132579.1	processed_transcript	chr19:4443738-4447863
chr19	4477415	4477453	+	MIR3	SINE	MIR	chr19	4477446	4477448	-	ENSMUST00000059295.9,ENSMUSG00000049303.10	Syt12	ENSMUSG00000049303.10	ENSMUST00000059295.9	protein_coding	chr19:4445908-4477447
chr19	4477419	4477454	+	MIRc	SINE	MIR	chr19	4477446	4477448	-	ENSMUST00000059295.9,ENSMUSG00000049303.10	Syt12	ENSMUSG00000049303.10	ENSMUST00000059295.9	protein_coding	chr19:4445908-4477447
chr19	4904673	4904778	+	U6	snRNA	snRNA	chr19	4904672	4904674	+	ENSMUST00000158036.1,ENSMUSG00000088661.1	Gm25334	ENSMUSG00000088661.1	ENSMUST00000158036.1	snRNA	chr19:4904673-4904782
chr19	5085520	5085548	+	GC_rich	Low_complexity	Low_complexity	chr19	5085530	5085532	-	ENSMUST00000077066.7,ENSMUSG00000061451.13	Tmem151a	ENSMUSG00000061451.13	ENSMUST00000077066.7	protein_coding	chr19:5079330-5085531
chr19	5201296	5201394	+	A-rich	Low_complexity	Low_complexity	chr19	5201302	5201304	-	ENSMUST00000183577.1,ENSMUSG00000098803.1	Gm27468	ENSMUSG00000098803.1	ENSMUST00000183577.1	miRNA	chr19:5201198-5201303
chr19	5298308	5298331	+	(AGCTG)n	Simple_repeat	Simple_repeat	chr19	5298330	5298332	+	ENSMUST00000061169.6,ENSMUSG00000047658.6	Gal3st3	ENSMUSG00000047658.6	ENSMUST00000061169.6	protein_coding	chr19:5298331-5308738
chr19	5406362	5406822	-	IAPLTR2_Mm	LTR	ERVK	chr19	5406739	5406741	+	ENSMUST00000174415.1,ENSMUSG00000086938.8	4930481A15Rik	ENSMUSG00000086938.8	ENSMUST00000174415.1	antisense	chr19:5406740-5415021
chr19	5406362	5406822	-	IAPLTR2_Mm	LTR	ERVK	chr19	5406761	5406763	+	ENSMUST00000174754.7,ENSMUSG00000086938.8	4930481A15Rik	ENSMUSG00000086938.8	ENSMUST00000174754.7	antisense	chr19:5406762-5417580
chr19	5406362	5406822	-	IAPLTR2_Mm	LTR	ERVK	chr19	5406814	5406816	+	ENSMUST00000174412.7,ENSMUSG00000086938.8	4930481A15Rik	ENSMUSG00000086938.8	ENSMUST00000174412.7	antisense	chr19:5406815-5417683
chr19	5406362	5406822	-	IAPLTR2_Mm	LTR	ERVK	chr19	5406821	5406823	+	ENSMUST00000153017.6,ENSMUSG00000086938.8	4930481A15Rik	ENSMUSG00000086938.8	ENSMUST00000153017.6	antisense	chr19:5406822-5417587
chr19	5406822	5406935	-	B1_Mus2	SINE	Alu	chr19	5406821	5406823	+	ENSMUST00000153017.6,ENSMUSG00000086938.8	4930481A15Rik	ENSMUSG00000086938.8	ENSMUST00000153017.6	antisense	chr19:5406822-5417587
chr19	5406822	5406935	-	B1_Mus2	SINE	Alu	chr19	5406873	5406875	+	ENSMUST00000128542.2,ENSMUSG00000086938.8	4930481A15Rik	ENSMUSG00000086938.8	ENSMUST00000128542.2	antisense	chr19:5406874-5422847
chr19	5424730	5424809	+	GC_rich	Low_complexity	Low_complexity	chr19	5424758	5424760	-	ENSMUST00000148219.8,ENSMUSG00000024914.16	Drap1	ENSMUSG00000024914.16	ENSMUST00000148219.8	protein_coding	chr19:5422806-5424759
chr19	5424730	5424809	+	GC_rich	Low_complexity	Low_complexity	chr19	5424786	5424788	-	ENSMUST00000126908.8,ENSMUSG00000024914.16	Drap1	ENSMUSG00000024914.16	ENSMUST00000126908.8	protein_coding	chr19:5422827-5424787
chr19	5424730	5424809	+	GC_rich	Low_complexity	Low_complexity	chr19	5424778	5424780	-	ENSMUST00000134697.1,ENSMUSG00000024914.16	Drap1	ENSMUSG00000024914.16	ENSMUST00000134697.1	protein_coding	chr19:5423607-5424779
chr19	5435750	5435922	+	B3A	SINE	B2	chr19	5435899	5435901	+	ENSMUST00000158284.1,ENSMUSG00000088909.1	Gm25432	ENSMUSG00000088909.1	ENSMUST00000158284.1	snoRNA	chr19:5435900-5435965
chr19	5474642	5474695	+	GC_rich	Low_complexity	Low_complexity	chr19	5474687	5474689	+	ENSMUST00000165485.7,ENSMUSG00000024909.14	Efemp2	ENSMUSG00000024909.14	ENSMUST00000165485.7	protein_coding	chr19:5474688-5481853
chr19	5474727	5474752	+	(TCCG)n	Simple_repeat	Simple_repeat	chr19	5474739	5474741	+	ENSMUST00000166253.7,ENSMUSG00000024909.14	Efemp2	ENSMUSG00000024909.14	ENSMUST00000166253.7	protein_coding	chr19:5474740-5480741
chr19	5474727	5474752	+	(TCCG)n	Simple_repeat	Simple_repeat	chr19	5474739	5474741	+	ENSMUST00000167371.7,ENSMUSG00000024909.14	Efemp2	ENSMUSG00000024909.14	ENSMUST00000167371.7	protein_coding	chr19:5474740-5481853
chr19	5474727	5474752	+	(TCCG)n	Simple_repeat	Simple_repeat	chr19	5474746	5474748	+	ENSMUST00000167855.7,ENSMUSG00000024909.14	Efemp2	ENSMUSG00000024909.14	ENSMUST00000167855.7	protein_coding	chr19:5474747-5478256
chr19	5474727	5474752	+	(TCCG)n	Simple_repeat	Simple_repeat	chr19	5474749	5474751	+	ENSMUST00000070118.13,ENSMUSG00000024909.14	Efemp2	ENSMUSG00000024909.14	ENSMUST00000070118.13	protein_coding	chr19:5474750-5481853
chr19	5673928	5674079	+	ID_B1	SINE	B4	chr19	5673946	5673948	-	ENSMUST00000146638.1,ENSMUSG00000054874.12	Pcnx3	ENSMUSG00000054874.12	ENSMUST00000146638.1	protein_coding	chr19:5664638-5673947
chr19	5771382	5771487	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr19	5771400	5771402	-	ENSMUST00000025890.8,ENSMUSG00000024941.8	Scyl1	ENSMUSG00000024941.8	ENSMUST00000025890.8	protein_coding	chr19:5758427-5771401
chr19	6015196	6015306	+	C-rich	Low_complexity	Low_complexity	chr19	6015246	6015248	-	ENSMUST00000025891.8,ENSMUSG00000024942.16	Capn1	ENSMUSG00000024942.16	ENSMUST00000025891.8	protein_coding	chr19:5988546-6015247
chr19	6085510	6086036	+	RLTR12E	LTR	ERVK	chr19	6085750	6085752	+	ENSMUST00000156961.7,ENSMUSG00000024791.10	Cdca5	ENSMUSG00000024791.10	ENSMUST00000156961.7	protein_coding	chr19:6085751-6091777
chr19	6085510	6086036	+	RLTR12E	LTR	ERVK	chr19	6085826	6085828	+	ENSMUST00000152528.1,ENSMUSG00000024791.10	Cdca5	ENSMUSG00000024791.10	ENSMUST00000152528.1	protein_coding	chr19:6085827-6091777
chr19	6121567	6121698	-	MIRc	SINE	MIR	chr19	6121641	6121643	-	ENSMUST00000124171.7,ENSMUSG00000024787.13	Snx15	ENSMUSG00000024787.13	ENSMUST00000124171.7	protein_coding	chr19:6120632-6121642
chr19	6122277	6122423	-	B1_Mus2	SINE	Alu	chr19	6122286	6122288	-	ENSMUST00000150718.1,ENSMUSG00000024787.13	Snx15	ENSMUSG00000024787.13	ENSMUST00000150718.1	protein_coding	chr19:6121492-6122287
chr19	6138147	6138329	+	B2_Mm2	SINE	B2	chr19	6138159	6138161	-	ENSMUST00000123193.1,ENSMUSG00000024944.5	Arl2	ENSMUSG00000024944.5	ENSMUST00000123193.1	protein_coding	chr19:6137470-6138160
chr19	6140952	6141002	+	GC_rich	Low_complexity	Low_complexity	chr19	6140982	6140984	+	ENSMUST00000134150.7,ENSMUSG00000039699.13	Batf2	ENSMUSG00000039699.13	ENSMUST00000134150.7	protein_coding	chr19:6140983-6172473
chr19	6144728	6144820	+	5S	rRNA	rRNA	chr19	6144731	6144733	+	ENSMUST00000122793.1,ENSMUSG00000084742.1	n-R5s19	ENSMUSG00000084742.1	ENSMUST00000122793.1	rRNA	chr19:6144732-6144851
chr19	6276857	6276967	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr19	6276924	6276926	+	ENSMUST00000165797.1,ENSMUSG00000024772.9	Ehd1	ENSMUSG00000024772.9	ENSMUST00000165797.1	protein_coding	chr19:6276925-6281392
chr19	6341171	6341208	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr19	6341190	6341192	+	ENSMUST00000149624.7,ENSMUSG00000024948.14	Map4k2	ENSMUSG00000024948.14	ENSMUST00000149624.7	protein_coding	chr19:6341191-6341996
chr19	6341171	6341208	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr19	6341207	6341209	+	ENSMUST00000124556.7,ENSMUSG00000024948.14	Map4k2	ENSMUSG00000024948.14	ENSMUST00000124556.7	protein_coding	chr19:6341208-6355301
chr19	6341220	6341249	+	GC_rich	Low_complexity	Low_complexity	chr19	6341223	6341225	+	ENSMUST00000130382.7,ENSMUSG00000024948.14	Map4k2	ENSMUSG00000024948.14	ENSMUST00000130382.7	protein_coding	chr19:6341224-6345742
chr19	6350698	6350926	+	B3	SINE	B2	chr19	6350908	6350910	+	ENSMUST00000140098.1,ENSMUSG00000024948.14	Map4k2	ENSMUSG00000024948.14	ENSMUST00000140098.1	protein_coding	chr19:6350909-6351580
chr19	6399768	6399909	+	G-rich	Low_complexity	Low_complexity	chr19	6399863	6399865	+	ENSMUST00000146601.7,ENSMUSG00000032946.16	Rasgrp2	ENSMUSG00000032946.16	ENSMUST00000146601.7	protein_coding	chr19:6399864-6402574
chr19	6399768	6399909	+	G-rich	Low_complexity	Low_complexity	chr19	6399867	6399869	+	ENSMUST00000150713.7,ENSMUSG00000032946.16	Rasgrp2	ENSMUSG00000032946.16	ENSMUST00000150713.7	protein_coding	chr19:6399868-6403478
chr19	6399768	6399909	+	G-rich	Low_complexity	Low_complexity	chr19	6399873	6399875	+	ENSMUST00000139522.7,ENSMUSG00000032946.16	Rasgrp2	ENSMUSG00000032946.16	ENSMUST00000139522.7	protein_coding	chr19:6399874-6404337
chr19	6517159	6517205	+	(CCA)n	Simple_repeat	Simple_repeat	chr19	6517204	6517206	+	ENSMUST00000154580.1,ENSMUSG00000033768.16	Nrxn2	ENSMUSG00000033768.16	ENSMUST00000154580.1	protein_coding	chr19:6517205-6532296
chr19	6541458	6541600	-	B1_Mur4	SINE	Alu	chr19	6541548	6541550	-	ENSMUST00000129698.1,ENSMUSG00000061742.11	Slc22a12	ENSMUSG00000061742.11	ENSMUST00000129698.1	protein_coding	chr19:6536065-6541549
chr19	6544521	6545077	-	RMER19C	LTR	ERVK	chr19	6544898	6544900	-	ENSMUST00000153483.1,ENSMUSG00000085694.1	Gm14967	ENSMUSG00000085694.1	ENSMUST00000153483.1	antisense	chr19:6543771-6544899
chr19	6563757	6563908	-	B1_Mus1	SINE	Alu	chr19	6563779	6563781	+	ENSMUST00000175061.1,ENSMUSG00000092802.1	Gm26460	ENSMUSG00000092802.1	ENSMUST00000175061.1	miRNA	chr19:6563780-6563905
chr19	6674530	6674644	+	B3A	SINE	B2	chr19	6674547	6674549	-	ENSMUST00000137405.1,ENSMUSG00000084825.1	2410152P15Rik	ENSMUSG00000084825.1	ENSMUST00000137405.1	processed_transcript	chr19:6617671-6674548
chr19	7246708	7246810	+	U6	snRNA	snRNA	chr19	7246708	7246710	+	ENSMUST00000158343.2,ENSMUSG00000096774.1	Gm22113	ENSMUSG00000096774.1	ENSMUST00000158343.2	snRNA	chr19:7246709-7246812
chr19	7268287	7268377	+	(CGAG)n	Simple_repeat	Simple_repeat	chr19	7268300	7268302	+	ENSMUST00000066646.10,ENSMUSG00000024968.13	Rcor2	ENSMUSG00000024968.13	ENSMUST00000066646.10	protein_coding	chr19:7268301-7275225
chr19	7420952	7421100	+	ID_B1	SINE	B4	chr19	7421027	7421029	+	ENSMUST00000160561.2,ENSMUSG00000053080.10	2700081O15Rik	ENSMUSG00000053080.10	ENSMUST00000160561.2	protein_coding	chr19:7421028-7425540
chr19	8479033	8479056	+	(A)n	Simple_repeat	Simple_repeat	chr19	8479055	8479057	-	ENSMUST00000209457.1,ENSMUSG00000110298.1	Gm8189	ENSMUSG00000110298.1	ENSMUST00000209457.1	transcribed_unprocessed_pseudogene	chr19:8474727-8479056
chr19	8663775	8663814	+	(TGGG)n	Simple_repeat	Simple_repeat	chr19	8663788	8663790	+	ENSMUST00000177197.7,ENSMUSG00000032773.9	Chrm1	ENSMUSG00000032773.9	ENSMUST00000177197.7	protein_coding	chr19:8663789-8678154
chr19	8663972	8664017	+	(TG)n	Simple_repeat	Simple_repeat	chr19	8664004	8664006	+	ENSMUST00000035444.9,ENSMUSG00000032773.9	Chrm1	ENSMUSG00000032773.9	ENSMUST00000035444.9	protein_coding	chr19:8664005-8681567
chr19	8663972	8664017	+	(TG)n	Simple_repeat	Simple_repeat	chr19	8664004	8664006	+	ENSMUST00000163785.1,ENSMUSG00000032773.9	Chrm1	ENSMUSG00000032773.9	ENSMUST00000163785.1	protein_coding	chr19:8664005-8683587
chr19	8749284	8749407	-	ID_B1	SINE	B4	chr19	8749398	8749400	+	ENSMUST00000176570.1,ENSMUSG00000010110.17	Stx5a	ENSMUSG00000010110.17	ENSMUST00000176570.1	protein_coding	chr19:8749399-8750094
chr19	8776898	8777034	+	B1_Mm	SINE	Alu	chr19	8776961	8776963	-	ENSMUST00000176080.1,ENSMUSG00000003680.15	Taf6l	ENSMUSG00000003680.15	ENSMUST00000176080.1	protein_coding	chr19:8774487-8776962
chr19	8776962	8777064	-	B1_Mus2	SINE	Alu	chr19	8776961	8776963	-	ENSMUST00000176080.1,ENSMUSG00000003680.15	Taf6l	ENSMUSG00000003680.15	ENSMUST00000176080.1	protein_coding	chr19:8774487-8776962
chr19	8779032	8779172	+	B1_Mus2	SINE	Alu	chr19	8779049	8779051	-	ENSMUST00000176747.1,ENSMUSG00000003680.15	Taf6l	ENSMUSG00000003680.15	ENSMUST00000176747.1	protein_coding	chr19:8775437-8779050
chr19	9234658	9235158	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr19	9234977	9234979	-	ENSMUST00000103867.1,ENSMUSG00000077055.1	Gm24543	ENSMUSG00000077055.1	ENSMUST00000103867.1	miRNA	chr19:9234897-9234978
chr19	9907957	9908391	+	MT2_Mm	LTR	ERVL	chr19	9908157	9908159	+	ENSMUST00000117009.1,ENSMUSG00000080659.1	Gm24484	ENSMUSG00000080659.1	ENSMUST00000117009.1	miRNA	chr19:9908158-9908278
chr19	10198327	10198698	+	MT2B1	LTR	ERVL	chr19	10198367	10198369	+	ENSMUST00000150038.1,ENSMUSG00000064032.2	Gm10143	ENSMUSG00000064032.2	ENSMUST00000150038.1	processed_transcript	chr19:10198368-10202384
chr19	10839709	10839777	-	PB1D11	SINE	Alu	chr19	10839726	10839728	+	ENSMUST00000138380.1,ENSMUSG00000024737.2	Slc15a3	ENSMUSG00000024737.2	ENSMUST00000138380.1	protein_coding	chr19:10839727-10843347
chr19	10874736	10874768	+	(TTTG)n	Simple_repeat	Simple_repeat	chr19	10874736	10874738	-	ENSMUST00000138897.1,ENSMUSG00000034659.14	Tmem109	ENSMUSG00000034659.14	ENSMUST00000138897.1	protein_coding	chr19:10872134-10874737
chr19	11036340	11038629	+	L1_Mus3	LINE	L1	chr19	11037634	11037636	-	ENSMUST00000185380.1,ENSMUSG00000101264.1	Gm28347	ENSMUSG00000101264.1	ENSMUST00000185380.1	lincRNA	chr19:11035417-11037635
chr19	11111635	11111901	-	LTR87	LTR	ERVL?	chr19	11111875	11111877	-	ENSMUST00000188756.1,ENSMUSG00000024729.7	1700017D01Rik	ENSMUSG00000024729.7	ENSMUST00000188756.1	protein_coding	chr19:11109354-11111876
chr19	11485770	11486354	+	RMER19B2	LTR	ERVK	chr19	11485937	11485939	+	ENSMUST00000189635.6,ENSMUSG00000058470.10	Gm8369	ENSMUSG00000058470.10	ENSMUST00000189635.6	protein_coding	chr19:11485938-11506260
chr19	11485770	11486354	+	RMER19B2	LTR	ERVK	chr19	11486039	11486041	+	ENSMUST00000190498.1,ENSMUSG00000058470.10	Gm8369	ENSMUSG00000058470.10	ENSMUST00000190498.1	protein_coding	chr19:11486040-11487176
chr19	11485770	11486354	+	RMER19B2	LTR	ERVK	chr19	11486108	11486110	+	ENSMUST00000185867.1,ENSMUSG00000058470.10	Gm8369	ENSMUSG00000058470.10	ENSMUST00000185867.1	protein_coding	chr19:11486109-11487065
chr19	11516351	11516593	-	Lx4A	LINE	L1	chr19	11516511	11516513	+	ENSMUST00000163078.7,ENSMUSG00000024677.13	Ms4a6b	ENSMUSG00000024677.13	ENSMUST00000163078.7	protein_coding	chr19:11516512-11531256
chr19	11516762	11517463	+	MLTR18C_MM	LTR	ERVK	chr19	11516952	11516954	-	ENSMUST00000189628.1,ENSMUSG00000100529.1	Gm19261	ENSMUSG00000100529.1	ENSMUST00000189628.1	antisense	chr19:11516211-11516953
chr19	11536694	11537073	+	RMER13B	LTR	ERVK	chr19	11536800	11536802	+	ENSMUST00000025581.6,ENSMUSG00000024678.6	Ms4a4d	ENSMUSG00000024678.6	ENSMUST00000025581.6	protein_coding	chr19:11536801-11558467
chr19	11584019	11584894	-	L1_Mus4	LINE	L1	chr19	11584356	11584358	-	ENSMUST00000193293.1,ENSMUSG00000104088.1	Gm38275	ENSMUSG00000104088.1	ENSMUST00000193293.1	TEC	chr19:11582826-11584357
chr19	11593041	11598840	+	L1Md_A	LINE	L1	chr19	11593372	11593374	-	ENSMUST00000155669.7,ENSMUSG00000024679.10	Ms4a6d	ENSMUSG00000024679.10	ENSMUST00000155669.7	protein_coding	chr19:11586980-11593373
chr19	11593041	11598840	+	L1Md_A	LINE	L1	chr19	11593154	11593156	-	ENSMUST00000125291.2,ENSMUSG00000024679.10	Ms4a6d	ENSMUSG00000024679.10	ENSMUST00000125291.2	protein_coding	chr19:11586987-11593155
chr19	11818883	11818922	+	GC_rich	Low_complexity	Low_complexity	chr19	11818892	11818894	-	ENSMUST00000211641.1,ENSMUSG00000041488.16	Stx3	ENSMUSG00000041488.16	ENSMUST00000211641.1	protein_coding	chr19:11776558-11818893
chr19	11829489	11829782	+	Lx8	LINE	L1	chr19	11829641	11829643	-	ENSMUST00000213141.1,ENSMUSG00000048292.3	Olfr1417	ENSMUSG00000048292.3	ENSMUST00000213141.1	protein_coding	chr19:11826803-11829642
chr19	11912371	11912408	+	GC_rich	Low_complexity	Low_complexity	chr19	11912398	11912400	+	ENSMUST00000061618.7,ENSMUSG00000046139.7	Patl1	ENSMUSG00000046139.7	ENSMUST00000061618.7	protein_coding	chr19:11912399-11945096
chr19	11923624	11923737	+	B1F	SINE	Alu	chr19	11923727	11923729	+	ENSMUST00000198985.1,ENSMUSG00000104979.1	Mir6994	ENSMUSG00000104979.1	ENSMUST00000198985.1	miRNA	chr19:11923728-11923800
chr19	11965808	11965852	+	GC_rich	Low_complexity	Low_complexity	chr19	11965843	11965845	+	ENSMUST00000025590.9,ENSMUSG00000024687.10	Osbp	ENSMUSG00000024687.10	ENSMUST00000025590.9	protein_coding	chr19:11965844-11994105
chr19	12020021	12020195	-	B3A	SINE	B2	chr19	12020174	12020176	+	ENSMUST00000208900.1,ENSMUSG00000109030.1	Olfr1421-ps1	ENSMUSG00000109030.1	ENSMUST00000208900.1	unprocessed_pseudogene	chr19:12020175-12020382
chr19	12037727	12037903	-	L1M5	LINE	L1	chr19	12037730	12037732	+	ENSMUST00000207831.1,ENSMUSG00000109417.1	Gm44859	ENSMUSG00000109417.1	ENSMUST00000207831.1	unprocessed_pseudogene	chr19:12037731-12037824
chr19	12090043	12090615	+	L1_Mus1	LINE	L1	chr19	12090441	12090443	-	ENSMUST00000219996.1,ENSMUSG00000044994.10	Olfr1426	ENSMUSG00000044994.10	ENSMUST00000219996.1	protein_coding	chr19:12086746-12090442
chr19	12246942	12247846	+	Lx3C	LINE	L1	chr19	12247645	12247647	-	ENSMUST00000181346.1,ENSMUSG00000097646.1	Gm26864	ENSMUSG00000097646.1	ENSMUST00000181346.1	processed_pseudogene	chr19:12247491-12247646
chr19	12290082	12292320	-	L1_Mus2	LINE	L1	chr19	12290305	12290307	-	ENSMUST00000207773.1,ENSMUSG00000109433.1	Olfr1435-ps1	ENSMUSG00000109433.1	ENSMUST00000207773.1	unprocessed_pseudogene	chr19:12290058-12290306
chr19	12501947	12501996	+	(TC)n	Simple_repeat	Simple_repeat	chr19	12501995	12501997	-	ENSMUST00000045521.7,ENSMUSG00000039982.7	Dtx4	ENSMUSG00000039982.7	ENSMUST00000045521.7	protein_coding	chr19:12466341-12501996
chr19	12545325	12547565	+	MuRRS4-int	LTR	ERV1	chr19	12545739	12545741	+	ENSMUST00000139270.7,ENSMUSG00000024691.13	Fam111a	ENSMUSG00000024691.13	ENSMUST00000139270.7	protein_coding	chr19:12545740-12583963
chr19	12665254	12665361	+	U6	snRNA	snRNA	chr19	12665254	12665256	+	ENSMUST00000083958.1,ENSMUSG00000065892.1	Gm24521	ENSMUSG00000065892.1	ENSMUST00000083958.1	snRNA	chr19:12665255-12665361
chr19	12720907	12721729	-	Lx3_Mus	LINE	L1	chr19	12721202	12721204	-	ENSMUST00000125496.7,ENSMUSG00000084981.7	Gm15962	ENSMUSG00000084981.7	ENSMUST00000125496.7	antisense	chr19:12706055-12721203
chr19	12720907	12721729	-	Lx3_Mus	LINE	L1	chr19	12721246	12721248	-	ENSMUST00000124184.1,ENSMUSG00000084981.7	Gm15962	ENSMUSG00000084981.7	ENSMUST00000124184.1	antisense	chr19:12715790-12721247
chr19	13146719	13146882	+	B3	SINE	B2	chr19	13146742	13146744	-	ENSMUST00000078299.4,ENSMUSG00000057503.6	Olfr1459	ENSMUSG00000057503.6	ENSMUST00000078299.4	protein_coding	chr19:13145642-13146743
chr19	13301000	13301107	-	U6	snRNA	snRNA	chr19	13301106	13301108	-	ENSMUST00000082890.1,ENSMUSG00000064824.1	Gm22443	ENSMUSG00000064824.1	ENSMUST00000082890.1	snRNA	chr19:13301001-13301107
chr19	13599454	13599972	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr19	13599767	13599769	-	ENSMUST00000103832.2,ENSMUSG00000094077.1	Gm22323	ENSMUSG00000094077.1	ENSMUST00000103832.2	miRNA	chr19:13599660-13599768
chr19	13604793	13605311	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr19	13605106	13605108	-	ENSMUST00000103842.2,ENSMUSG00000096298.1	Gm23931	ENSMUSG00000096298.1	ENSMUST00000103842.2	miRNA	chr19:13604999-13605107
chr19	14718480	14718637	+	L1MC3	LINE	L1	chr19	14718479	14718481	-	ENSMUST00000122726.1,ENSMUSG00000084675.1	Gm26026	ENSMUSG00000084675.1	ENSMUST00000122726.1	snRNA	chr19:14718358-14718480
chr19	15680003	15680110	+	U6	snRNA	snRNA	chr19	15680003	15680005	+	ENSMUST00000083389.1,ENSMUSG00000094850.1	Gm24319	ENSMUSG00000094850.1	ENSMUST00000083389.1	snRNA	chr19:15680004-15680110
chr19	15909691	15909848	+	URR1B	DNA	hAT-Charlie	chr19	15909711	15909713	-	ENSMUST00000161707.1,ENSMUSG00000024640.9	Psat1	ENSMUSG00000024640.9	ENSMUST00000161707.1	protein_coding	chr19:15905130-15909712
chr19	15946725	15947446	-	RMER1B	Other	Other	chr19	15947336	15947338	-	ENSMUST00000162416.1,ENSMUSG00000024640.9	Psat1	ENSMUSG00000024640.9	ENSMUST00000162416.1	protein_coding	chr19:15915009-15947337
chr19	17214213	17214349	-	B1_Mur1	SINE	Alu	chr19	17214313	17214315	+	ENSMUST00000224117.1,ENSMUSG00000039126.10	Prune2	ENSMUSG00000039126.10	ENSMUST00000224117.1	protein_coding	chr19:17214314-17218761
chr19	17865332	17865419	-	U6	snRNA	snRNA	chr19	17865418	17865420	-	ENSMUST00000157745.1,ENSMUSG00000088370.1	Gm22880	ENSMUSG00000088370.1	ENSMUST00000157745.1	snRNA	chr19:17865317-17865419
chr19	18732740	18732904	+	U1	snRNA	snRNA	chr19	18732740	18732742	+	ENSMUST00000083007.1,ENSMUSG00000064941.1	Gm23238	ENSMUSG00000064941.1	ENSMUST00000083007.1	snRNA	chr19:18732741-18732904
chr19	18776807	18777015	-	7SK	RNA	RNA	chr19	18776960	18776962	-	ENSMUST00000157976.1,ENSMUSG00000088601.1	Gm24190	ENSMUSG00000088601.1	ENSMUST00000157976.1	misc_RNA	chr19:18776746-18776961
chr19	19111159	19111208	+	GA-rich	Low_complexity	Low_complexity	chr19	19111195	19111197	-	ENSMUST00000112832.7,ENSMUSG00000036192.15	Rorb	ENSMUSG00000036192.15	ENSMUST00000112832.7	protein_coding	chr19:18930605-19111196
chr19	21275874	21276015	+	B1_Mus1	SINE	Alu	chr19	21275979	21275981	+	ENSMUST00000141568.1,ENSMUSG00000024750.10	Zfand5	ENSMUSG00000024750.10	ENSMUST00000141568.1	protein_coding	chr19:21275980-21280664
chr19	23075533	23076218	-	MTEb-int	LTR	ERVL-MaLR	chr19	23075852	23075854	-	ENSMUST00000181623.1,ENSMUSG00000097930.1	C330002G04Rik	ENSMUSG00000097930.1	ENSMUST00000181623.1	lincRNA	chr19:23037390-23075853
chr19	23215626	23215815	+	L2	LINE	L2	chr19	23215801	23215803	-	ENSMUST00000224441.1,ENSMUSG00000024943.9	Smc5	ENSMUSG00000024943.9	ENSMUST00000224441.1	protein_coding	chr19:23214735-23215802
chr19	23296328	23296435	+	U6	snRNA	snRNA	chr19	23296328	23296330	+	ENSMUST00000104059.1,ENSMUSG00000096249.1	Gm24263	ENSMUSG00000096249.1	ENSMUST00000104059.1	snRNA	chr19:23296329-23296435
chr19	23687379	23687401	+	GC_rich	Low_complexity	Low_complexity	chr19	23687399	23687401	+	ENSMUST00000099560.3,ENSMUSG00000074925.3	Ptar1	ENSMUSG00000074925.3	ENSMUST00000099560.3	protein_coding	chr19:23687400-23721129
chr19	23758831	23758977	+	G-rich	Low_complexity	Low_complexity	chr19	23758875	23758877	+	ENSMUST00000025830.7,ENSMUSG00000024897.8	Apba1	ENSMUSG00000024897.8	ENSMUST00000025830.7	protein_coding	chr19:23758876-23949597
chr19	24555861	24555935	+	G-rich	Low_complexity	Low_complexity	chr19	24555871	24555873	-	ENSMUST00000025800.14,ENSMUSG00000024867.14	Pip5k1b	ENSMUSG00000024867.14	ENSMUST00000025800.14	protein_coding	chr19:24294794-24555872
chr19	25453959	25454063	-	U6	snRNA	snRNA	chr19	25454062	25454064	-	ENSMUST00000082909.1,ENSMUSG00000064843.1	Gm26207	ENSMUSG00000064843.1	ENSMUST00000082909.1	snRNA	chr19:25453960-25454063
chr19	25454063	25454216	-	B2_Mm2	SINE	B2	chr19	25454062	25454064	-	ENSMUST00000082909.1,ENSMUSG00000064843.1	Gm26207	ENSMUSG00000064843.1	ENSMUST00000082909.1	snRNA	chr19:25453960-25454063
chr19	26260425	26260493	-	U4	snRNA	snRNA	chr19	26260492	26260494	-	ENSMUST00000122640.1,ENSMUSG00000084589.1	Gm25176	ENSMUSG00000084589.1	ENSMUST00000122640.1	snRNA	chr19:26260369-26260493
chr19	26715781	26715893	-	MIRb	SINE	MIR	chr19	26715883	26715885	+	ENSMUST00000207226.1,ENSMUSG00000024921.17	Smarca2	ENSMUSG00000024921.17	ENSMUST00000207226.1	protein_coding	chr19:26715884-26774220
chr19	26744990	26745390	+	MTB	LTR	ERVL-MaLR	chr19	26745208	26745210	+	ENSMUST00000207418.1,ENSMUSG00000024921.17	Smarca2	ENSMUSG00000024921.17	ENSMUST00000207418.1	protein_coding	chr19:26745209-26774221
chr19	26748157	26748189	+	(CA)n	Simple_repeat	Simple_repeat	chr19	26748188	26748190	+	ENSMUST00000207812.1,ENSMUSG00000024921.17	Smarca2	ENSMUSG00000024921.17	ENSMUST00000207812.1	protein_coding	chr19:26748189-26774254
chr19	26750252	26750297	+	CT-rich	Low_complexity	Low_complexity	chr19	26750288	26750290	+	ENSMUST00000207380.1,ENSMUSG00000024921.17	Smarca2	ENSMUSG00000024921.17	ENSMUST00000207380.1	protein_coding	chr19:26750289-26751981
chr19	26750916	26750962	+	(T)n	Simple_repeat	Simple_repeat	chr19	26750938	26750940	+	ENSMUST00000175953.2,ENSMUSG00000024921.17	Smarca2	ENSMUSG00000024921.17	ENSMUST00000175953.2	protein_coding	chr19:26750939-26774220
chr19	28010691	28010904	-	L1M4b	LINE	L1	chr19	28010789	28010791	-	ENSMUST00000174420.1,ENSMUSG00000040929.16	Rfx3	ENSMUSG00000040929.16	ENSMUST00000174420.1	protein_coding	chr19:27867515-28010790
chr19	28011026	28011068	+	(GGA)n	Simple_repeat	Simple_repeat	chr19	28011047	28011049	-	ENSMUST00000046898.15,ENSMUSG00000040929.16	Rfx3	ENSMUSG00000040929.16	ENSMUST00000046898.15	protein_coding	chr19:27766441-28011048
chr19	28011026	28011068	+	(GGA)n	Simple_repeat	Simple_repeat	chr19	28011044	28011046	-	ENSMUST00000172907.7,ENSMUSG00000040929.16	Rfx3	ENSMUSG00000040929.16	ENSMUST00000172907.7	protein_coding	chr19:27768318-28011045
chr19	28011154	28011197	+	(GA)n	Simple_repeat	Simple_repeat	chr19	28011165	28011167	-	ENSMUST00000173161.1,ENSMUSG00000040929.16	Rfx3	ENSMUSG00000040929.16	ENSMUST00000173161.1	protein_coding	chr19:27805143-28011166
chr19	28325814	28326209	-	MTA_Mm	LTR	ERVL-MaLR	chr19	28326005	28326007	-	ENSMUST00000159520.7,ENSMUSG00000052942.13	Glis3	ENSMUSG00000052942.13	ENSMUST00000159520.7	protein_coding	chr19:28262347-28326006
chr19	28893012	28893041	+	(T)n	Simple_repeat	Simple_repeat	chr19	28893012	28893014	+	ENSMUST00000160702.7,ENSMUSG00000024935.10	Slc1a1	ENSMUSG00000024935.10	ENSMUST00000160702.7	protein_coding	chr19:28893013-28911877
chr19	29639357	29639740	-	MTA_Mm	LTR	ERVL-MaLR	chr19	29639562	29639564	-	ENSMUST00000161124.7,ENSMUSG00000046324.12	Ermp1	ENSMUSG00000046324.12	ENSMUST00000161124.7	protein_coding	chr19:29627048-29639563
chr19	29951536	29951833	+	MTEa	LTR	ERVL-MaLR	chr19	29951815	29951817	+	ENSMUST00000136850.1,ENSMUSG00000024810.16	Il33	ENSMUSG00000024810.16	ENSMUST00000136850.1	protein_coding	chr19:29951816-29952813
chr19	30088738	30089067	-	ORR1A2	LTR	ERVL-MaLR	chr19	30089055	30089057	+	ENSMUST00000123773.1,ENSMUSG00000024817.13	Uhrf2	ENSMUSG00000024817.13	ENSMUST00000123773.1	protein_coding	chr19:30089056-30093722
chr19	30261414	30261556	+	B1_Mur3	SINE	Alu	chr19	30261516	30261518	-	ENSMUST00000175495.1,ENSMUSG00000093236.1	Gm24108	ENSMUSG00000093236.1	ENSMUST00000175495.1	miRNA	chr19:30261441-30261517
chr19	30264736	30264972	+	Lx7	LINE	L1	chr19	30264879	30264881	+	ENSMUST00000158391.1,ENSMUSG00000089016.1	Gm24883	ENSMUSG00000089016.1	ENSMUST00000158391.1	misc_RNA	chr19:30264880-30265160
chr19	30781415	30781603	+	URR1A	DNA	hAT-Charlie	chr19	30781451	30781453	-	ENSMUST00000182401.1,ENSMUSG00000052920.14	Prkg1	ENSMUSG00000052920.14	ENSMUST00000182401.1	protein_coding	chr19:30708885-30781452
chr19	32322932	32323281	-	MER99	DNA	hAT?	chr19	32323228	32323230	-	ENSMUST00000141655.7,ENSMUSG00000040451.17	Sgms1	ENSMUSG00000040451.17	ENSMUST00000141655.7	protein_coding	chr19:32160170-32323229
chr19	32970060	32970308	-	7SK	RNA	RNA	chr19	32970307	32970309	-	ENSMUST00000122563.1,ENSMUSG00000084512.1	Gm22482	ENSMUSG00000084512.1	ENSMUST00000122563.1	misc_RNA	chr19:32969950-32970308
chr19	33157047	33157460	-	L1MB8	LINE	L1	chr19	33157111	33157113	+	ENSMUST00000199287.1,ENSMUSG00000106278.1	Mir3970	ENSMUSG00000106278.1	ENSMUST00000199287.1	miRNA	chr19:33157112-33157201
chr19	33592424	33594853	+	L1Md_T	LINE	L1	chr19	33592712	33592714	-	ENSMUST00000184785.1,ENSMUSG00000098770.1	Gm27440	ENSMUSG00000098770.1	ENSMUST00000184785.1	miRNA	chr19:33592607-33592713
chr19	33954235	33954341	+	U6	snRNA	snRNA	chr19	33954234	33954236	+	ENSMUST00000083446.1,ENSMUSG00000065380.1	Gm23095	ENSMUSG00000065380.1	ENSMUST00000083446.1	snRNA	chr19:33954235-33954341
chr19	34067500	34067639	+	MIRc	SINE	MIR	chr19	34067528	34067530	+	ENSMUST00000148821.1,ENSMUSG00000024770.14	Lipn	ENSMUSG00000024770.14	ENSMUST00000148821.1	protein_coding	chr19:34067529-34081158
chr19	34154736	34155228	-	MT2_Mm	LTR	ERVL	chr19	34154916	34154918	-	ENSMUST00000160474.7,ENSMUSG00000024774.15	Ankrd22	ENSMUSG00000024774.15	ENSMUST00000160474.7	protein_coding	chr19:34122925-34154917
chr19	34160679	34161171	-	MT2_Mm	LTR	ERVL	chr19	34160859	34160861	-	ENSMUST00000159887.1,ENSMUSG00000024774.15	Ankrd22	ENSMUSG00000024774.15	ENSMUST00000159887.1	protein_coding	chr19:34122925-34160860
chr19	34192178	34192236	+	G-rich	Low_complexity	Low_complexity	chr19	34192228	34192230	+	ENSMUST00000054956.14,ENSMUSG00000024776.17	Stambpl1	ENSMUSG00000024776.17	ENSMUST00000054956.14	protein_coding	chr19:34192229-34240333
chr19	34395747	34395777	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr19	34395754	34395756	-	ENSMUST00000102345.1,ENSMUSG00000076300.1	Gm23060	ENSMUSG00000076300.1	ENSMUST00000102345.1	miRNA	chr19:34395647-34395755
chr19	34796178	34796342	+	U1	snRNA	snRNA	chr19	34796177	34796179	+	ENSMUST00000157587.1,ENSMUSG00000088212.1	Gm22082	ENSMUSG00000088212.1	ENSMUST00000157587.1	snRNA	chr19:34796178-34796338
chr19	34965390	34965438	-	L1_Mur1	LINE	L1	chr19	34965395	34965397	+	ENSMUST00000158526.1,ENSMUSG00000089151.1	Mir1950	ENSMUSG00000089151.1	ENSMUST00000158526.1	miRNA	chr19:34965396-34965469
chr19	35276510	35276590	+	(CAGTT)n	Simple_repeat	Simple_repeat	chr19	35276521	35276523	-	ENSMUST00000175632.1,ENSMUSG00000093373.1	Gm23075	ENSMUSG00000093373.1	ENSMUST00000175632.1	miRNA	chr19:35276453-35276522
chr19	35605800	35605929	+	Lx3A	LINE	L1	chr19	35605803	35605805	-	ENSMUST00000174974.1,ENSMUSG00000092715.1	Gm22853	ENSMUSG00000092715.1	ENSMUST00000174974.1	rRNA	chr19:35605674-35605804
chr19	35760062	35760203	+	Lx7	LINE	L1	chr19	35760064	35760066	-	ENSMUST00000104017.1,ENSMUSG00000077205.1	Gm25611	ENSMUSG00000077205.1	ENSMUST00000104017.1	snoRNA	chr19:35759933-35760065
chr19	35924515	35924840	-	MLT1G	LTR	ERVL-MaLR	chr19	35924577	35924579	-	ENSMUST00000178904.1,ENSMUSG00000094707.1	A830019P07Rik	ENSMUSG00000094707.1	ENSMUST00000178904.1	lincRNA	chr19:35835221-35924578
chr19	36391981	36392377	+	MT2C_Mm	LTR	ERVL	chr19	36392243	36392245	+	ENSMUST00000224971.1,ENSMUSG00000024805.16	Pcgf5	ENSMUSG00000024805.16	ENSMUST00000224971.1	protein_coding	chr19:36392244-36440048
chr19	36554519	36554670	+	G-rich	Low_complexity	Low_complexity	chr19	36554638	36554640	+	ENSMUST00000139215.7,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000139215.7	protein_coding	chr19:36554639-36621132
chr19	36554519	36554670	+	G-rich	Low_complexity	Low_complexity	chr19	36554667	36554669	+	ENSMUST00000169036.8,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000169036.8	protein_coding	chr19:36554668-36620242
chr19	36554519	36554670	+	G-rich	Low_complexity	Low_complexity	chr19	36554668	36554670	+	ENSMUST00000149629.8,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000149629.8	protein_coding	chr19:36554669-36591147
chr19	36554519	36554670	+	G-rich	Low_complexity	Low_complexity	chr19	36554668	36554670	+	ENSMUST00000047247.11,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000047247.11	protein_coding	chr19:36554669-36621135
chr19	36554626	36554727	+	(CGG)n	Simple_repeat	Simple_repeat	chr19	36554638	36554640	+	ENSMUST00000139215.7,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000139215.7	protein_coding	chr19:36554639-36621132
chr19	36554626	36554727	+	(CGG)n	Simple_repeat	Simple_repeat	chr19	36554667	36554669	+	ENSMUST00000169036.8,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000169036.8	protein_coding	chr19:36554668-36620242
chr19	36554626	36554727	+	(CGG)n	Simple_repeat	Simple_repeat	chr19	36554668	36554670	+	ENSMUST00000149629.8,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000149629.8	protein_coding	chr19:36554669-36591147
chr19	36554626	36554727	+	(CGG)n	Simple_repeat	Simple_repeat	chr19	36554668	36554670	+	ENSMUST00000047247.11,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000047247.11	protein_coding	chr19:36554669-36621135
chr19	36554626	36554727	+	(CGG)n	Simple_repeat	Simple_repeat	chr19	36554677	36554679	+	ENSMUST00000141503.1,ENSMUSG00000041180.13	Hectd2	ENSMUSG00000041180.13	ENSMUST00000141503.1	protein_coding	chr19:36554678-36597381
chr19	36625500	36626202	-	RMER1B	Other	Other	chr19	36626023	36626025	-	ENSMUST00000147754.7,ENSMUSG00000087579.7	Hectd2os	ENSMUSG00000087579.7	ENSMUST00000147754.7	processed_transcript	chr19:36619430-36626024
chr19	36625500	36626202	-	RMER1B	Other	Other	chr19	36626003	36626005	-	ENSMUST00000129953.1,ENSMUSG00000087579.7	Hectd2os	ENSMUSG00000087579.7	ENSMUST00000129953.1	processed_transcript	chr19:36619435-36626004
chr19	37179185	37179293	+	5S	rRNA	rRNA	chr19	37179185	37179187	+	ENSMUST00000175253.1,ENSMUSG00000092994.1	Gm23918	ENSMUSG00000092994.1	ENSMUST00000175253.1	rRNA	chr19:37179186-37179291
chr19	37197966	37198251	-	ORR1A4	LTR	ERVL-MaLR	chr19	37198108	37198110	-	ENSMUST00000123727.7,ENSMUSG00000039652.16	Cpeb3	ENSMUSG00000039652.16	ENSMUST00000123727.7	protein_coding	chr19:37024639-37198109
chr19	37233482	37233572	+	AT_rich	Low_complexity	Low_complexity	chr19	37233483	37233485	-	ENSMUST00000158518.2,ENSMUSG00000089143.2	Gm25268	ENSMUSG00000089143.2	ENSMUST00000158518.2	snRNA	chr19:37233382-37233484
chr19	37463745	37463842	+	U6	snRNA	snRNA	chr19	37463745	37463747	+	ENSMUST00000158772.1,ENSMUSG00000089397.1	Gm23026	ENSMUSG00000089397.1	ENSMUST00000158772.1	snRNA	chr19:37463746-37463851
chr19	37916862	37917021	+	B2_Mm2	SINE	B2	chr19	37916904	37916906	-	ENSMUST00000224580.1,ENSMUSG00000048612.16	Myof	ENSMUSG00000048612.16	ENSMUST00000224580.1	protein_coding	chr19:37915606-37916905
chr19	38264744	38264768	+	(A)n	Simple_repeat	Simple_repeat	chr19	38264761	38264763	+	ENSMUST00000199665.1,ENSMUSG00000067242.11	Lgi1	ENSMUSG00000067242.11	ENSMUST00000199665.1	protein_coding	chr19:38264762-38265914
chr19	38265348	38265423	+	(TC)n	Simple_repeat	Simple_repeat	chr19	38265409	38265411	+	ENSMUST00000130039.2,ENSMUSG00000067242.11	Lgi1	ENSMUSG00000067242.11	ENSMUST00000130039.2	protein_coding	chr19:38265410-38301269
chr19	38472980	38473210	-	7SK	RNA	RNA	chr19	38473201	38473203	-	ENSMUST00000158315.1,ENSMUSG00000088940.1	Gm24930	ENSMUSG00000088940.1	ENSMUST00000158315.1	misc_RNA	chr19:38473120-38473202
chr19	38481098	38481178	+	G-rich	Low_complexity	Low_complexity	chr19	38481108	38481110	+	ENSMUST00000181994.1,ENSMUSG00000024998.17	Plce1	ENSMUSG00000024998.17	ENSMUST00000181994.1	protein_coding	chr19:38481109-38524066
chr19	38481098	38481178	+	G-rich	Low_complexity	Low_complexity	chr19	38481120	38481122	+	ENSMUST00000182481.7,ENSMUSG00000024998.17	Plce1	ENSMUSG00000024998.17	ENSMUST00000182481.7	protein_coding	chr19:38481121-38783430
chr19	38722224	38722407	-	MER3	DNA	hAT-Charlie	chr19	38722369	38722371	+	ENSMUST00000182589.7,ENSMUSG00000024998.17	Plce1	ENSMUSG00000024998.17	ENSMUST00000182589.7	protein_coding	chr19:38722370-38783588
chr19	38734147	38735911	-	L1_Mur3	LINE	L1	chr19	38734913	38734915	+	ENSMUST00000183131.1,ENSMUSG00000024998.17	Plce1	ENSMUSG00000024998.17	ENSMUST00000183131.1	protein_coding	chr19:38734914-38751123
chr19	39255919	39256300	+	MTA_Mm	LTR	ERVL-MaLR	chr19	39256126	39256128	+	ENSMUST00000175649.1,ENSMUSG00000093610.7	Cyp2c53-ps	ENSMUSG00000093610.7	ENSMUST00000175649.1	transcribed_unprocessed_pseudogene	chr19:39256127-39274985
chr19	39269200	39269581	+	MTA_Mm	LTR	ERVL-MaLR	chr19	39269404	39269406	+	ENSMUST00000176624.7,ENSMUSG00000003053.17	Cyp2c29	ENSMUSG00000003053.17	ENSMUST00000176624.7	protein_coding	chr19:39269405-39330648
chr19	40210543	40215290	+	L1_Mus3	LINE	L1	chr19	40212381	40212383	+	ENSMUST00000182456.1,ENSMUSG00000098091.1	Gm16470	ENSMUSG00000098091.1	ENSMUST00000182456.1	processed_pseudogene	chr19:40212382-40213379
chr19	40223345	40223489	-	B1_Mus1	SINE	Alu	chr19	40223355	40223357	-	ENSMUST00000182540.1,ENSMUSG00000055044.12	Pdlim1	ENSMUSG00000055044.12	ENSMUST00000182540.1	protein_coding	chr19:40222363-40223356
chr19	40681404	40681674	+	ORR1F	LTR	ERVL-MaLR	chr19	40681666	40681668	+	ENSMUST00000137508.1,ENSMUSG00000048120.16	Entpd1	ENSMUSG00000048120.16	ENSMUST00000137508.1	protein_coding	chr19:40681667-40723193
chr19	41263877	41264009	+	(CCG)n	Simple_repeat	Simple_repeat	chr19	41264003	41264005	-	ENSMUST00000025989.8,ENSMUSG00000025016.10	Tm9sf3	ENSMUSG00000025016.10	ENSMUST00000025989.8	protein_coding	chr19:41210842-41264004
chr19	41482563	41482681	+	GC_rich	Low_complexity	Low_complexity	chr19	41482644	41482646	+	ENSMUST00000067795.11,ENSMUSG00000025019.15	Lcor	ENSMUSG00000025019.15	ENSMUST00000067795.11	protein_coding	chr19:41482645-41562246
chr19	41549626	41549658	+	(GA)n	Simple_repeat	Simple_repeat	chr19	41549638	41549640	+	ENSMUST00000163929.1,ENSMUSG00000025019.15	Lcor	ENSMUSG00000025019.15	ENSMUST00000163929.1	protein_coding	chr19:41549639-41559781
chr19	41744803	41744951	+	7SK	RNA	RNA	chr19	41744803	41744805	+	ENSMUST00000157595.1,ENSMUSG00000088220.1	Gm22601	ENSMUSG00000088220.1	ENSMUST00000157595.1	misc_RNA	chr19:41744804-41745053
chr19	41951286	41951448	-	B3A	SINE	B2	chr19	41951343	41951345	-	ENSMUST00000166517.1,ENSMUSG00000025159.8	Mms19	ENSMUSG00000025159.8	ENSMUST00000166517.1	protein_coding	chr19:41949727-41951344
chr19	41964603	41964638	+	(A)n	Simple_repeat	Simple_repeat	chr19	41964626	41964628	-	ENSMUST00000170209.7,ENSMUSG00000025159.8	Mms19	ENSMUSG00000025159.8	ENSMUST00000170209.7	protein_coding	chr19:41944205-41964627
chr19	42147272	42147427	+	G-rich	Low_complexity	Low_complexity	chr19	42147399	42147401	+	ENSMUST00000061111.9,ENSMUSG00000044345.9	Marveld1	ENSMUSG00000044345.9	ENSMUST00000061111.9	protein_coding	chr19:42147400-42151703
chr19	42178798	42179001	-	B3	SINE	B2	chr19	42178822	42178824	+	ENSMUST00000168130.1,ENSMUSG00000018820.13	Zfyve27	ENSMUSG00000018820.13	ENSMUST00000168130.1	protein_coding	chr19:42178823-42184159
chr19	42274913	42275001	+	Charlie24	DNA	hAT-Charlie	chr19	42274963	42274965	+	ENSMUST00000102368.1,ENSMUSG00000076323.1	Gm26339	ENSMUSG00000076323.1	ENSMUST00000102368.1	miRNA	chr19:42274964-42275062
chr19	42581160	42581200	+	(TG)n	Simple_repeat	Simple_repeat	chr19	42581160	42581162	+	ENSMUST00000162238.1,ENSMUSG00000025184.10	R3hcc1l	ENSMUSG00000025184.10	ENSMUST00000162238.1	protein_coding	chr19:42581161-42584771
chr19	43160792	43160902	-	5S	rRNA	rRNA	chr19	43160901	43160903	-	ENSMUST00000158752.1,ENSMUSG00000089377.1	Gm22135	ENSMUSG00000089377.1	ENSMUST00000158752.1	rRNA	chr19:43160795-43160902
chr19	43440446	43440467	+	GC_rich	Low_complexity	Low_complexity	chr19	43440459	43440461	-	ENSMUST00000225283.1,ENSMUSG00000114742.1	Gm47936	ENSMUSG00000114742.1	ENSMUST00000225283.1	antisense	chr19:43434610-43440460
chr19	43726359	43726495	-	B1F2	SINE	Alu	chr19	43726366	43726368	+	ENSMUST00000131293.1,ENSMUSG00000025192.13	Entpd7	ENSMUSG00000025192.13	ENSMUST00000131293.1	protein_coding	chr19:43726367-43728136
chr19	43838627	43838859	-	L1M4	LINE	L1	chr19	43838802	43838804	+	ENSMUST00000099413.2,ENSMUSG00000025194.5	Abcc2	ENSMUSG00000025194.5	ENSMUST00000099413.2	protein_coding	chr19:43838803-43840728
chr19	43857247	43857351	-	U6	snRNA	snRNA	chr19	43857350	43857352	-	ENSMUST00000157865.1,ENSMUSG00000088490.1	Gm24400	ENSMUSG00000088490.1	ENSMUST00000157865.1	snRNA	chr19:43857245-43857351
chr19	43932316	43932427	+	5S	rRNA	rRNA	chr19	43932315	43932317	+	ENSMUST00000122692.1,ENSMUSG00000084641.1	n-R5s21	ENSMUSG00000084641.1	ENSMUST00000122692.1	rRNA	chr19:43932316-43932432
chr19	43940191	43940213	+	GC_rich	Low_complexity	Low_complexity	chr19	43940190	43940192	-	ENSMUST00000212396.1,ENSMUSG00000025195.9	Dnmbp	ENSMUSG00000025195.9	ENSMUST00000212396.1	protein_coding	chr19:43846821-43940191
chr19	44203271	44203298	+	(CA)n	Simple_repeat	Simple_repeat	chr19	44203287	44203289	+	ENSMUST00000026220.5,ENSMUSG00000025202.7	Scd3	ENSMUSG00000025202.7	ENSMUST00000026220.5	protein_coding	chr19:44203288-44244016
chr19	44407702	44407778	+	(GGGA)n	Simple_repeat	Simple_repeat	chr19	44407708	44407710	-	ENSMUST00000041331.2,ENSMUSG00000037071.2	Scd1	ENSMUSG00000037071.2	ENSMUST00000041331.2	protein_coding	chr19:44394451-44407709
chr19	44808269	44808420	-	B1_Mur2	SINE	Alu	chr19	44808405	44808407	+	ENSMUST00000184584.1,ENSMUSG00000098952.1	Mir6405	ENSMUSG00000098952.1	ENSMUST00000184584.1	miRNA	chr19:44808406-44808529
chr19	44945022	44945127	+	U6	snRNA	snRNA	chr19	44945021	44945023	+	ENSMUST00000083225.1,ENSMUSG00000065159.1	Gm25482	ENSMUSG00000065159.1	ENSMUST00000083225.1	snRNA	chr19:44945022-44945128
chr19	45018073	45018230	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr19	45018134	45018136	+	ENSMUST00000178087.1,ENSMUSG00000035342.13	Lzts2	ENSMUSG00000035342.13	ENSMUST00000178087.1	protein_coding	chr19:45018135-45027104
chr19	45235730	45235901	+	CT-rich	Low_complexity	Low_complexity	chr19	45235811	45235813	-	ENSMUST00000099401.5,ENSMUSG00000025216.9	Lbx1	ENSMUSG00000025216.9	ENSMUST00000099401.5	protein_coding	chr19:45232684-45235812
chr19	45317822	45317925	+	C-rich	Low_complexity	Low_complexity	chr19	45317892	45317894	+	ENSMUST00000191181.1,ENSMUSG00000102057.1	Gm29594	ENSMUSG00000102057.1	ENSMUST00000191181.1	lincRNA	chr19:45317893-45318429
chr19	45578262	45578289	+	AT_rich	Low_complexity	Low_complexity	chr19	45578276	45578278	+	ENSMUST00000161373.1,ENSMUSG00000041035.8	Gm17018	ENSMUSG00000041035.8	ENSMUST00000161373.1	protein_coding	chr19:45578277-45579763
chr19	45797025	45797058	+	(CACG)n	Simple_repeat	Simple_repeat	chr19	45797043	45797045	-	ENSMUST00000159446.1,ENSMUSG00000025221.15	Kcnip2	ENSMUSG00000025221.15	ENSMUST00000159446.1	protein_coding	chr19:45794982-45797044
chr19	46039577	46039652	+	C-rich	Low_complexity	Low_complexity	chr19	46039620	46039622	-	ENSMUST00000056931.13,ENSMUSG00000025223.14	Ldb1	ENSMUSG00000025223.14	ENSMUST00000056931.13	protein_coding	chr19:46032594-46039621
chr19	46284499	46284621	+	B1F	SINE	Alu	chr19	46284562	46284564	+	ENSMUST00000176046.1,ENSMUSG00000025224.15	Gbf1	ENSMUSG00000025224.15	ENSMUST00000176046.1	protein_coding	chr19:46284563-46285980
chr19	46335272	46335407	-	B1_Mus1	SINE	Alu	chr19	46335286	46335288	+	ENSMUST00000180538.1,ENSMUSG00000096996.1	Gm26792	ENSMUSG00000096996.1	ENSMUST00000180538.1	lincRNA	chr19:46335287-46338538
chr19	46501647	46501668	+	(T)n	Simple_repeat	Simple_repeat	chr19	46501647	46501649	+	ENSMUST00000026008.7,ENSMUSG00000025034.8	Trim8	ENSMUSG00000025034.8	ENSMUST00000026008.7	protein_coding	chr19:46501648-46516444
chr19	46573056	46573095	+	(TCC)n	Simple_repeat	Simple_repeat	chr19	46573084	46573086	-	ENSMUST00000026009.8,ENSMUSG00000025035.8	Arl3	ENSMUSG00000025035.8	ENSMUST00000026009.8	protein_coding	chr19:46531109-46573085
chr19	46599067	46599218	+	GA-rich	Low_complexity	Low_complexity	chr19	46599083	46599085	+	ENSMUST00000138302.8,ENSMUSG00000047731.17	Wbp1l	ENSMUSG00000047731.17	ENSMUST00000138302.8	protein_coding	chr19:46599084-46657389
chr19	46599067	46599218	+	GA-rich	Low_complexity	Low_complexity	chr19	46599112	46599114	+	ENSMUST00000132202.2,ENSMUSG00000047731.17	Wbp1l	ENSMUSG00000047731.17	ENSMUST00000132202.2	protein_coding	chr19:46599113-46657385
chr19	46599067	46599218	+	GA-rich	Low_complexity	Low_complexity	chr19	46599113	46599115	+	ENSMUST00000099376.10,ENSMUSG00000047731.17	Wbp1l	ENSMUSG00000047731.17	ENSMUST00000099376.10	protein_coding	chr19:46599114-46657382
chr19	46599067	46599218	+	GA-rich	Low_complexity	Low_complexity	chr19	46599123	46599125	+	ENSMUST00000175937.1,ENSMUSG00000047731.17	Wbp1l	ENSMUSG00000047731.17	ENSMUST00000175937.1	protein_coding	chr19:46599124-46644555
chr19	46962321	46962379	+	GC_rich	Low_complexity	Low_complexity	chr19	46962350	46962352	-	ENSMUST00000168536.7,ENSMUSG00000025041.16	Nt5c2	ENSMUSG00000025041.16	ENSMUST00000168536.7	protein_coding	chr19:46886831-46962351
chr19	46969415	46969589	-	B3	SINE	B2	chr19	46969473	46969475	-	ENSMUST00000086961.13,ENSMUSG00000025041.16	Nt5c2	ENSMUSG00000025041.16	ENSMUST00000086961.13	protein_coding	chr19:46886831-46969474
chr19	47058161	47058268	+	U6	snRNA	snRNA	chr19	47058161	47058163	+	ENSMUST00000082487.1,ENSMUSG00000094400.1	Gm23140	ENSMUSG00000094400.1	ENSMUST00000082487.1	snRNA	chr19:47058162-47058268
chr19	47579878	47580117	+	GC_rich	Low_complexity	Low_complexity	chr19	47580018	47580020	+	ENSMUST00000051691.7,ENSMUSG00000025060.14	Slk	ENSMUSG00000025060.14	ENSMUST00000051691.7	protein_coding	chr19:47580019-47642455
chr19	47616961	47617183	+	B4	SINE	B4	chr19	47617105	47617107	-	ENSMUST00000136557.1,ENSMUSG00000086121.1	Gm16068	ENSMUSG00000086121.1	ENSMUST00000136557.1	antisense	chr19:47606144-47617106
chr19	47649593	47649616	+	(TG)n	Simple_repeat	Simple_repeat	chr19	47649594	47649596	-	ENSMUST00000151102.1,ENSMUSG00000025064.14	Col17a1	ENSMUSG00000025064.14	ENSMUST00000151102.1	protein_coding	chr19:47648100-47649595
chr19	47714784	47714887	-	U6	snRNA	snRNA	chr19	47714886	47714888	-	ENSMUST00000082931.2,ENSMUSG00000096704.1	Gm24805	ENSMUSG00000096704.1	ENSMUST00000082931.2	snRNA	chr19:47714784-47714887
chr19	47754927	47755230	+	MTE2a	LTR	ERVL-MaLR	chr19	47755156	47755158	-	ENSMUST00000185078.1,ENSMUSG00000099069.1	Mir8090	ENSMUSG00000099069.1	ENSMUST00000185078.1	miRNA	chr19:47755022-47755157
chr19	48240555	48240645	-	5S	rRNA	rRNA	chr19	48240644	48240646	-	ENSMUST00000158379.1,ENSMUSG00000089004.1	Gm23857	ENSMUSG00000089004.1	ENSMUST00000158379.1	rRNA	chr19:48240535-48240645
chr19	50812323	50812386	+	5S	rRNA	rRNA	chr19	50812323	50812325	+	ENSMUST00000158469.1,ENSMUSG00000089094.1	Gm25659	ENSMUSG00000089094.1	ENSMUST00000158469.1	rRNA	chr19:50812324-50812360
chr19	51239689	51239796	-	U6	snRNA	snRNA	chr19	51239795	51239797	-	ENSMUST00000083209.1,ENSMUSG00000065143.1	Gm25644	ENSMUSG00000065143.1	ENSMUST00000083209.1	snRNA	chr19:51239690-51239796
chr19	53040198	53040288	+	L2b	LINE	L2	chr19	53040213	53040215	-	ENSMUST00000183108.7,ENSMUSG00000025027.17	Xpnpep1	ENSMUSG00000025027.17	ENSMUST00000183108.7	protein_coding	chr19:52991183-53040214
chr19	53330428	53330469	+	G-rich	Low_complexity	Low_complexity	chr19	53330445	53330447	+	ENSMUST00000111737.1,ENSMUSG00000025025.13	Mxi1	ENSMUSG00000025025.13	ENSMUST00000111737.1	protein_coding	chr19:53330446-53375810
chr19	53589062	53593193	-	Lx	LINE	L1	chr19	53589066	53589068	-	ENSMUST00000095978.3,ENSMUSG00000071497.3	Nutf2-ps1	ENSMUSG00000071497.3	ENSMUST00000095978.3	protein_coding	chr19:53588204-53589067
chr19	53600360	53600398	+	GC_rich	Low_complexity	Low_complexity	chr19	53600397	53600399	+	ENSMUST00000025930.9,ENSMUSG00000024974.10	Smc3	ENSMUSG00000024974.10	ENSMUST00000025930.9	protein_coding	chr19:53600398-53645833
chr19	53944773	53944914	+	G-rich	Low_complexity	Low_complexity	chr19	53944875	53944877	+	ENSMUST00000025932.7,ENSMUSG00000024976.13	Shoc2	ENSMUSG00000024976.13	ENSMUST00000025932.7	protein_coding	chr19:53944876-54033268
chr19	55303038	55303189	+	MER3	DNA	hAT-Charlie	chr19	55303088	55303090	-	ENSMUST00000225032.1,ENSMUSG00000024982.10	Zdhhc6	ENSMUSG00000024982.10	ENSMUST00000225032.1	protein_coding	chr19:55298788-55303089
chr19	55741998	55742062	+	T-rich	Low_complexity	Low_complexity	chr19	55742057	55742059	+	ENSMUST00000111659.8,ENSMUSG00000024985.18	Tcf7l2	ENSMUSG00000024985.18	ENSMUST00000111659.8	protein_coding	chr19:55742058-55932209
chr19	55742259	55742295	+	(T)n	Simple_repeat	Simple_repeat	chr19	55742268	55742270	+	ENSMUST00000126434.7,ENSMUSG00000024985.18	Tcf7l2	ENSMUSG00000024985.18	ENSMUST00000126434.7	protein_coding	chr19:55742269-55910549
chr19	55742259	55742295	+	(T)n	Simple_repeat	Simple_repeat	chr19	55742268	55742270	+	ENSMUST00000111653.7,ENSMUSG00000024985.18	Tcf7l2	ENSMUSG00000024985.18	ENSMUST00000111653.7	protein_coding	chr19:55742269-55925236
chr19	56478780	56479041	-	B4	SINE	B4	chr19	56478900	56478902	+	ENSMUST00000225391.1,ENSMUSG00000035818.14	Plekhs1	ENSMUSG00000035818.14	ENSMUST00000225391.1	protein_coding	chr19:56478901-56479864
chr19	56548126	56548161	+	(A)n	Simple_repeat	Simple_repeat	chr19	56548146	56548148	-	ENSMUST00000183143.7,ENSMUSG00000025077.13	Dclre1a	ENSMUSG00000025077.13	ENSMUST00000183143.7	protein_coding	chr19:56529167-56548147
chr19	57000964	57001072	-	MER81	DNA	hAT-Blackjack	chr19	57001045	57001047	-	ENSMUST00000126964.7,ENSMUSG00000025083.18	Afap1l2	ENSMUSG00000025083.18	ENSMUST00000126964.7	protein_coding	chr19:56930098-57001046
chr19	57135321	57135811	-	RLTR10	LTR	ERVK	chr19	57135724	57135726	-	ENSMUST00000128212.1,ENSMUSG00000025085.16	Ablim1	ENSMUSG00000025085.16	ENSMUST00000128212.1	protein_coding	chr19:57130264-57135725
chr19	57197453	57197501	+	GC_rich	Low_complexity	Low_complexity	chr19	57197455	57197457	-	ENSMUST00000111550.7,ENSMUSG00000025085.16	Ablim1	ENSMUSG00000025085.16	ENSMUST00000111550.7	protein_coding	chr19:57036684-57197456
chr19	57197453	57197501	+	GC_rich	Low_complexity	Low_complexity	chr19	57197495	57197497	-	ENSMUST00000111544.7,ENSMUSG00000025085.16	Ablim1	ENSMUSG00000025085.16	ENSMUST00000111544.7	protein_coding	chr19:57037182-57197496
chr19	58606045	58606392	+	RLTR9A	LTR	ERVK	chr19	58606328	58606330	+	ENSMUST00000187629.1,ENSMUSG00000100001.1	1810007D17Rik	ENSMUSG00000100001.1	ENSMUST00000187629.1	lincRNA	chr19:58606329-58629753
chr19	58786514	58786694	-	7SK	RNA	RNA	chr19	58786690	58786692	-	ENSMUST00000157331.1,ENSMUSG00000087956.1	Gm22561	ENSMUSG00000087956.1	ENSMUST00000157331.1	misc_RNA	chr19:58786608-58786691
chr19	59170033	59170112	+	A-rich	Low_complexity	Low_complexity	chr19	59170055	59170057	-	ENSMUST00000172821.3,ENSMUSG00000006270.7	Vax1	ENSMUSG00000006270.7	ENSMUST00000172821.3	protein_coding	chr19:59166187-59170056
chr19	59458337	59458440	+	GA-rich	Low_complexity	Low_complexity	chr19	59458371	59458373	+	ENSMUST00000062216.3,ENSMUSG00000043969.4	Emx2	ENSMUSG00000043969.4	ENSMUST00000062216.3	protein_coding	chr19:59458372-59465357
chr19	59901035	59901430	-	L1Md_F2	LINE	L1	chr19	59901061	59901063	-	ENSMUST00000164379.1,ENSMUSG00000090965.1	Gm17203	ENSMUSG00000090965.1	ENSMUST00000164379.1	lincRNA	chr19:59896241-59901062
chr19	59943342	59943372	+	GC_rich	Low_complexity	Low_complexity	chr19	59943363	59943365	-	ENSMUST00000051996.12,ENSMUSG00000040022.14	Rab11fip2	ENSMUSG00000040022.14	ENSMUST00000051996.12	protein_coding	chr19:59903696-59943364
chr19	60151195	60151312	+	PB1D10	SINE	Alu	chr19	60151293	60151295	+	ENSMUST00000190698.1,ENSMUSG00000053117.10	E330013P04Rik	ENSMUSG00000053117.10	ENSMUST00000190698.1	lincRNA	chr19:60151294-60157305
chr19	60830064	60830713	-	ORR1A1-int	LTR	ERVL-MaLR	chr19	60830551	60830553	+	ENSMUST00000142375.1,ENSMUSG00000024993.15	Fam45a	ENSMUSG00000024993.15	ENSMUST00000142375.1	protein_coding	chr19:60830552-60835113
chr19	61117127	61117448	-	RLTR25B	LTR	ERVK	chr19	61117372	61117374	-	ENSMUST00000181469.1,ENSMUSG00000074733.14	Zfp950	ENSMUSG00000074733.14	ENSMUST00000181469.1	protein_coding	chr19:61116533-61117373
chr19	61119468	61119840	-	MurSatRep1	Unknown	Unknown	chr19	61119589	61119591	-	ENSMUST00000178819.1,ENSMUSG00000074733.14	Zfp950	ENSMUSG00000074733.14	ENSMUST00000178819.1	protein_coding	chr19:61119420-61119590
chr19	61127341	61127763	-	MurSatRep1	Unknown	Unknown	chr19	61127563	61127565	-	ENSMUST00000148569.3,ENSMUSG00000074733.14	Zfp950	ENSMUSG00000074733.14	ENSMUST00000148569.3	protein_coding	chr19:61127003-61127564
chr19	61176200	61176580	-	MT2C_Mm	LTR	ERVL	chr19	61176308	61176310	-	ENSMUST00000180168.1,ENSMUSG00000094649.1	Gm7102	ENSMUSG00000094649.1	ENSMUST00000180168.1	protein_coding	chr19:61174686-61176309
chr19	61183784	61184258	+	MMSAT4	Satellite	Satellite	chr19	61183889	61183891	+	ENSMUST00000092094.1,ENSMUSG00000069475.1	Gm6020	ENSMUSG00000069475.1	ENSMUST00000092094.1	protein_coding	chr19:61183890-61183955
chr19	61296955	61297429	-	MMSAT4	Satellite	Satellite	chr19	61297068	61297070	-	ENSMUST00000179346.1,ENSMUSG00000095993.1	Gm21060	ENSMUSG00000095993.1	ENSMUST00000179346.1	protein_coding	chr19:61296902-61297069
chr2	3066074	3066171	-	Lx5c	LINE	L1	chr2	3066087	3066089	-	ENSMUST00000192098.1,ENSMUSG00000103120.1	Gm37392	ENSMUSG00000103120.1	ENSMUST00000192098.1	processed_pseudogene	chr2:3065573-3066088
chr2	3070850	3075416	-	L1Md_T	LINE	L1	chr2	3075106	3075108	+	ENSMUST00000183970.1,ENSMUSG00000099154.1	Gm27306	ENSMUSG00000099154.1	ENSMUST00000183970.1	miRNA	chr2:3075107-3075213
chr2	3291374	3291518	-	U4	snRNA	snRNA	chr2	3291517	3291519	-	ENSMUST00000082795.1,ENSMUSG00000075837.1	Gm22005	ENSMUSG00000075837.1	ENSMUST00000082795.1	snRNA	chr2:3291378-3291518
chr2	3353976	3354005	+	AT_rich	Low_complexity	Low_complexity	chr2	3354003	3354005	-	ENSMUST00000193499.1,ENSMUSG00000103786.1	Gm37525	ENSMUSG00000103786.1	ENSMUST00000193499.1	sense_intronic	chr2:3351134-3354004
chr2	3397188	3397589	+	RLTR10	LTR	ERVK	chr2	3397209	3397211	-	ENSMUST00000194918.5,ENSMUSG00000026645.11	Olah	ENSMUSG00000026645.11	ENSMUST00000194918.5	protein_coding	chr2:3341987-3397210
chr2	3613700	3613954	-	RMER19B	LTR	ERVK	chr2	3613757	3613759	+	ENSMUST00000115052.8,ENSMUSG00000026655.15	Fam107b	ENSMUSG00000026655.15	ENSMUST00000115052.8	protein_coding	chr2:3613758-3779787
chr2	3713428	3713460	+	GC_rich	Low_complexity	Low_complexity	chr2	3713457	3713459	+	ENSMUST00000027965.10,ENSMUSG00000026655.15	Fam107b	ENSMUSG00000026655.15	ENSMUST00000027965.10	protein_coding	chr2:3713458-3782142
chr2	3773734	3774015	-	B4A	SINE	B4	chr2	3773945	3773947	+	ENSMUST00000176254.1,ENSMUSG00000026655.15	Fam107b	ENSMUSG00000026655.15	ENSMUST00000176254.1	protein_coding	chr2:3773946-3779625
chr2	3854827	3855222	+	MTA_Mm	LTR	ERVL-MaLR	chr2	3855029	3855031	+	ENSMUST00000141222.1,ENSMUSG00000085656.1	Gm13180	ENSMUSG00000085656.1	ENSMUST00000141222.1	lincRNA	chr2:3855030-3877575
chr2	4091099	4091158	+	(CA)n	Simple_repeat	Simple_repeat	chr2	4091139	4091141	+	ENSMUST00000193956.1,ENSMUSG00000104284.1	Gm10862	ENSMUSG00000104284.1	ENSMUST00000193956.1	sense_intronic	chr2:4091140-4094489
chr2	4103512	4103986	-	MT2C_Mm	LTR	ERVL	chr2	4103876	4103878	+	ENSMUST00000195785.1,ENSMUSG00000102517.1	Gm38085	ENSMUSG00000102517.1	ENSMUST00000195785.1	sense_intronic	chr2:4103877-4106938
chr2	4152795	4152866	+	G-rich	Low_complexity	Low_complexity	chr2	4152862	4152864	+	ENSMUST00000132710.2,ENSMUSG00000026657.16	Frmd4a	ENSMUSG00000026657.16	ENSMUST00000132710.2	protein_coding	chr2:4152863-4171425
chr2	4300838	4300894	+	(CA)n	Simple_repeat	Simple_repeat	chr2	4300884	4300886	+	ENSMUST00000147156.8,ENSMUSG00000026657.16	Frmd4a	ENSMUSG00000026657.16	ENSMUST00000147156.8	protein_coding	chr2:4300885-4538897
chr2	4380961	4381067	-	U6	snRNA	snRNA	chr2	4381066	4381068	-	ENSMUST00000101878.1,ENSMUSG00000075826.1	Gm23691	ENSMUSG00000075826.1	ENSMUST00000101878.1	snRNA	chr2:4380961-4381067
chr2	4587243	4587478	+	B4	SINE	B4	chr2	4587286	4587288	-	ENSMUST00000151994.7,ENSMUSG00000086018.7	Gm13179	ENSMUSG00000086018.7	ENSMUST00000151994.7	antisense	chr2:4586024-4587287
chr2	4587243	4587478	+	B4	SINE	B4	chr2	4587286	4587288	-	ENSMUST00000137801.1,ENSMUSG00000086018.7	Gm13179	ENSMUSG00000086018.7	ENSMUST00000137801.1	antisense	chr2:4586328-4587287
chr2	4717755	4717846	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	4717830	4717832	+	ENSMUST00000184139.7,ENSMUSG00000048186.14	Bend7	ENSMUSG00000048186.14	ENSMUST00000184139.7	protein_coding	chr2:4717831-4800563
chr2	4717755	4717846	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	4717833	4717835	+	ENSMUST00000115022.7,ENSMUSG00000048186.14	Bend7	ENSMUSG00000048186.14	ENSMUST00000115022.7	protein_coding	chr2:4717834-4788933
chr2	4881518	4881592	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	4881563	4881565	+	ENSMUST00000027973.13,ENSMUSG00000026662.13	Sephs1	ENSMUSG00000026662.13	ENSMUST00000027973.13	protein_coding	chr2:4881564-4910557
chr2	4937481	4937505	+	AT_rich	Low_complexity	Low_complexity	chr2	4937482	4937484	+	ENSMUST00000128738.1,ENSMUSG00000026664.7	Phyh	ENSMUSG00000026664.7	ENSMUST00000128738.1	protein_coding	chr2:4937483-4938343
chr2	4993149	4993270	-	PB1D10	SINE	Alu	chr2	4993256	4993258	-	ENSMUST00000139882.7,ENSMUSG00000026669.14	Mcm10	ENSMUSG00000026669.14	ENSMUST00000139882.7	protein_coding	chr2:4991031-4993257
chr2	4994828	4994927	+	PB1D7	SINE	Alu	chr2	4994837	4994839	-	ENSMUST00000151533.1,ENSMUSG00000026669.14	Mcm10	ENSMUSG00000026669.14	ENSMUST00000151533.1	protein_coding	chr2:4991260-4994838
chr2	5001538	5001753	+	MLT1J	LTR	ERVL-MaLR	chr2	5001557	5001559	-	ENSMUST00000150091.7,ENSMUSG00000026669.14	Mcm10	ENSMUSG00000026669.14	ENSMUST00000150091.7	protein_coding	chr2:4990724-5001558
chr2	5005253	5005325	-	PB1D10	SINE	Alu	chr2	5005318	5005320	-	ENSMUST00000146257.1,ENSMUSG00000026669.14	Mcm10	ENSMUSG00000026669.14	ENSMUST00000146257.1	protein_coding	chr2:5004042-5005319
chr2	5012232	5012409	+	B2_Mm1t	SINE	B2	chr2	5012343	5012345	-	ENSMUST00000102985.7,ENSMUSG00000026669.14	Mcm10	ENSMUSG00000026669.14	ENSMUST00000102985.7	protein_coding	chr2:4989714-5012344
chr2	5035802	5035920	+	ID_B1	SINE	B4	chr2	5035902	5035904	-	ENSMUST00000125203.7,ENSMUSG00000026672.11	Optn	ENSMUSG00000026672.11	ENSMUST00000125203.7	protein_coding	chr2:5020642-5035903
chr2	5037056	5037206	+	HAL1	LINE	L1	chr2	5037196	5037198	-	ENSMUST00000145501.1,ENSMUSG00000026672.11	Optn	ENSMUSG00000026672.11	ENSMUST00000145501.1	protein_coding	chr2:5021301-5037197
chr2	5798595	5798707	+	B1_Mur4	SINE	Alu	chr2	5798597	5798599	-	ENSMUST00000130142.1,ENSMUSG00000039128.13	Cdc123	ENSMUSG00000039128.13	ENSMUST00000130142.1	protein_coding	chr2:5794665-5798598
chr2	5874747	5874915	-	RSINE1	SINE	B4	chr2	5874795	5874797	-	ENSMUST00000124859.1,ENSMUSG00000025816.15	Sec61a2	ENSMUSG00000025816.15	ENSMUST00000124859.1	protein_coding	chr2:5871993-5874796
chr2	5924599	5925150	-	MT2_Mm	LTR	ERVL	chr2	5924775	5924777	-	ENSMUST00000127609.1,ENSMUSG00000025815.13	Dhtkd1	ENSMUSG00000025815.13	ENSMUST00000127609.1	protein_coding	chr2:5923875-5924776
chr2	6322655	6322727	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	6322666	6322668	+	ENSMUST00000114937.7,ENSMUSG00000039046.15	Usp6nl	ENSMUSG00000039046.15	ENSMUST00000114937.7	protein_coding	chr2:6322667-6446390
chr2	6471989	6472009	+	(CA)n	Simple_repeat	Simple_repeat	chr2	6471999	6472001	+	ENSMUST00000147685.1,ENSMUSG00000086109.2	Gm13391	ENSMUSG00000086109.2	ENSMUST00000147685.1	lincRNA	chr2:6472000-6478619
chr2	6884991	6885070	+	(TC)n	Simple_repeat	Simple_repeat	chr2	6884995	6884997	-	ENSMUST00000170438.7,ENSMUSG00000002107.18	Celf2	ENSMUSG00000002107.18	ENSMUST00000170438.7	protein_coding	chr2:6539705-6884996
chr2	6884991	6885070	+	(TC)n	Simple_repeat	Simple_repeat	chr2	6884995	6884997	-	ENSMUST00000114924.9,ENSMUSG00000002107.18	Celf2	ENSMUSG00000002107.18	ENSMUST00000114924.9	protein_coding	chr2:6539705-6884996
chr2	6884991	6885070	+	(TC)n	Simple_repeat	Simple_repeat	chr2	6884995	6884997	-	ENSMUST00000114934.10,ENSMUSG00000002107.18	Celf2	ENSMUSG00000002107.18	ENSMUST00000114934.10	protein_coding	chr2:6541869-6884996
chr2	7076408	7076535	+	L1Md_T	LINE	L1	chr2	7076413	7076415	-	ENSMUST00000083890.1,ENSMUSG00000065824.1	Gm26315	ENSMUSG00000065824.1	ENSMUST00000083890.1	misc_RNA	chr2:7076094-7076414
chr2	7509386	7509587	-	RLTR27	LTR	ERVK	chr2	7509562	7509564	-	ENSMUST00000182037.1,ENSMUSG00000002107.18	Celf2	ENSMUSG00000002107.18	ENSMUST00000182037.1	protein_coding	chr2:7394076-7509563
chr2	7509557	7509836	-	RLTR10A	LTR	ERVK	chr2	7509562	7509564	-	ENSMUST00000182037.1,ENSMUSG00000002107.18	Celf2	ENSMUSG00000002107.18	ENSMUST00000182037.1	protein_coding	chr2:7394076-7509563
chr2	7781221	7781609	-	MTA_Mm	LTR	ERVL-MaLR	chr2	7781407	7781409	-	ENSMUST00000141649.1,ENSMUSG00000085070.1	Gm13211	ENSMUSG00000085070.1	ENSMUST00000141649.1	lincRNA	chr2:7716151-7781408
chr2	8147863	8147963	+	MTEa	LTR	ERVL-MaLR	chr2	8147864	8147866	-	ENSMUST00000118295.1,ENSMUSG00000083269.1	Gm13254	ENSMUSG00000083269.1	ENSMUST00000118295.1	processed_pseudogene	chr2:8147212-8147865
chr2	9189447	9189561	+	MER20	DNA	hAT-Charlie	chr2	9189514	9189516	+	ENSMUST00000132414.1,ENSMUSG00000085580.1	1700061F12Rik	ENSMUSG00000085580.1	ENSMUST00000132414.1	lincRNA	chr2:9189515-9197477
chr2	9240732	9240876	+	B1_Mur3	SINE	Alu	chr2	9240831	9240833	-	ENSMUST00000179603.1,ENSMUSG00000095951.1	Gm23963	ENSMUSG00000095951.1	ENSMUST00000179603.1	miRNA	chr2:9240756-9240832
chr2	9881229	9881282	+	G-rich	Low_complexity	Low_complexity	chr2	9881251	9881253	+	ENSMUST00000026889.1,ENSMUSG00000025783.2	4930412O13Rik	ENSMUSG00000025783.2	ENSMUST00000026889.1	protein_coding	chr2:9881252-9883921
chr2	9918397	9918486	+	C-rich	Low_complexity	Low_complexity	chr2	9918407	9918409	-	ENSMUST00000114907.1,ENSMUSG00000025782.12	Taf3	ENSMUSG00000025782.12	ENSMUST00000114907.1	protein_coding	chr2:9916078-9918408
chr2	9941660	9941860	-	B3	SINE	B2	chr2	9941750	9941752	-	ENSMUST00000129720.1,ENSMUSG00000025782.12	Taf3	ENSMUSG00000025782.12	ENSMUST00000129720.1	protein_coding	chr2:9915291-9941751
chr2	10131044	10131128	+	B3	SINE	B2	chr2	10131074	10131076	-	ENSMUST00000155809.8,ENSMUSG00000037254.18	Itih2	ENSMUSG00000037254.18	ENSMUST00000155809.8	protein_coding	chr2:10108873-10131075
chr2	10465689	10465764	+	ID_B1	SINE	B4	chr2	10465759	10465761	+	ENSMUST00000116977.1,ENSMUSG00000080627.1	Gm22677	ENSMUSG00000080627.1	ENSMUST00000116977.1	miRNA	chr2:10465760-10465867
chr2	10466610	10466702	+	RLTR20C1_MM	LTR	ERVK	chr2	10466662	10466664	+	ENSMUST00000175052.1,ENSMUSG00000092793.1	Mir466m	ENSMUSG00000092793.1	ENSMUST00000175052.1	miRNA	chr2:10466663-10466746
chr2	10466928	10466984	+	RLTR20C1_MM	LTR	ERVK	chr2	10466943	10466945	+	ENSMUST00000104779.1,ENSMUSG00000077972.1	Mir466f-1	ENSMUSG00000077972.1	ENSMUST00000104779.1	miRNA	chr2:10466944-10467037
chr2	10467424	10467509	+	B1F	SINE	Alu	chr2	10467494	10467496	+	ENSMUST00000117003.1,ENSMUSG00000080653.1	Mir669e	ENSMUSG00000080653.1	ENSMUST00000117003.1	miRNA	chr2:10467495-10467613
chr2	10467439	10467521	+	ID_B1	SINE	B4	chr2	10467494	10467496	+	ENSMUST00000117003.1,ENSMUSG00000080653.1	Mir669e	ENSMUSG00000080653.1	ENSMUST00000117003.1	miRNA	chr2:10467495-10467613
chr2	10467788	10467892	-	RLTR17B_Mm	LTR	ERVK	chr2	10467789	10467791	+	ENSMUST00000102172.1,ENSMUSG00000076126.1	Mir669b	ENSMUSG00000076126.1	ENSMUST00000102172.1	miRNA	chr2:10467790-10467886
chr2	10468638	10468754	+	RLTR17B_Mm	LTR	ERVK	chr2	10468674	10468676	+	ENSMUST00000104805.1,ENSMUSG00000077998.1	Mir466f-2	ENSMUSG00000077998.1	ENSMUST00000104805.1	miRNA	chr2:10468675-10468768
chr2	10471636	10471728	-	RLTR17B_Mm	LTR	ERVK	chr2	10471643	10471645	+	ENSMUST00000116854.1,ENSMUSG00000080504.1	Mir669d-2	ENSMUSG00000080504.1	ENSMUST00000116854.1	miRNA	chr2:10471644-10471729
chr2	10471944	10472005	-	IMPB_01	Satellite	Satellite	chr2	10471952	10471954	+	ENSMUST00000104788.1,ENSMUSG00000077981.1	Mir466f-3	ENSMUSG00000077981.1	ENSMUST00000104788.1	miRNA	chr2:10471953-10472046
chr2	10472218	10472319	+	RMER12	LTR	ERVK	chr2	10472253	10472255	+	ENSMUST00000103795.2,ENSMUSG00000076983.2	Mir297a-2	ENSMUSG00000076983.2	ENSMUST00000103795.2	miRNA	chr2:10472254-10472343
chr2	10472511	10472618	+	RLTR17B_Mm	LTR	ERVK	chr2	10472539	10472541	+	ENSMUST00000104832.1,ENSMUSG00000078026.1	Mir466o	ENSMUSG00000078026.1	ENSMUST00000104832.1	miRNA	chr2:10472540-10472623
chr2	10473282	10473361	+	ID_B1	SINE	B4	chr2	10473350	10473352	+	ENSMUST00000179906.1,ENSMUSG00000094165.1	Gm26073	ENSMUSG00000094165.1	ENSMUST00000179906.1	miRNA	chr2:10473351-10473477
chr2	10474214	10474287	-	RLTR17B_Mm	LTR	ERVK	chr2	10474218	10474220	+	ENSMUST00000177988.2,ENSMUSG00000106608.1	Mir466b-1	ENSMUSG00000106608.1	ENSMUST00000177988.2	miRNA	chr2:10474219-10474300
chr2	10475229	10475300	+	ID_B1	SINE	B4	chr2	10475299	10475301	+	ENSMUST00000177742.1,ENSMUSG00000094297.1	Mir669k	ENSMUSG00000094297.1	ENSMUST00000177742.1	miRNA	chr2:10475300-10475426
chr2	10476620	10476725	+	(CATATA)n	Simple_repeat	Simple_repeat	chr2	10476627	10476629	+	ENSMUST00000103883.2,ENSMUSG00000095269.1	Mir466b-8	ENSMUSG00000095269.1	ENSMUST00000103883.2	miRNA	chr2:10476628-10476713
chr2	10477639	10477710	+	ID_B1	SINE	B4	chr2	10477709	10477711	+	ENSMUST00000179988.1,ENSMUSG00000095938.1	Gm25701	ENSMUSG00000095938.1	ENSMUST00000179988.1	miRNA	chr2:10477710-10477836
chr2	10477856	10477927	+	ID_B1	SINE	B4	chr2	10477909	10477911	+	ENSMUST00000179023.1,ENSMUSG00000095340.1	Mir669j	ENSMUSG00000095340.1	ENSMUST00000179023.1	miRNA	chr2:10477910-10478030
chr2	10479078	10479183	+	(CATATA)n	Simple_repeat	Simple_repeat	chr2	10479087	10479089	+	ENSMUST00000198862.1,ENSMUSG00000104933.1	Mir466e	ENSMUSG00000104933.1	ENSMUST00000198862.1	miRNA	chr2:10479088-10479171
chr2	10480094	10480165	+	ID_B1	SINE	B4	chr2	10480164	10480166	+	ENSMUST00000177835.1,ENSMUSG00000095336.1	Gm24315	ENSMUSG00000095336.1	ENSMUST00000177835.1	miRNA	chr2:10480165-10480291
chr2	10481529	10481604	+	RLTR17B_Mm	LTR	ERVK	chr2	10481533	10481535	+	ENSMUST00000200654.1,ENSMUSG00000104561.1	Mir466c-1	ENSMUSG00000104561.1	ENSMUST00000200654.1	miRNA	chr2:10481534-10481617
chr2	10482541	10482612	+	ID_B1	SINE	B4	chr2	10482611	10482613	+	ENSMUST00000179589.1,ENSMUSG00000094927.1	Gm24761	ENSMUSG00000094927.1	ENSMUST00000179589.1	miRNA	chr2:10482612-10482738
chr2	10483964	10484039	+	RLTR17B_Mm	LTR	ERVK	chr2	10483965	10483967	+	ENSMUST00000180211.1,ENSMUSG00000094659.1	Mir466c-2	ENSMUSG00000094659.1	ENSMUST00000180211.1	miRNA	chr2:10483966-10484055
chr2	10484980	10485051	+	ID_B1	SINE	B4	chr2	10485050	10485052	+	ENSMUST00000116917.1,ENSMUSG00000096651.1	Gm25680	ENSMUSG00000096651.1	ENSMUST00000116917.1	miRNA	chr2:10485051-10485176
chr2	10485196	10485267	+	ID_B1	SINE	B4	chr2	10485249	10485251	+	ENSMUST00000177630.1,ENSMUSG00000094101.1	Gm22775	ENSMUSG00000094101.1	ENSMUST00000177630.1	miRNA	chr2:10485250-10485369
chr2	10486416	10486495	+	(TATATG)n	Simple_repeat	Simple_repeat	chr2	10486422	10486424	+	ENSMUST00000178801.1,ENSMUSG00000096239.1	Mir466b-4	ENSMUSG00000096239.1	ENSMUST00000178801.1	miRNA	chr2:10486423-10486512
chr2	10488884	10488957	-	RLTR17B_Mm	LTR	ERVK	chr2	10488886	10488888	+	ENSMUST00000103900.2,ENSMUSG00000096113.1	Mir466b-5	ENSMUSG00000096113.1	ENSMUST00000103900.2	miRNA	chr2:10488887-10488974
chr2	10489900	10489971	+	ID_B1	SINE	B4	chr2	10489970	10489972	+	ENSMUST00000116949.1,ENSMUSG00000096782.1	Gm24640	ENSMUSG00000096782.1	ENSMUST00000116949.1	miRNA	chr2:10489971-10490096
chr2	10490113	10490184	+	ID_B1	SINE	B4	chr2	10490166	10490168	+	ENSMUST00000179213.1,ENSMUSG00000096835.1	Gm23288	ENSMUSG00000096835.1	ENSMUST00000179213.1	miRNA	chr2:10490167-10490287
chr2	10491334	10491409	+	RLTR17B_Mm	LTR	ERVK	chr2	10491335	10491337	+	ENSMUST00000178951.1,ENSMUSG00000095536.1	Gm25285	ENSMUSG00000095536.1	ENSMUST00000178951.1	miRNA	chr2:10491336-10491425
chr2	10492350	10492421	+	ID_B1	SINE	B4	chr2	10492420	10492422	+	ENSMUST00000116962.1,ENSMUSG00000096748.1	Gm22635	ENSMUSG00000096748.1	ENSMUST00000116962.1	miRNA	chr2:10492421-10492546
chr2	10492566	10492637	+	ID_B1	SINE	B4	chr2	10492619	10492621	+	ENSMUST00000180120.1,ENSMUSG00000096880.1	Gm23569	ENSMUSG00000096880.1	ENSMUST00000180120.1	miRNA	chr2:10492620-10492739
chr2	10493791	10493870	+	(TATATG)n	Simple_repeat	Simple_repeat	chr2	10493797	10493799	+	ENSMUST00000180061.1,ENSMUSG00000094261.1	Mir466b-6	ENSMUSG00000094261.1	ENSMUST00000180061.1	miRNA	chr2:10493798-10493887
chr2	10496265	10496338	-	RLTR17B_Mm	LTR	ERVK	chr2	10496267	10496269	+	ENSMUST00000103804.2,ENSMUSG00000096360.1	Mir466b-7	ENSMUSG00000096360.1	ENSMUST00000103804.2	miRNA	chr2:10496268-10496355
chr2	10497281	10497352	+	ID_B1	SINE	B4	chr2	10497351	10497353	+	ENSMUST00000116990.1,ENSMUSG00000094457.1	Gm22626	ENSMUSG00000094457.1	ENSMUST00000116990.1	miRNA	chr2:10497352-10497477
chr2	10497494	10497565	+	ID_B1	SINE	B4	chr2	10497547	10497549	+	ENSMUST00000178419.1,ENSMUSG00000093914.1	Gm22166	ENSMUSG00000093914.1	ENSMUST00000178419.1	miRNA	chr2:10497548-10497668
chr2	10498680	10498753	-	RLTR17B_Mm	LTR	ERVK	chr2	10498684	10498686	+	ENSMUST00000103778.2,ENSMUSG00000076966.2	Mir466b-2	ENSMUSG00000076966.2	ENSMUST00000103778.2	miRNA	chr2:10498685-10498766
chr2	10499692	10499763	+	ID_B1	SINE	B4	chr2	10499762	10499764	+	ENSMUST00000180073.1,ENSMUSG00000096889.1	Gm23571	ENSMUSG00000096889.1	ENSMUST00000180073.1	miRNA	chr2:10499763-10499889
chr2	10501102	10501181	+	(TATATG)n	Simple_repeat	Simple_repeat	chr2	10501108	10501110	+	ENSMUST00000103791.3,ENSMUSG00000096053.1	Gm25943	ENSMUSG00000096053.1	ENSMUST00000103791.3	miRNA	chr2:10501109-10501198
chr2	10502120	10502191	+	ID_B1	SINE	B4	chr2	10502190	10502192	+	ENSMUST00000179957.1,ENSMUSG00000095051.1	Gm25673	ENSMUSG00000095051.1	ENSMUST00000179957.1	miRNA	chr2:10502191-10502317
chr2	10503560	10503630	-	RLTR17B_Mm	LTR	ERVK	chr2	10503564	10503566	+	ENSMUST00000103806.2,ENSMUSG00000076994.2	Mir466b-3	ENSMUSG00000076994.2	ENSMUST00000103806.2	miRNA	chr2:10503565-10503645
chr2	10505711	10505808	+	(TATATG)n	Simple_repeat	Simple_repeat	chr2	10505720	10505722	+	ENSMUST00000103760.2,ENSMUSG00000076948.2	Mir467e	ENSMUSG00000076948.2	ENSMUST00000103760.2	miRNA	chr2:10505721-10505807
chr2	10506005	10506077	-	RLTR17B_Mm	LTR	ERVK	chr2	10506005	10506007	+	ENSMUST00000103925.2,ENSMUSG00000077113.2	Mir466p	ENSMUSG00000077113.2	ENSMUST00000103925.2	miRNA	chr2:10506006-10506094
chr2	10506484	10506559	+	ID_B1	SINE	B4	chr2	10506554	10506556	+	ENSMUST00000117002.2,ENSMUSG00000094330.1	Gm22051	ENSMUSG00000094330.1	ENSMUST00000117002.2	miRNA	chr2:10506555-10506681
chr2	10507913	10507986	-	RLTR17B_Mm	LTR	ERVK	chr2	10507917	10507919	+	ENSMUST00000093591.1,ENSMUSG00000070099.1	Mir466	ENSMUSG00000070099.1	ENSMUST00000093591.1	miRNA	chr2:10507918-10507990
chr2	10508382	10508457	+	ID_B1	SINE	B4	chr2	10508452	10508454	+	ENSMUST00000116908.1,ENSMUSG00000080558.1	Gm22091	ENSMUSG00000080558.1	ENSMUST00000116908.1	miRNA	chr2:10508453-10508579
chr2	10508999	10509077	+	RMER12C	LTR	ERVK	chr2	10509015	10509017	+	ENSMUST00000103788.2,ENSMUSG00000076976.2	Mir297c	ENSMUSG00000076976.2	ENSMUST00000103788.2	miRNA	chr2:10509016-10509113
chr2	10509007	10509100	-	RLTR17B_Mm	LTR	ERVK	chr2	10509015	10509017	+	ENSMUST00000103788.2,ENSMUSG00000076976.2	Mir297c	ENSMUSG00000076976.2	ENSMUST00000103788.2	miRNA	chr2:10509016-10509113
chr2	10509172	10509344	+	RLTR20A4	LTR	ERVK	chr2	10509295	10509297	+	ENSMUST00000084675.2,ENSMUSG00000076118.1	Mir669c	ENSMUSG00000076118.1	ENSMUST00000084675.2	miRNA	chr2:10509296-10509404
chr2	10511368	10511483	+	(CATATA)n	Simple_repeat	Simple_repeat	chr2	10511369	10511371	+	ENSMUST00000158208.1,ENSMUSG00000088833.1	Gm23542	ENSMUSG00000088833.1	ENSMUST00000158208.1	miRNA	chr2:10511370-10511465
chr2	10511958	10512030	+	RLTR17B_Mm	LTR	ERVK	chr2	10511966	10511968	+	ENSMUST00000104837.1,ENSMUSG00000078031.1	Mir466d	ENSMUSG00000078031.1	ENSMUST00000104837.1	miRNA	chr2:10511967-10512062
chr2	10512789	10512839	+	(TG)n	Simple_repeat	Simple_repeat	chr2	10512789	10512791	+	ENSMUST00000158945.1,ENSMUSG00000089570.1	Mir669m-1	ENSMUSG00000089570.1	ENSMUST00000158945.1	miRNA	chr2:10512790-10512887
chr2	10513427	10513533	-	RLTR17B_Mm	LTR	ERVK	chr2	10513433	10513435	+	ENSMUST00000158355.1,ENSMUSG00000088980.1	Mir669m-2	ENSMUSG00000088980.1	ENSMUST00000158355.1	miRNA	chr2:10513434-10513531
chr2	10513738	10513849	+	RLTR17B_Mm	LTR	ERVK	chr2	10513740	10513742	+	ENSMUST00000104798.1,ENSMUSG00000077991.1	Mir466n	ENSMUSG00000077991.1	ENSMUST00000104798.1	miRNA	chr2:10513741-10513834
chr2	10514577	10514662	-	RLTR17B_Mm	LTR	ERVK	chr2	10514594	10514596	+	ENSMUST00000104831.1,ENSMUSG00000078025.1	Mir466g	ENSMUSG00000078025.1	ENSMUST00000104831.1	miRNA	chr2:10514595-10514674
chr2	10514595	10514664	+	RLTR17B_Mm	LTR	ERVK	chr2	10514594	10514596	+	ENSMUST00000104831.1,ENSMUSG00000078025.1	Mir466g	ENSMUSG00000078025.1	ENSMUST00000104831.1	miRNA	chr2:10514595-10514674
chr2	10514870	10514955	+	RLTR17B_Mm	LTR	ERVK	chr2	10514890	10514892	+	ENSMUST00000104748.1,ENSMUSG00000077941.1	Mir466h	ENSMUSG00000077941.1	ENSMUST00000104748.1	miRNA	chr2:10514891-10514971
chr2	10514888	10514987	-	RLTR17B_Mm	LTR	ERVK	chr2	10514890	10514892	+	ENSMUST00000104748.1,ENSMUSG00000077941.1	Mir466h	ENSMUSG00000077941.1	ENSMUST00000104748.1	miRNA	chr2:10514891-10514971
chr2	10516097	10516146	+	(TATATG)n	Simple_repeat	Simple_repeat	chr2	10516096	10516098	+	ENSMUST00000104866.1,ENSMUSG00000078060.1	Mir466l	ENSMUSG00000078060.1	ENSMUST00000104866.1	miRNA	chr2:10516097-10516217
chr2	10517534	10517609	+	ID_B1	SINE	B4	chr2	10517603	10517605	+	ENSMUST00000117007.1,ENSMUSG00000080657.1	Mir669i	ENSMUSG00000080657.1	ENSMUST00000117007.1	miRNA	chr2:10517604-10517730
chr2	10518084	10518159	+	ID_B1	SINE	B4	chr2	10518154	10518156	+	ENSMUST00000116944.1,ENSMUSG00000080594.1	Mir669h	ENSMUSG00000080594.1	ENSMUST00000116944.1	miRNA	chr2:10518155-10518279
chr2	11013756	11014049	-	RLTR27	LTR	ERVK	chr2	11013917	11013919	-	ENSMUST00000192542.1,ENSMUSG00000102734.1	Gm37343	ENSMUSG00000102734.1	ENSMUST00000192542.1	TEC	chr2:11013808-11013918
chr2	11036727	11037223	+	RLTR16	LTR	ERVK	chr2	11036872	11036874	+	ENSMUST00000138416.2,ENSMUSG00000085257.2	Gm13264	ENSMUSG00000085257.2	ENSMUST00000138416.2	lincRNA	chr2:11036873-11060129
chr2	11087833	11087913	-	U4	snRNA	snRNA	chr2	11087912	11087914	-	ENSMUST00000122611.1,ENSMUSG00000084560.1	Gm26478	ENSMUSG00000084560.1	ENSMUST00000122611.1	snRNA	chr2:11087781-11087913
chr2	11087913	11088028	-	L1_Rod	LINE	L1	chr2	11087912	11087914	-	ENSMUST00000122611.1,ENSMUSG00000084560.1	Gm26478	ENSMUSG00000084560.1	ENSMUST00000122611.1	snRNA	chr2:11087781-11087913
chr2	11250433	11250477	+	C-rich	Low_complexity	Low_complexity	chr2	11250457	11250459	+	ENSMUST00000195628.1,ENSMUSG00000026778.13	Prkcq	ENSMUSG00000026778.13	ENSMUST00000195628.1	protein_coding	chr2:11250458-11300699
chr2	11319845	11319972	-	B4	SINE	B4	chr2	11319873	11319875	-	ENSMUST00000195716.1,ENSMUSG00000102196.1	Gm38171	ENSMUSG00000102196.1	ENSMUST00000195716.1	lincRNA	chr2:11315372-11319874
chr2	11367344	11367653	-	MTD	LTR	ERVL-MaLR	chr2	11367450	11367452	-	ENSMUST00000192432.1,ENSMUSG00000103223.1	Gm37730	ENSMUSG00000103223.1	ENSMUST00000192432.1	TEC	chr2:11365241-11367451
chr2	11384454	11384925	-	RLTR11A	LTR	ERVK	chr2	11384906	11384908	-	ENSMUST00000193857.1,ENSMUSG00000103321.1	4933403L11Rik	ENSMUSG00000103321.1	ENSMUST00000193857.1	TEC	chr2:11383787-11384907
chr2	11603906	11604446	-	MT2B	LTR	ERVL	chr2	11604152	11604154	-	ENSMUST00000156469.1,ENSMUSG00000037197.11	Rbm17	ENSMUSG00000037197.11	ENSMUST00000156469.1	protein_coding	chr2:11596682-11604153
chr2	11608580	11608770	-	B2_Mm1a	SINE	B2	chr2	11608695	11608697	-	ENSMUST00000117797.2,ENSMUSG00000082727.2	Gm13260	ENSMUSG00000082727.2	ENSMUST00000117797.2	processed_pseudogene	chr2:11607433-11608696
chr2	11626238	11626322	+	L1MC1	LINE	L1	chr2	11626263	11626265	-	ENSMUST00000166779.1,ENSMUSG00000091312.1	Gm17490	ENSMUSG00000091312.1	ENSMUST00000166779.1	protein_coding	chr2:11625606-11626264
chr2	11679606	11679863	-	RMER15	LTR	ERVL	chr2	11679707	11679709	+	ENSMUST00000195427.1,ENSMUSG00000026770.5	Il2ra	ENSMUSG00000026770.5	ENSMUST00000195427.1	protein_coding	chr2:11679708-11680209
chr2	12129537	12130533	+	L1Md_A	LINE	L1	chr2	12129741	12129743	-	ENSMUST00000192947.1,ENSMUSG00000104174.1	Gm37701	ENSMUSG00000104174.1	ENSMUST00000192947.1	TEC	chr2:12128643-12129742
chr2	12358368	12358536	+	MT2B	LTR	ERVL	chr2	12358495	12358497	-	ENSMUST00000195409.1,ENSMUSG00000102630.1	Gm37289	ENSMUSG00000102630.1	ENSMUST00000195409.1	TEC	chr2:12357095-12358496
chr2	12366021	12366215	-	ID_B1	SINE	B4	chr2	12366180	12366182	-	ENSMUST00000195758.1,ENSMUSG00000026767.12	Mindy3	ENSMUSG00000026767.12	ENSMUST00000195758.1	protein_coding	chr2:12364337-12366181
chr2	13033246	13036179	-	L1VL2	LINE	L1	chr2	13036125	13036127	+	ENSMUST00000193263.1,ENSMUSG00000103143.1	Gm37742	ENSMUSG00000103143.1	ENSMUST00000193263.1	TEC	chr2:13036126-13040104
chr2	13459466	13459498	+	(CAAA)n	Simple_repeat	Simple_repeat	chr2	13459479	13459481	-	ENSMUST00000148506.1,ENSMUSG00000026726.10	Cubn	ENSMUSG00000026726.10	ENSMUST00000148506.1	protein_coding	chr2:13456640-13459480
chr2	13579197	13579369	+	(TTC)n	Simple_repeat	Simple_repeat	chr2	13579368	13579370	+	ENSMUST00000148248.2,ENSMUSG00000026728.9	Vim	ENSMUSG00000026728.9	ENSMUST00000148248.2	protein_coding	chr2:13579369-13582478
chr2	14055985	14056070	+	GC_rich	Low_complexity	Low_complexity	chr2	14056035	14056037	-	ENSMUST00000131730.6,ENSMUSG00000063275.15	Hacd1	ENSMUSG00000063275.15	ENSMUST00000131730.6	protein_coding	chr2:13850282-14056036
chr2	14055985	14056070	+	GC_rich	Low_complexity	Low_complexity	chr2	14056019	14056021	-	ENSMUST00000114753.7,ENSMUSG00000063275.15	Hacd1	ENSMUSG00000063275.15	ENSMUST00000114753.7	protein_coding	chr2:14026831-14056020
chr2	14055985	14056070	+	GC_rich	Low_complexity	Low_complexity	chr2	14056019	14056021	-	ENSMUST00000091429.11,ENSMUSG00000063275.15	Hacd1	ENSMUSG00000063275.15	ENSMUST00000091429.11	protein_coding	chr2:14026831-14056020
chr2	14345369	14345691	-	RLTRETN_Mm	LTR	ERVK	chr2	14345676	14345678	+	ENSMUST00000195680.1,ENSMUSG00000103475.1	Gm37697	ENSMUSG00000103475.1	ENSMUST00000195680.1	TEC	chr2:14345677-14347520
chr2	14506917	14513172	-	L1_Mus3	LINE	L1	chr2	14512590	14512592	+	ENSMUST00000192745.5,ENSMUSG00000084901.6	Gm13266	ENSMUSG00000084901.6	ENSMUST00000192745.5	processed_transcript	chr2:14512591-14535787
chr2	14506917	14513172	-	L1_Mus3	LINE	L1	chr2	14512590	14512592	+	ENSMUST00000141869.6,ENSMUSG00000084901.6	Gm13266	ENSMUSG00000084901.6	ENSMUST00000141869.6	processed_transcript	chr2:14512591-14542811
chr2	14506917	14513172	-	L1_Mus3	LINE	L1	chr2	14512598	14512600	+	ENSMUST00000193364.1,ENSMUSG00000084901.6	Gm13266	ENSMUSG00000084901.6	ENSMUST00000193364.1	processed_transcript	chr2:14512599-14535607
chr2	14611002	14611356	-	Lx8	LINE	L1	chr2	14611216	14611218	+	ENSMUST00000192112.1,ENSMUSG00000104153.1	Gm38105	ENSMUSG00000104153.1	ENSMUST00000192112.1	TEC	chr2:14611217-14613837
chr2	14673110	14673650	-	Lx7	LINE	L1	chr2	14673403	14673405	+	ENSMUST00000193601.1,ENSMUSG00000104034.1	2900092N22Rik	ENSMUSG00000104034.1	ENSMUST00000193601.1	TEC	chr2:14673404-14674812
chr2	14737907	14738126	+	URR1A	DNA	hAT-Charlie	chr2	14737926	14737928	-	ENSMUST00000194987.1,ENSMUSG00000103050.1	Gm38273	ENSMUSG00000103050.1	ENSMUST00000194987.1	TEC	chr2:14735546-14737927
chr2	14766939	14767290	-	RLTR10	LTR	ERVK	chr2	14767023	14767025	-	ENSMUST00000147019.3,ENSMUSG00000087086.7	Gm13269	ENSMUSG00000087086.7	ENSMUST00000147019.3	antisense	chr2:14740372-14767024
chr2	14812533	14812543	+	(GCTG)n	Simple_repeat	Simple_repeat	chr2	14812537	14812539	-	ENSMUST00000140537.1,ENSMUSG00000085281.3	Gm13316	ENSMUSG00000085281.3	ENSMUST00000140537.1	processed_pseudogene	chr2:14811848-14812538
chr2	14873626	14873667	+	(TG)n	Simple_repeat	Simple_repeat	chr2	14873654	14873656	+	ENSMUST00000114718.7,ENSMUSG00000057914.15	Cacnb2	ENSMUSG00000057914.15	ENSMUST00000114718.7	protein_coding	chr2:14873655-14972075
chr2	14873626	14873667	+	(TG)n	Simple_repeat	Simple_repeat	chr2	14873655	14873657	+	ENSMUST00000191903.5,ENSMUSG00000057914.15	Cacnb2	ENSMUSG00000057914.15	ENSMUST00000191903.5	protein_coding	chr2:14873656-14972160
chr2	14944592	14945745	+	Lx9	LINE	L1	chr2	14944907	14944909	+	ENSMUST00000194451.1,ENSMUSG00000102673.1	Gm37437	ENSMUSG00000102673.1	ENSMUST00000194451.1	TEC	chr2:14944908-14946844
chr2	15530953	15531291	-	Lx5c	LINE	L1	chr2	15531112	15531114	+	ENSMUST00000192668.1,ENSMUSG00000103356.1	Gm37595	ENSMUSG00000103356.1	ENSMUST00000192668.1	TEC	chr2:15531113-15532854
chr2	16021235	16028795	-	RLTR4_MM-int	LTR	ERV1	chr2	16023424	16023426	-	ENSMUST00000193596.1,ENSMUSG00000103865.1	Gm37416	ENSMUSG00000103865.1	ENSMUST00000193596.1	TEC	chr2:16023108-16023425
chr2	16959703	16960212	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr2	16960017	16960019	-	ENSMUST00000103762.1,ENSMUSG00000076950.1	Gm24933	ENSMUSG00000076950.1	ENSMUST00000103762.1	miRNA	chr2:16959909-16960018
chr2	18129449	18129596	+	B1_Mus1	SINE	Alu	chr2	18129576	18129578	-	ENSMUST00000175073.1,ENSMUSG00000092814.1	Gm23638	ENSMUSG00000092814.1	ENSMUST00000175073.1	miRNA	chr2:18129452-18129577
chr2	18158686	18158791	+	U6	snRNA	snRNA	chr2	18158686	18158688	+	ENSMUST00000083030.1,ENSMUSG00000064964.1	Gm25147	ENSMUSG00000064964.1	ENSMUST00000083030.1	snRNA	chr2:18158687-18158791
chr2	18249829	18249932	+	RMER12C	LTR	ERVK	chr2	18249842	18249844	-	ENSMUST00000120519.2,ENSMUSG00000083070.2	Gm13350	ENSMUSG00000083070.2	ENSMUST00000120519.2	processed_pseudogene	chr2:18249365-18249843
chr2	18310133	18310312	-	B3	SINE	B2	chr2	18310257	18310259	-	ENSMUST00000164606.1,ENSMUSG00000026740.12	Dnajc1	ENSMUSG00000026740.12	ENSMUST00000164606.1	protein_coding	chr2:18306638-18310258
chr2	18672374	18672402	+	GC_rich	Low_complexity	Low_complexity	chr2	18672383	18672385	+	ENSMUST00000171845.7,ENSMUSG00000051154.11	Commd3	ENSMUSG00000051154.11	ENSMUST00000171845.7	protein_coding	chr2:18672384-18676230
chr2	18677177	18677360	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	18677279	18677281	+	ENSMUST00000132014.1,ENSMUSG00000026739.13	Bmi1	ENSMUSG00000026739.13	ENSMUST00000132014.1	protein_coding	chr2:18677280-18682365
chr2	18680961	18680998	+	(TCCCC)n	Simple_repeat	Simple_repeat	chr2	18680993	18680995	+	ENSMUST00000134734.7,ENSMUSG00000026739.13	Bmi1	ENSMUSG00000026739.13	ENSMUST00000134734.7	protein_coding	chr2:18680994-18683030
chr2	19636980	19637198	+	MLT1F	LTR	ERVL-MaLR	chr2	19636985	19636987	-	ENSMUST00000147324.1,ENSMUSG00000086621.1	Gm13348	ENSMUSG00000086621.1	ENSMUST00000147324.1	antisense	chr2:19634034-19636986
chr2	19888550	19889206	-	RMER19C	LTR	ERVK	chr2	19888652	19888654	+	ENSMUST00000198109.1,ENSMUSG00000105927.1	Gm44457	ENSMUSG00000105927.1	ENSMUST00000198109.1	miRNA	chr2:19888653-19888728
chr2	20280518	20280625	+	U6	snRNA	snRNA	chr2	20280518	20280520	+	ENSMUST00000083319.1,ENSMUSG00000065253.1	Gm23970	ENSMUSG00000065253.1	ENSMUST00000083319.1	snRNA	chr2:20280519-20280625
chr2	20289884	20289976	-	MIR3	SINE	MIR	chr2	20289912	20289914	+	ENSMUST00000146881.7,ENSMUSG00000036617.16	Etl4	ENSMUSG00000036617.16	ENSMUST00000146881.7	protein_coding	chr2:20289913-20662052
chr2	20289884	20289976	-	MIR3	SINE	MIR	chr2	20289912	20289914	+	ENSMUST00000114627.7,ENSMUSG00000036617.16	Etl4	ENSMUSG00000036617.16	ENSMUST00000114627.7	protein_coding	chr2:20289913-20810535
chr2	20426825	20427318	-	MT2_Mm	LTR	ERVL	chr2	20426989	20426991	-	ENSMUST00000129994.7,ENSMUSG00000085477.7	Gm13335	ENSMUSG00000085477.7	ENSMUST00000129994.7	antisense	chr2:20420570-20426990
chr2	20432769	20433262	-	MT2_Mm	LTR	ERVL	chr2	20432933	20432935	-	ENSMUST00000149398.1,ENSMUSG00000085477.7	Gm13335	ENSMUSG00000085477.7	ENSMUST00000149398.1	antisense	chr2:20420570-20432934
chr2	20559908	20559944	+	(TCTG)n	Simple_repeat	Simple_repeat	chr2	20559934	20559936	+	ENSMUST00000136870.1,ENSMUSG00000036617.16	Etl4	ENSMUSG00000036617.16	ENSMUST00000136870.1	protein_coding	chr2:20559935-20709635
chr2	20931349	20931497	+	B1_Mus1	SINE	Alu	chr2	20931388	20931390	-	ENSMUST00000124322.1,ENSMUSG00000085206.1	Gm13380	ENSMUSG00000085206.1	ENSMUST00000124322.1	sense_intronic	chr2:20921860-20931389
chr2	20968843	20968884	+	GC_rich	Low_complexity	Low_complexity	chr2	20968880	20968882	-	ENSMUST00000114594.7,ENSMUSG00000036591.16	Arhgap21	ENSMUSG00000036591.16	ENSMUST00000114594.7	protein_coding	chr2:20847919-20968881
chr2	20968843	20968884	+	GC_rich	Low_complexity	Low_complexity	chr2	20968879	20968881	-	ENSMUST00000173654.1,ENSMUSG00000036591.16	Arhgap21	ENSMUSG00000036591.16	ENSMUST00000173654.1	protein_coding	chr2:20967690-20968880
chr2	21171077	21171166	+	5S	rRNA	rRNA	chr2	21171082	21171084	+	ENSMUST00000158847.1,ENSMUSG00000089472.1	Gm25368	ENSMUSG00000089472.1	ENSMUST00000158847.1	rRNA	chr2:21171083-21171213
chr2	22227467	22227505	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	22227502	22227504	+	ENSMUST00000044749.13,ENSMUSG00000025716.14	Myo3a	ENSMUSG00000025716.14	ENSMUST00000044749.13	protein_coding	chr2:22227503-22618252
chr2	22227467	22227505	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	22227504	22227506	+	ENSMUST00000138850.7,ENSMUSG00000025716.14	Myo3a	ENSMUSG00000025716.14	ENSMUST00000138850.7	protein_coding	chr2:22227505-22283571
chr2	22227467	22227505	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	22227504	22227506	+	ENSMUST00000142435.1,ENSMUSG00000025716.14	Myo3a	ENSMUSG00000025716.14	ENSMUST00000142435.1	protein_coding	chr2:22227505-22293902
chr2	22666654	22666710	+	(TG)n	Simple_repeat	Simple_repeat	chr2	22666657	22666659	+	ENSMUST00000175070.1,ENSMUSG00000092811.1	Gm23636	ENSMUSG00000092811.1	ENSMUST00000175070.1	miRNA	chr2:22666658-22666752
chr2	22755230	22756112	+	RMER1A	Other	Other	chr2	22755983	22755985	+	ENSMUST00000135792.1,ENSMUSG00000085353.2	1700092C17Rik	ENSMUSG00000085353.2	ENSMUST00000135792.1	lincRNA	chr2:22755984-22762273
chr2	23040196	23040250	+	CT-rich	Low_complexity	Low_complexity	chr2	23040240	23040242	-	ENSMUST00000140164.7,ENSMUSG00000058835.14	Abi1	ENSMUSG00000058835.14	ENSMUST00000140164.7	protein_coding	chr2:22940073-23040241
chr2	23040196	23040250	+	CT-rich	Low_complexity	Low_complexity	chr2	23040240	23040242	-	ENSMUST00000149719.7,ENSMUSG00000058835.14	Abi1	ENSMUSG00000058835.14	ENSMUST00000149719.7	protein_coding	chr2:22940086-23040241
chr2	23040196	23040250	+	CT-rich	Low_complexity	Low_complexity	chr2	23040229	23040231	-	ENSMUST00000078977.13,ENSMUSG00000058835.14	Abi1	ENSMUSG00000058835.14	ENSMUST00000078977.13	protein_coding	chr2:22940369-23040230
chr2	23040196	23040250	+	CT-rich	Low_complexity	Low_complexity	chr2	23040218	23040220	-	ENSMUST00000178908.1,ENSMUSG00000058835.14	Abi1	ENSMUSG00000058835.14	ENSMUST00000178908.1	protein_coding	chr2:22941233-23040219
chr2	23079639	23079752	+	B1_Mus1	SINE	Alu	chr2	23079726	23079728	+	ENSMUST00000226938.1,ENSMUSG00000026781.17	Acbd5	ENSMUSG00000026781.17	ENSMUST00000226938.1	protein_coding	chr2:23079727-23081164
chr2	23097924	23098069	-	B1_Mur2	SINE	Alu	chr2	23098068	23098070	+	ENSMUST00000227489.1,ENSMUSG00000026781.17	Acbd5	ENSMUSG00000026781.17	ENSMUST00000227489.1	protein_coding	chr2:23098069-23101427
chr2	23098984	23099009	+	(T)n	Simple_repeat	Simple_repeat	chr2	23098989	23098991	+	ENSMUST00000227612.1,ENSMUSG00000026781.17	Acbd5	ENSMUSG00000026781.17	ENSMUST00000227612.1	protein_coding	chr2:23098990-23113364
chr2	23823045	23823236	+	7SK	RNA	RNA	chr2	23823052	23823054	+	ENSMUST00000157743.1,ENSMUSG00000088368.1	Gm26323	ENSMUSG00000088368.1	ENSMUST00000157743.1	misc_RNA	chr2:23823053-23823227
chr2	24276937	24276993	+	GA-rich	Low_complexity	Low_complexity	chr2	24276953	24276955	+	ENSMUST00000168941.7,ENSMUSG00000026983.10	Il1f5	ENSMUSG00000026983.10	ENSMUST00000168941.7	protein_coding	chr2:24276954-24282432
chr2	24276937	24276993	+	GA-rich	Low_complexity	Low_complexity	chr2	24276953	24276955	+	ENSMUST00000028360.7,ENSMUSG00000026983.10	Il1f5	ENSMUSG00000026983.10	ENSMUST00000028360.7	protein_coding	chr2:24276954-24283426
chr2	24322163	24322501	+	RLTR43C	LTR	ERVK	chr2	24322423	24322425	+	ENSMUST00000149429.1,ENSMUSG00000085999.1	Gm13411	ENSMUSG00000085999.1	ENSMUST00000149429.1	lincRNA	chr2:24322424-24322956
chr2	24588208	24588658	+	RCHARR1	DNA	hAT-Charlie	chr2	24588565	24588567	+	ENSMUST00000194131.1,ENSMUSG00000102591.1	Gm38383	ENSMUSG00000102591.1	ENSMUST00000194131.1	TEC	chr2:24588566-24591225
chr2	24594513	24595799	+	RodERV21-int	LTR	ERV1	chr2	24594512	24594514	-	ENSMUST00000117264.1,ENSMUSG00000084241.1	Gm13416	ENSMUSG00000084241.1	ENSMUST00000117264.1	processed_pseudogene	chr2:24592902-24594513
chr2	24601364	24601593	+	7SK	RNA	RNA	chr2	24601364	24601366	+	ENSMUST00000157946.1,ENSMUSG00000088571.1	Gm25455	ENSMUSG00000088571.1	ENSMUST00000157946.1	misc_RNA	chr2:24601365-24601689
chr2	24876295	24876337	+	(CA)n	Simple_repeat	Simple_repeat	chr2	24876328	24876330	-	ENSMUST00000192397.1,ENSMUSG00000103162.1	Gm38147	ENSMUSG00000103162.1	ENSMUST00000192397.1	TEC	chr2:24874532-24876329
chr2	24891686	24891944	+	MLT1H	LTR	ERVL-MaLR	chr2	24891702	24891704	-	ENSMUST00000114418.9,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000114418.9	protein_coding	chr2:24790795-24891703
chr2	24893533	24893885	-	ORR1C2	LTR	ERVL-MaLR	chr2	24893865	24893867	-	ENSMUST00000192134.1,ENSMUSG00000102875.1	Gm37139	ENSMUSG00000102875.1	ENSMUST00000192134.1	TEC	chr2:24889448-24893866
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919613	24919615	-	ENSMUST00000147147.7,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000147147.7	protein_coding	chr2:24789928-24919614
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919573	24919575	-	ENSMUST00000046227.11,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000046227.11	protein_coding	chr2:24791143-24919574
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919573	24919575	-	ENSMUST00000114432.8,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000114432.8	protein_coding	chr2:24791143-24919574
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919590	24919592	-	ENSMUST00000102938.9,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000102938.9	protein_coding	chr2:24791157-24919591
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919586	24919588	-	ENSMUST00000091348.10,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000091348.10	protein_coding	chr2:24791215-24919587
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919589	24919591	-	ENSMUST00000200655.4,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000200655.4	protein_coding	chr2:24823321-24919590
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919578	24919580	-	ENSMUST00000139000.3,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000139000.3	protein_coding	chr2:24835102-24919579
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919606	24919608	-	ENSMUST00000152161.7,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000152161.7	protein_coding	chr2:24863296-24919607
chr2	24919574	24919639	+	GC_rich	Low_complexity	Low_complexity	chr2	24919597	24919599	-	ENSMUST00000150379.1,ENSMUSG00000036893.17	Ehmt1	ENSMUSG00000036893.17	ENSMUST00000150379.1	protein_coding	chr2:24863893-24919598
chr2	24936811	24936958	-	B1_Mus1	SINE	Alu	chr2	24936830	24936832	+	ENSMUST00000175449.1,ENSMUSG00000093190.1	Gm22875	ENSMUSG00000093190.1	ENSMUST00000175449.1	miRNA	chr2:24936831-24936956
chr2	24995635	24995730	+	B4	SINE	B4	chr2	24995664	24995666	+	ENSMUST00000145508.1,ENSMUSG00000036833.16	Pnpla7	ENSMUSG00000036833.16	ENSMUST00000145508.1	protein_coding	chr2:24995665-24998680
chr2	25006155	25006258	-	U6	snRNA	snRNA	chr2	25006257	25006259	-	ENSMUST00000083864.1,ENSMUSG00000065798.1	Gm25518	ENSMUSG00000065798.1	ENSMUST00000083864.1	snRNA	chr2:25006152-25006258
chr2	25006258	25006378	+	RLTR20B2	LTR	ERVK	chr2	25006257	25006259	-	ENSMUST00000083864.1,ENSMUSG00000065798.1	Gm25518	ENSMUSG00000065798.1	ENSMUST00000083864.1	snRNA	chr2:25006152-25006258
chr2	25039421	25039575	+	B2_Mm2	SINE	B2	chr2	25039505	25039507	+	ENSMUST00000132082.7,ENSMUSG00000036833.16	Pnpla7	ENSMUSG00000036833.16	ENSMUST00000132082.7	protein_coding	chr2:25039506-25054057
chr2	25051840	25051930	-	L3b	LINE	CR1	chr2	25051907	25051909	+	ENSMUST00000138536.1,ENSMUSG00000036833.16	Pnpla7	ENSMUSG00000036833.16	ENSMUST00000138536.1	protein_coding	chr2:25051908-25052851
chr2	25059798	25059859	+	MIR	SINE	MIR	chr2	25059810	25059812	+	ENSMUST00000184681.1,ENSMUSG00000099320.1	Mir7664	ENSMUSG00000099320.1	ENSMUST00000184681.1	miRNA	chr2:25059811-25059873
chr2	25183290	25183341	+	AT_rich	Low_complexity	Low_complexity	chr2	25183338	25183340	-	ENSMUST00000195193.1,ENSMUSG00000103217.1	Gm38287	ENSMUSG00000103217.1	ENSMUST00000195193.1	antisense	chr2:25180781-25183339
chr2	25268901	25268959	+	GA-rich	Low_complexity	Low_complexity	chr2	25268935	25268937	+	ENSMUST00000155738.1,ENSMUSG00000048707.9	Tprn	ENSMUSG00000048707.9	ENSMUST00000155738.1	protein_coding	chr2:25268936-25269515
chr2	25289911	25290179	-	MER45R	DNA	hAT-Tip100	chr2	25289914	25289916	+	ENSMUST00000028337.6,ENSMUSG00000026961.6	Lrrc26	ENSMUSG00000026961.6	ENSMUST00000028337.6	protein_coding	chr2:25289915-25291180
chr2	25339650	25339742	+	U6	snRNA	snRNA	chr2	25339650	25339652	+	ENSMUST00000157546.1,ENSMUSG00000088171.1	Gm25220	ENSMUSG00000088171.1	ENSMUST00000157546.1	snRNA	chr2:25339651-25339745
chr2	25404017	25404145	-	B1_Mus1	SINE	Alu	chr2	25404084	25404086	+	ENSMUST00000136138.7,ENSMUSG00000015094.16	Npdc1	ENSMUSG00000015094.16	ENSMUST00000136138.7	protein_coding	chr2:25404085-25409491
chr2	25428672	25428768	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr2	25428702	25428704	+	ENSMUST00000102919.3,ENSMUSG00000026944.18	Abca2	ENSMUSG00000026944.18	ENSMUST00000102919.3	protein_coding	chr2:25428703-25448540
chr2	25539137	25539337	-	URR1B	DNA	hAT-Charlie	chr2	25539139	25539141	-	ENSMUST00000151742.1,ENSMUSG00000026942.13	Traf2	ENSMUSG00000026942.13	ENSMUST00000151742.1	protein_coding	chr2:25518866-25539140
chr2	25589112	25589260	+	B1_Mus1	SINE	Alu	chr2	25589158	25589160	-	ENSMUST00000140778.1,ENSMUSG00000015087.14	Rabl6	ENSMUSG00000015087.14	ENSMUST00000140778.1	protein_coding	chr2:25587445-25589159
chr2	25630600	25630826	-	B4	SINE	B4	chr2	25630672	25630674	+	ENSMUST00000135799.2,ENSMUSG00000052403.11	Fcnaos	ENSMUSG00000052403.11	ENSMUST00000135799.2	antisense	chr2:25630673-25631761
chr2	25679170	25679384	-	B3	SINE	B2	chr2	25679265	25679267	+	ENSMUST00000059693.8,ENSMUSG00000045684.10	Lcn6	ENSMUSG00000045684.10	ENSMUST00000059693.8	protein_coding	chr2:25679266-25681605
chr2	25877829	25877865	+	GC_rich	Low_complexity	Low_complexity	chr2	25877856	25877858	+	ENSMUST00000114170.7,ENSMUSG00000058740.14	Kcnt1	ENSMUSG00000058740.14	ENSMUST00000114170.7	protein_coding	chr2:25877857-25895175
chr2	25877829	25877865	+	GC_rich	Low_complexity	Low_complexity	chr2	25877862	25877864	+	ENSMUST00000114176.8,ENSMUSG00000058740.14	Kcnt1	ENSMUSG00000058740.14	ENSMUST00000114176.8	protein_coding	chr2:25877863-25916611
chr2	25983094	25983235	+	G-rich	Low_complexity	Low_complexity	chr2	25983207	25983209	-	ENSMUST00000139937.1,ENSMUSG00000026933.17	Camsap1	ENSMUSG00000026933.17	ENSMUST00000139937.1	protein_coding	chr2:25956250-25983208
chr2	26122802	26122853	+	GC_rich	Low_complexity	Low_complexity	chr2	26122817	26122819	-	ENSMUST00000028300.5,ENSMUSG00000026932.14	Nacc2	ENSMUSG00000026932.14	ENSMUST00000028300.5	protein_coding	chr2:26055535-26122818
chr2	26315549	26315609	+	G-rich	Low_complexity	Low_complexity	chr2	26315591	26315593	+	ENSMUST00000078616.11,ENSMUSG00000026930.15	Gpsm1	ENSMUSG00000026930.15	ENSMUST00000078616.11	protein_coding	chr2:26315592-26348237
chr2	26371053	26371199	-	B1_Mus1	SINE	Alu	chr2	26371141	26371143	-	ENSMUST00000125789.1,ENSMUSG00000036281.13	Snapc4	ENSMUSG00000036281.13	ENSMUST00000125789.1	protein_coding	chr2:26369507-26371142
chr2	26456642	26457147	+	RLTR20B5_MM	LTR	ERVK	chr2	26457143	26457145	+	ENSMUST00000156099.1,ENSMUSG00000085543.1	Gm13568	ENSMUSG00000085543.1	ENSMUST00000156099.1	processed_transcript	chr2:26457144-26458316
chr2	26466252	26466455	-	B3	SINE	B2	chr2	26466366	26466368	-	ENSMUST00000138034.7,ENSMUSG00000026923.15	Notch1	ENSMUSG00000026923.15	ENSMUST00000138034.7	protein_coding	chr2:26465471-26466367
chr2	26586633	26586682	+	GC_rich	Low_complexity	Low_complexity	chr2	26586660	26586662	+	ENSMUST00000149460.7,ENSMUSG00000026921.18	Egfl7	ENSMUSG00000026921.18	ENSMUST00000149460.7	protein_coding	chr2:26586661-26590908
chr2	26586633	26586682	+	GC_rich	Low_complexity	Low_complexity	chr2	26586671	26586673	+	ENSMUST00000145575.8,ENSMUSG00000026921.18	Egfl7	ENSMUSG00000026921.18	ENSMUST00000145575.8	protein_coding	chr2:26586672-26590939
chr2	26586633	26586682	+	GC_rich	Low_complexity	Low_complexity	chr2	26586638	26586640	+	ENSMUST00000174066.1,ENSMUSG00000092356.1	Gm20532	ENSMUSG00000092356.1	ENSMUST00000174066.1	protein_coding	chr2:26586639-26635634
chr2	26604210	26604267	+	GC_rich	Low_complexity	Low_complexity	chr2	26604210	26604212	-	ENSMUST00000131940.7,ENSMUSG00000026922.13	Agpat2	ENSMUSG00000026922.13	ENSMUST00000131940.7	protein_coding	chr2:26593057-26604211
chr2	26604326	26604478	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	26604331	26604333	-	ENSMUST00000028286.11,ENSMUSG00000026922.13	Agpat2	ENSMUSG00000026922.13	ENSMUST00000028286.11	protein_coding	chr2:26593057-26604332
chr2	26604326	26604478	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	26604416	26604418	-	ENSMUST00000140386.7,ENSMUSG00000026922.13	Agpat2	ENSMUSG00000026922.13	ENSMUST00000140386.7	protein_coding	chr2:26594503-26604417
chr2	26956535	26956645	+	PB1D9	SINE	Alu	chr2	26956585	26956587	-	ENSMUST00000123126.1,ENSMUSG00000052406.14	Rexo4	ENSMUSG00000052406.14	ENSMUST00000123126.1	protein_coding	chr2:26954326-26956586
chr2	27009997	27010037	+	GC_rich	Low_complexity	Low_complexity	chr2	27010012	27010014	+	ENSMUST00000133126.1,ENSMUSG00000015488.14	Cacfd1	ENSMUSG00000015488.14	ENSMUST00000133126.1	protein_coding	chr2:27010013-27018421
chr2	27142449	27142492	+	GC_rich	Low_complexity	Low_complexity	chr2	27142490	27142492	-	ENSMUST00000151224.2,ENSMUSG00000009216.7	Fam163b	ENSMUSG00000009216.7	ENSMUST00000151224.2	protein_coding	chr2:27110380-27142491
chr2	27225132	27225419	+	ORR1E	LTR	ERVL-MaLR	chr2	27225191	27225193	-	ENSMUST00000144448.1,ENSMUSG00000009614.16	Sardh	ENSMUSG00000009614.16	ENSMUST00000144448.1	protein_coding	chr2:27211092-27225192
chr2	27400950	27402008	+	ORR1A2-int	LTR	ERVL-MaLR	chr2	27401851	27401853	+	ENSMUST00000102409.1,ENSMUSG00000076364.1	Gm24049	ENSMUSG00000076364.1	ENSMUST00000102409.1	miRNA	chr2:27401852-27401951
chr2	27442189	27442405	+	C-rich	Low_complexity	Low_complexity	chr2	27442323	27442325	+	ENSMUST00000209765.1,ENSMUSG00000109946.1	Brd3os	ENSMUSG00000109946.1	ENSMUST00000209765.1	protein_coding	chr2:27442324-27444221
chr2	27527729	27527897	-	B2_Mm2	SINE	B2	chr2	27527771	27527773	+	ENSMUST00000125088.1,ENSMUSG00000026917.15	Wdr5	ENSMUSG00000026917.15	ENSMUST00000125088.1	protein_coding	chr2:27527772-27533355
chr2	27677120	27677245	+	GC_rich	Low_complexity	Low_complexity	chr2	27677200	27677202	+	ENSMUST00000077257.11,ENSMUSG00000015846.14	Rxra	ENSMUSG00000015846.14	ENSMUST00000077257.11	protein_coding	chr2:27677201-27762957
chr2	28093302	28094203	-	RMER19B	LTR	ERVK	chr2	28093513	28093515	-	ENSMUST00000137756.1,ENSMUSG00000085693.1	Gm13371	ENSMUSG00000085693.1	ENSMUST00000137756.1	lincRNA	chr2:28092032-28093514
chr2	28095448	28095608	+	MTD	LTR	ERVL-MaLR	chr2	28095476	28095478	+	ENSMUST00000126140.7,ENSMUSG00000086425.7	F730016J06Rik	ENSMUSG00000086425.7	ENSMUST00000126140.7	lincRNA	chr2:28095477-28127731
chr2	28095448	28095608	+	MTD	LTR	ERVL-MaLR	chr2	28095482	28095484	+	ENSMUST00000156508.1,ENSMUSG00000086425.7	F730016J06Rik	ENSMUSG00000086425.7	ENSMUST00000156508.1	lincRNA	chr2:28095483-28113851
chr2	28446784	28446823	+	GC_rich	Low_complexity	Low_complexity	chr2	28446799	28446801	+	ENSMUST00000128199.7,ENSMUSG00000035829.13	Ppp1r26	ENSMUSG00000035829.13	ENSMUST00000128199.7	protein_coding	chr2:28446800-28450506
chr2	28562169	28562294	+	(TG)n	Simple_repeat	Simple_repeat	chr2	28562196	28562198	+	ENSMUST00000177012.7,ENSMUSG00000087667.8	Gm13381	ENSMUSG00000087667.8	ENSMUST00000177012.7	antisense	chr2:28562197-28576416
chr2	28595126	28595225	+	U6	snRNA	snRNA	chr2	28595126	28595128	+	ENSMUST00000158430.1,ENSMUSG00000089055.1	Gm22675	ENSMUSG00000089055.1	ENSMUST00000158430.1	snRNA	chr2:28595127-28595230
chr2	28608185	28608231	+	(TG)n	Simple_repeat	Simple_repeat	chr2	28608194	28608196	+	ENSMUST00000104867.1,ENSMUSG00000078061.1	Gm22824	ENSMUSG00000078061.1	ENSMUST00000104867.1	miRNA	chr2:28608195-28608286
chr2	28672269	28672308	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr2	28672277	28672279	+	ENSMUST00000139642.1,ENSMUSG00000026812.16	Tsc1	ENSMUSG00000026812.16	ENSMUST00000139642.1	protein_coding	chr2:28672278-28673329
chr2	28916418	28916470	+	(TC)n	Simple_repeat	Simple_repeat	chr2	28916439	28916441	-	ENSMUST00000113849.7,ENSMUSG00000026805.14	Barhl1	ENSMUSG00000026805.14	ENSMUST00000113849.7	protein_coding	chr2:28908969-28916440
chr2	29083405	29083484	+	ID_B1	SINE	B4	chr2	29083408	29083410	+	ENSMUST00000130506.1,ENSMUSG00000026803.17	Ttf1	ENSMUSG00000026803.17	ENSMUST00000130506.1	protein_coding	chr2:29083409-29084692
chr2	29088369	29088683	+	RLTR27	LTR	ERVK	chr2	29088665	29088667	+	ENSMUST00000141935.1,ENSMUSG00000086519.1	Gm13393	ENSMUSG00000086519.1	ENSMUST00000141935.1	lincRNA	chr2:29088666-29094501
chr2	29459193	29459291	+	5S	rRNA	rRNA	chr2	29459193	29459195	+	ENSMUST00000158972.1,ENSMUSG00000089597.1	Gm24976	ENSMUSG00000089597.1	ENSMUST00000158972.1	rRNA	chr2:29459194-29459328
chr2	29619695	29619877	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr2	29619719	29619721	+	ENSMUST00000095087.10,ENSMUSG00000039844.19	Rapgef1	ENSMUSG00000039844.19	ENSMUST00000095087.10	protein_coding	chr2:29619720-29740353
chr2	29619695	29619877	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr2	29619740	29619742	+	ENSMUST00000091146.11,ENSMUSG00000039844.19	Rapgef1	ENSMUSG00000039844.19	ENSMUST00000091146.11	protein_coding	chr2:29619741-29740363
chr2	29619695	29619877	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr2	29619769	29619771	+	ENSMUST00000102872.10,ENSMUSG00000039844.19	Rapgef1	ENSMUSG00000039844.19	ENSMUST00000102872.10	protein_coding	chr2:29619770-29740978
chr2	29759240	29759564	+	MTB_Mm	LTR	ERVL-MaLR	chr2	29759311	29759313	+	ENSMUST00000177379.1,ENSMUSG00000075425.10	Gm13547	ENSMUSG00000075425.10	ENSMUST00000177379.1	protein_coding	chr2:29759312-29763439
chr2	29942292	29942381	-	B1_Mus2	SINE	Alu	chr2	29942361	29942363	+	ENSMUST00000123608.1,ENSMUSG00000019715.14	Gle1	ENSMUSG00000019715.14	ENSMUST00000123608.1	protein_coding	chr2:29942362-29943787
chr2	30035016	30035152	-	B1_Mus1	SINE	Alu	chr2	30035045	30035047	-	ENSMUST00000143892.1,ENSMUSG00000039715.8	Wdr34	ENSMUSG00000039715.8	ENSMUST00000143892.1	protein_coding	chr2:30033794-30035046
chr2	30108453	30108571	-	ID_B1	SINE	B4	chr2	30108541	30108543	-	ENSMUST00000149818.1,ENSMUSG00000039686.14	Zer1	ENSMUSG00000039686.14	ENSMUST00000149818.1	protein_coding	chr2:30107515-30108542
chr2	30279511	30279689	-	B2_Mm2	SINE	B2	chr2	30279630	30279632	+	ENSMUST00000129512.1,ENSMUSG00000079484.12	Phyhd1	ENSMUSG00000079484.12	ENSMUST00000129512.1	protein_coding	chr2:30279631-30281854
chr2	30279511	30279689	-	B2_Mm2	SINE	B2	chr2	30279677	30279679	+	ENSMUST00000154988.1,ENSMUSG00000079484.12	Phyhd1	ENSMUSG00000079484.12	ENSMUST00000154988.1	protein_coding	chr2:30279678-30280510
chr2	30359317	30359382	+	GC_rich	Low_complexity	Low_complexity	chr2	30359331	30359333	-	ENSMUST00000113621.9,ENSMUSG00000026860.16	Sh3glb2	ENSMUSG00000026860.16	ENSMUST00000113621.9	protein_coding	chr2:30344811-30359332
chr2	30359317	30359382	+	GC_rich	Low_complexity	Low_complexity	chr2	30359336	30359338	-	ENSMUST00000128387.7,ENSMUSG00000026860.16	Sh3glb2	ENSMUSG00000026860.16	ENSMUST00000128387.7	protein_coding	chr2:30345820-30359337
chr2	30443208	30443245	+	(TG)n	Simple_repeat	Simple_repeat	chr2	30443218	30443220	+	ENSMUST00000137741.1,ENSMUSG00000039515.11	Ptpa	ENSMUSG00000039515.11	ENSMUST00000137741.1	protein_coding	chr2:30443219-30446899
chr2	30629576	30629759	-	MLT1B	LTR	ERVL-MaLR	chr2	30629654	30629656	+	ENSMUST00000146702.1,ENSMUSG00000086405.1	9330198N18Rik	ENSMUSG00000086405.1	ENSMUST00000146702.1	lincRNA	chr2:30629655-30689210
chr2	30830289	30830441	-	MIRb	SINE	MIR	chr2	30830332	30830334	-	ENSMUST00000041726.3,ENSMUSG00000039483.10	Asb6	ENSMUSG00000039483.10	ENSMUST00000041726.3	protein_coding	chr2:30823097-30830333
chr2	31185227	31185374	+	B2_Mm2	SINE	B2	chr2	31185276	31185278	+	ENSMUST00000127872.8,ENSMUSG00000000194.13	Gpr107	ENSMUSG00000000194.13	ENSMUST00000127872.8	protein_coding	chr2:31185277-31209158
chr2	31210094	31210193	+	ID_B1	SINE	B4	chr2	31210099	31210101	+	ENSMUST00000169333.1,ENSMUSG00000000194.13	Gpr107	ENSMUSG00000000194.13	ENSMUST00000169333.1	protein_coding	chr2:31210100-31214566
chr2	31246127	31246175	+	GC_rich	Low_complexity	Low_complexity	chr2	31246165	31246167	+	ENSMUST00000150670.1,ENSMUSG00000062661.6	Ncs1	ENSMUSG00000062661.6	ENSMUST00000150670.1	protein_coding	chr2:31246166-31292319
chr2	31446608	31446970	+	ORR1C2	LTR	ERVL-MaLR	chr2	31446734	31446736	+	ENSMUST00000142448.7,ENSMUSG00000055632.18	Hmcn2	ENSMUSG00000055632.18	ENSMUST00000142448.7	protein_coding	chr2:31446735-31460737
chr2	31572615	31572734	+	RMER17C2	LTR	ERVK	chr2	31572650	31572652	+	ENSMUST00000113482.7,ENSMUSG00000026843.15	Fubp3	ENSMUSG00000026843.15	ENSMUST00000113482.7	protein_coding	chr2:31572651-31617526
chr2	31673098	31673281	+	MTD	LTR	ERVL-MaLR	chr2	31673255	31673257	+	ENSMUST00000146135.1,ENSMUSG00000039356.15	Exosc2	ENSMUSG00000039356.15	ENSMUST00000146135.1	protein_coding	chr2:31673256-31678533
chr2	31845973	31846024	+	GC_rich	Low_complexity	Low_complexity	chr2	31846004	31846006	-	ENSMUST00000028188.7,ENSMUSG00000026841.7	Fibcd1	ENSMUSG00000026841.7	ENSMUST00000028188.7	protein_coding	chr2:31813290-31846005
chr2	31961292	31961377	-	PB1D10	SINE	Alu	chr2	31961328	31961330	+	ENSMUST00000125457.7,ENSMUSG00000001864.13	Aif1l	ENSMUSG00000001864.13	ENSMUST00000125457.7	protein_coding	chr2:31961329-31969746
chr2	31963200	31963349	-	MIRb	SINE	MIR	chr2	31963268	31963270	+	ENSMUST00000156564.1,ENSMUSG00000001864.13	Aif1l	ENSMUSG00000001864.13	ENSMUST00000156564.1	protein_coding	chr2:31963269-31970995
chr2	31969250	31969338	-	B1F1	SINE	Alu	chr2	31969319	31969321	+	ENSMUST00000145137.1,ENSMUSG00000001864.13	Aif1l	ENSMUSG00000001864.13	ENSMUST00000145137.1	protein_coding	chr2:31969320-31971155
chr2	32064164	32064257	+	B1F	SINE	Alu	chr2	32064163	32064165	-	ENSMUST00000149300.7,ENSMUSG00000090157.7	Gm16534	ENSMUSG00000090157.7	ENSMUST00000149300.7	processed_transcript	chr2:32050086-32064164
chr2	32151138	32151175	+	(GGA)n	Simple_repeat	Simple_repeat	chr2	32151147	32151149	+	ENSMUST00000069817.14,ENSMUSG00000039262.16	Prrc2b	ENSMUSG00000039262.16	ENSMUST00000069817.14	protein_coding	chr2:32151148-32234522
chr2	32173081	32173262	-	B2_Mm2	SINE	B2	chr2	32173170	32173172	+	ENSMUST00000184513.1,ENSMUSG00000099155.1	Gm27805	ENSMUSG00000099155.1	ENSMUST00000184513.1	miRNA	chr2:32173171-32173249
chr2	32282760	32283353	+	RMER1B	Other	Other	chr2	32282863	32282865	-	ENSMUST00000113395.7,ENSMUSG00000044627.11	Swi5	ENSMUSG00000044627.11	ENSMUST00000113395.7	protein_coding	chr2:32278816-32282864
chr2	32301136	32301218	+	ID2	SINE	ID	chr2	32301211	32301213	+	ENSMUST00000146544.1,ENSMUSG00000002546.16	Golga2	ENSMUSG00000002546.16	ENSMUST00000146544.1	protein_coding	chr2:32301212-32302949
chr2	32365276	32365415	-	B1_Mur1	SINE	Alu	chr2	32365344	32365346	+	ENSMUST00000192055.1,ENSMUSG00000039205.16	Ciz1	ENSMUSG00000039205.16	ENSMUST00000192055.1	protein_coding	chr2:32365345-32367514
chr2	32375104	32375136	+	PB1D7	SINE	Alu	chr2	32375107	32375109	+	ENSMUST00000149184.1,ENSMUSG00000039205.16	Ciz1	ENSMUSG00000039205.16	ENSMUST00000149184.1	protein_coding	chr2:32375108-32376390
chr2	32487958	32487993	+	(TAAA)n	Simple_repeat	Simple_repeat	chr2	32487987	32487989	+	ENSMUST00000195599.1,ENSMUSG00000103175.1	Gm37169	ENSMUSG00000103175.1	ENSMUST00000195599.1	TEC	chr2:32487988-32492148
chr2	32593470	32593575	-	U6	snRNA	snRNA	chr2	32593572	32593574	-	ENSMUST00000175406.1,ENSMUSG00000093147.1	Gm23369	ENSMUSG00000093147.1	ENSMUST00000175406.1	snRNA	chr2:32593469-32593573
chr2	32607992	32608121	-	MIRb	SINE	MIR	chr2	32608070	32608072	+	ENSMUST00000072111.7,ENSMUSG00000026811.18	St6galnac6	ENSMUSG00000026811.18	ENSMUST00000072111.7	protein_coding	chr2:32608071-32620804
chr2	32607992	32608121	-	MIRb	SINE	MIR	chr2	32608084	32608086	+	ENSMUST00000149220.1,ENSMUSG00000026811.18	St6galnac6	ENSMUSG00000026811.18	ENSMUST00000149220.1	protein_coding	chr2:32608085-32616819
chr2	32652249	32652361	+	PB1D9	SINE	Alu	chr2	32652328	32652330	+	ENSMUST00000175595.1,ENSMUSG00000093336.1	Mir1954	ENSMUSG00000093336.1	ENSMUST00000175595.1	miRNA	chr2:32652329-32652414
chr2	32694163	32694189	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	32694184	32694186	-	ENSMUST00000028148.10,ENSMUSG00000009566.12	Fpgs	ENSMUSG00000009566.12	ENSMUST00000028148.10	protein_coding	chr2:32682609-32694185
chr2	32710337	32710445	+	B1_Mur3	SINE	Alu	chr2	32710348	32710350	-	ENSMUST00000144210.1,ENSMUSG00000009555.16	Cdk9	ENSMUSG00000009555.16	ENSMUST00000144210.1	protein_coding	chr2:32709532-32710349
chr2	32712887	32712929	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	32712887	32712889	-	ENSMUST00000175539.1,ENSMUSG00000093280.1	Mir2861	ENSMUSG00000093280.1	ENSMUST00000175539.1	miRNA	chr2:32712807-32712888
chr2	32760181	32760317	+	MIRc	SINE	MIR	chr2	32760294	32760296	+	ENSMUST00000149987.1,ENSMUSG00000009563.16	Tor2a	ENSMUSG00000009563.16	ENSMUST00000149987.1	protein_coding	chr2:32760295-32761789
chr2	33008317	33008470	-	MIR	SINE	MIR	chr2	33008327	33008329	-	ENSMUST00000153717.1,ENSMUSG00000038860.15	Garnl3	ENSMUSG00000038860.15	ENSMUST00000153717.1	protein_coding	chr2:33004632-33008328
chr2	33130598	33130709	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr2	33130607	33130609	-	ENSMUST00000124000.1,ENSMUSG00000038860.15	Garnl3	ENSMUSG00000038860.15	ENSMUST00000124000.1	protein_coding	chr2:33054216-33130608
chr2	33158075	33158181	+	MIRc	SINE	MIR	chr2	33158169	33158171	-	ENSMUST00000138704.1,ENSMUSG00000038831.16	Ralgps1	ENSMUSG00000038831.16	ENSMUST00000138704.1	protein_coding	chr2:33143307-33158170
chr2	33431311	33431351	+	C-rich	Low_complexity	Low_complexity	chr2	33431323	33431325	-	ENSMUST00000113158.7,ENSMUSG00000068966.10	Zbtb34	ENSMUSG00000068966.10	ENSMUST00000113158.7	protein_coding	chr2:33406108-33431324
chr2	33431311	33431351	+	C-rich	Low_complexity	Low_complexity	chr2	33431316	33431318	-	ENSMUST00000134589.1,ENSMUSG00000068966.10	Zbtb34	ENSMUSG00000068966.10	ENSMUST00000134589.1	protein_coding	chr2:33411919-33431317
chr2	33462213	33462369	+	RMER15	LTR	ERVL	chr2	33462352	33462354	-	ENSMUST00000095035.2,ENSMUSG00000026788.13	Zbtb43	ENSMUSG00000026788.13	ENSMUST00000095035.2	protein_coding	chr2:33450287-33462353
chr2	33465069	33465139	-	RSINE1	SINE	B4	chr2	33465081	33465083	-	ENSMUST00000155198.1,ENSMUSG00000026788.13	Zbtb43	ENSMUSG00000026788.13	ENSMUST00000155198.1	protein_coding	chr2:33454619-33465082
chr2	33614303	33614440	+	MIR	SINE	MIR	chr2	33614397	33614399	+	ENSMUST00000193312.1,ENSMUSG00000104403.1	Gm38011	ENSMUSG00000104403.1	ENSMUST00000193312.1	TEC	chr2:33614398-33614676
chr2	33887477	33887543	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	33887481	33887483	-	ENSMUST00000146892.1,ENSMUSG00000038740.9	Mvb12b	ENSMUSG00000038740.9	ENSMUST00000146892.1	protein_coding	chr2:33873614-33887482
chr2	33942098	33942169	+	GA-rich	Low_complexity	Low_complexity	chr2	33942112	33942114	-	ENSMUST00000127936.1,ENSMUSG00000085987.2	Gm13403	ENSMUSG00000085987.2	ENSMUST00000127936.1	lincRNA	chr2:33935788-33942113
chr2	33942098	33942169	+	GA-rich	Low_complexity	Low_complexity	chr2	33942144	33942146	-	ENSMUST00000134271.1,ENSMUSG00000085987.2	Gm13403	ENSMUSG00000085987.2	ENSMUST00000134271.1	lincRNA	chr2:33937895-33942145
chr2	34372002	34372038	+	(AGGGGG)n	Simple_repeat	Simple_repeat	chr2	34372037	34372039	-	ENSMUST00000113132.8,ENSMUSG00000038718.15	Pbx3	ENSMUSG00000038718.15	ENSMUST00000113132.8	protein_coding	chr2:34171457-34372038
chr2	34372038	34372095	+	GC_rich	Low_complexity	Low_complexity	chr2	34372037	34372039	-	ENSMUST00000113132.8,ENSMUSG00000038718.15	Pbx3	ENSMUSG00000038718.15	ENSMUST00000113132.8	protein_coding	chr2:34171457-34372038
chr2	34372038	34372095	+	GC_rich	Low_complexity	Low_complexity	chr2	34372043	34372045	-	ENSMUST00000040638.14,ENSMUSG00000038718.15	Pbx3	ENSMUSG00000038718.15	ENSMUST00000040638.14	protein_coding	chr2:34171723-34372044
chr2	34754947	34755253	-	L3	LINE	CR1	chr2	34755231	34755233	-	ENSMUST00000102800.7,ENSMUSG00000026867.18	Gapvd1	ENSMUSG00000026867.18	ENSMUST00000102800.7	protein_coding	chr2:34674594-34755232
chr2	34832700	34833072	-	IAP-d-int	LTR	ERVK	chr2	34833006	34833008	+	ENSMUST00000201786.3,ENSMUSG00000107167.3	Gm34653	ENSMUSG00000107167.3	ENSMUST00000201786.3	protein_coding	chr2:34833007-34839728
chr2	34916249	34916353	+	U6	snRNA	snRNA	chr2	34916249	34916251	+	ENSMUST00000158129.1,ENSMUSG00000088754.1	Gm24905	ENSMUSG00000088754.1	ENSMUST00000158129.1	snRNA	chr2:34916250-34916353
chr2	34961575	34961642	+	(GGCTG)n	Simple_repeat	Simple_repeat	chr2	34961584	34961586	-	ENSMUST00000028234.11,ENSMUSG00000026875.14	Traf1	ENSMUSG00000026875.14	ENSMUST00000028234.11	protein_coding	chr2:34943256-34961585
chr2	34961575	34961642	+	(GGCTG)n	Simple_repeat	Simple_repeat	chr2	34961581	34961583	-	ENSMUST00000129131.7,ENSMUSG00000026875.14	Traf1	ENSMUSG00000026875.14	ENSMUST00000129131.7	protein_coding	chr2:34947536-34961582
chr2	34961575	34961642	+	(GGCTG)n	Simple_repeat	Simple_repeat	chr2	34961596	34961598	-	ENSMUST00000156479.2,ENSMUSG00000026875.14	Traf1	ENSMUSG00000026875.14	ENSMUST00000156479.2	protein_coding	chr2:34957547-34961597
chr2	35101349	35101793	-	RMER4A	LTR	ERVK	chr2	35101542	35101544	-	ENSMUST00000154817.1,ENSMUSG00000035875.15	AI182371	ENSMUSG00000035875.15	ENSMUST00000154817.1	protein_coding	chr2:35089169-35101543
chr2	35161026	35161785	+	L1_Mus1	LINE	L1	chr2	35161730	35161732	+	ENSMUST00000130457.3,ENSMUSG00000057110.15	Cntrl	ENSMUSG00000057110.15	ENSMUST00000130457.3	protein_coding	chr2:35161731-35166223
chr2	35280381	35280419	+	(CAAT)n	Simple_repeat	Simple_repeat	chr2	35280389	35280391	+	ENSMUST00000202212.1,ENSMUSG00000106961.1	Gm43128	ENSMUSG00000106961.1	ENSMUST00000202212.1	TEC	chr2:35280390-35282010
chr2	35397035	35397121	-	MLT1A1	LTR	ERVL-MaLR	chr2	35397056	35397058	-	ENSMUST00000113009.1,ENSMUSG00000079421.8	4930402F06Rik	ENSMUSG00000079421.8	ENSMUST00000113009.1	protein_coding	chr2:35375582-35397057
chr2	35423158	35423548	+	MT2B	LTR	ERVL	chr2	35423326	35423328	-	ENSMUST00000044255.12,ENSMUSG00000035778.17	Ggta1	ENSMUSG00000035778.17	ENSMUST00000044255.12	protein_coding	chr2:35402109-35423327
chr2	35423158	35423548	+	MT2B	LTR	ERVL	chr2	35423326	35423328	-	ENSMUST00000164889.7,ENSMUSG00000035778.17	Ggta1	ENSMUSG00000035778.17	ENSMUST00000164889.7	protein_coding	chr2:35402109-35423327
chr2	35661278	35661403	+	G-rich	Low_complexity	Low_complexity	chr2	35661349	35661351	+	ENSMUST00000156465.7,ENSMUSG00000026883.17	Dab2ip	ENSMUSG00000026883.17	ENSMUST00000156465.7	protein_coding	chr2:35661350-35708847
chr2	35765728	35765932	-	ID_B1	SINE	B4	chr2	35765878	35765880	-	ENSMUST00000202120.1,ENSMUSG00000107106.1	Gm43760	ENSMUSG00000107106.1	ENSMUST00000202120.1	TEC	chr2:35762865-35765879
chr2	35950426	35950794	-	ORR1F	LTR	ERVL-MaLR	chr2	35950590	35950592	-	ENSMUST00000140201.7,ENSMUSG00000026885.13	Ttll11	ENSMUSG00000026885.13	ENSMUST00000140201.7	protein_coding	chr2:35902646-35950591
chr2	36210731	36210800	+	G-rich	Low_complexity	Low_complexity	chr2	36210771	36210773	+	ENSMUST00000128242.1,ENSMUSG00000085141.1	Gm13429	ENSMUSG00000085141.1	ENSMUST00000128242.1	processed_transcript	chr2:36210772-36212902
chr2	36250656	36250798	-	MIRc	SINE	MIR	chr2	36250729	36250731	-	ENSMUST00000202733.1,ENSMUSG00000106933.1	Gm43621	ENSMUSG00000106933.1	ENSMUST00000202733.1	TEC	chr2:36248709-36250730
chr2	37035529	37036056	+	Lx5	LINE	L1	chr2	37036023	37036025	+	ENSMUST00000117541.1,ENSMUSG00000081174.1	Gm13439	ENSMUSG00000081174.1	ENSMUST00000117541.1	processed_pseudogene	chr2:37036024-37036432
chr2	37089045	37089440	-	MTA_Mm	LTR	ERVL-MaLR	chr2	37089224	37089226	-	ENSMUST00000216663.1,ENSMUSG00000075378.2	Olfr361	ENSMUSG00000075378.2	ENSMUST00000216663.1	protein_coding	chr2:37083736-37089225
chr2	37089045	37089440	-	MTA_Mm	LTR	ERVL-MaLR	chr2	37089289	37089291	-	ENSMUST00000214969.1,ENSMUSG00000075378.2	Olfr361	ENSMUSG00000075378.2	ENSMUST00000214969.1	protein_coding	chr2:37083736-37089290
chr2	37282050	37282157	+	U6	snRNA	snRNA	chr2	37282050	37282052	+	ENSMUST00000082692.1,ENSMUSG00000064626.1	Gm22306	ENSMUSG00000064626.1	ENSMUST00000082692.1	snRNA	chr2:37282051-37282157
chr2	37451564	37451708	-	B1_Mus1	SINE	Alu	chr2	37451635	37451637	+	ENSMUST00000203470.1,ENSMUSG00000035437.15	Rabgap1	ENSMUSG00000035437.15	ENSMUST00000203470.1	protein_coding	chr2:37451636-37453788
chr2	37490844	37491000	-	RSINE1	SINE	B4	chr2	37490864	37490866	+	ENSMUST00000205186.1,ENSMUSG00000035437.15	Rabgap1	ENSMUSG00000035437.15	ENSMUST00000205186.1	protein_coding	chr2:37490865-37493946
chr2	37516496	37516526	+	(CCCTG)n	Simple_repeat	Simple_repeat	chr2	37516518	37516520	+	ENSMUST00000159092.1,ENSMUSG00000035437.15	Rabgap1	ENSMUSG00000035437.15	ENSMUST00000159092.1	protein_coding	chr2:37516519-37565053
chr2	37594027	37594636	+	RMER1A	Other	Other	chr2	37594065	37594067	-	ENSMUST00000203861.1,ENSMUSG00000026915.16	Strbp	ENSMUSG00000026915.16	ENSMUST00000203861.1	protein_coding	chr2:37570021-37594066
chr2	37688256	37688415	+	B3A	SINE	B2	chr2	37688283	37688285	-	ENSMUST00000175217.1,ENSMUSG00000092958.1	Mir5128	ENSMUSG00000092958.1	ENSMUST00000175217.1	miRNA	chr2:37688201-37688284
chr2	37703101	37703270	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	37703148	37703150	-	ENSMUST00000144206.1,ENSMUSG00000026915.16	Strbp	ENSMUSG00000026915.16	ENSMUST00000144206.1	protein_coding	chr2:37647120-37703149
chr2	37703281	37703366	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	37703347	37703349	-	ENSMUST00000135488.1,ENSMUSG00000026915.16	Strbp	ENSMUSG00000026915.16	ENSMUST00000135488.1	protein_coding	chr2:37634928-37703348
chr2	38019116	38019280	+	B2_Mm2	SINE	B2	chr2	38019166	38019168	-	ENSMUST00000204461.1,ENSMUSG00000107586.1	Gm44283	ENSMUSG00000107586.1	ENSMUST00000204461.1	TEC	chr2:38015218-38019167
chr2	38225069	38225175	-	L2a	LINE	L2	chr2	38225121	38225123	-	ENSMUST00000200061.1,ENSMUSG00000105046.1	Gm44455	ENSMUSG00000105046.1	ENSMUST00000200061.1	miRNA	chr2:38225041-38225122
chr2	38339246	38339351	+	GC_rich	Low_complexity	Low_complexity	chr2	38339280	38339282	+	ENSMUST00000143783.8,ENSMUSG00000000247.11	Lhx2	ENSMUSG00000000247.11	ENSMUST00000143783.8	protein_coding	chr2:38339281-38369199
chr2	38511592	38511693	+	GC_rich	Low_complexity	Low_complexity	chr2	38511642	38511644	+	ENSMUST00000054234.9,ENSMUSG00000026749.11	Nek6	ENSMUSG00000026749.11	ENSMUST00000054234.9	protein_coding	chr2:38511643-38594606
chr2	38511592	38511693	+	GC_rich	Low_complexity	Low_complexity	chr2	38511667	38511669	+	ENSMUST00000112902.7,ENSMUSG00000026749.11	Nek6	ENSMUSG00000026749.11	ENSMUST00000112902.7	protein_coding	chr2:38511668-38587480
chr2	38566161	38566555	-	MTA_Mm	LTR	ERVL-MaLR	chr2	38566353	38566355	-	ENSMUST00000203964.1,ENSMUSG00000107535.1	Gm44183	ENSMUSG00000107535.1	ENSMUST00000203964.1	TEC	chr2:38564727-38566354
chr2	38637017	38637161	+	B1_Mus1	SINE	Alu	chr2	38637142	38637144	-	ENSMUST00000175060.3,ENSMUSG00000095278.2	Gm27634	ENSMUSG00000095278.2	ENSMUST00000175060.3	miRNA	chr2:38637018-38637143
chr2	38763725	38763805	+	B4A	SINE	B4	chr2	38763764	38763766	-	ENSMUST00000203202.1,ENSMUSG00000063972.13	Nr6a1	ENSMUSG00000063972.13	ENSMUST00000203202.1	protein_coding	chr2:38742957-38763765
chr2	38823322	38823342	+	(T)n	Simple_repeat	Simple_repeat	chr2	38823340	38823342	+	ENSMUST00000151229.1,ENSMUSG00000085201.1	Nr6a1os	ENSMUSG00000085201.1	ENSMUST00000151229.1	antisense	chr2:38823341-38852370
chr2	38862086	38862227	-	L1M4a2	LINE	L1	chr2	38862162	38862164	+	ENSMUST00000204297.1,ENSMUSG00000107468.1	5730507A11Rik	ENSMUSG00000107468.1	ENSMUST00000204297.1	TEC	chr2:38862163-38865533
chr2	39005553	39005661	-	RSINE1	SINE	B4	chr2	39005623	39005625	-	ENSMUST00000080861.5,ENSMUSG00000062997.6	Rpl35	ENSMUSG00000062997.6	ENSMUST00000080861.5	protein_coding	chr2:39001580-39005624
chr2	39027776	39027880	+	U6	snRNA	snRNA	chr2	39027776	39027778	+	ENSMUST00000083193.1,ENSMUSG00000065127.1	Gm26127	ENSMUSG00000065127.1	ENSMUST00000083193.1	snRNA	chr2:39027777-39027883
chr2	39108457	39108933	+	RLTR28	LTR	ERVL	chr2	39108762	39108764	-	ENSMUST00000131225.3,ENSMUSG00000035236.17	Scai	ENSMUSG00000035236.17	ENSMUST00000131225.3	protein_coding	chr2:39106709-39108763
chr2	39162145	39162338	-	B3A	SINE	B2	chr2	39162234	39162236	-	ENSMUST00000203640.1,ENSMUSG00000082315.2	Gm16523	ENSMUSG00000082315.2	ENSMUST00000203640.1	transcribed_processed_pseudogene	chr2:39157486-39162235
chr2	39200866	39201016	+	RSINE1	SINE	B4	chr2	39200989	39200991	-	ENSMUST00000143733.1,ENSMUSG00000026753.5	Ppp6c	ENSMUSG00000026753.5	ENSMUST00000143733.1	protein_coding	chr2:39197497-39200990
chr2	39226255	39226308	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	39226281	39226283	-	ENSMUST00000204257.2,ENSMUSG00000026753.5	Ppp6c	ENSMUSG00000026753.5	ENSMUST00000204257.2	protein_coding	chr2:39196734-39226282
chr2	39237440	39238086	-	MYSERV6-int	LTR	ERVK	chr2	39237440	39237442	-	ENSMUST00000117490.2,ENSMUSG00000083686.2	Gm13504	ENSMUSG00000083686.2	ENSMUST00000117490.2	processed_pseudogene	chr2:39237126-39237441
chr2	39723744	39724097	+	MMERVK10D3_LTR	LTR	ERVK	chr2	39723994	39723996	+	ENSMUST00000204346.1,ENSMUSG00000107699.1	Gm43970	ENSMUSG00000107699.1	ENSMUST00000204346.1	TEC	chr2:39723995-39727599
chr2	40287011	40287164	-	MT2B1	LTR	ERVL	chr2	40287161	40287163	+	ENSMUST00000118767.1,ENSMUSG00000081577.1	Gm13455	ENSMUSG00000081577.1	ENSMUST00000118767.1	processed_pseudogene	chr2:40287162-40287678
chr2	40615014	40615394	-	MTA_Mm	LTR	ERVL-MaLR	chr2	40615250	40615252	-	ENSMUST00000129974.2,ENSMUSG00000049252.17	Lrp1b	ENSMUSG00000049252.17	ENSMUST00000129974.2	protein_coding	chr2:40595246-40615251
chr2	40958332	40958422	+	RLTR12C	LTR	ERVK	chr2	40958390	40958392	+	ENSMUST00000121472.1,ENSMUSG00000082930.1	Gm13462	ENSMUSG00000082930.1	ENSMUST00000121472.1	processed_pseudogene	chr2:40958391-40959351
chr2	44428934	44429017	+	U6	snRNA	snRNA	chr2	44428934	44428936	+	ENSMUST00000157499.1,ENSMUSG00000088124.1	Gm22867	ENSMUSG00000088124.1	ENSMUST00000157499.1	snRNA	chr2:44428935-44429043
chr2	44861404	44861798	-	MTA_Mm	LTR	ERVL-MaLR	chr2	44861621	44861623	-	ENSMUST00000112810.7,ENSMUSG00000036890.13	Gtdc1	ENSMUSG00000036890.13	ENSMUST00000112810.7	protein_coding	chr2:44564412-44861622
chr2	44861798	44862867	-	MTA_Mm-int	LTR	ERVL-MaLR	chr2	44862274	44862276	-	ENSMUST00000146694.7,ENSMUSG00000036890.13	Gtdc1	ENSMUSG00000036890.13	ENSMUST00000146694.7	protein_coding	chr2:44591910-44862275
chr2	44861798	44862867	-	MTA_Mm-int	LTR	ERVL-MaLR	chr2	44862274	44862276	-	ENSMUST00000154744.7,ENSMUSG00000036890.13	Gtdc1	ENSMUSG00000036890.13	ENSMUST00000154744.7	protein_coding	chr2:44756268-44862275
chr2	44927140	44927177	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	44927160	44927162	-	ENSMUST00000130991.7,ENSMUSG00000036890.13	Gtdc1	ENSMUSG00000036890.13	ENSMUST00000130991.7	protein_coding	chr2:44575478-44927161
chr2	44927140	44927177	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	44927148	44927150	-	ENSMUST00000133442.1,ENSMUSG00000036890.13	Gtdc1	ENSMUSG00000036890.13	ENSMUST00000133442.1	protein_coding	chr2:44791193-44927149
chr2	45110904	45110926	+	(TTTTTG)n	Simple_repeat	Simple_repeat	chr2	45110920	45110922	+	ENSMUST00000232324.1,ENSMUSG00000052248.16	Zeb2os	ENSMUSG00000052248.16	ENSMUST00000232324.1	antisense	chr2:45110921-45113345
chr2	45113279	45113341	+	C-rich	Low_complexity	Low_complexity	chr2	45113278	45113280	-	ENSMUST00000068415.10,ENSMUSG00000026872.17	Zeb2	ENSMUSG00000026872.17	ENSMUST00000068415.10	protein_coding	chr2:44987123-45113279
chr2	45113279	45113341	+	C-rich	Low_complexity	Low_complexity	chr2	45113283	45113285	-	ENSMUST00000127520.7,ENSMUSG00000026872.17	Zeb2	ENSMUSG00000026872.17	ENSMUST00000127520.7	protein_coding	chr2:45022989-45113284
chr2	45113279	45113341	+	C-rich	Low_complexity	Low_complexity	chr2	45113312	45113314	+	ENSMUST00000184656.1,ENSMUSG00000099117.1	Gm27404	ENSMUSG00000099117.1	ENSMUST00000184656.1	misc_RNA	chr2:45113313-45113415
chr2	45696407	45696958	+	RLTR17	LTR	ERVK	chr2	45696604	45696606	+	ENSMUST00000153567.1,ENSMUSG00000086202.1	1700019E08Rik	ENSMUSG00000086202.1	ENSMUST00000153567.1	lincRNA	chr2:45696605-45698447
chr2	45696407	45696958	+	RLTR17	LTR	ERVK	chr2	45696799	45696801	+	ENSMUST00000134308.1,ENSMUSG00000086202.1	1700019E08Rik	ENSMUSG00000086202.1	ENSMUST00000134308.1	lincRNA	chr2:45696800-45698067
chr2	45733196	45733580	+	RLTR10	LTR	ERVK	chr2	45733456	45733458	+	ENSMUST00000129687.1,ENSMUSG00000086710.1	Gm13465	ENSMUSG00000086710.1	ENSMUST00000129687.1	lincRNA	chr2:45733457-45753311
chr2	45751560	45751825	+	L2a	LINE	L2	chr2	45751683	45751685	-	ENSMUST00000145568.1,ENSMUSG00000086830.1	Gm13467	ENSMUSG00000086830.1	ENSMUST00000145568.1	lincRNA	chr2:45747803-45751684
chr2	47541914	47542310	+	MTA_Mm	LTR	ERVL-MaLR	chr2	47541983	47541985	+	ENSMUST00000175112.1,ENSMUSG00000092853.1	Gm25959	ENSMUSG00000092853.1	ENSMUST00000175112.1	miRNA	chr2:47541984-47542085
chr2	48934190	48934235	+	PB1D10	SINE	Alu	chr2	48934201	48934203	-	ENSMUST00000153150.1,ENSMUSG00000026761.12	Orc4	ENSMUSG00000026761.12	ENSMUST00000153150.1	protein_coding	chr2:48933153-48934202
chr2	48949962	48950016	+	(CTG)n	Simple_repeat	Simple_repeat	chr2	48949961	48949963	+	ENSMUST00000142250.1,ENSMUSG00000036792.12	Mbd5	ENSMUSG00000036792.12	ENSMUST00000142250.1	protein_coding	chr2:48949962-49021440
chr2	48949962	48950016	+	(CTG)n	Simple_repeat	Simple_repeat	chr2	48949962	48949964	+	ENSMUST00000148796.1,ENSMUSG00000036792.12	Mbd5	ENSMUSG00000036792.12	ENSMUST00000148796.1	protein_coding	chr2:48949963-48954067
chr2	48950270	48950347	+	G-rich	Low_complexity	Low_complexity	chr2	48950276	48950278	-	ENSMUST00000123271.1,ENSMUSG00000026761.12	Orc4	ENSMUSG00000026761.12	ENSMUST00000123271.1	protein_coding	chr2:48936844-48950277
chr2	49787666	49787688	+	GC_rich	Low_complexity	Low_complexity	chr2	49787687	49787689	+	ENSMUST00000028103.12,ENSMUSG00000026765.12	Lypd6b	ENSMUSG00000026765.12	ENSMUST00000028103.12	protein_coding	chr2:49787688-49948849
chr2	49906774	49906880	-	HY1	scRNA	scRNA	chr2	49906879	49906881	-	ENSMUST00000158200.1,ENSMUSG00000088825.1	Gm25223	ENSMUSG00000088825.1	ENSMUST00000158200.1	misc_RNA	chr2:49906771-49906880
chr2	50066401	50066429	+	GC_rich	Low_complexity	Low_complexity	chr2	50066428	50066430	+	ENSMUST00000112712.9,ENSMUSG00000050447.15	Lypd6	ENSMUSG00000050447.15	ENSMUST00000112712.9	protein_coding	chr2:50066429-50193569
chr2	50380175	50380558	-	ORR1D1	LTR	ERVL-MaLR	chr2	50380399	50380401	+	ENSMUST00000227437.1,ENSMUSG00000115545.1	Gm48908	ENSMUSG00000115545.1	ENSMUST00000227437.1	lincRNA	chr2:50380400-50412610
chr2	50547687	50547934	+	RMER4B	LTR	ERVK	chr2	50547913	50547915	+	ENSMUST00000146690.1,ENSMUSG00000085429.1	Gm13485	ENSMUSG00000085429.1	ENSMUST00000146690.1	lincRNA	chr2:50547914-50552258
chr2	51365363	51365715	-	RLTR12G	LTR	ERVK	chr2	51365498	51365500	-	ENSMUST00000142804.1,ENSMUSG00000086523.1	Gm13499	ENSMUSG00000086523.1	ENSMUST00000142804.1	lincRNA	chr2:51363572-51365499
chr2	51493110	51494449	+	L1_Mur3	LINE	L1	chr2	51493781	51493783	-	ENSMUST00000158989.1,ENSMUSG00000089614.1	Gm23505	ENSMUSG00000089614.1	ENSMUST00000158989.1	scaRNA	chr2:51493653-51493782
chr2	51933286	51933433	+	B1_Mur4	SINE	Alu	chr2	51933334	51933336	-	ENSMUST00000126090.7,ENSMUSG00000036249.16	Rbm43	ENSMUSG00000036249.16	ENSMUST00000126090.7	protein_coding	chr2:51925653-51933335
chr2	52072796	52072836	+	GC_rich	Low_complexity	Low_complexity	chr2	52072831	52072833	+	ENSMUST00000112693.9,ENSMUSG00000036202.16	Rif1	ENSMUSG00000036202.16	ENSMUST00000112693.9	protein_coding	chr2:52072832-52122383
chr2	52175989	52176179	-	B2_Mm1a	SINE	B2	chr2	52176036	52176038	-	ENSMUST00000131236.1,ENSMUSG00000026950.17	Neb	ENSMUSG00000026950.17	ENSMUST00000131236.1	protein_coding	chr2:52173559-52176037
chr2	52338726	52338980	+	RLTR10A	LTR	ERVK	chr2	52338797	52338799	-	ENSMUST00000036934.11,ENSMUSG00000026950.17	Neb	ENSMUSG00000026950.17	ENSMUST00000036934.11	protein_coding	chr2:52136647-52338798
chr2	52338726	52338980	+	RLTR10A	LTR	ERVK	chr2	52338797	52338799	-	ENSMUST00000136769.1,ENSMUSG00000026950.17	Neb	ENSMUSG00000026950.17	ENSMUST00000136769.1	protein_coding	chr2:52328834-52338798
chr2	52378406	52378809	+	MTC	LTR	ERVL-MaLR	chr2	52378473	52378475	-	ENSMUST00000209712.1,ENSMUSG00000026950.17	Neb	ENSMUSG00000026950.17	ENSMUST00000209712.1	protein_coding	chr2:52319634-52378474
chr2	52424510	52424901	+	L1M4b	LINE	L1	chr2	52424900	52424902	-	ENSMUST00000036541.7,ENSMUSG00000036093.7	Arl5a	ENSMUSG00000036093.7	ENSMUST00000036541.7	protein_coding	chr2:52397951-52424901
chr2	52676125	52676153	+	(GGA)n	Simple_repeat	Simple_repeat	chr2	52676142	52676144	-	ENSMUST00000148837.1,ENSMUSG00000017412.15	Cacnb4	ENSMUSG00000017412.15	ENSMUST00000148837.1	protein_coding	chr2:52675727-52676143
chr2	52676770	52676836	+	(TG)n	Simple_repeat	Simple_repeat	chr2	52676830	52676832	-	ENSMUST00000078324.6,ENSMUSG00000017412.15	Cacnb4	ENSMUSG00000017412.15	ENSMUST00000078324.6	protein_coding	chr2:52428325-52676831
chr2	52857859	52857889	+	GC_rich	Low_complexity	Low_complexity	chr2	52857859	52857861	+	ENSMUST00000155586.8,ENSMUSG00000036053.17	Fmnl2	ENSMUSG00000036053.17	ENSMUST00000155586.8	protein_coding	chr2:52857860-53132203
chr2	52857859	52857889	+	GC_rich	Low_complexity	Low_complexity	chr2	52857859	52857861	+	ENSMUST00000090952.10,ENSMUSG00000036053.17	Fmnl2	ENSMUSG00000036053.17	ENSMUST00000090952.10	protein_coding	chr2:52857860-53133804
chr2	52857859	52857889	+	GC_rich	Low_complexity	Low_complexity	chr2	52857859	52857861	+	ENSMUST00000127122.8,ENSMUSG00000036053.17	Fmnl2	ENSMUSG00000036053.17	ENSMUST00000127122.8	protein_coding	chr2:52857860-53133804
chr2	52857859	52857889	+	GC_rich	Low_complexity	Low_complexity	chr2	52857859	52857861	+	ENSMUST00000049483.13,ENSMUSG00000036053.17	Fmnl2	ENSMUSG00000036053.17	ENSMUST00000049483.13	protein_coding	chr2:52857860-53133804
chr2	52857859	52857889	+	GC_rich	Low_complexity	Low_complexity	chr2	52857867	52857869	+	ENSMUST00000050719.12,ENSMUSG00000036053.17	Fmnl2	ENSMUSG00000036053.17	ENSMUST00000050719.12	protein_coding	chr2:52857868-53131878
chr2	53274739	53274843	-	U6	snRNA	snRNA	chr2	53274840	53274842	-	ENSMUST00000158303.1,ENSMUSG00000088928.1	Gm25898	ENSMUSG00000088928.1	ENSMUST00000158303.1	snRNA	chr2:53274736-53274841
chr2	57123972	57124052	+	GC_rich	Low_complexity	Low_complexity	chr2	57124002	57124004	-	ENSMUST00000112629.7,ENSMUSG00000026826.13	Nr4a2	ENSMUSG00000026826.13	ENSMUST00000112629.7	protein_coding	chr2:57106830-57124003
chr2	57123972	57124052	+	GC_rich	Low_complexity	Low_complexity	chr2	57124002	57124004	-	ENSMUST00000183542.7,ENSMUSG00000026826.13	Nr4a2	ENSMUSG00000026826.13	ENSMUST00000183542.7	protein_coding	chr2:57106830-57124003
chr2	57629221	57629488	-	L1Md_T	LINE	L1	chr2	57629227	57629229	-	ENSMUST00000120373.1,ENSMUSG00000081642.1	Gm13532	ENSMUSG00000081642.1	ENSMUST00000120373.1	processed_pseudogene	chr2:57628989-57629228
chr2	57985977	57986182	+	MTD	LTR	ERVL-MaLR	chr2	57986016	57986018	-	ENSMUST00000209502.1,ENSMUSG00000110205.1	Gm33594	ENSMUSG00000110205.1	ENSMUST00000209502.1	lincRNA	chr2:57982192-57986017
chr2	58163621	58164154	-	RMER20C_Mm	LTR	ERVK	chr2	58164000	58164002	+	ENSMUST00000138444.1,ENSMUSG00000086862.1	Gm13546	ENSMUSG00000086862.1	ENSMUST00000138444.1	antisense	chr2:58164001-58177063
chr2	58276674	58277244	+	MLTR31A_MM	LTR	ERVK	chr2	58276778	58276780	+	ENSMUST00000131189.1,ENSMUSG00000086995.1	Gm13544	ENSMUSG00000086995.1	ENSMUST00000131189.1	antisense	chr2:58276779-58286902
chr2	58469965	58470173	+	B3	SINE	B2	chr2	58470115	58470117	+	ENSMUST00000167423.1,ENSMUSG00000091922.1	Gm17409	ENSMUSG00000091922.1	ENSMUST00000167423.1	protein_coding	chr2:58470116-58471077
chr2	58538325	58538498	+	MLT1D	LTR	ERVL-MaLR	chr2	58538437	58538439	-	ENSMUST00000126407.1,ENSMUSG00000026836.15	Acvr1	ENSMUSG00000026836.15	ENSMUST00000126407.1	protein_coding	chr2:58477758-58538438
chr2	58567343	58567396	+	GC_rich	Low_complexity	Low_complexity	chr2	58567386	58567388	+	ENSMUST00000071543.11,ENSMUSG00000026839.17	Upp2	ENSMUSG00000026839.17	ENSMUST00000071543.11	protein_coding	chr2:58567387-58792971
chr2	58859305	58860982	+	Lx	LINE	L1	chr2	58859433	58859435	+	ENSMUST00000112589.2,ENSMUSG00000079353.2	Gm11099	ENSMUSG00000079353.2	ENSMUST00000112589.2	protein_coding	chr2:58859434-58907618
chr2	58920734	58921301	+	L1MA6	LINE	L1	chr2	58921091	58921093	-	ENSMUST00000134708.1,ENSMUSG00000036641.9	Ccdc148	ENSMUSG00000036641.9	ENSMUST00000134708.1	protein_coding	chr2:58823430-58921092
chr2	59160825	59160856	+	(CGGG)n	Simple_repeat	Simple_repeat	chr2	59160849	59160851	+	ENSMUST00000168631.7,ENSMUSG00000026991.20	Pkp4	ENSMUSG00000026991.20	ENSMUST00000168631.7	protein_coding	chr2:59160850-59355204
chr2	59160825	59160856	+	(CGGG)n	Simple_repeat	Simple_repeat	chr2	59160849	59160851	+	ENSMUST00000102754.10,ENSMUSG00000026991.20	Pkp4	ENSMUSG00000026991.20	ENSMUST00000102754.10	protein_coding	chr2:59160850-59355205
chr2	59160983	59161015	+	(GGGGA)n	Simple_repeat	Simple_repeat	chr2	59161007	59161009	+	ENSMUST00000037903.14,ENSMUSG00000026991.20	Pkp4	ENSMUSG00000026991.20	ENSMUST00000037903.14	protein_coding	chr2:59161008-59355208
chr2	59387399	59387536	-	B1_Mus2	SINE	Alu	chr2	59387470	59387472	-	ENSMUST00000155111.1,ENSMUSG00000087455.7	5330411J11Rik	ENSMUSG00000087455.7	ENSMUST00000155111.1	processed_transcript	chr2:59383793-59387471
chr2	59841551	59841759	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr2	59841739	59841741	+	ENSMUST00000147650.1,ENSMUSG00000035168.16	Tanc1	ENSMUSG00000035168.16	ENSMUST00000147650.1	protein_coding	chr2:59841740-59845715
chr2	60124938	60125137	+	GC_rich	Low_complexity	Low_complexity	chr2	60125095	60125097	+	ENSMUST00000131198.1,ENSMUSG00000086603.1	Gm13620	ENSMUSG00000086603.1	ENSMUST00000131198.1	lincRNA	chr2:60125096-60125819
chr2	60209814	60209850	+	GC_rich	Low_complexity	Low_complexity	chr2	60209838	60209840	-	ENSMUST00000144893.1,ENSMUSG00000026987.16	Baz2b	ENSMUSG00000026987.16	ENSMUST00000144893.1	protein_coding	chr2:60076830-60209839
chr2	60284298	60284596	-	L1MC4a	LINE	L1	chr2	60284417	60284419	-	ENSMUST00000028356.8,ENSMUSG00000060703.12	Cd302	ENSMUSG00000060703.12	ENSMUST00000028356.8	protein_coding	chr2:60251993-60284418
chr2	60284298	60284596	-	L1MC4a	LINE	L1	chr2	60284487	60284489	-	ENSMUST00000074606.10,ENSMUSG00000060703.12	Cd302	ENSMUSG00000060703.12	ENSMUST00000074606.10	protein_coding	chr2:60251993-60284488
chr2	60881462	60881483	+	GC_rich	Low_complexity	Low_complexity	chr2	60881469	60881471	-	ENSMUST00000112509.1,ENSMUSG00000026970.16	Rbms1	ENSMUSG00000026970.16	ENSMUST00000112509.1	protein_coding	chr2:60752722-60881470
chr2	61762385	61762499	-	RLTR17B_Mm	LTR	ERVK	chr2	61762468	61762470	-	ENSMUST00000174919.1,ENSMUSG00000092660.1	Gm22403	ENSMUSG00000092660.1	ENSMUST00000174919.1	miRNA	chr2:61762386-61762469
chr2	61762398	61762518	+	RLTR17B_Mm	LTR	ERVK	chr2	61762468	61762470	-	ENSMUST00000174919.1,ENSMUSG00000092660.1	Gm22403	ENSMUSG00000092660.1	ENSMUST00000174919.1	miRNA	chr2:61762386-61762469
chr2	61798179	61798302	+	AmnSINE1	SINE	Deu	chr2	61798179	61798181	+	ENSMUST00000157169.1,ENSMUSG00000087794.1	Gm25966	ENSMUSG00000087794.1	ENSMUST00000157169.1	rRNA	chr2:61798180-61798296
chr2	62357679	62357894	+	MIRb	SINE	MIR	chr2	62357706	62357708	-	ENSMUST00000129738.1,ENSMUSG00000035000.8	Dpp4	ENSMUSG00000035000.8	ENSMUST00000129738.1	protein_coding	chr2:62352255-62357707
chr2	62456646	62456695	+	(CAT)n	Simple_repeat	Simple_repeat	chr2	62456647	62456649	-	ENSMUST00000131533.1,ENSMUSG00000087422.1	Gm13564	ENSMUSG00000087422.1	ENSMUST00000131533.1	lincRNA	chr2:62452936-62456648
chr2	62563388	62563764	-	MTB	LTR	ERVL-MaLR	chr2	62563716	62563718	-	ENSMUST00000172676.7,ENSMUSG00000000392.17	Fap	ENSMUSG00000000392.17	ENSMUST00000172676.7	protein_coding	chr2:62527349-62563717
chr2	63432087	63432194	-	U6	snRNA	snRNA	chr2	63432193	63432195	-	ENSMUST00000083903.1,ENSMUSG00000065837.1	Gm23503	ENSMUSG00000065837.1	ENSMUST00000083903.1	snRNA	chr2:63432088-63432194
chr2	63432194	63432329	+	URR1B	DNA	hAT-Charlie	chr2	63432193	63432195	-	ENSMUST00000083903.1,ENSMUSG00000065837.1	Gm23503	ENSMUSG00000065837.1	ENSMUST00000083903.1	snRNA	chr2:63432088-63432194
chr2	66410005	66410072	+	IMPB_01	Satellite	Satellite	chr2	66410063	66410065	-	ENSMUST00000112366.7,ENSMUSG00000064329.13	Scn1a	ENSMUSG00000064329.13	ENSMUST00000112366.7	protein_coding	chr2:66270781-66410064
chr2	66602515	66602752	+	7SK	RNA	RNA	chr2	66602514	66602516	+	ENSMUST00000158369.1,ENSMUSG00000088994.1	Gm23046	ENSMUSG00000088994.1	ENSMUST00000158369.1	misc_RNA	chr2:66602515-66602798
chr2	67408315	67414599	-	L1Md_T	LINE	L1	chr2	67413724	67413726	+	ENSMUST00000178898.1,ENSMUSG00000096240.1	Gm21830	ENSMUSG00000096240.1	ENSMUST00000178898.1	protein_coding	chr2:67413725-67433086
chr2	68565970	68566487	+	MTC-int	LTR	ERVL-MaLR	chr2	68566441	68566443	+	ENSMUST00000229369.1,ENSMUSG00000116244.1	Gm49461	ENSMUSG00000116244.1	ENSMUST00000229369.1	transcribed_unprocessed_pseudogene	chr2:68566442-68570671
chr2	68655212	68656831	-	L1Md_F	LINE	L1	chr2	68656485	68656487	+	ENSMUST00000125621.1,ENSMUSG00000079324.11	4932414N04Rik	ENSMUSG00000079324.11	ENSMUST00000125621.1	protein_coding	chr2:68656486-68688315
chr2	68657792	68658110	+	ORR1A2	LTR	ERVL-MaLR	chr2	68657883	68657885	+	ENSMUST00000128259.8,ENSMUSG00000079324.11	4932414N04Rik	ENSMUSG00000079324.11	ENSMUST00000128259.8	protein_coding	chr2:68657884-68748467
chr2	68657792	68658110	+	ORR1A2	LTR	ERVL-MaLR	chr2	68657912	68657914	+	ENSMUST00000112332.7,ENSMUSG00000079324.11	4932414N04Rik	ENSMUSG00000079324.11	ENSMUST00000112332.7	protein_coding	chr2:68657913-68668789
chr2	68891365	68891386	+	AT_rich	Low_complexity	Low_complexity	chr2	68891365	68891367	+	ENSMUST00000192720.1,ENSMUSG00000103233.1	Gm37159	ENSMUSG00000103233.1	ENSMUST00000192720.1	TEC	chr2:68891366-68894970
chr2	69178933	69179337	-	MTB_Mm	LTR	ERVL-MaLR	chr2	69179304	69179306	+	ENSMUST00000141276.1,ENSMUSG00000034738.8	Nostrin	ENSMUSG00000034738.8	ENSMUST00000141276.1	protein_coding	chr2:69179305-69185548
chr2	69728871	69729370	+	MT2_Mm	LTR	ERVL	chr2	69729191	69729193	+	ENSMUST00000144652.1,ENSMUSG00000042133.16	Ppig	ENSMUSG00000042133.16	ENSMUST00000144652.1	protein_coding	chr2:69729192-69735872
chr2	69741601	69741694	+	GA-rich	Low_complexity	Low_complexity	chr2	69741668	69741670	+	ENSMUST00000143954.1,ENSMUSG00000042133.16	Ppig	ENSMUSG00000042133.16	ENSMUST00000143954.1	protein_coding	chr2:69741669-69749548
chr2	69821641	69822028	-	MER89	LTR	ERV1	chr2	69821943	69821945	+	ENSMUST00000135759.1,ENSMUSG00000042155.3	Klhl23	ENSMUSG00000042155.3	ENSMUST00000135759.1	protein_coding	chr2:69821944-69824323
chr2	69872157	69872202	+	(A)n	Simple_repeat	Simple_repeat	chr2	69872201	69872203	-	ENSMUST00000149283.1,ENSMUSG00000089902.1	Gm13625	ENSMUSG00000089902.1	ENSMUST00000149283.1	processed_transcript	chr2:69871412-69872202
chr2	69897296	69897320	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	69897302	69897304	+	ENSMUST00000131553.1,ENSMUSG00000044308.17	Ubr3	ENSMUSG00000044308.17	ENSMUST00000131553.1	protein_coding	chr2:69897303-69938659
chr2	70083004	70083086	+	PB1D11	SINE	Alu	chr2	70083073	70083075	+	ENSMUST00000112243.7,ENSMUSG00000042064.13	Myo3b	ENSMUSG00000042064.13	ENSMUST00000112243.7	protein_coding	chr2:70083074-70429198
chr2	70083047	70083091	+	4.5SRNA	scRNA	scRNA	chr2	70083073	70083075	+	ENSMUST00000112243.7,ENSMUSG00000042064.13	Myo3b	ENSMUSG00000042064.13	ENSMUST00000112243.7	protein_coding	chr2:70083074-70429198
chr2	70552766	70553164	-	MLTR13	LTR	ERVK	chr2	70553071	70553073	+	ENSMUST00000130618.7,ENSMUSG00000070880.10	Gad1	ENSMUSG00000070880.10	ENSMUST00000130618.7	protein_coding	chr2:70553072-70567233
chr2	70562847	70562930	+	CT-rich	Low_complexity	Low_complexity	chr2	70562898	70562900	+	ENSMUST00000130998.7,ENSMUSG00000070880.10	Gad1	ENSMUSG00000070880.10	ENSMUST00000130998.7	protein_coding	chr2:70562899-70585121
chr2	70825639	70825804	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	70825727	70825729	-	ENSMUST00000038584.8,ENSMUSG00000041997.16	Tlk1	ENSMUSG00000041997.16	ENSMUST00000038584.8	protein_coding	chr2:70712407-70825728
chr2	71260430	71260620	+	B2_Mm2	SINE	B2	chr2	71260546	71260548	+	ENSMUST00000138613.1,ENSMUSG00000027012.15	Dync1i2	ENSMUSG00000027012.15	ENSMUST00000138613.1	protein_coding	chr2:71260547-71263058
chr2	71450515	71450615	-	U6	snRNA	snRNA	chr2	71450613	71450615	-	ENSMUST00000157164.1,ENSMUSG00000087789.1	Gm23166	ENSMUSG00000087789.1	ENSMUST00000157164.1	snRNA	chr2:71450514-71450614
chr2	71737753	71737815	+	(CA)n	Simple_repeat	Simple_repeat	chr2	71737814	71737816	+	ENSMUST00000154654.1,ENSMUSG00000087570.1	Gm13647	ENSMUSG00000087570.1	ENSMUST00000154654.1	lincRNA	chr2:71737815-71745397
chr2	71762701	71762776	+	RSINE1	SINE	B4	chr2	71762766	71762768	-	ENSMUST00000118020.1,ENSMUSG00000081878.1	Gm13739	ENSMUSG00000081878.1	ENSMUST00000118020.1	processed_pseudogene	chr2:71762238-71762767
chr2	71981123	71981275	+	GC_rich	Low_complexity	Low_complexity	chr2	71981239	71981241	+	ENSMUST00000090826.11,ENSMUSG00000049044.16	Rapgef4	ENSMUSG00000049044.16	ENSMUST00000090826.11	protein_coding	chr2:71981240-72257474
chr2	71981123	71981275	+	GC_rich	Low_complexity	Low_complexity	chr2	71981246	71981248	+	ENSMUST00000149421.7,ENSMUSG00000049044.16	Rapgef4	ENSMUSG00000049044.16	ENSMUST00000149421.7	protein_coding	chr2:71981247-72034405
chr2	71981123	71981275	+	GC_rich	Low_complexity	Low_complexity	chr2	71981258	71981260	+	ENSMUST00000150234.7,ENSMUSG00000049044.16	Rapgef4	ENSMUSG00000049044.16	ENSMUST00000150234.7	protein_coding	chr2:71981259-72141301
chr2	72800041	72800411	-	RMER4B	LTR	ERVK	chr2	72800153	72800155	-	ENSMUST00000125746.1,ENSMUSG00000085427.7	6430710C18Rik	ENSMUSG00000085427.7	ENSMUST00000125746.1	lincRNA	chr2:72784991-72800154
chr2	72950860	72950996	+	B1_Mus2	SINE	Alu	chr2	72950986	72950988	-	ENSMUST00000175110.1,ENSMUSG00000092851.1	Gm25960	ENSMUSG00000092851.1	ENSMUST00000175110.1	miRNA	chr2:72950863-72950987
chr2	72979278	72979308	+	(CA)n	Simple_repeat	Simple_repeat	chr2	72979285	72979287	-	ENSMUST00000133615.1,ENSMUSG00000027109.16	Sp3	ENSMUSG00000027109.16	ENSMUST00000133615.1	protein_coding	chr2:72936652-72979286
chr2	72979403	72979430	+	(GGGA)n	Simple_repeat	Simple_repeat	chr2	72979423	72979425	+	ENSMUST00000135297.7,ENSMUSG00000063714.15	Sp3os	ENSMUSG00000063714.15	ENSMUST00000135297.7	antisense	chr2:72979424-72988442
chr2	72979403	72979430	+	(GGGA)n	Simple_repeat	Simple_repeat	chr2	72979423	72979425	+	ENSMUST00000123087.7,ENSMUSG00000063714.15	Sp3os	ENSMUSG00000063714.15	ENSMUST00000123087.7	antisense	chr2:72979424-72988677
chr2	72979490	72979517	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	72979515	72979517	+	ENSMUST00000146195.1,ENSMUSG00000063714.15	Sp3os	ENSMUSG00000063714.15	ENSMUST00000146195.1	antisense	chr2:72979516-72988546
chr2	73218884	73219025	+	L1MD1	LINE	L1	chr2	73218923	73218925	-	ENSMUST00000133228.1,ENSMUSG00000027108.15	Ola1	ENSMUSG00000027108.15	ENSMUST00000133228.1	protein_coding	chr2:73212871-73218924
chr2	73421815	73421947	-	RSINE1	SINE	B4	chr2	73421908	73421910	+	ENSMUST00000123663.1,ENSMUSG00000085768.1	Gm13707	ENSMUSG00000085768.1	ENSMUST00000123663.1	antisense	chr2:73421909-73429142
chr2	73632523	73632636	+	PB1D9	SINE	Alu	chr2	73632562	73632564	-	ENSMUST00000231013.1,ENSMUSG00000056486.18	Chn1	ENSMUSG00000056486.18	ENSMUST00000231013.1	protein_coding	chr2:73612336-73632563
chr2	73768194	73769444	-	ORR1D1-int	LTR	ERVL-MaLR	chr2	73768852	73768854	-	ENSMUST00000135904.1,ENSMUSG00000056486.18	Chn1	ENSMUSG00000056486.18	ENSMUST00000135904.1	protein_coding	chr2:73679622-73768853
chr2	73827727	73827867	+	LFSINE_Vert	SINE	tRNA	chr2	73827830	73827832	-	ENSMUST00000184729.1,ENSMUSG00000099302.1	Gm27421	ENSMUSG00000099302.1	ENSMUST00000184729.1	misc_RNA	chr2:73827665-73827831
chr2	74102013	74102468	-	MLTR11A	LTR	ERVK	chr2	74102341	74102343	-	ENSMUST00000151443.1,ENSMUSG00000085387.1	A630050E04Rik	ENSMUSG00000085387.1	ENSMUST00000151443.1	lincRNA	chr2:74100924-74102342
chr2	74135720	74135757	+	AT_rich	Low_complexity	Low_complexity	chr2	74135756	74135758	+	ENSMUST00000132332.1,ENSMUSG00000084791.1	Gm13667	ENSMUSG00000084791.1	ENSMUST00000132332.1	lincRNA	chr2:74135757-74150834
chr2	74532949	74533864	+	L1MEc	LINE	L1	chr2	74533105	74533107	-	ENSMUST00000127168.7,ENSMUSG00000009207.15	Lnpk	ENSMUSG00000009207.15	ENSMUST00000127168.7	protein_coding	chr2:74520341-74533106
chr2	74551796	74551996	+	B3	SINE	B2	chr2	74551893	74551895	-	ENSMUST00000145933.1,ENSMUSG00000009207.15	Lnpk	ENSMUSG00000009207.15	ENSMUST00000145933.1	protein_coding	chr2:74551075-74551894
chr2	74591908	74591947	-	B2_Mm2	SINE	B2	chr2	74591908	74591910	-	ENSMUST00000173086.1,ENSMUSG00000075279.5	Mrpl23-ps1	ENSMUSG00000075279.5	ENSMUST00000173086.1	processed_pseudogene	chr2:74591330-74591909
chr2	74935453	74935514	-	5S	rRNA	rRNA	chr2	74935513	74935515	-	ENSMUST00000122625.1,ENSMUSG00000084574.1	n-R5s198	ENSMUSG00000084574.1	ENSMUST00000122625.1	rRNA	chr2:74935415-74935514
chr2	75873591	75874404	-	RMER1B	Other	Other	chr2	75873955	75873957	+	ENSMUST00000176626.2,ENSMUSG00000042410.16	Agps	ENSMUSG00000042410.16	ENSMUST00000176626.2	protein_coding	chr2:75873956-75888167
chr2	76689751	76689919	+	B3	SINE	B2	chr2	76689852	76689854	+	ENSMUST00000125119.1,ENSMUSG00000002733.8	Plekha3	ENSMUSG00000002733.8	ENSMUST00000125119.1	protein_coding	chr2:76689853-76692764
chr2	77265467	77265778	+	L1MDa	LINE	L1	chr2	77265767	77265769	-	ENSMUST00000102660.7,ENSMUSG00000042272.17	Sestd1	ENSMUSG00000042272.17	ENSMUST00000102660.7	protein_coding	chr2:77180340-77265768
chr2	77280563	77280683	+	G-rich	Low_complexity	Low_complexity	chr2	77280591	77280593	-	ENSMUST00000102659.1,ENSMUSG00000042272.17	Sestd1	ENSMUSG00000042272.17	ENSMUST00000102659.1	protein_coding	chr2:77186555-77280592
chr2	77280563	77280683	+	G-rich	Low_complexity	Low_complexity	chr2	77280588	77280590	-	ENSMUST00000139021.1,ENSMUSG00000042272.17	Sestd1	ENSMUSG00000042272.17	ENSMUST00000139021.1	protein_coding	chr2:77196887-77280589
chr2	77314745	77314938	+	B3A	SINE	B2	chr2	77314750	77314752	+	ENSMUST00000144043.1,ENSMUSG00000085277.1	Gm13943	ENSMUSG00000085277.1	ENSMUST00000144043.1	lincRNA	chr2:77314751-77317035
chr2	77819628	77819684	+	(GA)n	Simple_repeat	Simple_repeat	chr2	77819638	77819640	-	ENSMUST00000129077.1,ENSMUSG00000027016.17	Zfp385b	ENSMUSG00000027016.17	ENSMUST00000129077.1	protein_coding	chr2:77817237-77819639
chr2	77881385	77881535	-	L1ME2	LINE	L1	chr2	77881466	77881468	-	ENSMUST00000154480.1,ENSMUSG00000087353.1	Gm13727	ENSMUSG00000087353.1	ENSMUST00000154480.1	processed_transcript	chr2:77879753-77881467
chr2	78550576	78550737	-	7SK	RNA	RNA	chr2	78550736	78550738	-	ENSMUST00000158837.1,ENSMUSG00000089462.1	Gm23149	ENSMUSG00000089462.1	ENSMUST00000158837.1	misc_RNA	chr2:78550508-78550737
chr2	78918373	78918408	+	(T)n	Simple_repeat	Simple_repeat	chr2	78918392	78918394	+	ENSMUST00000153266.1,ENSMUSG00000027011.14	Ube2e3	ENSMUSG00000027011.14	ENSMUST00000153266.1	protein_coding	chr2:78918393-78920052
chr2	79333668	79333701	+	(A)n	Simple_repeat	Simple_repeat	chr2	79333681	79333683	-	ENSMUST00000147402.1,ENSMUSG00000075256.9	Cerkl	ENSMUSG00000075256.9	ENSMUST00000147402.1	protein_coding	chr2:79332502-79333682
chr2	79348363	79348463	+	U6	snRNA	snRNA	chr2	79348364	79348366	+	ENSMUST00000158290.1,ENSMUSG00000088915.1	Gm22606	ENSMUSG00000088915.1	ENSMUST00000158290.1	snRNA	chr2:79348365-79348467
chr2	79786447	79786996	-	Lx5b	LINE	L1	chr2	79786590	79786592	+	ENSMUST00000144432.1,ENSMUSG00000034683.12	Ppp1r1c	ENSMUSG00000034683.12	ENSMUST00000144432.1	protein_coding	chr2:79786591-79809292
chr2	80394877	80394953	-	PB1D9	SINE	Alu	chr2	80394896	80394898	+	ENSMUST00000138195.1,ENSMUSG00000085921.1	Gm13752	ENSMUSG00000085921.1	ENSMUST00000138195.1	antisense	chr2:80394897-80400525
chr2	80558684	80558786	+	U6	snRNA	snRNA	chr2	80558684	80558686	+	ENSMUST00000082735.1,ENSMUSG00000064669.1	Gm24461	ENSMUSG00000064669.1	ENSMUST00000082735.1	snRNA	chr2:80558685-80558787
chr2	80984082	80984189	-	U6	snRNA	snRNA	chr2	80984188	80984190	-	ENSMUST00000083327.1,ENSMUSG00000065261.1	Gm23452	ENSMUSG00000065261.1	ENSMUST00000083327.1	snRNA	chr2:80984083-80984189
chr2	81543243	81543343	-	AmnSINE1	SINE	Deu	chr2	81543341	81543343	-	ENSMUST00000157569.1,ENSMUSG00000088194.1	Gm23900	ENSMUSG00000088194.1	ENSMUST00000157569.1	rRNA	chr2:81543235-81543342
chr2	81543255	81543344	-	5S	rRNA	rRNA	chr2	81543341	81543343	-	ENSMUST00000157569.1,ENSMUSG00000088194.1	Gm23900	ENSMUSG00000088194.1	ENSMUST00000157569.1	rRNA	chr2:81543235-81543342
chr2	82235158	82235212	+	(TC)n	Simple_repeat	Simple_repeat	chr2	82235172	82235174	+	ENSMUST00000127187.1,ENSMUSG00000070866.4	Zfp804a	ENSMUSG00000070866.4	ENSMUST00000127187.1	protein_coding	chr2:82235173-82256880
chr2	84149984	84150380	+	MTA_Mm	LTR	ERVL-MaLR	chr2	84150054	84150056	+	ENSMUST00000175374.1,ENSMUSG00000093115.1	Gm25972	ENSMUSG00000093115.1	ENSMUST00000175374.1	miRNA	chr2:84150055-84150155
chr2	84476625	84476862	-	RLTR42	LTR	ERVK	chr2	84476747	84476749	-	ENSMUST00000111711.7,ENSMUSG00000027082.15	Tfpi	ENSMUSG00000027082.15	ENSMUST00000111711.7	protein_coding	chr2:84440140-84476748
chr2	84476625	84476862	-	RLTR42	LTR	ERVK	chr2	84476762	84476764	-	ENSMUST00000111714.7,ENSMUSG00000027082.15	Tfpi	ENSMUSG00000027082.15	ENSMUST00000111714.7	protein_coding	chr2:84440140-84476763
chr2	84476625	84476862	-	RLTR42	LTR	ERVK	chr2	84476774	84476776	-	ENSMUST00000090732.9,ENSMUSG00000027082.15	Tfpi	ENSMUSG00000027082.15	ENSMUST00000090732.9	protein_coding	chr2:84440140-84476775
chr2	84506814	84510082	+	IAPEz-int	LTR	ERVK	chr2	84506872	84506874	-	ENSMUST00000126679.7,ENSMUSG00000087362.7	Gm13710	ENSMUSG00000087362.7	ENSMUST00000126679.7	lincRNA	chr2:84500760-84506873
chr2	84531226	84531552	-	MTEa	LTR	ERVL-MaLR	chr2	84531321	84531323	-	ENSMUST00000139492.1,ENSMUSG00000087362.7	Gm13710	ENSMUSG00000087362.7	ENSMUST00000139492.1	lincRNA	chr2:84501171-84531322
chr2	84679132	84679181	+	tRNA-Gly-GGY	tRNA	tRNA	chr2	84679139	84679141	-	ENSMUST00000152149.1,ENSMUSG00000050043.16	Tmx2	ENSMUSG00000050043.16	ENSMUST00000152149.1	protein_coding	chr2:84676106-84679140
chr2	84703262	84703357	+	U6	snRNA	snRNA	chr2	84703261	84703263	+	ENSMUST00000184669.1,ENSMUSG00000099206.1	Gm27942	ENSMUSG00000099206.1	ENSMUST00000184669.1	snRNA	chr2:84703262-84703362
chr2	84714996	84715043	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	84715035	84715037	-	ENSMUST00000125690.1,ENSMUSG00000034075.10	Zdhhc5	ENSMUSG00000034075.10	ENSMUST00000125690.1	protein_coding	chr2:84711264-84715036
chr2	84827356	84827461	+	MIR3	SINE	MIR	chr2	84827383	84827385	+	ENSMUST00000111631.1,ENSMUSG00000027076.10	Timm10	ENSMUSG00000027076.10	ENSMUST00000111631.1	protein_coding	chr2:84827384-84830113
chr2	84928006	84928401	+	MTA_Mm	LTR	ERVL-MaLR	chr2	84928073	84928075	+	ENSMUST00000175102.1,ENSMUSG00000092843.1	Gm24332	ENSMUSG00000092843.1	ENSMUST00000175102.1	miRNA	chr2:84928074-84928175
chr2	84936663	84936721	+	G-rich	Low_complexity	Low_complexity	chr2	84936663	84936665	+	ENSMUST00000090726.5,ENSMUSG00000027074.14	Slc43a3	ENSMUSG00000027074.14	ENSMUST00000090726.5	protein_coding	chr2:84936664-84958509
chr2	84936663	84936721	+	G-rich	Low_complexity	Low_complexity	chr2	84936688	84936690	+	ENSMUST00000155506.1,ENSMUSG00000027074.14	Slc43a3	ENSMUSG00000027074.14	ENSMUST00000155506.1	protein_coding	chr2:84936689-84937681
chr2	85033103	85033247	+	L2a	LINE	L2	chr2	85033193	85033195	-	ENSMUST00000127839.1,ENSMUSG00000027071.14	P2rx3	ENSMUSG00000027071.14	ENSMUST00000127839.1	protein_coding	chr2:85032054-85033194
chr2	85048054	85048085	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	85048054	85048056	+	ENSMUST00000151092.7,ENSMUSG00000033955.12	Tnks1bp1	ENSMUSG00000033955.12	ENSMUST00000151092.7	protein_coding	chr2:85048055-85073044
chr2	85086421	85086621	-	MLT1A0	LTR	ERVL-MaLR	chr2	85086460	85086462	-	ENSMUST00000135659.1,ENSMUSG00000086969.1	4930443O20Rik	ENSMUSG00000086969.1	ENSMUST00000135659.1	processed_transcript	chr2:85073614-85086461
chr2	86020194	86021072	+	MMVL30-int	LTR	ERV1	chr2	86020632	86020634	+	ENSMUST00000213774.1,ENSMUSG00000045392.8	Olfr1033	ENSMUSG00000045392.8	ENSMUST00000213774.1	protein_coding	chr2:86020633-86041432
chr2	86020194	86021072	+	MMVL30-int	LTR	ERV1	chr2	86020639	86020641	+	ENSMUST00000214546.1,ENSMUSG00000045392.8	Olfr1033	ENSMUSG00000045392.8	ENSMUST00000214546.1	protein_coding	chr2:86020640-86043322
chr2	86020194	86021072	+	MMVL30-int	LTR	ERV1	chr2	86020639	86020641	+	ENSMUST00000215682.1,ENSMUSG00000045392.8	Olfr1033	ENSMUSG00000045392.8	ENSMUST00000215682.1	protein_coding	chr2:86020640-86044808
chr2	86034635	86034836	-	URR1B	DNA	hAT-Charlie	chr2	86034764	86034766	+	ENSMUST00000213865.1,ENSMUSG00000045392.8	Olfr1033	ENSMUSG00000045392.8	ENSMUST00000213865.1	protein_coding	chr2:86034765-86044808
chr2	86149585	86150388	-	RMER12C	LTR	ERVK	chr2	86149612	86149614	-	ENSMUST00000215884.1,ENSMUSG00000111802.1	Olfr1041-ps1	ENSMUSG00000111802.1	ENSMUST00000215884.1	unprocessed_pseudogene	chr2:86149343-86149613
chr2	86167471	86167527	+	(TC)n	Simple_repeat	Simple_repeat	chr2	86167521	86167523	-	ENSMUST00000213949.1,ENSMUSG00000075201.2	Olfr1043	ENSMUSG00000075201.2	ENSMUST00000213949.1	protein_coding	chr2:86161890-86167522
chr2	86167471	86167527	+	(TC)n	Simple_repeat	Simple_repeat	chr2	86167521	86167523	-	ENSMUST00000213886.1,ENSMUSG00000075201.2	Olfr1043	ENSMUSG00000075201.2	ENSMUST00000213886.1	protein_coding	chr2:86161890-86167522
chr2	86167471	86167527	+	(TC)n	Simple_repeat	Simple_repeat	chr2	86167521	86167523	-	ENSMUST00000216028.1,ENSMUSG00000075201.2	Olfr1043	ENSMUSG00000075201.2	ENSMUST00000216028.1	protein_coding	chr2:86161890-86167522
chr2	87109652	87109949	-	Lx5c	LINE	L1	chr2	87109944	87109946	-	ENSMUST00000215828.2,ENSMUSG00000075160.3	Olfr259	ENSMUSG00000075160.3	ENSMUST00000215828.2	protein_coding	chr2:87104578-87109945
chr2	87151913	87152251	+	Lx	LINE	L1	chr2	87152086	87152088	-	ENSMUST00000214492.2,ENSMUSG00000075158.5	Olfr1111	ENSMUSG00000075158.5	ENSMUST00000214492.2	protein_coding	chr2:87149181-87152087
chr2	87248034	87248062	+	AT_rich	Low_complexity	Low_complexity	chr2	87248037	87248039	+	ENSMUST00000213513.1,ENSMUSG00000070856.5	Olfr1115	ENSMUSG00000070856.5	ENSMUST00000213513.1	protein_coding	chr2:87248038-87253868
chr2	87256593	87257109	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr2	87256903	87256905	-	ENSMUST00000183480.1,ENSMUSG00000098776.1	Gm27438	ENSMUSG00000098776.1	ENSMUST00000183480.1	miRNA	chr2:87256795-87256904
chr2	87330423	87333805	+	L1_Mus3	LINE	L1	chr2	87333801	87333803	+	ENSMUST00000117332.1,ENSMUSG00000081907.1	Gm13731	ENSMUSG00000081907.1	ENSMUST00000117332.1	processed_pseudogene	chr2:87333802-87333997
chr2	87497034	87497180	-	B1_Mus2	SINE	Alu	chr2	87497092	87497094	-	ENSMUST00000148030.1,ENSMUSG00000025839.3	Pramel7	ENSMUSG00000025839.3	ENSMUST00000148030.1	protein_coding	chr2:87490978-87497093
chr2	87547193	87547377	-	B2_Mm1t	SINE	B2	chr2	87547201	87547203	-	ENSMUST00000120590.1,ENSMUSG00000082417.1	Gm13740	ENSMUSG00000082417.1	ENSMUST00000120590.1	processed_pseudogene	chr2:87546893-87547202
chr2	87829959	87830624	+	Lx8b	LINE	L1	chr2	87830532	87830534	+	ENSMUST00000215230.1,ENSMUSG00000061875.2	Olfr1148	ENSMUSG00000061875.2	ENSMUST00000215230.1	protein_coding	chr2:87830533-87835803
chr2	88454648	88454902	+	(GA)n	Simple_repeat	Simple_repeat	chr2	88454866	88454868	+	ENSMUST00000219871.1,ENSMUSG00000049372.11	Olfr1183	ENSMUSG00000049372.11	ENSMUST00000219871.1	protein_coding	chr2:88454867-88469199
chr2	88454648	88454902	+	(GA)n	Simple_repeat	Simple_repeat	chr2	88454866	88454868	+	ENSMUST00000213115.2,ENSMUSG00000049372.11	Olfr1183	ENSMUSG00000049372.11	ENSMUST00000213115.2	protein_coding	chr2:88454867-88469199
chr2	89029791	89030185	-	MTA_Mm	LTR	ERVL-MaLR	chr2	89029952	89029954	-	ENSMUST00000213669.1,ENSMUSG00000101391.3	Olfr1217	ENSMUSG00000101391.3	ENSMUST00000213669.1	protein_coding	chr2:89021336-89029953
chr2	89029791	89030185	-	MTA_Mm	LTR	ERVL-MaLR	chr2	89029950	89029952	-	ENSMUST00000216592.1,ENSMUSG00000101391.3	Olfr1217	ENSMUSG00000101391.3	ENSMUST00000216592.1	protein_coding	chr2:89021411-89029951
chr2	89056998	89058013	+	Lx9	LINE	L1	chr2	89057363	89057365	-	ENSMUST00000213609.2,ENSMUSG00000075105.3	Olfr1218	ENSMUSG00000075105.3	ENSMUST00000213609.2	protein_coding	chr2:89052296-89057364
chr2	89079405	89080112	+	Lx9	LINE	L1	chr2	89079636	89079638	-	ENSMUST00000213724.1,ENSMUSG00000075104.3	Olfr1219	ENSMUSG00000075104.3	ENSMUST00000213724.1	protein_coding	chr2:89072241-89079637
chr2	89164010	89165813	+	MMERVK10C-int	LTR	ERVK	chr2	89164090	89164092	-	ENSMUST00000099793.2,ENSMUSG00000075099.2	Olfr1224-ps1	ENSMUSG00000075099.2	ENSMUST00000099793.2	protein_coding	chr2:89156238-89164091
chr2	89253833	89254231	-	Lx5b	LINE	L1	chr2	89254061	89254063	-	ENSMUST00000215447.1,ENSMUSG00000099486.3	Olfr1228	ENSMUSG00000099486.3	ENSMUST00000215447.1	protein_coding	chr2:89248001-89254062
chr2	89442907	89443114	+	Lx8b	LINE	L1	chr2	89442999	89443001	-	ENSMUST00000216123.1,ENSMUSG00000111174.1	Olfr1240	ENSMUSG00000111174.1	ENSMUST00000216123.1	protein_coding	chr2:89436296-89443000
chr2	90012150	90012205	+	CYRA11_Mm	Unknown	Y-chromosome	chr2	90012152	90012154	+	ENSMUST00000217065.2,ENSMUSG00000059112.6	Olfr1263	ENSMUSG00000059112.6	ENSMUST00000217065.2	protein_coding	chr2:90012153-90018424
chr2	90012150	90012205	+	CYRA11_Mm	Unknown	Y-chromosome	chr2	90012192	90012194	+	ENSMUST00000216764.2,ENSMUSG00000059112.6	Olfr1263	ENSMUSG00000059112.6	ENSMUST00000216764.2	protein_coding	chr2:90012193-90018424
chr2	90114937	90115117	+	ID_B1	SINE	B4	chr2	90115022	90115024	-	ENSMUST00000117787.3,ENSMUSG00000082574.3	Olfr1268-ps1	ENSMUSG00000082574.3	ENSMUST00000117787.3	polymorphic_pseudogene	chr2:90109095-90115023
chr2	90676949	90677308	-	Lx8	LINE	L1	chr2	90677214	90677216	+	ENSMUST00000057481.6,ENSMUSG00000051329.13	Nup160	ENSMUSG00000051329.13	ENSMUST00000057481.6	protein_coding	chr2:90677215-90736328
chr2	90775422	90775590	+	B3A	SINE	B2	chr2	90775542	90775544	+	ENSMUST00000123955.1,ENSMUSG00000008200.14	Fnbp4	ENSMUSG00000008200.14	ENSMUST00000123955.1	protein_coding	chr2:90775543-90776366
chr2	90847187	90847212	+	GC_rich	Low_complexity	Low_complexity	chr2	90847189	90847191	+	ENSMUST00000148936.1,ENSMUSG00000027282.17	Mtch2	ENSMUSG00000027282.17	ENSMUST00000148936.1	protein_coding	chr2:90847190-90848314
chr2	90863282	90863476	-	B2_Mm2	SINE	B2	chr2	90863458	90863460	+	ENSMUST00000142350.1,ENSMUSG00000027282.17	Mtch2	ENSMUSG00000027282.17	ENSMUST00000142350.1	protein_coding	chr2:90863459-90865388
chr2	90902593	90902792	-	URR1B	DNA	hAT-Charlie	chr2	90902685	90902687	-	ENSMUST00000123426.7,ENSMUSG00000005510.9	Ndufs3	ENSMUSG00000005510.9	ENSMUST00000123426.7	protein_coding	chr2:90894638-90902686
chr2	90917573	90917599	+	(CCCGG)n	Simple_repeat	Simple_repeat	chr2	90917595	90917597	-	ENSMUST00000155621.2,ENSMUSG00000063235.16	Ptpmt1	ENSMUSG00000063235.16	ENSMUST00000155621.2	processed_transcript	chr2:90910994-90917596
chr2	90940314	90940404	+	GC_rich	Low_complexity	Low_complexity	chr2	90940381	90940383	+	ENSMUST00000150546.1,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000150546.1	protein_coding	chr2:90940382-90987754
chr2	90940314	90940404	+	GC_rich	Low_complexity	Low_complexity	chr2	90940396	90940398	+	ENSMUST00000005643.13,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000005643.13	protein_coding	chr2:90940397-91019490
chr2	90940314	90940404	+	GC_rich	Low_complexity	Low_complexity	chr2	90940396	90940398	+	ENSMUST00000111451.9,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000111451.9	protein_coding	chr2:90940397-91019490
chr2	90940314	90940404	+	GC_rich	Low_complexity	Low_complexity	chr2	90940396	90940398	+	ENSMUST00000177642.7,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000177642.7	protein_coding	chr2:90940397-91019490
chr2	90940314	90940404	+	GC_rich	Low_complexity	Low_complexity	chr2	90940396	90940398	+	ENSMUST00000068726.12,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000068726.12	protein_coding	chr2:90940397-91019497
chr2	90940499	90940537	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	90940536	90940538	+	ENSMUST00000154442.1,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000154442.1	protein_coding	chr2:90940537-91001510
chr2	91012438	91012549	+	L1Md_F2	LINE	L1	chr2	91012488	91012490	+	ENSMUST00000127385.1,ENSMUSG00000005506.16	Celf1	ENSMUSG00000005506.16	ENSMUST00000127385.1	protein_coding	chr2:91012489-91013372
chr2	91064346	91064525	+	B3A	SINE	B2	chr2	91064385	91064387	-	ENSMUST00000141328.1,ENSMUSG00000002105.15	Slc39a13	ENSMUSG00000002105.15	ENSMUST00000141328.1	protein_coding	chr2:91063125-91064386
chr2	91070228	91070262	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	91070228	91070230	-	ENSMUST00000079976.9,ENSMUSG00000002105.15	Slc39a13	ENSMUSG00000002105.15	ENSMUST00000079976.9	protein_coding	chr2:91061791-91070229
chr2	91070228	91070262	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	91070238	91070240	-	ENSMUST00000130252.7,ENSMUSG00000002105.15	Slc39a13	ENSMUSG00000002105.15	ENSMUST00000130252.7	protein_coding	chr2:91065581-91070239
chr2	91070228	91070262	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	91070238	91070240	-	ENSMUST00000133047.1,ENSMUSG00000002105.15	Slc39a13	ENSMUSG00000002105.15	ENSMUST00000133047.1	protein_coding	chr2:91069118-91070239
chr2	91200162	91200258	+	U6	snRNA	snRNA	chr2	91200161	91200163	+	ENSMUST00000157393.1,ENSMUSG00000088018.1	Gm23390	ENSMUSG00000088018.1	ENSMUST00000157393.1	snRNA	chr2:91200162-91200267
chr2	91235282	91235426	-	B1_Mus2	SINE	Alu	chr2	91235330	91235332	-	ENSMUST00000152277.7,ENSMUSG00000002109.14	Ddb2	ENSMUSG00000002109.14	ENSMUST00000152277.7	protein_coding	chr2:91211572-91235331
chr2	91259169	91259225	+	(GA)n	Simple_repeat	Simple_repeat	chr2	91259205	91259207	+	ENSMUST00000124658.1,ENSMUSG00000027257.13	Pacsin3	ENSMUSG00000027257.13	ENSMUST00000124658.1	protein_coding	chr2:91259206-91260229
chr2	91407098	91407189	+	(CATATA)n	Simple_repeat	Simple_repeat	chr2	91407135	91407137	-	ENSMUST00000116857.2,ENSMUSG00000080507.2	Gm22071	ENSMUSG00000080507.2	ENSMUST00000116857.2	miRNA	chr2:91407054-91407136
chr2	91648178	91648292	-	RLTR25A	LTR	ERVK	chr2	91648234	91648236	-	ENSMUST00000155045.1,ENSMUSG00000075040.9	Zfp408	ENSMUSG00000075040.9	ENSMUST00000155045.1	protein_coding	chr2:91646278-91648235
chr2	91648207	91648335	-	B1_Mus1	SINE	Alu	chr2	91648234	91648236	-	ENSMUST00000155045.1,ENSMUSG00000075040.9	Zfp408	ENSMUSG00000075040.9	ENSMUST00000155045.1	protein_coding	chr2:91646278-91648235
chr2	91651479	91651625	-	B1_Mus2	SINE	Alu	chr2	91651497	91651499	+	ENSMUST00000139314.7,ENSMUSG00000027247.16	Arhgap1	ENSMUSG00000027247.16	ENSMUST00000139314.7	protein_coding	chr2:91651498-91654531
chr2	91651479	91651625	-	B1_Mus2	SINE	Alu	chr2	91651497	91651499	+	ENSMUST00000154468.7,ENSMUSG00000027247.16	Arhgap1	ENSMUSG00000027247.16	ENSMUST00000154468.7	protein_coding	chr2:91651498-91654533
chr2	91705716	91705808	-	B1_Mus2	SINE	Alu	chr2	91705733	91705735	-	ENSMUST00000136412.1,ENSMUSG00000027244.14	Atg13	ENSMUSG00000027244.14	ENSMUST00000136412.1	protein_coding	chr2:91688713-91705734
chr2	91934390	91934525	-	B1_Mur2	SINE	Alu	chr2	91934510	91934512	-	ENSMUST00000148297.1,ENSMUSG00000040479.11	Dgkz	ENSMUSG00000040479.11	ENSMUST00000148297.1	protein_coding	chr2:91933455-91934511
chr2	92096031	92096196	+	MTEa	LTR	ERVL-MaLR	chr2	92096041	92096043	-	ENSMUST00000150482.1,ENSMUSG00000087197.1	Gm13780	ENSMUSG00000087197.1	ENSMUST00000150482.1	lincRNA	chr2:92043373-92096042
chr2	92184056	92184137	+	RLTR31D_MM	LTR	ERVK	chr2	92184105	92184107	+	ENSMUST00000111294.7,ENSMUSG00000058318.15	Phf21a	ENSMUSG00000058318.15	ENSMUST00000111294.7	protein_coding	chr2:92184106-92361829
chr2	92184270	92184301	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	92184275	92184277	+	ENSMUST00000162146.7,ENSMUSG00000058318.15	Phf21a	ENSMUSG00000058318.15	ENSMUST00000162146.7	protein_coding	chr2:92184276-92320269
chr2	92184270	92184301	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	92184275	92184277	+	ENSMUST00000111292.7,ENSMUSG00000058318.15	Phf21a	ENSMUSG00000058318.15	ENSMUST00000111292.7	protein_coding	chr2:92184276-92360893
chr2	92320331	92320435	+	(CAG)n	Simple_repeat	Simple_repeat	chr2	92320428	92320430	+	ENSMUST00000159727.1,ENSMUSG00000058318.15	Phf21a	ENSMUSG00000058318.15	ENSMUST00000159727.1	protein_coding	chr2:92320429-92330698
chr2	92366697	92366900	-	MIRb	SINE	MIR	chr2	92366775	92366777	-	ENSMUST00000175851.1,ENSMUSG00000040434.16	Large2	ENSMUSG00000040434.16	ENSMUST00000175851.1	protein_coding	chr2:92365975-92366776
chr2	92913386	92913671	+	MLT1H2	LTR	ERVL-MaLR	chr2	92913662	92913664	-	ENSMUST00000123263.1,ENSMUSG00000086980.1	Gm13791	ENSMUSG00000086980.1	ENSMUST00000123263.1	processed_transcript	chr2:92856167-92913663
chr2	93312493	93312521	+	(GGA)n	Simple_repeat	Simple_repeat	chr2	93312514	93312516	-	ENSMUST00000181716.7,ENSMUSG00000027217.13	Tspan18	ENSMUSG00000027217.13	ENSMUST00000181716.7	protein_coding	chr2:93311263-93312515
chr2	93642382	93642578	-	IMPB_01	Satellite	Satellite	chr2	93642383	93642385	+	ENSMUST00000042078.9,ENSMUSG00000040310.12	Alx4	ENSMUSG00000040310.12	ENSMUST00000042078.9	protein_coding	chr2:93642384-93681339
chr2	93642382	93642578	-	IMPB_01	Satellite	Satellite	chr2	93642387	93642389	+	ENSMUST00000111254.1,ENSMUSG00000040310.12	Alx4	ENSMUSG00000040310.12	ENSMUST00000111254.1	protein_coding	chr2:93642388-93681339
chr2	93842225	93842395	-	Tigger5	DNA	TcMar-Tigger	chr2	93842267	93842269	-	ENSMUST00000128719.1,ENSMUSG00000040272.14	Accs	ENSMUSG00000040272.14	ENSMUST00000128719.1	protein_coding	chr2:93839193-93842268
chr2	93842225	93842395	-	Tigger5	DNA	TcMar-Tigger	chr2	93842380	93842382	-	ENSMUST00000140018.1,ENSMUSG00000040272.14	Accs	ENSMUSG00000040272.14	ENSMUST00000140018.1	protein_coding	chr2:93841280-93842381
chr2	94264750	94264888	+	G-rich	Low_complexity	Low_complexity	chr2	94264757	94264759	-	ENSMUST00000134563.1,ENSMUSG00000075020.6	Mir670hg	ENSMUSG00000075020.6	ENSMUST00000134563.1	lincRNA	chr2:94260966-94264758
chr2	94591057	94591445	-	MMSAT4	Satellite	Satellite	chr2	94591420	94591422	-	ENSMUST00000120767.1,ENSMUSG00000083204.1	Gm13788	ENSMUSG00000083204.1	ENSMUST00000120767.1	processed_pseudogene	chr2:94590821-94591421
chr2	95393871	95394375	+	RMER6C	LTR	ERVK	chr2	95394241	95394243	+	ENSMUST00000148637.1,ENSMUSG00000084906.1	Gm13794	ENSMUSG00000084906.1	ENSMUST00000148637.1	lincRNA	chr2:95394242-95397651
chr2	95698036	95700658	+	MMERVK10C-int	LTR	ERVK	chr2	95698035	95698037	-	ENSMUST00000121792.1,ENSMUSG00000083846.1	Gm13797	ENSMUSG00000083846.1	ENSMUST00000121792.1	processed_pseudogene	chr2:95697917-95698036
chr2	95837860	95838209	+	MLT1A0	LTR	ERVL-MaLR	chr2	95838087	95838089	+	ENSMUST00000138883.1,ENSMUSG00000087537.1	Gm13799	ENSMUSG00000087537.1	ENSMUST00000138883.1	lincRNA	chr2:95838088-95840594
chr2	97083247	97084082	-	Lx3A	LINE	L1	chr2	97083560	97083562	-	ENSMUST00000170085.1,ENSMUSG00000091061.1	4930445B16Rik	ENSMUSG00000091061.1	ENSMUST00000170085.1	lincRNA	chr2:96987018-97083561
chr2	97467608	97467692	+	T-rich	Low_complexity	Low_complexity	chr2	97467656	97467658	+	ENSMUST00000059049.7,ENSMUSG00000050587.14	Lrrc4c	ENSMUSG00000050587.14	ENSMUST00000059049.7	protein_coding	chr2:97467657-97631664
chr2	98662234	98662500	-	GSAT_MM	Satellite	Satellite	chr2	98662236	98662238	+	ENSMUST00000099684.3,ENSMUSG00000075015.3	Gm10801	ENSMUSG00000075015.3	ENSMUST00000099684.3	protein_coding	chr2:98662237-98664083
chr2	98666544	98667332	+	GSAT_MM	Satellite	Satellite	chr2	98667300	98667302	-	ENSMUST00000099683.1,ENSMUSG00000075014.1	Gm10800	ENSMUSG00000075014.1	ENSMUST00000099683.1	protein_coding	chr2:98666547-98667301
chr2	101584833	101585188	+	ORR1D2	LTR	ERVL-MaLR	chr2	101584933	101584935	-	ENSMUST00000138903.1,ENSMUSG00000027165.16	B230118H07Rik	ENSMUSG00000027165.16	ENSMUST00000138903.1	protein_coding	chr2:101562230-101584934
chr2	101678433	101678500	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	101678439	101678441	+	ENSMUST00000004949.7,ENSMUSG00000027164.8	Traf6	ENSMUSG00000027164.8	ENSMUST00000004949.7	protein_coding	chr2:101678440-101701669
chr2	101797709	101797750	+	CT-rich	Low_complexity	Low_complexity	chr2	101797732	101797734	-	ENSMUST00000140387.1,ENSMUSG00000032841.15	Prr5l	ENSMUSG00000032841.15	ENSMUST00000140387.1	protein_coding	chr2:101772295-101797733
chr2	102400200	102400431	+	C-rich	Low_complexity	Low_complexity	chr2	102400256	102400258	-	ENSMUST00000152929.1,ENSMUSG00000027189.16	Trim44	ENSMUSG00000027189.16	ENSMUST00000152929.1	protein_coding	chr2:102304494-102400257
chr2	102400899	102400924	+	GC_rich	Low_complexity	Low_complexity	chr2	102400899	102400901	-	ENSMUST00000102573.7,ENSMUSG00000027189.16	Trim44	ENSMUSG00000027189.16	ENSMUST00000102573.7	protein_coding	chr2:102300119-102400900
chr2	102897959	102898066	+	U6	snRNA	snRNA	chr2	102897959	102897961	+	ENSMUST00000083749.1,ENSMUSG00000065683.1	Gm23731	ENSMUSG00000065683.1	ENSMUST00000083749.1	snRNA	chr2:102897960-102898066
chr2	103098967	103099221	-	B4	SINE	B4	chr2	103099154	103099156	+	ENSMUST00000077233.1,ENSMUSG00000058281.1	Gm10038	ENSMUSG00000058281.1	ENSMUST00000077233.1	pseudogene	chr2:103099155-103099601
chr2	103178072	103178247	-	MER20	DNA	hAT-Charlie	chr2	103178170	103178172	+	ENSMUST00000151028.1,ENSMUSG00000087032.1	Gm13874	ENSMUSG00000087032.1	ENSMUST00000151028.1	lincRNA	chr2:103178171-103182894
chr2	103389010	103389228	+	MIR	SINE	MIR	chr2	103389043	103389045	-	ENSMUST00000144657.7,ENSMUSG00000070794.11	BC016548	ENSMUSG00000070794.11	ENSMUST00000144657.7	lincRNA	chr2:103377643-103389044
chr2	103389010	103389228	+	MIR	SINE	MIR	chr2	103389041	103389043	-	ENSMUST00000153797.1,ENSMUSG00000070794.11	BC016548	ENSMUSG00000070794.11	ENSMUST00000153797.1	lincRNA	chr2:103383979-103389042
chr2	103448333	103448821	-	Lx9	LINE	L1	chr2	103448737	103448739	+	ENSMUST00000152055.1,ENSMUSG00000027186.14	Elf5	ENSMUSG00000027186.14	ENSMUST00000152055.1	protein_coding	chr2:103448738-103449823
chr2	103714991	103715097	-	PB1D10	SINE	Alu	chr2	103715034	103715036	+	ENSMUST00000138580.1,ENSMUSG00000032724.5	Abtb2	ENSMUSG00000032724.5	ENSMUST00000138580.1	protein_coding	chr2:103715035-103717217
chr2	103714991	103715097	-	PB1D10	SINE	Alu	chr2	103715080	103715082	+	ENSMUST00000131122.1,ENSMUSG00000032724.5	Abtb2	ENSMUSG00000032724.5	ENSMUST00000131122.1	protein_coding	chr2:103715081-103718423
chr2	103758303	103758527	-	ID_B1	SINE	B4	chr2	103758415	103758417	-	ENSMUST00000148798.1,ENSMUSG00000027185.15	Nat10	ENSMUSG00000027185.15	ENSMUST00000148798.1	protein_coding	chr2:103757236-103758416
chr2	103774177	103774323	+	B3A	SINE	B2	chr2	103774271	103774273	-	ENSMUST00000132537.1,ENSMUSG00000027184.14	Caprin1	ENSMUSG00000027184.14	ENSMUST00000132537.1	protein_coding	chr2:103771711-103774272
chr2	103810348	103810706	-	RLTR16	LTR	ERVK	chr2	103810621	103810623	-	ENSMUST00000143559.1,ENSMUSG00000086687.1	4930547E08Rik	ENSMUSG00000086687.1	ENSMUST00000143559.1	processed_transcript	chr2:103804452-103810622
chr2	103911943	103912153	+	B3	SINE	B2	chr2	103912023	103912025	+	ENSMUST00000149025.1,ENSMUSG00000084756.1	Gm13881	ENSMUSG00000084756.1	ENSMUST00000149025.1	lincRNA	chr2:103912024-103918960
chr2	104065814	104065932	-	B1_Mm	SINE	Alu	chr2	104065825	104065827	+	ENSMUST00000104891.1,ENSMUSG00000078091.1	Gm10912	ENSMUSG00000078091.1	ENSMUST00000104891.1	protein_coding	chr2:104065826-104067486
chr2	104289859	104289947	+	5S	rRNA	rRNA	chr2	104289859	104289861	+	ENSMUST00000158075.1,ENSMUSG00000088700.1	Gm25554	ENSMUSG00000088700.1	ENSMUST00000158075.1	rRNA	chr2:104289860-104289972
chr2	104558977	104559658	+	RLTR16B_MM	LTR	ERVK	chr2	104559162	104559164	+	ENSMUST00000146553.7,ENSMUSG00000086454.7	Platr14	ENSMUSG00000086454.7	ENSMUST00000146553.7	processed_transcript	chr2:104559163-104568056
chr2	104558977	104559658	+	RLTR16B_MM	LTR	ERVK	chr2	104559178	104559180	+	ENSMUST00000136364.7,ENSMUSG00000086454.7	Platr14	ENSMUSG00000086454.7	ENSMUST00000136364.7	processed_transcript	chr2:104559179-104568053
chr2	104558977	104559658	+	RLTR16B_MM	LTR	ERVK	chr2	104559183	104559185	+	ENSMUST00000125854.7,ENSMUSG00000086454.7	Platr14	ENSMUSG00000086454.7	ENSMUST00000125854.7	processed_transcript	chr2:104559184-104571429
chr2	104558977	104559658	+	RLTR16B_MM	LTR	ERVK	chr2	104559191	104559193	+	ENSMUST00000127350.1,ENSMUSG00000086454.7	Platr14	ENSMUSG00000086454.7	ENSMUST00000127350.1	processed_transcript	chr2:104559192-104568129
chr2	104558977	104559658	+	RLTR16B_MM	LTR	ERVK	chr2	104559458	104559460	+	ENSMUST00000127237.1,ENSMUSG00000086454.7	Platr14	ENSMUSG00000086454.7	ENSMUST00000127237.1	processed_transcript	chr2:104559459-104568050
chr2	104567156	104567289	-	ID_B1	SINE	B4	chr2	104567196	104567198	+	ENSMUST00000150581.1,ENSMUSG00000086454.7	Platr14	ENSMUSG00000086454.7	ENSMUST00000150581.1	processed_transcript	chr2:104567197-104568832
chr2	104590515	104590544	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	104590522	104590524	+	ENSMUST00000028599.7,ENSMUSG00000027176.8	Cstf3	ENSMUSG00000027176.8	ENSMUST00000028599.7	protein_coding	chr2:104590523-104665429
chr2	104590515	104590544	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	104590531	104590533	+	ENSMUST00000122900.1,ENSMUSG00000027176.8	Cstf3	ENSMUSG00000027176.8	ENSMUST00000122900.1	protein_coding	chr2:104590532-104611406
chr2	104655419	104655611	-	B2_Mm1t	SINE	B2	chr2	104655539	104655541	+	ENSMUST00000124944.1,ENSMUSG00000027176.8	Cstf3	ENSMUSG00000027176.8	ENSMUST00000124944.1	protein_coding	chr2:104655540-104663438
chr2	104716248	104716815	-	MT2B2	LTR	ERVL	chr2	104716378	104716380	-	ENSMUST00000099659.2,ENSMUSG00000074997.3	Pin1rt1	ENSMUSG00000074997.3	ENSMUST00000099659.2	protein_coding	chr2:104713926-104716379
chr2	104816760	104816823	+	G-rich	Low_complexity	Low_complexity	chr2	104816759	104816761	-	ENSMUST00000231375.1,ENSMUSG00000074994.5	Qser1	ENSMUSG00000074994.5	ENSMUST00000231375.1	protein_coding	chr2:104754795-104816760
chr2	104867121	104867999	+	RMER19B	LTR	ERVK	chr2	104867804	104867806	+	ENSMUST00000127840.7,ENSMUSG00000045106.12	Ccdc73	ENSMUSG00000045106.12	ENSMUST00000127840.7	protein_coding	chr2:104867805-104951567
chr2	105092008	105092157	+	(TCTG)n	Simple_repeat	Simple_repeat	chr2	105092017	105092019	+	ENSMUST00000111107.1,ENSMUSG00000079175.1	Gm11060	ENSMUSG00000079175.1	ENSMUST00000111107.1	protein_coding	chr2:105092018-105093760
chr2	105122044	105122118	+	IMPB_01	Satellite	Satellite	chr2	105122050	105122052	-	ENSMUST00000184714.1,ENSMUSG00000099166.1	Gm27715	ENSMUSG00000099166.1	ENSMUST00000184714.1	misc_RNA	chr2:105121792-105122051
chr2	105162720	105162811	+	(GA)n	Simple_repeat	Simple_repeat	chr2	105162807	105162809	+	ENSMUST00000153944.1,ENSMUSG00000016458.14	Wt1	ENSMUSG00000016458.14	ENSMUST00000153944.1	protein_coding	chr2:105162808-105170011
chr2	105475944	105477047	+	RMER1B	Other	Other	chr2	105476500	105476502	+	ENSMUST00000130677.1,ENSMUSG00000086764.1	4930527A07Rik	ENSMUSG00000086764.1	ENSMUST00000130677.1	lincRNA	chr2:105476501-105477357
chr2	105661292	105661362	+	(CA)n	Simple_repeat	Simple_repeat	chr2	105661342	105661344	-	ENSMUST00000194826.2,ENSMUSG00000102424.2	Paupar	ENSMUSG00000102424.2	ENSMUST00000194826.2	lincRNA	chr2:105657862-105661343
chr2	105682545	105682582	+	(GGAGA)n	Simple_repeat	Simple_repeat	chr2	105682546	105682548	+	ENSMUST00000145744.7,ENSMUSG00000027168.21	Pax6	ENSMUSG00000027168.21	ENSMUST00000145744.7	protein_coding	chr2:105682547-105692243
chr2	105683668	105683798	+	(TTC)n	Simple_repeat	Simple_repeat	chr2	105683753	105683755	+	ENSMUST00000123000.2,ENSMUSG00000027168.21	Pax6	ENSMUSG00000027168.21	ENSMUST00000123000.2	protein_coding	chr2:105683754-105684943
chr2	105992739	105992883	-	B1_Mus1	SINE	Alu	chr2	105992756	105992758	+	ENSMUST00000175622.1,ENSMUSG00000093363.1	Gm22002	ENSMUSG00000093363.1	ENSMUST00000175622.1	miRNA	chr2:105992757-105992881
chr2	105997031	105997139	+	5S	rRNA	rRNA	chr2	105997031	105997033	+	ENSMUST00000122622.1,ENSMUSG00000084571.1	n-R5s201	ENSMUSG00000084571.1	ENSMUST00000122622.1	rRNA	chr2:105997032-105997147
chr2	106916562	106916775	+	ID_B1	SINE	B4	chr2	106916770	106916772	+	ENSMUST00000137252.1,ENSMUSG00000085530.1	Gm13901	ENSMUSG00000085530.1	ENSMUST00000137252.1	processed_pseudogene	chr2:106916771-106917238
chr2	107594406	107600791	-	IAPEz-int	LTR	ERVK	chr2	107600538	107600540	-	ENSMUST00000090043.6,ENSMUSG00000052005.8	Gm9864	ENSMUSG00000052005.8	ENSMUST00000090043.6	pseudogene	chr2:107595630-107600539
chr2	108080042	108080246	+	L1MC	LINE	L1	chr2	108080041	108080043	-	ENSMUST00000104223.1,ENSMUSG00000077411.1	Gm23749	ENSMUSG00000077411.1	ENSMUST00000104223.1	snoRNA	chr2:108079912-108080042
chr2	108290996	108291874	+	RMER19B	LTR	ERVK	chr2	108291318	108291320	-	ENSMUST00000156541.1,ENSMUSG00000086758.1	Gm13912	ENSMUSG00000086758.1	ENSMUST00000156541.1	lincRNA	chr2:108183716-108291319
chr2	109148388	109148909	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr2	109148697	109148699	-	ENSMUST00000103799.1,ENSMUSG00000076987.1	Gm24115	ENSMUSG00000076987.1	ENSMUST00000103799.1	miRNA	chr2:109148589-109148698
chr2	109292003	109292059	+	(TCTG)n	Simple_repeat	Simple_repeat	chr2	109292022	109292024	+	ENSMUST00000162515.1,ENSMUSG00000027115.14	Kif18a	ENSMUSG00000027115.14	ENSMUST00000162515.1	protein_coding	chr2:109292023-109296060
chr2	109913271	109913428	+	L1MA4	LINE	L1	chr2	109913318	109913320	-	ENSMUST00000146110.1,ENSMUSG00000063751.6	Platr8	ENSMUSG00000063751.6	ENSMUST00000146110.1	processed_transcript	chr2:109902396-109913319
chr2	110023510	110029127	-	L1Md_F3	LINE	L1	chr2	110028772	110028774	+	ENSMUST00000078939.5,ENSMUSG00000027160.16	Ccdc34	ENSMUSG00000027160.16	ENSMUST00000078939.5	protein_coding	chr2:110028773-110040717
chr2	110037976	110038217	-	MLT1B	LTR	ERVL-MaLR	chr2	110038026	110038028	+	ENSMUST00000152930.1,ENSMUSG00000027160.16	Ccdc34	ENSMUSG00000027160.16	ENSMUST00000152930.1	protein_coding	chr2:110038027-110044849
chr2	110050463	110050586	+	MER5B	DNA	hAT-Charlie	chr2	110050475	110050477	-	ENSMUST00000153332.1,ENSMUSG00000086186.1	Ccdc34os	ENSMUSG00000086186.1	ENSMUST00000153332.1	antisense	chr2:110031250-110050476
chr2	110050463	110050586	+	MER5B	DNA	hAT-Charlie	chr2	110050478	110050480	-	ENSMUST00000123633.1,ENSMUSG00000086186.1	Ccdc34os	ENSMUSG00000086186.1	ENSMUST00000123633.1	antisense	chr2:110031251-110050479
chr2	110218002	110218105	+	U6	snRNA	snRNA	chr2	110218002	110218004	+	ENSMUST00000082845.1,ENSMUSG00000064779.1	Gm22997	ENSMUSG00000064779.1	ENSMUST00000082845.1	snRNA	chr2:110218003-110218109
chr2	111204417	111206052	+	L1VL4	LINE	L1	chr2	111205198	111205200	-	ENSMUST00000142636.7,ENSMUSG00000027157.10	4930430A15Rik	ENSMUSG00000027157.10	ENSMUST00000142636.7	protein_coding	chr2:111162061-111205199
chr2	111328387	111328549	+	RMER17A	LTR	ERVK	chr2	111328420	111328422	+	ENSMUST00000090326.1,ENSMUSG00000095156.2	Olfr1281	ENSMUSG00000095156.2	ENSMUST00000090326.1	protein_coding	chr2:111328421-111329338
chr2	111408374	111408397	+	(CA)n	Simple_repeat	Simple_repeat	chr2	111408395	111408397	+	ENSMUST00000208523.3,ENSMUSG00000109521.3	Olfr1285	ENSMUSG00000109521.3	ENSMUST00000208523.3	transcribed_unprocessed_pseudogene	chr2:111408396-111409298
chr2	111667029	111667856	+	RMER19B	LTR	ERVK	chr2	111667436	111667438	+	ENSMUST00000208175.1,ENSMUSG00000109389.1	Olfr1300-ps1	ENSMUSG00000109389.1	ENSMUST00000208175.1	polymorphic_pseudogene	chr2:111667437-111693319
chr2	111697636	111699052	+	Lx2A	LINE	L1	chr2	111698877	111698879	-	ENSMUST00000119505.1,ENSMUSG00000082091.1	Gm13922	ENSMUSG00000082091.1	ENSMUST00000119505.1	processed_pseudogene	chr2:111698723-111698878
chr2	111821045	111823491	+	L1_Mur3	LINE	L1	chr2	111823415	111823417	-	ENSMUST00000208032.1,ENSMUSG00000109423.1	Olfr1304-ps1	ENSMUSG00000109423.1	ENSMUST00000208032.1	unprocessed_pseudogene	chr2:111823228-111823416
chr2	112155095	112155402	+	Lx8	LINE	L1	chr2	112155317	112155319	+	ENSMUST00000058176.6,ENSMUSG00000049758.7	Olfr1318	ENSMUSG00000049758.7	ENSMUST00000058176.6	protein_coding	chr2:112155318-112157007
chr2	112379219	112379241	+	GC_rich	Low_complexity	Low_complexity	chr2	112379225	112379227	+	ENSMUST00000151257.1,ENSMUSG00000027132.3	Katnbl1	ENSMUSG00000027132.3	ENSMUST00000151257.1	protein_coding	chr2:112379226-112407518
chr2	112469276	112469367	-	5S	rRNA	rRNA	chr2	112469365	112469367	-	ENSMUST00000104517.1,ENSMUSG00000077705.1	n-R5s202	ENSMUSG00000077705.1	ENSMUST00000104517.1	rRNA	chr2:112469253-112469366
chr2	112613963	112614094	+	B1F2	SINE	Alu	chr2	112614029	112614031	+	ENSMUST00000199821.1,ENSMUSG00000105420.1	Gm44374	ENSMUSG00000105420.1	ENSMUST00000199821.1	miRNA	chr2:112614030-112614169
chr2	113217077	113217141	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	113217086	113217088	-	ENSMUST00000208151.1,ENSMUSG00000057378.15	Ryr3	ENSMUSG00000057378.15	ENSMUST00000208151.1	protein_coding	chr2:112631355-113217087
chr2	113217077	113217141	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	113217086	113217088	-	ENSMUST00000208290.1,ENSMUSG00000057378.15	Ryr3	ENSMUSG00000057378.15	ENSMUST00000208290.1	protein_coding	chr2:112631359-113217087
chr2	113217077	113217141	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	113217095	113217097	-	ENSMUST00000128192.1,ENSMUSG00000057378.15	Ryr3	ENSMUSG00000057378.15	ENSMUST00000128192.1	protein_coding	chr2:112996535-113217096
chr2	113400245	113400638	+	MTA_Mm	LTR	ERVL-MaLR	chr2	113400458	113400460	+	ENSMUST00000154834.1,ENSMUSG00000085508.1	Gm13965	ENSMUSG00000085508.1	ENSMUST00000154834.1	processed_transcript	chr2:113400459-113410250
chr2	113708523	113708930	-	MTE2b	LTR	ERVL-MaLR	chr2	113708670	113708672	+	ENSMUST00000153151.1,ENSMUSG00000044042.18	Fmn1	ENSMUSG00000044042.18	ENSMUST00000153151.1	protein_coding	chr2:113708671-113709730
chr2	113708523	113708930	-	MTE2b	LTR	ERVL-MaLR	chr2	113708549	113708551	-	ENSMUST00000123377.1,ENSMUSG00000084798.1	4930533B01Rik	ENSMUSG00000084798.1	ENSMUST00000123377.1	antisense	chr2:113691053-113708550
chr2	114013737	114013764	+	GC_rich	Low_complexity	Low_complexity	chr2	114013743	114013745	+	ENSMUST00000143993.1,ENSMUSG00000087694.8	A530058N18Rik	ENSMUSG00000087694.8	ENSMUST00000143993.1	processed_transcript	chr2:114013744-114017513
chr2	114013737	114013764	+	GC_rich	Low_complexity	Low_complexity	chr2	114013744	114013746	+	ENSMUST00000134129.1,ENSMUSG00000087694.8	A530058N18Rik	ENSMUSG00000087694.8	ENSMUST00000134129.1	processed_transcript	chr2:114013745-114031451
chr2	114056042	114056707	-	L1MA8	LINE	L1	chr2	114056287	114056289	+	ENSMUST00000134456.7,ENSMUSG00000092397.7	C130080G10Rik	ENSMUSG00000092397.7	ENSMUST00000134456.7	antisense	chr2:114056288-114061248
chr2	114056042	114056707	-	L1MA8	LINE	L1	chr2	114056312	114056314	+	ENSMUST00000155185.1,ENSMUSG00000092397.7	C130080G10Rik	ENSMUSG00000092397.7	ENSMUST00000155185.1	antisense	chr2:114056313-114064868
chr2	114180871	114181363	-	MT2_Mm	LTR	ERVL	chr2	114181047	114181049	-	ENSMUST00000147191.7,ENSMUSG00000040383.16	Aqr	ENSMUSG00000040383.16	ENSMUST00000147191.7	protein_coding	chr2:114170045-114181048
chr2	114186847	114187339	-	MT2_Mm	LTR	ERVL	chr2	114187023	114187025	-	ENSMUST00000154317.1,ENSMUSG00000040383.16	Aqr	ENSMUSG00000040383.16	ENSMUST00000154317.1	protein_coding	chr2:114170045-114187024
chr2	114654865	114654890	+	(CGTG)n	Simple_repeat	Simple_repeat	chr2	114654886	114654888	-	ENSMUST00000055144.7,ENSMUSG00000057147.13	Dph6	ENSMUSG00000057147.13	ENSMUST00000055144.7	protein_coding	chr2:114516644-114654887
chr2	116064465	116064541	+	(CA)n	Simple_repeat	Simple_repeat	chr2	116064511	116064513	-	ENSMUST00000074285.7,ENSMUSG00000027210.20	Meis2	ENSMUSG00000027210.20	ENSMUST00000074285.7	protein_coding	chr2:115863300-116064512
chr2	116064465	116064541	+	(CA)n	Simple_repeat	Simple_repeat	chr2	116064467	116064469	-	ENSMUST00000133990.3,ENSMUSG00000027210.20	Meis2	ENSMUSG00000027210.20	ENSMUST00000133990.3	protein_coding	chr2:116049084-116064468
chr2	116065019	116065116	+	CT-rich	Low_complexity	Low_complexity	chr2	116065046	116065048	-	ENSMUST00000028639.12,ENSMUSG00000027210.20	Meis2	ENSMUSG00000027210.20	ENSMUST00000028639.12	protein_coding	chr2:115863064-116065047
chr2	116065019	116065116	+	CT-rich	Low_complexity	Low_complexity	chr2	116065046	116065048	-	ENSMUST00000102538.10,ENSMUSG00000027210.20	Meis2	ENSMUSG00000027210.20	ENSMUST00000102538.10	protein_coding	chr2:115863064-116065047
chr2	117121351	117121392	+	GC_rich	Low_complexity	Low_complexity	chr2	117121373	117121375	+	ENSMUST00000028829.12,ENSMUSG00000027351.14	Spred1	ENSMUSG00000027351.14	ENSMUST00000028829.12	protein_coding	chr2:117121374-117182279
chr2	117121604	117121670	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	117121637	117121639	+	ENSMUST00000110901.1,ENSMUSG00000027351.14	Spred1	ENSMUSG00000027351.14	ENSMUST00000110901.1	protein_coding	chr2:117121638-117172854
chr2	117248270	117248433	+	U1	snRNA	snRNA	chr2	117248270	117248272	+	ENSMUST00000083911.1,ENSMUSG00000065845.1	Gm25189	ENSMUSG00000065845.1	ENSMUST00000083911.1	snRNA	chr2:117248271-117248434
chr2	117812599	117813462	-	L1Md_F2	LINE	L1	chr2	117812812	117812814	-	ENSMUST00000154409.1,ENSMUSG00000086203.1	Gm13985	ENSMUSG00000086203.1	ENSMUST00000154409.1	lincRNA	chr2:117806678-117812813
chr2	117821614	117821936	+	MLT2B1	LTR	ERVL	chr2	117821927	117821929	+	ENSMUST00000149239.1,ENSMUSG00000086221.1	4930412B13Rik	ENSMUSG00000086221.1	ENSMUST00000149239.1	lincRNA	chr2:117821928-117909136
chr2	118142057	118142717	-	Lx9	LINE	L1	chr2	118142088	118142090	-	ENSMUST00000231041.1,ENSMUSG00000027344.14	Fsip1	ENSMUSG00000027344.14	ENSMUST00000231041.1	protein_coding	chr2:118130455-118142089
chr2	118248661	118248815	-	RLTR17B_Mm	LTR	ERVK	chr2	118248781	118248783	-	ENSMUST00000175627.1,ENSMUSG00000093368.1	Gm22800	ENSMUSG00000093368.1	ENSMUST00000175627.1	miRNA	chr2:118248689-118248782
chr2	118351237	118351325	+	5S	rRNA	rRNA	chr2	118351237	118351239	+	ENSMUST00000157872.1,ENSMUSG00000088497.1	Gm22651	ENSMUSG00000088497.1	ENSMUST00000157872.1	rRNA	chr2:118351238-118351331
chr2	118631465	118631541	+	(TG)n	Simple_repeat	Simple_repeat	chr2	118631539	118631541	+	ENSMUST00000126013.1,ENSMUSG00000040084.9	Bub1b	ENSMUSG00000040084.9	ENSMUST00000126013.1	protein_coding	chr2:118631540-118636749
chr2	118709642	118709875	+	MIRb	SINE	MIR	chr2	118709740	118709742	-	ENSMUST00000126907.1,ENSMUSG00000040061.17	Plcb2	ENSMUSG00000040061.17	ENSMUST00000126907.1	protein_coding	chr2:118708699-118709741
chr2	118714074	118714220	+	B1_Mus2	SINE	Alu	chr2	118714103	118714105	-	ENSMUST00000127248.1,ENSMUSG00000040061.17	Plcb2	ENSMUSG00000040061.17	ENSMUST00000127248.1	protein_coding	chr2:118710817-118714104
chr2	119214376	119214536	-	IMPB_01	Satellite	Satellite	chr2	119214455	119214457	+	ENSMUST00000123323.1,ENSMUSG00000068580.11	Zfyve19	ENSMUSG00000068580.11	ENSMUST00000123323.1	protein_coding	chr2:119214456-119216397
chr2	119477566	119477616	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	119477612	119477614	-	ENSMUST00000110808.1,ENSMUSG00000034154.15	Ino80	ENSMUSG00000034154.15	ENSMUST00000110808.1	protein_coding	chr2:119402709-119477613
chr2	119509211	119509333	-	ID_B1	SINE	B4	chr2	119509228	119509230	-	ENSMUST00000119645.1,ENSMUSG00000082369.1	Gm14208	ENSMUSG00000082369.1	ENSMUST00000119645.1	processed_pseudogene	chr2:119508552-119509229
chr2	119631117	119631236	+	5S	rRNA	rRNA	chr2	119631117	119631119	+	ENSMUST00000082972.1,ENSMUSG00000064906.1	n-R5s204	ENSMUSG00000064906.1	ENSMUST00000082972.1	rRNA	chr2:119631118-119631236
chr2	119710995	119711055	+	GA-rich	Low_complexity	Low_complexity	chr2	119710995	119710997	+	ENSMUST00000149904.1,ENSMUSG00000027304.9	Rtf1	ENSMUSG00000027304.9	ENSMUST00000149904.1	protein_coding	chr2:119710996-119712462
chr2	119793941	119794043	-	U6	snRNA	snRNA	chr2	119794042	119794044	-	ENSMUST00000083230.1,ENSMUSG00000065164.1	Gm23814	ENSMUSG00000065164.1	ENSMUST00000083230.1	snRNA	chr2:119793942-119794043
chr2	120245548	120245615	-	B3	SINE	B2	chr2	120245597	120245599	-	ENSMUST00000155641.1,ENSMUSG00000087555.1	Gm13997	ENSMUSG00000087555.1	ENSMUST00000155641.1	processed_transcript	chr2:120244921-120245598
chr2	120411062	120411415	-	MTD	LTR	ERVL-MaLR	chr2	120411412	120411414	+	ENSMUST00000132835.7,ENSMUSG00000062646.12	Ganc	ENSMUSG00000062646.12	ENSMUST00000132835.7	protein_coding	chr2:120411413-120436739
chr2	120423492	120423567	-	ID_B1	SINE	B4	chr2	120423500	120423502	+	ENSMUST00000145134.1,ENSMUSG00000062646.12	Ganc	ENSMUSG00000062646.12	ENSMUST00000145134.1	protein_coding	chr2:120423501-120431015
chr2	120563792	120563839	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	120563806	120563808	-	ENSMUST00000055241.12,ENSMUSG00000027288.16	Zfp106	ENSMUSG00000027288.16	ENSMUST00000055241.12	protein_coding	chr2:120506820-120563807
chr2	120563792	120563839	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	120563813	120563815	-	ENSMUST00000141874.7,ENSMUSG00000027288.16	Zfp106	ENSMUSG00000027288.16	ENSMUST00000141874.7	protein_coding	chr2:120526263-120563814
chr2	120563792	120563839	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	120563833	120563835	-	ENSMUST00000147353.1,ENSMUSG00000027288.16	Zfp106	ENSMUSG00000027288.16	ENSMUST00000147353.1	protein_coding	chr2:120535420-120563834
chr2	120668909	120669193	-	RLTR14	LTR	ERV1	chr2	120668959	120668961	+	ENSMUST00000229722.1,ENSMUSG00000033705.17	Stard9	ENSMUSG00000033705.17	ENSMUST00000229722.1	protein_coding	chr2:120668960-120678303
chr2	120871477	120871626	-	LTR33A_	LTR	ERVL	chr2	120871525	120871527	-	ENSMUST00000153868.1,ENSMUSG00000027272.5	Ubr1	ENSMUSG00000027272.5	ENSMUST00000153868.1	protein_coding	chr2:120862573-120871526
chr2	120977008	120977079	-	MIRc	SINE	MIR	chr2	120977016	120977018	+	ENSMUST00000067582.13,ENSMUSG00000054484.14	Tmem62	ENSMUSG00000054484.14	ENSMUST00000067582.13	protein_coding	chr2:120977017-121007852
chr2	120977008	120977079	-	MIRc	SINE	MIR	chr2	120977016	120977018	+	ENSMUST00000139428.7,ENSMUSG00000054484.14	Tmem62	ENSMUSG00000054484.14	ENSMUST00000139428.7	protein_coding	chr2:120977017-121007852
chr2	121004088	121004301	+	U3	snRNA	snRNA	chr2	121004088	121004090	+	ENSMUST00000083949.2,ENSMUSG00000065883.2	Gm22865	ENSMUSG00000065883.2	ENSMUST00000083949.2	snoRNA	chr2:121004089-121004302
chr2	121135289	121135489	-	B3	SINE	B2	chr2	121135295	121135297	-	ENSMUST00000158384.1,ENSMUSG00000089009.1	Gm23858	ENSMUSG00000089009.1	ENSMUST00000158384.1	snRNA	chr2:121135191-121135296
chr2	121150022	121150150	-	B1F	SINE	Alu	chr2	121150071	121150073	+	ENSMUST00000152164.1,ENSMUSG00000027259.15	Adal	ENSMUSG00000027259.15	ENSMUST00000152164.1	protein_coding	chr2:121150072-121156339
chr2	121150042	121150154	-	ID_B1	SINE	B4	chr2	121150071	121150073	+	ENSMUST00000152164.1,ENSMUSG00000027259.15	Adal	ENSMUSG00000027259.15	ENSMUST00000152164.1	protein_coding	chr2:121150072-121156339
chr2	121218396	121218683	-	MTD	LTR	ERVL-MaLR	chr2	121218435	121218437	-	ENSMUST00000140582.1,ENSMUSG00000043909.16	Trp53bp1	ENSMUSG00000043909.16	ENSMUST00000140582.1	protein_coding	chr2:121211308-121218436
chr2	121387074	121387393	-	IAPLTR1a_Mm	LTR	ERVK	chr2	121387167	121387169	-	ENSMUST00000149219.1,ENSMUSG00000033498.14	Strc	ENSMUSG00000033498.14	ENSMUST00000149219.1	protein_coding	chr2:121376344-121387168
chr2	121444223	121444342	-	B1_Mus2	SINE	Alu	chr2	121444277	121444279	-	ENSMUST00000028679.10,ENSMUSG00000027246.12	Ell3	ENSMUSG00000027246.12	ENSMUST00000028679.10	protein_coding	chr2:121439010-121444278
chr2	121558475	121558568	+	CR1_Mam	LINE	CR1	chr2	121558556	121558558	-	ENSMUST00000153932.1,ENSMUSG00000027238.17	Frmd5	ENSMUSG00000027238.17	ENSMUST00000153932.1	protein_coding	chr2:121549048-121558557
chr2	121891676	121891728	+	ORR1D1	LTR	ERVL-MaLR	chr2	121891683	121891685	-	ENSMUST00000157142.1,ENSMUSG00000087767.1	Gm23983	ENSMUSG00000087767.1	ENSMUST00000157142.1	rRNA	chr2:121891571-121891684
chr2	122369162	122369218	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr2	122369161	122369163	-	ENSMUST00000125826.7,ENSMUSG00000033256.14	Shf	ENSMUSG00000033256.14	ENSMUST00000125826.7	protein_coding	chr2:122349128-122369162
chr2	122385491	122385640	-	U1	snRNA	snRNA	chr2	122385639	122385641	-	ENSMUST00000157881.1,ENSMUSG00000088506.1	Gm24409	ENSMUSG00000088506.1	ENSMUST00000157881.1	snRNA	chr2:122385489-122385640
chr2	122426320	122426668	+	MT2A	LTR	ERVL	chr2	122426476	122426478	+	ENSMUST00000110525.7,ENSMUSG00000027219.13	Slc28a2	ENSMUSG00000027219.13	ENSMUST00000110525.7	protein_coding	chr2:122426477-122461137
chr2	122426320	122426668	+	MT2A	LTR	ERVL	chr2	122426493	122426495	+	ENSMUST00000139850.1,ENSMUSG00000027219.13	Slc28a2	ENSMUSG00000027219.13	ENSMUST00000139850.1	protein_coding	chr2:122426494-122440969
chr2	122439741	122440056	+	MERVL_2A-int	LTR	ERVL	chr2	122439746	122439748	+	ENSMUST00000028652.11,ENSMUSG00000027219.13	Slc28a2	ENSMUSG00000027219.13	ENSMUST00000028652.11	protein_coding	chr2:122439747-122461130
chr2	122440688	122441078	+	MT2A	LTR	ERVL	chr2	122440762	122440764	+	ENSMUST00000110524.1,ENSMUSG00000027219.13	Slc28a2	ENSMUSG00000027219.13	ENSMUST00000110524.1	protein_coding	chr2:122440763-122461133
chr2	122484829	122485734	+	ERVL-int	LTR	ERVL	chr2	122484940	122484942	+	ENSMUST00000110521.2,ENSMUSG00000079071.2	Gm14085	ENSMUSG00000079071.2	ENSMUST00000110521.2	protein_coding	chr2:122484941-122528040
chr2	122485773	122486162	+	MT2A	LTR	ERVL	chr2	122485916	122485918	+	ENSMUST00000132215.1,ENSMUSG00000079071.2	Gm14085	ENSMUSG00000079071.2	ENSMUST00000132215.1	protein_coding	chr2:122485917-122488191
chr2	122598479	122598597	+	Lx8	LINE	L1	chr2	122598533	122598535	-	ENSMUST00000154598.7,ENSMUSG00000027199.14	Gatm	ENSMUSG00000027199.14	ENSMUST00000154598.7	protein_coding	chr2:122595489-122598534
chr2	122636979	122637028	-	ID4	SINE	ID	chr2	122636985	122636987	+	ENSMUST00000142767.7,ENSMUSG00000033213.16	AA467197	ENSMUSG00000033213.16	ENSMUST00000142767.7	protein_coding	chr2:122636986-122640729
chr2	122704040	122704528	+	MLT1F	LTR	ERVL-MaLR	chr2	122704233	122704235	+	ENSMUST00000153728.7,ENSMUSG00000087017.7	4930417H01Rik	ENSMUSG00000087017.7	ENSMUST00000153728.7	processed_transcript	chr2:122704234-122720597
chr2	122704040	122704528	+	MLT1F	LTR	ERVL-MaLR	chr2	122704235	122704237	+	ENSMUST00000155018.1,ENSMUSG00000087017.7	4930417H01Rik	ENSMUSG00000087017.7	ENSMUST00000155018.1	processed_transcript	chr2:122704236-122718229
chr2	123273730	123274642	+	MMERVK10C-int	LTR	ERVK	chr2	123273923	123273925	+	ENSMUST00000119363.1,ENSMUSG00000084372.1	Gm13988	ENSMUSG00000084372.1	ENSMUST00000119363.1	processed_pseudogene	chr2:123273924-123274211
chr2	125080249	125080419	-	RSINE1	SINE	B4	chr2	125080354	125080356	+	ENSMUST00000149963.1,ENSMUSG00000035183.14	Slc24a5	ENSMUSG00000035183.14	ENSMUST00000149963.1	protein_coding	chr2:125080355-125083079
chr2	125105008	125105115	+	U6	snRNA	snRNA	chr2	125105008	125105010	+	ENSMUST00000083917.1,ENSMUSG00000065851.1	Gm22352	ENSMUSG00000065851.1	ENSMUST00000083917.1	snRNA	chr2:125105009-125105115
chr2	125134130	125134510	-	ORR1D1	LTR	ERVL-MaLR	chr2	125134326	125134328	-	ENSMUST00000138875.1,ENSMUSG00000087056.1	Gm14004	ENSMUSG00000087056.1	ENSMUST00000138875.1	processed_transcript	chr2:125124356-125134327
chr2	125217385	125217681	-	ORR1E	LTR	ERVL-MaLR	chr2	125217511	125217513	-	ENSMUST00000123574.1,ENSMUSG00000086416.1	Gm14002	ENSMUSG00000086416.1	ENSMUST00000123574.1	antisense	chr2:125207529-125217512
chr2	125672964	125673141	+	C-rich	Low_complexity	Low_complexity	chr2	125673094	125673096	+	ENSMUST00000164756.3,ENSMUSG00000091337.3	Eid1	ENSMUSG00000091337.3	ENSMUST00000164756.3	protein_coding	chr2:125673095-125674785
chr2	125752194	125752309	-	MIRc	SINE	MIR	chr2	125752263	125752265	-	ENSMUST00000136450.1,ENSMUSG00000035093.16	Secisbp2l	ENSMUSG00000035093.16	ENSMUST00000136450.1	protein_coding	chr2:125750378-125752264
chr2	126109907	126110014	-	U6	snRNA	snRNA	chr2	126110013	126110015	-	ENSMUST00000083150.1,ENSMUSG00000065084.1	Gm26496	ENSMUSG00000065084.1	ENSMUST00000083150.1	snRNA	chr2:126109908-126110014
chr2	126213443	126218621	+	L1Md_F2	LINE	L1	chr2	126215099	126215101	+	ENSMUST00000164042.2,ENSMUSG00000090353.2	Gm17555	ENSMUSG00000090353.2	ENSMUST00000164042.2	protein_coding	chr2:126215100-126216212
chr2	126269341	126269493	-	ORR1E	LTR	ERVL-MaLR	chr2	126269362	126269364	-	ENSMUST00000158855.1,ENSMUSG00000089480.1	Gm24739	ENSMUSG00000089480.1	ENSMUST00000158855.1	misc_RNA	chr2:126269072-126269363
chr2	126499834	126499869	+	(CA)n	Simple_repeat	Simple_repeat	chr2	126499846	126499848	-	ENSMUST00000040128.11,ENSMUSG00000060131.11	Atp8b4	ENSMUSG00000060131.11	ENSMUST00000040128.11	protein_coding	chr2:126320973-126499847
chr2	126663167	126663291	+	B4A	SINE	B4	chr2	126663289	126663291	-	ENSMUST00000137335.1,ENSMUSG00000027361.15	Gabpb1	ENSMUSG00000027361.15	ENSMUST00000137335.1	protein_coding	chr2:126653692-126663290
chr2	126676207	126676361	-	B1_Mm	SINE	Alu	chr2	126676336	126676338	-	ENSMUST00000039978.12,ENSMUSG00000027361.15	Gabpb1	ENSMUSG00000027361.15	ENSMUST00000039978.12	protein_coding	chr2:126638636-126676337
chr2	126770326	126770540	+	C-rich	Low_complexity	Low_complexity	chr2	126770455	126770457	-	ENSMUST00000145194.1,ENSMUSG00000027364.14	Usp50	ENSMUSG00000027364.14	ENSMUST00000145194.1	protein_coding	chr2:126761050-126770456
chr2	126817604	126817820	+	B4A	SINE	B4	chr2	126817665	126817667	-	ENSMUST00000142334.1,ENSMUSG00000027365.14	Trpm7	ENSMUSG00000027365.14	ENSMUST00000142334.1	protein_coding	chr2:126813005-126817666
chr2	126902339	126902463	+	B3A	SINE	B2	chr2	126902384	126902386	-	ENSMUST00000183494.1,ENSMUSG00000098896.1	Mir3473g	ENSMUSG00000098896.1	ENSMUST00000183494.1	miRNA	chr2:126902250-126902385
chr2	127040541	127040687	-	B1_Mus2	SINE	Alu	chr2	127040560	127040562	+	ENSMUST00000175177.1,ENSMUSG00000092918.1	Gm24081	ENSMUSG00000092918.1	ENSMUST00000175177.1	miRNA	chr2:127040561-127040685
chr2	127116759	127116886	+	B1F	SINE	Alu	chr2	127116881	127116883	-	ENSMUST00000146142.1,ENSMUSG00000034906.15	Ncaph	ENSMUSG00000034906.15	ENSMUST00000146142.1	protein_coding	chr2:127108581-127116882
chr2	127245975	127246273	+	ORR1A4	LTR	ERVL-MaLR	chr2	127246045	127246047	-	ENSMUST00000143575.1,ENSMUSG00000003662.10	Ciao1	ENSMUSG00000003662.10	ENSMUST00000143575.1	protein_coding	chr2:127242869-127246046
chr2	127473036	127473308	-	7SK	RNA	RNA	chr2	127473307	127473309	-	ENSMUST00000122679.1,ENSMUSG00000084628.1	Gm22613	ENSMUSG00000084628.1	ENSMUST00000122679.1	misc_RNA	chr2:127473017-127473308
chr2	127590323	127590444	-	RMER15	LTR	ERVL	chr2	127590440	127590442	+	ENSMUST00000146131.1,ENSMUSG00000027374.12	Mrps5	ENSMUSG00000027374.12	ENSMUST00000146131.1	protein_coding	chr2:127590441-127595695
chr2	127691883	127692014	+	B1F	SINE	Alu	chr2	127691898	127691900	+	ENSMUST00000155688.1,ENSMUSG00000087162.1	Gm14244	ENSMUSG00000087162.1	ENSMUST00000155688.1	antisense	chr2:127691899-127700488
chr2	127891970	127892116	-	B1_Mus1	SINE	Alu	chr2	127891987	127891989	+	ENSMUST00000175462.1,ENSMUSG00000093203.1	Gm22411	ENSMUSG00000093203.1	ENSMUST00000175462.1	miRNA	chr2:127891988-127892113
chr2	128239618	128239920	+	RLTR51A_Mm	LTR	ERVK?	chr2	128239642	128239644	-	ENSMUST00000136025.1,ENSMUSG00000086879.1	Gm14012	ENSMUSG00000086879.1	ENSMUST00000136025.1	lincRNA	chr2:128237693-128239643
chr2	128630013	128630062	+	(T)n	Simple_repeat	Simple_repeat	chr2	128630034	128630036	-	ENSMUST00000154320.1,ENSMUSG00000014355.10	Anapc1	ENSMUSG00000014355.10	ENSMUST00000154320.1	protein_coding	chr2:128628543-128630035
chr2	128862966	128863322	-	RCHARR1	DNA	hAT-Charlie	chr2	128862980	128862982	+	ENSMUST00000110324.7,ENSMUSG00000027386.9	Fbln7	ENSMUSG00000027386.9	ENSMUST00000110324.7	protein_coding	chr2:128862981-128897034
chr2	128925668	128925805	-	B2_Mm2	SINE	B2	chr2	128925691	128925693	-	ENSMUST00000174978.1,ENSMUSG00000092719.1	Gm22859	ENSMUSG00000092719.1	ENSMUST00000174978.1	miRNA	chr2:128925571-128925692
chr2	128956877	128960339	+	L1Md_A	LINE	L1	chr2	128957860	128957862	-	ENSMUST00000156275.1,ENSMUSG00000087267.1	4933427J07Rik	ENSMUSG00000087267.1	ENSMUST00000156275.1	antisense	chr2:128955671-128957861
chr2	129065917	129065963	+	GC_rich	Low_complexity	Low_complexity	chr2	129065941	129065943	+	ENSMUST00000035812.13,ENSMUSG00000027394.13	Ttl	ENSMUSG00000027394.13	ENSMUST00000035812.13	protein_coding	chr2:129065942-129096283
chr2	129118641	129118734	+	PB1D9	SINE	Alu	chr2	129118653	129118655	+	ENSMUST00000144004.1,ENSMUSG00000027395.15	Polr1b	ENSMUSG00000027395.15	ENSMUST00000144004.1	protein_coding	chr2:129118654-129123138
chr2	129230477	129230630	-	RSINE1	SINE	B4	chr2	129230578	129230580	-	ENSMUST00000126080.1,ENSMUSG00000087528.1	9830144P21Rik	ENSMUSG00000087528.1	ENSMUST00000126080.1	processed_transcript	chr2:129224192-129230579
chr2	129246084	129246529	+	RLTR12C	LTR	ERVK	chr2	129246375	129246377	+	ENSMUST00000141964.1,ENSMUSG00000085485.1	Gm14024	ENSMUSG00000085485.1	ENSMUST00000141964.1	antisense	chr2:129246376-129268526
chr2	129593540	129593561	+	GC_rich	Low_complexity	Low_complexity	chr2	129593554	129593556	+	ENSMUST00000049262.13,ENSMUSG00000037902.18	Sirpa	ENSMUSG00000037902.18	ENSMUST00000049262.13	protein_coding	chr2:129593555-129632228
chr2	129948254	129948625	+	MMVL30-int	LTR	ERV1	chr2	129948567	129948569	+	ENSMUST00000187719.1,ENSMUSG00000100255.1	Gm28196	ENSMUSG00000100255.1	ENSMUST00000187719.1	lincRNA	chr2:129948568-129949207
chr2	130085789	130086050	+	Lx8b	LINE	L1	chr2	130086040	130086042	+	ENSMUST00000104160.1,ENSMUSG00000077348.1	Gm24665	ENSMUSG00000077348.1	ENSMUST00000104160.1	snoRNA	chr2:130086041-130086169
chr2	130111805	130112586	-	HAL1	LINE	L1	chr2	130112415	130112417	+	ENSMUST00000140947.7,ENSMUSG00000027403.12	Tgm6	ENSMUSG00000027403.12	ENSMUST00000140947.7	protein_coding	chr2:130112416-130154232
chr2	130195031	130195212	+	Lx8	LINE	L1	chr2	130195193	130195195	+	ENSMUST00000077988.7,ENSMUSG00000060332.9	Tmc2	ENSMUSG00000060332.9	ENSMUST00000077988.7	protein_coding	chr2:130195194-130264445
chr2	130274817	130274840	+	GC_rich	Low_complexity	Low_complexity	chr2	130274830	130274832	+	ENSMUST00000138163.2,ENSMUSG00000027405.16	Nop56	ENSMUSG00000027405.16	ENSMUST00000138163.2	protein_coding	chr2:130274831-130275696
chr2	130531676	130531749	+	(CATA)n	Simple_repeat	Simple_repeat	chr2	130531743	130531745	-	ENSMUST00000103816.1,ENSMUSG00000077004.1	Gm23876	ENSMUSG00000077004.1	ENSMUST00000103816.1	miRNA	chr2:130531678-130531744
chr2	130541618	130541843	+	B3	SINE	B2	chr2	130541624	130541626	+	ENSMUST00000229567.1,ENSMUSG00000027303.18	Ptpra	ENSMUSG00000027303.18	ENSMUST00000229567.1	protein_coding	chr2:130541625-130542504
chr2	130688504	130688675	+	B2_Mm2	SINE	B2	chr2	130688564	130688566	-	ENSMUST00000144945.7,ENSMUSG00000074796.10	Slc4a11	ENSMUSG00000074796.10	ENSMUST00000144945.7	protein_coding	chr2:130684113-130688565
chr2	130705463	130705696	-	7SK	RNA	RNA	chr2	130705695	130705697	-	ENSMUST00000122745.1,ENSMUSG00000084694.1	Gm24893	ENSMUSG00000084694.1	ENSMUST00000122745.1	misc_RNA	chr2:130705328-130705696
chr2	130705691	130705774	-	B2_Mm2	SINE	B2	chr2	130705695	130705697	-	ENSMUST00000122745.1,ENSMUSG00000084694.1	Gm24893	ENSMUSG00000084694.1	ENSMUST00000122745.1	misc_RNA	chr2:130705328-130705696
chr2	130757298	130757608	-	ORR1A2	LTR	ERVL-MaLR	chr2	130757450	130757452	-	ENSMUST00000133132.1,ENSMUSG00000027309.18	4930402H24Rik	ENSMUSG00000027309.18	ENSMUST00000133132.1	protein_coding	chr2:130739000-130757451
chr2	130840139	130840201	+	GC_rich	Low_complexity	Low_complexity	chr2	130840144	130840146	-	ENSMUST00000110243.7,ENSMUSG00000027309.18	4930402H24Rik	ENSMUSG00000027309.18	ENSMUST00000110243.7	protein_coding	chr2:130805676-130840145
chr2	130996050	130996252	-	B3	SINE	B2	chr2	130996176	130996178	+	ENSMUST00000151364.1,ENSMUSG00000027312.14	Atrn	ENSMUSG00000027312.14	ENSMUST00000151364.1	protein_coding	chr2:130996177-131005443
chr2	131133495	131133626	-	ID_B1	SINE	B4	chr2	131133496	131133498	+	ENSMUST00000110225.1,ENSMUSG00000079039.1	Gm11037	ENSMUSG00000079039.1	ENSMUST00000110225.1	protein_coding	chr2:131133497-131134215
chr2	131180000	131180122	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr2	131180066	131180068	-	ENSMUST00000089510.4,ENSMUSG00000068267.5	Cenpb	ENSMUSG00000068267.5	ENSMUST00000089510.4	protein_coding	chr2:131175182-131180067
chr2	131210560	131210713	-	ID_B1	SINE	B4	chr2	131210603	131210605	+	ENSMUST00000110206.1,ENSMUSG00000068264.11	Ap5s1	ENSMUSG00000068264.11	ENSMUST00000110206.1	protein_coding	chr2:131210604-131212864
chr2	131328797	131329212	-	MTD	LTR	ERVL-MaLR	chr2	131328987	131328989	-	ENSMUST00000110194.7,ENSMUSG00000048911.15	Rnf24	ENSMUSG00000048911.15	ENSMUST00000110194.7	protein_coding	chr2:131298067-131328988
chr2	131352854	131352903	+	GC_rich	Low_complexity	Low_complexity	chr2	131352880	131352882	-	ENSMUST00000059372.10,ENSMUSG00000048911.15	Rnf24	ENSMUSG00000048911.15	ENSMUST00000059372.10	protein_coding	chr2:131298064-131352881
chr2	131352854	131352903	+	GC_rich	Low_complexity	Low_complexity	chr2	131352861	131352863	-	ENSMUST00000183902.1,ENSMUSG00000048911.15	Rnf24	ENSMUSG00000048911.15	ENSMUST00000183902.1	protein_coding	chr2:131302646-131352862
chr2	131352854	131352903	+	GC_rich	Low_complexity	Low_complexity	chr2	131352891	131352893	-	ENSMUST00000142982.1,ENSMUSG00000048911.15	Rnf24	ENSMUSG00000048911.15	ENSMUST00000142982.1	protein_coding	chr2:131312557-131352892
chr2	131413940	131414224	-	L1MD2	LINE	L1	chr2	131413961	131413963	-	ENSMUST00000158488.1,ENSMUSG00000089113.1	Gm22902	ENSMUSG00000089113.1	ENSMUST00000158488.1	ribozyme	chr2:131413661-131413962
chr2	131846216	131846415	-	B4A	SINE	B4	chr2	131846394	131846396	+	ENSMUST00000121700.1,ENSMUSG00000083469.1	Gm14281	ENSMUSG00000083469.1	ENSMUST00000121700.1	processed_pseudogene	chr2:131846395-131847688
chr2	132029996	132030052	+	C-rich	Low_complexity	Low_complexity	chr2	132030000	132030002	-	ENSMUST00000028814.14,ENSMUSG00000027339.15	Rassf2	ENSMUSG00000027339.15	ENSMUST00000028814.14	protein_coding	chr2:131989415-132030001
chr2	132285829	132286418	+	RLTR17	LTR	ERVK	chr2	132285938	132285940	+	ENSMUST00000089461.10,ENSMUSG00000058793.14	Cds2	ENSMUSG00000058793.14	ENSMUST00000089461.10	protein_coding	chr2:132285939-132312050
chr2	132424721	132424756	+	B3	SINE	B2	chr2	132424740	132424742	+	ENSMUST00000124095.1,ENSMUSG00000027345.6	4921508D12Rik	ENSMUSG00000027345.6	ENSMUST00000124095.1	lincRNA	chr2:132424741-132452499
chr2	132500994	132501166	-	B3	SINE	B2	chr2	132501147	132501149	-	ENSMUST00000134264.1,ENSMUSG00000086250.1	Gm14095	ENSMUSG00000086250.1	ENSMUST00000134264.1	lincRNA	chr2:132483212-132501148
chr2	132587540	132588045	-	MT2B	LTR	ERVL	chr2	132587728	132587730	-	ENSMUST00000110135.2,ENSMUSG00000027346.15	Gpcpd1	ENSMUSG00000027346.15	ENSMUST00000110135.2	protein_coding	chr2:132553957-132587729
chr2	132598174	132598254	+	ID4	SINE	ID	chr2	132598194	132598196	+	ENSMUST00000143964.7,ENSMUSG00000074783.10	AU019990	ENSMUSG00000074783.10	ENSMUST00000143964.7	lincRNA	chr2:132598195-132650156
chr2	132598174	132598254	+	ID4	SINE	ID	chr2	132598194	132598196	+	ENSMUST00000153028.7,ENSMUSG00000074783.10	AU019990	ENSMUSG00000074783.10	ENSMUST00000153028.7	lincRNA	chr2:132598195-132653068
chr2	132645642	132646135	+	MT2_Mm	LTR	ERVL	chr2	132645880	132645882	+	ENSMUST00000138751.1,ENSMUSG00000074783.10	AU019990	ENSMUSG00000074783.10	ENSMUST00000138751.1	lincRNA	chr2:132645881-132652999
chr2	132673975	132674165	-	B2_Mm2	SINE	B2	chr2	132673988	132673990	-	ENSMUST00000117769.1,ENSMUSG00000084089.1	Gm14099	ENSMUSG00000084089.1	ENSMUST00000117769.1	processed_pseudogene	chr2:132673385-132673989
chr2	132698119	132698197	+	IMPB_01	Satellite	Satellite	chr2	132698118	132698120	+	ENSMUST00000141460.1,ENSMUSG00000044991.10	Shld1	ENSMUSG00000044991.10	ENSMUST00000141460.1	protein_coding	chr2:132698119-132750582
chr2	132717101	132717207	+	U6	snRNA	snRNA	chr2	132717105	132717107	+	ENSMUST00000082479.1,ENSMUSG00000064413.1	Gm22245	ENSMUSG00000064413.1	ENSMUST00000082479.1	snRNA	chr2:132717106-132717208
chr2	133007621	133008497	-	L1Md_F2	LINE	L1	chr2	133008486	133008488	+	ENSMUST00000083116.1,ENSMUSG00000065050.1	Gm25704	ENSMUSG00000065050.1	ENSMUST00000083116.1	snRNA	chr2:133008487-133008654
chr2	133199506	133199653	-	ORR1D2	LTR	ERVL-MaLR	chr2	133199610	133199612	+	ENSMUST00000117717.1,ENSMUSG00000083689.1	Gm14094	ENSMUSG00000083689.1	ENSMUST00000117717.1	processed_pseudogene	chr2:133199611-133200220
chr2	133330923	133330982	+	U6	snRNA	snRNA	chr2	133330923	133330925	+	ENSMUST00000184570.1,ENSMUSG00000098578.1	Gm27449	ENSMUSG00000098578.1	ENSMUST00000184570.1	snRNA	chr2:133330924-133330982
chr2	133564657	133564814	-	MER5A1	DNA	hAT-Charlie	chr2	133564707	133564709	+	ENSMUST00000175597.1,ENSMUSG00000093338.1	Mir3090	ENSMUSG00000093338.1	ENSMUST00000175597.1	miRNA	chr2:133564708-133564794
chr2	133584314	133584421	-	U6	snRNA	snRNA	chr2	133584420	133584422	-	ENSMUST00000083049.1,ENSMUSG00000064983.1	Gm25258	ENSMUSG00000064983.1	ENSMUST00000083049.1	snRNA	chr2:133584315-133584421
chr2	135248953	135249349	+	MTA_Mm	LTR	ERVL-MaLR	chr2	135249172	135249174	+	ENSMUST00000201524.1,ENSMUSG00000051177.16	Plcb1	ENSMUSG00000051177.16	ENSMUST00000201524.1	protein_coding	chr2:135249173-135255513
chr2	135659407	135659570	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	135659553	135659555	+	ENSMUST00000139480.1,ENSMUSG00000039943.16	Plcb4	ENSMUSG00000039943.16	ENSMUST00000139480.1	protein_coding	chr2:135659554-135742838
chr2	135659597	135659652	+	(CA)n	Simple_repeat	Simple_repeat	chr2	135659614	135659616	+	ENSMUST00000146018.7,ENSMUSG00000039943.16	Plcb4	ENSMUSG00000039943.16	ENSMUST00000146018.7	protein_coding	chr2:135659615-135877821
chr2	135741790	135742110	+	L2	LINE	L2	chr2	135741829	135741831	+	ENSMUST00000137969.7,ENSMUSG00000039943.16	Plcb4	ENSMUSG00000039943.16	ENSMUST00000137969.7	protein_coding	chr2:135741830-135910484
chr2	135741790	135742110	+	L2	LINE	L2	chr2	135741829	135741831	+	ENSMUST00000184371.7,ENSMUSG00000039943.16	Plcb4	ENSMUSG00000039943.16	ENSMUST00000184371.7	protein_coding	chr2:135741830-136013269
chr2	135741790	135742110	+	L2	LINE	L2	chr2	135741829	135741831	+	ENSMUST00000110109.7,ENSMUSG00000039943.16	Plcb4	ENSMUSG00000039943.16	ENSMUST00000110109.7	protein_coding	chr2:135741830-136014593
chr2	136026150	136026251	-	U6	snRNA	snRNA	chr2	136026250	136026252	-	ENSMUST00000082510.1,ENSMUSG00000064444.1	Gm26227	ENSMUSG00000064444.1	ENSMUST00000082510.1	snRNA	chr2:136026151-136026251
chr2	136136851	136137068	-	MTD	LTR	ERVL-MaLR	chr2	136137005	136137007	+	ENSMUST00000137802.1,ENSMUSG00000085383.1	Gm14218	ENSMUSG00000085383.1	ENSMUST00000137802.1	antisense	chr2:136137006-136140161
chr2	136552812	136553140	+	RMER17B2	LTR	ERVK	chr2	136552918	136552920	+	ENSMUST00000131970.1,ENSMUSG00000074771.10	Ankef1	ENSMUSG00000074771.10	ENSMUST00000131970.1	protein_coding	chr2:136552919-136553714
chr2	136552812	136553140	+	RMER17B2	LTR	ERVK	chr2	136552933	136552935	+	ENSMUST00000138967.1,ENSMUSG00000074771.10	Ankef1	ENSMUSG00000074771.10	ENSMUST00000138967.1	protein_coding	chr2:136552934-136555888
chr2	139678167	139678195	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	139678177	139678179	+	ENSMUST00000184404.7,ENSMUSG00000074766.10	Ism1	ENSMUSG00000074766.10	ENSMUST00000184404.7	protein_coding	chr2:139678178-139758580
chr2	139678167	139678195	+	(TCC)n	Simple_repeat	Simple_repeat	chr2	139678177	139678179	+	ENSMUST00000099307.3,ENSMUSG00000074766.10	Ism1	ENSMUSG00000074766.10	ENSMUST00000099307.3	protein_coding	chr2:139678178-139758581
chr2	140151910	140152057	+	B1_Mus1	SINE	Alu	chr2	140152042	140152044	+	ENSMUST00000104994.2,ENSMUSG00000078197.2	Gm17374	ENSMUSG00000078197.2	ENSMUST00000104994.2	protein_coding	chr2:140152043-140153532
chr2	140155193	140155333	+	B1_Mur2	SINE	Alu	chr2	140155304	140155306	-	ENSMUST00000153769.1,ENSMUSG00000045624.15	Esf1	ENSMUSG00000045624.15	ENSMUST00000153769.1	protein_coding	chr2:140148810-140155305
chr2	140296764	140297350	-	RLTR26_Mus	LTR	ERVK	chr2	140296827	140296829	-	ENSMUST00000134475.1,ENSMUSG00000074764.11	Sel1l2	ENSMUSG00000074764.11	ENSMUST00000134475.1	protein_coding	chr2:140293848-140296828
chr2	140440540	140440647	-	U6	snRNA	snRNA	chr2	140440646	140440648	-	ENSMUST00000083835.1,ENSMUSG00000065769.1	Gm23846	ENSMUSG00000065769.1	ENSMUST00000083835.1	snRNA	chr2:140440541-140440647
chr2	141640489	141640596	+	U6	snRNA	snRNA	chr2	141640489	141640491	+	ENSMUST00000083413.1,ENSMUSG00000065347.1	Gm25583	ENSMUSG00000065347.1	ENSMUST00000083413.1	snRNA	chr2:141640490-141640596
chr2	142648716	142648763	+	(TG)n	Simple_repeat	Simple_repeat	chr2	142648762	142648764	-	ENSMUST00000142078.1,ENSMUSG00000038844.10	Kif16b	ENSMUSG00000038844.10	ENSMUST00000142078.1	protein_coding	chr2:142618711-142648763
chr2	143545954	143545994	+	GC_rich	Low_complexity	Low_complexity	chr2	143545976	143545978	-	ENSMUST00000156780.1,ENSMUSG00000086171.7	Pcsk2os1	ENSMUSG00000086171.7	ENSMUST00000156780.1	antisense	chr2:143537970-143545977
chr2	143788942	143789307	+	MTD	LTR	ERVL-MaLR	chr2	143789185	143789187	-	ENSMUST00000153878.7,ENSMUSG00000087115.7	Pcsk2os2	ENSMUSG00000087115.7	ENSMUST00000153878.7	antisense	chr2:143747583-143789186
chr2	143877824	143877961	+	(GAAA)n	Simple_repeat	Simple_repeat	chr2	143877948	143877950	+	ENSMUST00000117846.1,ENSMUSG00000081293.1	Gm11673	ENSMUSG00000081293.1	ENSMUST00000117846.1	processed_pseudogene	chr2:143877949-143878279
chr2	144174279	144174428	+	B1F2	SINE	Alu	chr2	144174363	144174365	-	ENSMUST00000210200.1,ENSMUSG00000074758.10	Gm5535	ENSMUSG00000074758.10	ENSMUST00000210200.1	lincRNA	chr2:144168473-144174364
chr2	144179019	144179413	-	MLT1F2	LTR	ERVL-MaLR	chr2	144179085	144179087	-	ENSMUST00000166982.2,ENSMUSG00000074758.10	Gm5535	ENSMUSG00000074758.10	ENSMUST00000166982.2	lincRNA	chr2:144174315-144179086
chr2	144243233	144243384	+	B1_Mus1	SINE	Alu	chr2	144243240	144243242	+	ENSMUST00000146746.1,ENSMUSG00000085127.1	4930444E06Rik	ENSMUSG00000085127.1	ENSMUST00000146746.1	antisense	chr2:144243241-144244849
chr2	144368986	144369029	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	144368987	144368989	+	ENSMUST00000171261.1,ENSMUSG00000027425.18	Kat14	ENSMUSG00000027425.18	ENSMUST00000171261.1	protein_coding	chr2:144368988-144373393
chr2	144368986	144369029	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	144368998	144369000	+	ENSMUST00000147747.7,ENSMUSG00000027425.18	Kat14	ENSMUSG00000027425.18	ENSMUST00000147747.7	protein_coding	chr2:144368999-144407676
chr2	144368986	144369029	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	144368995	144368997	+	ENSMUST00000183618.2,ENSMUSG00000098387.2	Pet117	ENSMUSG00000098387.2	ENSMUST00000183618.2	protein_coding	chr2:144368996-144373721
chr2	144388898	144389048	-	MIR	SINE	MIR	chr2	144388974	144388976	+	ENSMUST00000143318.1,ENSMUSG00000027425.18	Kat14	ENSMUSG00000027425.18	ENSMUST00000143318.1	protein_coding	chr2:144388975-144393467
chr2	144388898	144389048	-	MIR	SINE	MIR	chr2	144388988	144388990	+	ENSMUST00000137611.1,ENSMUSG00000027425.18	Kat14	ENSMUSG00000027425.18	ENSMUST00000137611.1	protein_coding	chr2:144388989-144393448
chr2	144526533	144526673	-	B1_Mur3	SINE	Alu	chr2	144526647	144526649	-	ENSMUST00000150816.1,ENSMUSG00000037259.15	Dzank1	ENSMUSG00000037259.15	ENSMUST00000150816.1	protein_coding	chr2:144522463-144526648
chr2	144577038	144577230	+	B2_Mm1a	SINE	B2	chr2	144577122	144577124	+	ENSMUST00000146487.1,ENSMUSG00000027429.16	Sec23b	ENSMUSG00000027429.16	ENSMUST00000146487.1	protein_coding	chr2:144577123-144581115
chr2	144618224	144618238	-	RLTR17B_Mm	LTR	ERVK	chr2	144618232	144618234	-	ENSMUST00000175092.1,ENSMUSG00000092833.1	Gm24823	ENSMUSG00000092833.1	ENSMUST00000175092.1	miRNA	chr2:144618143-144618233
chr2	144756187	144756379	+	Lx5	LINE	L1	chr2	144756328	144756330	+	ENSMUST00000117385.1,ENSMUSG00000084306.1	Gm11743	ENSMUSG00000084306.1	ENSMUST00000117385.1	processed_pseudogene	chr2:144756329-144758582
chr2	145236290	145242674	-	L1Md_A	LINE	L1	chr2	145242610	145242612	+	ENSMUST00000137908.1,ENSMUSG00000063873.10	Slc24a3	ENSMUSG00000063873.10	ENSMUST00000137908.1	protein_coding	chr2:145242611-145642166
chr2	145352843	145352922	+	5S	rRNA	rRNA	chr2	145352842	145352844	+	ENSMUST00000158086.1,ENSMUSG00000088711.1	Gm22731	ENSMUSG00000088711.1	ENSMUST00000158086.1	rRNA	chr2:145352843-145352936
chr2	145554975	145555140	-	MLT1H	LTR	ERVL-MaLR	chr2	145554981	145554983	-	ENSMUST00000136794.1,ENSMUSG00000074753.5	Gm14092	ENSMUSG00000074753.5	ENSMUST00000136794.1	antisense	chr2:145550652-145554982
chr2	145606749	145606841	+	GA-rich	Low_complexity	Low_complexity	chr2	145606817	145606819	+	ENSMUST00000131123.1,ENSMUSG00000063873.10	Slc24a3	ENSMUSG00000063873.10	ENSMUST00000131123.1	protein_coding	chr2:145606818-145614160
chr2	145606777	145606838	+	(ATG)n	Simple_repeat	Simple_repeat	chr2	145606817	145606819	+	ENSMUST00000131123.1,ENSMUSG00000063873.10	Slc24a3	ENSMUSG00000063873.10	ENSMUST00000131123.1	protein_coding	chr2:145606818-145614160
chr2	145878217	145878318	+	CT-rich	Low_complexity	Low_complexity	chr2	145878285	145878287	+	ENSMUST00000175017.1,ENSMUSG00000092758.1	Gm25026	ENSMUSG00000092758.1	ENSMUST00000175017.1	miRNA	chr2:145878286-145878473
chr2	146041378	146041687	-	ORR1C1	LTR	ERVL-MaLR	chr2	146041493	146041495	+	ENSMUST00000155214.7,ENSMUSG00000037143.17	Cfap61	ENSMUSG00000037143.17	ENSMUST00000155214.7	protein_coding	chr2:146041494-146095688
chr2	146152325	146152400	-	MTE2a	LTR	ERVL-MaLR	chr2	146152343	146152345	+	ENSMUST00000143896.1,ENSMUSG00000037143.17	Cfap61	ENSMUSG00000037143.17	ENSMUST00000143896.1	protein_coding	chr2:146152344-146214960
chr2	146214056	146214481	+	MTB	LTR	ERVL-MaLR	chr2	146214264	146214266	+	ENSMUST00000146891.1,ENSMUSG00000037143.17	Cfap61	ENSMUSG00000037143.17	ENSMUST00000146891.1	protein_coding	chr2:146214265-146215035
chr2	146542421	146543287	-	Lx8	LINE	L1	chr2	146542930	146542932	+	ENSMUST00000147212.1,ENSMUSG00000085796.1	4933406D12Rik	ENSMUSG00000085796.1	ENSMUST00000147212.1	lincRNA	chr2:146542931-146546108
chr2	147042454	147042586	-	B1_Mur2	SINE	Alu	chr2	147042545	147042547	+	ENSMUST00000136136.1,ENSMUSG00000027433.5	Xrn2	ENSMUSG00000027433.5	ENSMUST00000136136.1	protein_coding	chr2:147042546-147047822
chr2	147643171	147643533	-	L1M4b	LINE	L1	chr2	147643176	147643178	-	ENSMUST00000117774.1,ENSMUSG00000080844.1	Gm14107	ENSMUSG00000080844.1	ENSMUST00000117774.1	processed_pseudogene	chr2:147642848-147643177
chr2	147874771	147874878	-	U6	snRNA	snRNA	chr2	147874877	147874879	-	ENSMUST00000083857.1,ENSMUSG00000065791.1	Gm25516	ENSMUSG00000065791.1	ENSMUST00000083857.1	snRNA	chr2:147874772-147874878
chr2	148053095	148053168	-	MER5A1	DNA	hAT-Charlie	chr2	148053123	148053125	+	ENSMUST00000183823.1,ENSMUSG00000099304.1	Gm27420	ENSMUSG00000099304.1	ENSMUST00000183823.1	miRNA	chr2:148053124-148053202
chr2	149017161	149017377	+	RLTR10B	LTR	ERVK	chr2	149017236	149017238	-	ENSMUST00000099266.2,ENSMUSG00000074739.2	Gm10750	ENSMUSG00000074739.2	ENSMUST00000099266.2	protein_coding	chr2:149015732-149017237
chr2	150189781	150191828	+	MurSatRep1	Unknown	Unknown	chr2	150190392	150190394	+	ENSMUST00000109929.2,ENSMUSG00000079009.8	Gm14139	ENSMUSG00000079009.8	ENSMUST00000109929.2	protein_coding	chr2:150190393-150193152
chr2	150323363	150325142	+	MurSatRep1	Unknown	Unknown	chr2	150323701	150323703	+	ENSMUST00000133235.2,ENSMUSG00000095315.1	Gm10130	ENSMUSG00000095315.1	ENSMUST00000133235.2	protein_coding	chr2:150323702-150363071
chr2	150409818	150411969	-	MurSatRep1	Unknown	Unknown	chr2	150411336	150411338	-	ENSMUST00000185796.1,ENSMUSG00000068130.11	Zfp442	ENSMUSG00000068130.11	ENSMUST00000185796.1	protein_coding	chr2:150407977-150411337
chr2	150668251	150668281	+	GC_rich	Low_complexity	Low_complexity	chr2	150668257	150668259	-	ENSMUST00000028944.3,ENSMUSG00000027452.11	Acss1	ENSMUSG00000027452.11	ENSMUST00000028944.3	protein_coding	chr2:150618105-150668258
chr2	150706740	150707044	-	LTRIS2	LTR	ERV1	chr2	150706875	150706877	-	ENSMUST00000147128.1,ENSMUSG00000086563.1	Platr15	ENSMUSG00000086563.1	ENSMUST00000147128.1	lincRNA	chr2:150704536-150706876
chr2	150953888	150953925	+	(TAAA)n	Simple_repeat	Simple_repeat	chr2	150953923	150953925	-	ENSMUST00000147293.1,ENSMUSG00000068115.13	Ninl	ENSMUSG00000068115.13	ENSMUST00000147293.1	protein_coding	chr2:150952491-150953924
chr2	151059802	151059955	+	L1MD	LINE	L1	chr2	151059954	151059956	+	ENSMUST00000157819.1,ENSMUSG00000088444.1	Gm22187	ENSMUSG00000088444.1	ENSMUST00000157819.1	snoRNA	chr2:151059955-151060083
chr2	151204967	151205320	+	IAPLTR1_Mm	LTR	ERVK	chr2	151205194	151205196	+	ENSMUST00000123048.1,ENSMUSG00000067352.6	Gm14149	ENSMUSG00000067352.6	ENSMUST00000123048.1	lincRNA	chr2:151205195-151231614
chr2	151372497	151372619	-	L1M	LINE	L1	chr2	151372497	151372499	-	ENSMUST00000158316.1,ENSMUSG00000088941.1	Gm23261	ENSMUSG00000088941.1	ENSMUST00000158316.1	snoRNA	chr2:151372363-151372498
chr2	151503636	151503785	-	B1_Mur3	SINE	Alu	chr2	151503736	151503738	+	ENSMUST00000134081.1,ENSMUSG00000027455.16	Nsfl1c	ENSMUSG00000027455.16	ENSMUST00000134081.1	protein_coding	chr2:151503737-151509692
chr2	151508948	151509184	+	URR1B	DNA	hAT-Charlie	chr2	151509099	151509101	+	ENSMUST00000139229.1,ENSMUSG00000027455.16	Nsfl1c	ENSMUSG00000027455.16	ENSMUST00000139229.1	protein_coding	chr2:151509100-151511262
chr2	151542678	151542707	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	151542695	151542697	+	ENSMUST00000144171.1,ENSMUSG00000032966.14	Fkbp1a	ENSMUSG00000032966.14	ENSMUST00000144171.1	protein_coding	chr2:151542696-151557475
chr2	151632561	151632609	+	G-rich	Low_complexity	Low_complexity	chr2	151632572	151632574	-	ENSMUST00000028951.13,ENSMUSG00000027457.15	Snph	ENSMUSG00000027457.15	ENSMUST00000028951.13	protein_coding	chr2:151590549-151632573
chr2	151632561	151632609	+	G-rich	Low_complexity	Low_complexity	chr2	151632566	151632568	-	ENSMUST00000109875.7,ENSMUSG00000027457.15	Snph	ENSMUSG00000027457.15	ENSMUST00000109875.7	protein_coding	chr2:151590564-151632567
chr2	151632561	151632609	+	G-rich	Low_complexity	Low_complexity	chr2	151632592	151632594	-	ENSMUST00000109877.9,ENSMUSG00000027457.15	Snph	ENSMUSG00000027457.15	ENSMUST00000109877.9	protein_coding	chr2:151591725-151632593
chr2	151632561	151632609	+	G-rich	Low_complexity	Low_complexity	chr2	151632560	151632562	-	ENSMUST00000148755.7,ENSMUSG00000027457.15	Snph	ENSMUSG00000027457.15	ENSMUST00000148755.7	protein_coding	chr2:151600996-151632561
chr2	151632561	151632609	+	G-rich	Low_complexity	Low_complexity	chr2	151632572	151632574	-	ENSMUST00000141692.7,ENSMUSG00000027457.15	Snph	ENSMUSG00000027457.15	ENSMUST00000141692.7	protein_coding	chr2:151601204-151632573
chr2	151632561	151632609	+	G-rich	Low_complexity	Low_complexity	chr2	151632566	151632568	-	ENSMUST00000143367.1,ENSMUSG00000027457.15	Snph	ENSMUSG00000027457.15	ENSMUST00000143367.1	protein_coding	chr2:151621258-151632567
chr2	152081520	152081597	+	(TC)n	Simple_repeat	Simple_repeat	chr2	152081528	152081530	+	ENSMUST00000064061.3,ENSMUSG00000060257.2	Scrt2	ENSMUSG00000060257.2	ENSMUST00000064061.3	protein_coding	chr2:152081529-152095802
chr2	152322930	152323063	-	ID_B1	SINE	B4	chr2	152322996	152322998	-	ENSMUST00000130165.7,ENSMUSG00000027466.15	Rbck1	ENSMUSG00000027466.15	ENSMUST00000130165.7	protein_coding	chr2:152316334-152322997
chr2	152322978	152323073	+	YREP_Mm	Unknown	Unknown	chr2	152322996	152322998	-	ENSMUST00000130165.7,ENSMUSG00000027466.15	Rbck1	ENSMUSG00000027466.15	ENSMUST00000130165.7	protein_coding	chr2:152316334-152322997
chr2	152327555	152327759	-	B3	SINE	B2	chr2	152327756	152327758	-	ENSMUST00000131889.7,ENSMUSG00000027466.15	Rbck1	ENSMUSG00000027466.15	ENSMUST00000131889.7	protein_coding	chr2:152324540-152327757
chr2	152374732	152374882	-	RSINE1	SINE	B4	chr2	152374747	152374749	+	ENSMUST00000089083.2,ENSMUSG00000068062.3	Gm14164	ENSMUSG00000068062.3	ENSMUST00000089083.2	processed_transcript	chr2:152374748-152375149
chr2	152398012	152398049	+	GC_rich	Low_complexity	Low_complexity	chr2	152398045	152398047	-	ENSMUST00000063332.8,ENSMUSG00000051817.8	Sox12	ENSMUSG00000051817.8	ENSMUST00000063332.8	protein_coding	chr2:152393614-152398046
chr2	152415226	152415601	-	RLTR53_Mm	LTR	ERVK	chr2	152415586	152415588	+	ENSMUST00000039961.11,ENSMUSG00000032680.11	6820408C15Rik	ENSMUSG00000032680.11	ENSMUST00000039961.11	protein_coding	chr2:152415587-152444330
chr2	152416953	152417469	+	RLTR25A	LTR	ERVK	chr2	152417261	152417263	+	ENSMUST00000157514.2,ENSMUSG00000088139.2	Gm27343	ENSMUSG00000088139.2	ENSMUST00000157514.2	snRNA	chr2:152417262-152417324
chr2	152626909	152626969	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr2	152626950	152626952	+	ENSMUST00000000369.3,ENSMUSG00000000359.3	Rem1	ENSMUSG00000000359.3	ENSMUST00000000369.3	protein_coding	chr2:152626951-152635194
chr2	152626909	152626969	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr2	152626952	152626954	+	ENSMUST00000150913.1,ENSMUSG00000000359.3	Rem1	ENSMUSG00000000359.3	ENSMUST00000150913.1	protein_coding	chr2:152626953-152628303
chr2	152632887	152633048	-	RSINE1	SINE	B4	chr2	152632966	152632968	+	ENSMUST00000139370.1,ENSMUSG00000000359.3	Rem1	ENSMUSG00000000359.3	ENSMUST00000139370.1	protein_coding	chr2:152632967-152635198
chr2	152772560	152772910	-	MTA_Mm	LTR	ERVL-MaLR	chr2	152772888	152772890	-	ENSMUST00000175565.1,ENSMUSG00000093306.1	Gm23802	ENSMUSG00000093306.1	ENSMUST00000175565.1	miRNA	chr2:152772788-152772889
chr2	152864949	152865082	-	B1_Mur1	SINE	Alu	chr2	152865066	152865068	+	ENSMUST00000175928.1,ENSMUSG00000093746.1	Mir5622	ENSMUSG00000093746.1	ENSMUST00000175928.1	miRNA	chr2:152865067-152865126
chr2	152951543	152951587	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	152951581	152951583	-	ENSMUST00000037715.6,ENSMUSG00000042662.16	Dusp15	ENSMUSG00000042662.16	ENSMUST00000037715.6	protein_coding	chr2:152944933-152951582
chr2	153031843	153031865	+	GC_rich	Low_complexity	Low_complexity	chr2	153031851	153031853	+	ENSMUST00000037235.6,ENSMUSG00000042631.7	Xkr7	ENSMUSG00000042631.7	ENSMUST00000037235.6	protein_coding	chr2:153031852-153055775
chr2	153154926	153155015	-	MLT1A1	LTR	ERVL-MaLR	chr2	153155012	153155014	+	ENSMUST00000158874.1,ENSMUSG00000089499.1	Gm25643	ENSMUSG00000089499.1	ENSMUST00000158874.1	snRNA	chr2:153155013-153155115
chr2	153257442	153257490	+	(TGGA)n	Simple_repeat	Simple_repeat	chr2	153257481	153257483	+	ENSMUST00000123487.1,ENSMUSG00000046020.13	Pofut1	ENSMUSG00000046020.13	ENSMUST00000123487.1	protein_coding	chr2:153257482-153267286
chr2	153345841	153345880	+	(CA)n	Simple_repeat	Simple_repeat	chr2	153345844	153345846	+	ENSMUST00000109790.1,ENSMUSG00000042548.14	Asxl1	ENSMUSG00000042548.14	ENSMUST00000109790.1	protein_coding	chr2:153345845-153404007
chr2	153492498	153492554	+	GC_rich	Low_complexity	Low_complexity	chr2	153492516	153492518	-	ENSMUST00000129385.7,ENSMUSG00000061411.12	Nol4l	ENSMUSG00000061411.12	ENSMUST00000129385.7	protein_coding	chr2:153459746-153492517
chr2	153529959	153529998	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	153529970	153529972	-	ENSMUST00000035346.13,ENSMUSG00000061411.12	Nol4l	ENSMUSG00000061411.12	ENSMUST00000035346.13	protein_coding	chr2:153407462-153529971
chr2	153942220	153942408	+	(TGG)n	Simple_repeat	Simple_repeat	chr2	153942267	153942269	+	ENSMUST00000154281.1,ENSMUSG00000074665.10	Bpifb4	ENSMUSG00000074665.10	ENSMUST00000154281.1	protein_coding	chr2:153942268-153944837
chr2	154354262	154354656	+	IAPLTR1_Mm	LTR	ERVK	chr2	154354343	154354345	-	ENSMUST00000152180.1,ENSMUSG00000027487.11	Cdk5rap1	ENSMUSG00000027487.11	ENSMUST00000152180.1	protein_coding	chr2:154350522-154354344
chr2	154372970	154373145	+	B2_Mm2	SINE	B2	chr2	154373009	154373011	-	ENSMUST00000109731.7,ENSMUSG00000027487.11	Cdk5rap1	ENSMUSG00000027487.11	ENSMUST00000109731.7	protein_coding	chr2:154335380-154373010
chr2	154436470	154436499	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	154436480	154436482	+	ENSMUST00000109725.7,ENSMUSG00000038533.15	Cbfa2t2	ENSMUSG00000038533.15	ENSMUST00000109725.7	protein_coding	chr2:154436481-154539356
chr2	154436470	154436499	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	154436483	154436485	+	ENSMUST00000099178.9,ENSMUSG00000038533.15	Cbfa2t2	ENSMUSG00000038533.15	ENSMUST00000099178.9	protein_coding	chr2:154436484-154526413
chr2	154436470	154436499	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	154436494	154436496	+	ENSMUST00000045270.14,ENSMUSG00000038533.15	Cbfa2t2	ENSMUSG00000038533.15	ENSMUST00000045270.14	protein_coding	chr2:154436495-154539356
chr2	154531007	154531113	+	PB1D9	SINE	Alu	chr2	154531038	154531040	+	ENSMUST00000139506.1,ENSMUSG00000038533.15	Cbfa2t2	ENSMUSG00000038533.15	ENSMUST00000139506.1	protein_coding	chr2:154531039-154534964
chr2	154632628	154632691	+	MIR3	SINE	MIR	chr2	154632635	154632637	-	ENSMUST00000153208.1,ENSMUSG00000085483.1	Gm14198	ENSMUSG00000085483.1	ENSMUST00000153208.1	antisense	chr2:154630002-154632636
chr2	154656998	154657113	+	G-rich	Low_complexity	Low_complexity	chr2	154657017	154657019	+	ENSMUST00000044277.9,ENSMUSG00000038467.15	Chmp4b	ENSMUSG00000038467.15	ENSMUST00000044277.9	protein_coding	chr2:154657018-154694785
chr2	154738331	154738646	-	MTEa	LTR	ERVL-MaLR	chr2	154738450	154738452	-	ENSMUST00000155334.1,ENSMUSG00000085691.1	Gm14216	ENSMUSG00000085691.1	ENSMUST00000155334.1	lincRNA	chr2:154722370-154738451
chr2	155017863	155018385	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr2	155018265	155018267	+	ENSMUST00000130870.1,ENSMUSG00000084897.1	Gm14226	ENSMUSG00000084897.1	ENSMUST00000130870.1	protein_coding	chr2:155018266-155027104
chr2	155074431	155074452	+	GC_rich	Low_complexity	Low_complexity	chr2	155074446	155074448	-	ENSMUST00000137242.1,ENSMUSG00000027597.15	Ahcy	ENSMUSG00000027597.15	ENSMUST00000137242.1	protein_coding	chr2:155065660-155074447
chr2	155074431	155074452	+	GC_rich	Low_complexity	Low_complexity	chr2	155074446	155074448	-	ENSMUST00000146367.1,ENSMUSG00000027597.15	Ahcy	ENSMUSG00000027597.15	ENSMUST00000146367.1	protein_coding	chr2:155068566-155074447
chr2	155082155	155082259	-	ID_B1	SINE	B4	chr2	155082180	155082182	+	ENSMUST00000211194.1,ENSMUSG00000109877.1	Gm45609	ENSMUSG00000109877.1	ENSMUST00000211194.1	antisense	chr2:155082181-155099510
chr2	155095743	155095764	+	(T)n	Simple_repeat	Simple_repeat	chr2	155095743	155095745	+	ENSMUST00000210144.1,ENSMUSG00000109877.1	Gm45609	ENSMUSG00000109877.1	ENSMUST00000210144.1	antisense	chr2:155095744-155099510
chr2	155304646	155304697	-	MER3	DNA	hAT-Charlie	chr2	155304691	155304693	-	ENSMUST00000125334.1,ENSMUSG00000038383.16	Pigu	ENSMUSG00000038383.16	ENSMUST00000125334.1	protein_coding	chr2:155301266-155304692
chr2	155381014	155381081	-	B1_Mus1	SINE	Alu	chr2	155381058	155381060	+	ENSMUST00000151466.7,ENSMUSG00000038375.15	Trp53inp2	ENSMUSG00000038375.15	ENSMUST00000151466.7	protein_coding	chr2:155381059-155386057
chr2	155473872	155473910	+	GC_rich	Low_complexity	Low_complexity	chr2	155473893	155473895	-	ENSMUST00000123293.7,ENSMUSG00000038369.14	Ncoa6	ENSMUSG00000038369.14	ENSMUST00000123293.7	protein_coding	chr2:155406833-155473894
chr2	155591069	155591184	+	PB1D7	SINE	Alu	chr2	155591130	155591132	+	ENSMUST00000130859.1,ENSMUSG00000085317.1	Gssos2	ENSMUSG00000085317.1	ENSMUST00000130859.1	antisense	chr2:155591131-155592851
chr2	155594351	155594490	+	B1_Mur1	SINE	Alu	chr2	155594474	155594476	-	ENSMUST00000144649.1,ENSMUSG00000087616.1	Gm14257	ENSMUSG00000087616.1	ENSMUST00000144649.1	antisense	chr2:155593565-155594475
chr2	155668478	155668514	+	(TAAA)n	Simple_repeat	Simple_repeat	chr2	155668477	155668479	-	ENSMUST00000147913.1,ENSMUSG00000038324.13	Trpc4ap	ENSMUSG00000038324.13	ENSMUST00000147913.1	protein_coding	chr2:155665882-155668478
chr2	155692081	155692149	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	155692122	155692124	-	ENSMUST00000136764.1,ENSMUSG00000038324.13	Trpc4ap	ENSMUSG00000038324.13	ENSMUST00000136764.1	protein_coding	chr2:155673057-155692123
chr2	155735850	155736207	+	L1_Mus1	LINE	L1	chr2	155735865	155735867	-	ENSMUST00000166589.1,ENSMUSG00000092123.1	Gm17581	ENSMUSG00000092123.1	ENSMUST00000166589.1	protein_coding	chr2:155735810-155735866
chr2	155775292	155775402	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	155775341	155775343	+	ENSMUST00000029141.5,ENSMUSG00000027612.7	Mmp24	ENSMUSG00000027612.7	ENSMUST00000029141.5	protein_coding	chr2:155775342-155818366
chr2	155806987	155807105	+	PB1D11	SINE	Alu	chr2	155807023	155807025	+	ENSMUST00000135945.1,ENSMUSG00000027612.7	Mmp24	ENSMUSG00000027612.7	ENSMUST00000135945.1	protein_coding	chr2:155807024-155810379
chr2	155851599	155851695	-	B1_Mur1	SINE	Alu	chr2	155851691	155851693	-	ENSMUST00000161484.1,ENSMUSG00000005882.18	Uqcc1	ENSMUSG00000005882.18	ENSMUST00000161484.1	protein_coding	chr2:155848184-155851692
chr2	156102498	156102639	+	B1_Mus1	SINE	Alu	chr2	156102627	156102629	-	ENSMUST00000184152.1,ENSMUSG00000074643.12	Cpne1	ENSMUSG00000074643.12	ENSMUST00000184152.1	protein_coding	chr2:156078911-156102628
chr2	156165198	156165240	+	(TA)n	Simple_repeat	Simple_repeat	chr2	156165211	156165213	-	ENSMUST00000135274.1,ENSMUSG00000027620.16	Rbm39	ENSMUSG00000027620.16	ENSMUST00000135274.1	protein_coding	chr2:156161831-156165212
chr2	156168008	156168155	-	B1_Mus1	SINE	Alu	chr2	156168147	156168149	-	ENSMUST00000130516.7,ENSMUSG00000027620.16	Rbm39	ENSMUSG00000027620.16	ENSMUST00000130516.7	protein_coding	chr2:156163986-156168148
chr2	156172878	156173024	+	CT-rich	Low_complexity	Low_complexity	chr2	156172960	156172962	-	ENSMUST00000150272.7,ENSMUSG00000027620.16	Rbm39	ENSMUSG00000027620.16	ENSMUST00000150272.7	protein_coding	chr2:156164920-156172961
chr2	156196621	156196643	+	GC_rich	Low_complexity	Low_complexity	chr2	156196641	156196643	+	ENSMUST00000037401.9,ENSMUSG00000038116.16	Phf20	ENSMUSG00000038116.16	ENSMUST00000037401.9	protein_coding	chr2:156196642-156309952
chr2	156222758	156222944	-	B2_Mm1a	SINE	B2	chr2	156222879	156222881	+	ENSMUST00000153822.1,ENSMUSG00000038116.16	Phf20	ENSMUSG00000038116.16	ENSMUST00000153822.1	protein_coding	chr2:156222880-156251810
chr2	156296222	156296426	-	ID_B1	SINE	B4	chr2	156296404	156296406	+	ENSMUST00000122814.1,ENSMUSG00000038116.16	Phf20	ENSMUSG00000038116.16	ENSMUST00000122814.1	protein_coding	chr2:156296405-156304692
chr2	156386067	156386257	+	7SK	RNA	RNA	chr2	156386106	156386108	+	ENSMUST00000158012.1,ENSMUSG00000088637.1	Gm22316	ENSMUSG00000088637.1	ENSMUST00000158012.1	misc_RNA	chr2:156386107-156386322
chr2	156392795	156392960	-	RLTR45-int	LTR	ERVK	chr2	156392828	156392830	-	ENSMUST00000192590.1,ENSMUSG00000102869.2	2900097C17Rik	ENSMUSG00000102869.2	ENSMUST00000192590.1	lincRNA	chr2:156392491-156392829
chr2	156421051	156421088	+	(CGAG)n	Simple_repeat	Simple_repeat	chr2	156421051	156421053	+	ENSMUST00000142048.7,ENSMUSG00000027624.19	Epb41l1	ENSMUSG00000027624.19	ENSMUST00000142048.7	protein_coding	chr2:156421052-156502428
chr2	156421051	156421088	+	(CGAG)n	Simple_repeat	Simple_repeat	chr2	156421083	156421085	+	ENSMUST00000125153.8,ENSMUSG00000027624.19	Epb41l1	ENSMUSG00000027624.19	ENSMUST00000125153.8	protein_coding	chr2:156421084-156522764
chr2	156533444	156533516	-	MIR3	SINE	MIR	chr2	156533506	156533508	+	ENSMUST00000137067.1,ENSMUSG00000027624.19	Epb41l1	ENSMUSG00000027624.19	ENSMUST00000137067.1	protein_coding	chr2:156533507-156539986
chr2	156613490	156613760	+	GC_rich	Low_complexity	Low_complexity	chr2	156613704	156613706	+	ENSMUST00000109567.9,ENSMUSG00000061689.15	Dlgap4	ENSMUSG00000061689.15	ENSMUST00000109567.9	protein_coding	chr2:156613705-156764361
chr2	156613490	156613760	+	GC_rich	Low_complexity	Low_complexity	chr2	156613704	156613706	+	ENSMUST00000169464.8,ENSMUSG00000061689.15	Dlgap4	ENSMUSG00000061689.15	ENSMUST00000169464.8	protein_coding	chr2:156613705-156764363
chr2	156849891	156850049	+	MLT1F-int	LTR	ERVL-MaLR	chr2	156849955	156849957	+	ENSMUST00000175634.1,ENSMUSG00000062175.13	Tgif2	ENSMUSG00000062175.13	ENSMUST00000175634.1	protein_coding	chr2:156849956-156853193
chr2	156857878	156857956	+	ID_B1	SINE	B4	chr2	156857945	156857947	-	ENSMUST00000099141.2,ENSMUSG00000074629.2	4930518I15Rik	ENSMUSG00000074629.2	ENSMUST00000099141.2	protein_coding	chr2:156856616-156857946
chr2	156860198	156860311	+	ID_B1	SINE	B4	chr2	156860304	156860306	+	ENSMUST00000183465.1,ENSMUSG00000098755.1	Gm27651	ENSMUSG00000098755.1	ENSMUST00000183465.1	misc_RNA	chr2:156860305-156860550
chr2	156992028	156992072	+	(CAG)n	Simple_repeat	Simple_repeat	chr2	156992042	156992044	-	ENSMUST00000069600.12,ENSMUSG00000027634.14	Ndrg3	ENSMUSG00000027634.14	ENSMUST00000069600.12	protein_coding	chr2:156927345-156992043
chr2	156992028	156992072	+	(CAG)n	Simple_repeat	Simple_repeat	chr2	156992055	156992057	-	ENSMUST00000072298.12,ENSMUSG00000027634.14	Ndrg3	ENSMUSG00000027634.14	ENSMUST00000072298.12	protein_coding	chr2:156927345-156992056
chr2	156992028	156992072	+	(CAG)n	Simple_repeat	Simple_repeat	chr2	156992034	156992036	-	ENSMUST00000109558.1,ENSMUSG00000027634.14	Ndrg3	ENSMUSG00000027634.14	ENSMUST00000109558.1	protein_coding	chr2:156934303-156992035
chr2	156992028	156992072	+	(CAG)n	Simple_repeat	Simple_repeat	chr2	156992046	156992048	-	ENSMUST00000126627.1,ENSMUSG00000027634.14	Ndrg3	ENSMUSG00000027634.14	ENSMUST00000126627.1	protein_coding	chr2:156956343-156992047
chr2	157003213	157003339	+	MT2B	LTR	ERVL	chr2	157003255	157003257	-	ENSMUST00000141388.1,ENSMUSG00000027635.15	Dsn1	ENSMUSG00000027635.15	ENSMUST00000141388.1	protein_coding	chr2:157001685-157003256
chr2	157003243	157003372	+	B1_Mur3	SINE	Alu	chr2	157003255	157003257	-	ENSMUST00000141388.1,ENSMUSG00000027635.15	Dsn1	ENSMUSG00000027635.15	ENSMUST00000141388.1	protein_coding	chr2:157001685-157003256
chr2	157079253	157079339	+	GC_rich	Low_complexity	Low_complexity	chr2	157079253	157079255	-	ENSMUST00000069098.6,ENSMUSG00000055485.6	Soga1	ENSMUSG00000055485.6	ENSMUST00000069098.6	protein_coding	chr2:157015799-157079254
chr2	157281925	157282120	-	B2_Mm1a	SINE	B2	chr2	157281942	157281944	+	ENSMUST00000156007.7,ENSMUSG00000027642.15	Rpn2	ENSMUSG00000027642.15	ENSMUST00000156007.7	protein_coding	chr2:157281943-157290592
chr2	157319655	157319801	-	B1_Mm	SINE	Alu	chr2	157319782	157319784	+	ENSMUST00000149924.1,ENSMUSG00000027642.15	Rpn2	ENSMUSG00000027642.15	ENSMUST00000149924.1	protein_coding	chr2:157319783-157322160
chr2	157346614	157347012	+	RMER20C_Mm	LTR	ERVK	chr2	157346654	157346656	-	ENSMUST00000029172.1,ENSMUSG00000027643.9	Ghrh	ENSMUSG00000027643.9	ENSMUST00000029172.1	protein_coding	chr2:157329497-157346655
chr2	157424071	157424138	+	GC_rich	Low_complexity	Low_complexity	chr2	157424115	157424117	+	ENSMUST00000145715.1,ENSMUSG00000027646.15	Src	ENSMUSG00000027646.15	ENSMUST00000145715.1	protein_coding	chr2:157424116-157455707
chr2	157455541	157455693	-	MIR3	SINE	MIR	chr2	157455670	157455672	+	ENSMUST00000109531.7,ENSMUSG00000027646.15	Src	ENSMUSG00000027646.15	ENSMUST00000109531.7	protein_coding	chr2:157455671-157471838
chr2	157528977	157529139	+	(TTCCC)n	Simple_repeat	Simple_repeat	chr2	157528984	157528986	-	ENSMUST00000121060.1,ENSMUSG00000082329.1	Gm14287	ENSMUSG00000082329.1	ENSMUST00000121060.1	processed_pseudogene	chr2:157528869-157528985
chr2	157560973	157561034	+	(GAAA)n	Simple_repeat	Simple_repeat	chr2	157561008	157561010	+	ENSMUST00000134513.1,ENSMUSG00000067786.16	Nnat	ENSMUSG00000067786.16	ENSMUST00000134513.1	protein_coding	chr2:157561009-157561855
chr2	157571079	157571429	-	ORR1B2	LTR	ERVL-MaLR	chr2	157571273	157571275	-	ENSMUST00000173378.7,ENSMUSG00000067787.10	Blcap	ENSMUSG00000067787.10	ENSMUST00000173378.7	protein_coding	chr2:157558102-157571274
chr2	157571079	157571429	-	ORR1B2	LTR	ERVL-MaLR	chr2	157571273	157571275	-	ENSMUST00000174336.1,ENSMUSG00000067787.10	Blcap	ENSMUSG00000067787.10	ENSMUST00000174336.1	protein_coding	chr2:157566875-157571274
chr2	157596989	157597427	-	RLTR17	LTR	ERVK	chr2	157597319	157597321	-	ENSMUST00000131365.1,ENSMUSG00000087547.1	Platr27	ENSMUSG00000087547.1	ENSMUST00000131365.1	lincRNA	chr2:157595583-157597320
chr2	157726000	157726065	+	U6	snRNA	snRNA	chr2	157725999	157726001	+	ENSMUST00000122468.1,ENSMUSG00000084417.1	Gm23463	ENSMUSG00000084417.1	ENSMUST00000122468.1	snRNA	chr2:157726000-157726098
chr2	158011225	158011507	+	B4	SINE	B4	chr2	158011297	158011299	-	ENSMUST00000124338.1,ENSMUSG00000027650.12	Tti1	ENSMUSG00000027650.12	ENSMUST00000124338.1	protein_coding	chr2:158008770-158011298
chr2	158146400	158146443	+	GC_rich	Low_complexity	Low_complexity	chr2	158146435	158146437	-	ENSMUST00000103122.9,ENSMUSG00000037820.15	Tgm2	ENSMUSG00000037820.15	ENSMUST00000103122.9	protein_coding	chr2:158116402-158146436
chr2	158191792	158192269	+	RLTR11A2	LTR	ERVK	chr2	158192007	158192009	+	ENSMUST00000109506.2,ENSMUSG00000078957.3	1700060C20Rik	ENSMUSG00000078957.3	ENSMUST00000109506.2	antisense	chr2:158192008-158195749
chr2	158487601	158487691	+	HY1	scRNA	scRNA	chr2	158487601	158487603	+	ENSMUST00000122695.1,ENSMUSG00000084644.1	Gm24379	ENSMUSG00000084644.1	ENSMUST00000122695.1	misc_RNA	chr2:158487602-158487687
chr2	158541689	158541769	+	(TCCC)n	Simple_repeat	Simple_repeat	chr2	158541736	158541738	+	ENSMUST00000135838.1,ENSMUSG00000074625.10	Arhgap40	ENSMUSG00000074625.10	ENSMUST00000135838.1	protein_coding	chr2:158541737-158550762
chr2	158740119	158740266	-	B1_Mus1	SINE	Alu	chr2	158740137	158740139	+	ENSMUST00000175299.1,ENSMUSG00000093040.1	Gm26141	ENSMUSG00000093040.1	ENSMUST00000175299.1	miRNA	chr2:158740138-158740263
chr2	158795902	158795926	+	AT_rich	Low_complexity	Low_complexity	chr2	158795922	158795924	+	ENSMUST00000133720.1,ENSMUSG00000027655.14	Dhx35	ENSMUSG00000027655.14	ENSMUST00000133720.1	protein_coding	chr2:158795923-158801508
chr2	159069814	159069949	-	MER5A	DNA	hAT-Charlie	chr2	159069862	159069864	+	ENSMUST00000196974.1,ENSMUSG00000104628.1	Gm44319	ENSMUSG00000104628.1	ENSMUST00000196974.1	miRNA	chr2:159069863-159069955
chr2	159455765	159456696	-	MMERVK10C-int	LTR	ERVK	chr2	159456456	159456458	-	ENSMUST00000120414.1,ENSMUSG00000083913.1	Gm14219	ENSMUSG00000083913.1	ENSMUST00000120414.1	processed_pseudogene	chr2:159456170-159456457
chr2	160583199	160583496	+	RLTR27	LTR	ERVK	chr2	160583356	160583358	+	ENSMUST00000128681.1,ENSMUSG00000078955.3	Gm14222	ENSMUSG00000078955.3	ENSMUST00000128681.1	sense_intronic	chr2:160583357-160585191
chr2	160624447	160624595	-	B1_Mus2	SINE	Alu	chr2	160624467	160624469	+	ENSMUST00000175047.1,ENSMUSG00000094247.1	Gm23968	ENSMUSG00000094247.1	ENSMUST00000175047.1	miRNA	chr2:160624468-160624592
chr2	160731670	160731816	+	C-rich	Low_complexity	Low_complexity	chr2	160731698	160731700	+	ENSMUST00000174885.1,ENSMUSG00000016933.17	Plcg1	ENSMUSG00000016933.17	ENSMUST00000174885.1	protein_coding	chr2:160731699-160747888
chr2	160731670	160731816	+	C-rich	Low_complexity	Low_complexity	chr2	160731732	160731734	+	ENSMUST00000109462.7,ENSMUSG00000016933.17	Plcg1	ENSMUSG00000016933.17	ENSMUST00000109462.7	protein_coding	chr2:160731733-160763286
chr2	160926641	160926830	-	B2_Mm2	SINE	B2	chr2	160926647	160926649	-	ENSMUST00000131908.1,ENSMUSG00000087147.1	Gm14228	ENSMUSG00000087147.1	ENSMUST00000131908.1	lincRNA	chr2:160925541-160926648
chr2	161178988	161179121	-	L2a	LINE	L2	chr2	161179063	161179065	+	ENSMUST00000131401.1,ENSMUSG00000067745.4	Gm14243	ENSMUSG00000067745.4	ENSMUST00000131401.1	lincRNA	chr2:161179064-161216577
chr2	161331068	161331406	+	ORR1E	LTR	ERVL-MaLR	chr2	161331313	161331315	+	ENSMUST00000151260.1,ENSMUSG00000087031.1	Gm14241	ENSMUSG00000087031.1	ENSMUST00000151260.1	lincRNA	chr2:161331314-161332253
chr2	161513905	161514020	+	L1ME3G	LINE	L1	chr2	161514011	161514013	-	ENSMUST00000188874.1,ENSMUSG00000100943.1	Gm29229	ENSMUSG00000100943.1	ENSMUST00000188874.1	processed_transcript	chr2:161513690-161514012
chr2	162390619	162391297	+	RLTR17	LTR	ERVK	chr2	162390812	162390814	+	ENSMUST00000151688.1,ENSMUSG00000084919.1	Ptprtos	ENSMUSG00000084919.1	ENSMUST00000151688.1	antisense	chr2:162390813-162393945
chr2	162661146	162661179	+	GC_rich	Low_complexity	Low_complexity	chr2	162661146	162661148	-	ENSMUST00000109445.8,ENSMUSG00000053141.16	Ptprt	ENSMUSG00000053141.16	ENSMUST00000109445.8	protein_coding	chr2:161521990-162661147
chr2	162661146	162661179	+	GC_rich	Low_complexity	Low_complexity	chr2	162661146	162661148	-	ENSMUST00000109443.7,ENSMUSG00000053141.16	Ptprt	ENSMUSG00000053141.16	ENSMUST00000109443.7	protein_coding	chr2:161521990-162661147
chr2	162661146	162661179	+	GC_rich	Low_complexity	Low_complexity	chr2	162661146	162661148	-	ENSMUST00000109441.1,ENSMUSG00000053141.16	Ptprt	ENSMUSG00000053141.16	ENSMUST00000109441.1	protein_coding	chr2:161527509-162661147
chr2	162661146	162661179	+	GC_rich	Low_complexity	Low_complexity	chr2	162661162	162661164	+	ENSMUST00000145985.1,ENSMUSG00000054457.5	9430021M05Rik	ENSMUSG00000054457.5	ENSMUST00000145985.1	processed_transcript	chr2:162661163-162667109
chr2	162868174	162868334	+	MER20	DNA	hAT-Charlie	chr2	162868193	162868195	-	ENSMUST00000128846.1,ENSMUSG00000086030.1	Gm14255	ENSMUSG00000086030.1	ENSMUST00000128846.1	lincRNA	chr2:162867079-162868194
chr2	163059290	163059354	-	ID_B1	SINE	B4	chr2	163059348	163059350	+	ENSMUST00000137620.1,ENSMUSG00000017861.11	Mybl2	ENSMUSG00000017861.11	ENSMUST00000137620.1	protein_coding	chr2:163059349-163064474
chr2	163075062	163075372	-	MTE2b	LTR	ERVL-MaLR	chr2	163075152	163075154	+	ENSMUST00000133322.1,ENSMUSG00000017861.11	Mybl2	ENSMUSG00000017861.11	ENSMUST00000133322.1	protein_coding	chr2:163075153-163080779
chr2	163092879	163093025	-	B1_Mus2	SINE	Alu	chr2	163092898	163092900	+	ENSMUST00000175050.1,ENSMUSG00000096635.1	Gm22174	ENSMUSG00000096635.1	ENSMUST00000175050.1	miRNA	chr2:163092899-163093023
chr2	163122493	163122737	-	MLT1C	LTR	ERVL-MaLR	chr2	163122605	163122607	+	ENSMUST00000144092.1,ENSMUSG00000086152.1	Gm11454	ENSMUSG00000086152.1	ENSMUST00000144092.1	lincRNA	chr2:163122606-163143959
chr2	163411644	163411765	+	B1_Mur3	SINE	Alu	chr2	163411664	163411666	-	ENSMUST00000139142.1,ENSMUSG00000035399.12	Oser1	ENSMUSG00000035399.12	ENSMUST00000139142.1	protein_coding	chr2:163406586-163411665
chr2	163514512	163514616	+	U6	snRNA	snRNA	chr2	163514515	163514517	+	ENSMUST00000157783.1,ENSMUSG00000088408.1	Gm25881	ENSMUSG00000088408.1	ENSMUST00000157783.1	snRNA	chr2:163514516-163514618
chr2	163602306	163602337	+	GC_rich	Low_complexity	Low_complexity	chr2	163602313	163602315	+	ENSMUST00000171696.7,ENSMUSG00000017679.16	Ttpal	ENSMUSG00000017679.16	ENSMUST00000171696.7	protein_coding	chr2:163602314-163619012
chr2	163602306	163602337	+	GC_rich	Low_complexity	Low_complexity	chr2	163602321	163602323	+	ENSMUST00000109408.9,ENSMUSG00000017679.16	Ttpal	ENSMUSG00000017679.16	ENSMUST00000109408.9	protein_coding	chr2:163602322-163616500
chr2	163611417	163611597	-	MIRc	SINE	MIR	chr2	163611519	163611521	+	ENSMUST00000132904.1,ENSMUSG00000017679.16	Ttpal	ENSMUSG00000017679.16	ENSMUST00000132904.1	protein_coding	chr2:163611520-163615426
chr2	163658409	163658469	+	GC_rich	Low_complexity	Low_complexity	chr2	163658414	163658416	+	ENSMUST00000099105.8,ENSMUSG00000035268.14	Pkig	ENSMUSG00000035268.14	ENSMUST00000099105.8	protein_coding	chr2:163658415-163725688
chr2	163658409	163658469	+	GC_rich	Low_complexity	Low_complexity	chr2	163658457	163658459	+	ENSMUST00000152418.7,ENSMUSG00000035268.14	Pkig	ENSMUSG00000035268.14	ENSMUST00000152418.7	protein_coding	chr2:163658458-163721198
chr2	163918683	163918729	+	GC_rich	Low_complexity	Low_complexity	chr2	163918682	163918684	-	ENSMUST00000044734.2,ENSMUSG00000035226.5	Rims4	ENSMUSG00000035226.5	ENSMUST00000044734.2	protein_coding	chr2:163859751-163918683
chr2	163994911	163995052	+	CT-rich	Low_complexity	Low_complexity	chr2	163994959	163994961	+	ENSMUST00000018470.9,ENSMUSG00000018326.9	Ywhab	ENSMUSG00000018326.9	ENSMUST00000018470.9	protein_coding	chr2:163994960-164018588
chr2	164065621	164065814	+	B2_Mm2	SINE	B2	chr2	164065714	164065716	-	ENSMUST00000132602.1,ENSMUSG00000018322.10	Tomm34	ENSMUSG00000018322.10	ENSMUST00000132602.1	protein_coding	chr2:164053540-164065715
chr2	164071154	164071201	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr2	164071168	164071170	-	ENSMUST00000109384.9,ENSMUSG00000018322.10	Tomm34	ENSMUSG00000018322.10	ENSMUST00000109384.9	protein_coding	chr2:164053540-164071169
chr2	164190526	164190631	+	(CTGGGG)n	Simple_repeat	Simple_repeat	chr2	164190607	164190609	-	ENSMUST00000051272.7,ENSMUSG00000042845.7	Wfdc12	ENSMUSG00000042845.7	ENSMUST00000051272.7	protein_coding	chr2:164189231-164190608
chr2	164192628	164192954	+	ORR1A4	LTR	ERVL-MaLR	chr2	164192766	164192768	+	ENSMUST00000135739.1,ENSMUSG00000085649.7	A730032A03Rik	ENSMUSG00000085649.7	ENSMUST00000135739.1	antisense	chr2:164192767-164196564
chr2	164221309	164221696	+	L1M4c	LINE	L1	chr2	164221630	164221632	-	ENSMUST00000018355.10,ENSMUSG00000018211.13	Wfdc15b	ENSMUSG00000018211.13	ENSMUST00000018355.10	protein_coding	chr2:164214454-164221631
chr2	164221309	164221696	+	L1M4c	LINE	L1	chr2	164221659	164221661	-	ENSMUST00000109376.8,ENSMUSG00000018211.13	Wfdc15b	ENSMUSG00000018211.13	ENSMUST00000109376.8	protein_coding	chr2:164214454-164221660
chr2	164550274	164550666	-	L2a	LINE	L2	chr2	164550529	164550531	+	ENSMUST00000151754.1,ENSMUSG00000086179.1	Gm14317	ENSMUSG00000086179.1	ENSMUST00000151754.1	lincRNA	chr2:164550530-164559730
chr2	164573348	164573769	+	RLTR9C	LTR	ERVK	chr2	164573458	164573460	-	ENSMUST00000099097.3,ENSMUSG00000074596.3	Spint3	ENSMUSG00000074596.3	ENSMUST00000099097.3	protein_coding	chr2:164569695-164573459
chr2	164585418	164585756	-	MTD	LTR	ERVL-MaLR	chr2	164585446	164585448	-	ENSMUST00000109342.1,ENSMUSG00000074595.9	Wfdc6a	ENSMUSG00000074595.9	ENSMUST00000109342.1	protein_coding	chr2:164579519-164585447
chr2	164601935	164602040	+	U6	snRNA	snRNA	chr2	164601935	164601937	+	ENSMUST00000083863.1,ENSMUSG00000065797.1	Gm25512	ENSMUSG00000065797.1	ENSMUST00000083863.1	snRNA	chr2:164601936-164602042
chr2	164613353	164613553	+	ID_B1	SINE	B4	chr2	164613385	164613387	-	ENSMUST00000109339.7,ENSMUSG00000070533.11	Wfdc8	ENSMUSG00000070533.11	ENSMUST00000109339.7	protein_coding	chr2:164596466-164613386
chr2	164613353	164613553	+	ID_B1	SINE	B4	chr2	164613521	164613523	+	ENSMUST00000094346.2,ENSMUSG00000070531.4	Wfdc6b	ENSMUSG00000070531.4	ENSMUST00000094346.2	protein_coding	chr2:164613522-164618212
chr2	164761658	164761893	+	7SK	RNA	RNA	chr2	164761658	164761660	+	ENSMUST00000157601.1,ENSMUSG00000088226.1	Gm22596	ENSMUSG00000088226.1	ENSMUST00000157601.1	misc_RNA	chr2:164761659-164761974
chr2	164790408	164790419	+	B4	SINE	B4	chr2	164790410	164790412	+	ENSMUST00000173945.1,ENSMUSG00000050373.13	Snx21	ENSMUSG00000050373.13	ENSMUST00000173945.1	protein_coding	chr2:164790411-164793816
chr2	164796482	164796530	+	ID	SINE	ID	chr2	164796488	164796490	-	ENSMUST00000133053.1,ENSMUSG00000017307.16	Acot8	ENSMUSG00000017307.16	ENSMUST00000133053.1	protein_coding	chr2:164792768-164796489
chr2	164940628	164940796	-	MamTip1	DNA	hAT-Tip100	chr2	164940779	164940781	+	ENSMUST00000137626.1,ENSMUSG00000017737.2	Mmp9	ENSMUSG00000017737.2	ENSMUST00000137626.1	protein_coding	chr2:164940780-164948894
chr2	165761683	165761848	+	GA-rich	Low_complexity	Low_complexity	chr2	165761823	165761825	+	ENSMUST00000128696.1,ENSMUSG00000017897.18	Eya2	ENSMUSG00000017897.18	ENSMUST00000128696.1	protein_coding	chr2:165761824-165767129
chr2	165896906	165897015	+	L2a	LINE	L2	chr2	165896949	165896951	-	ENSMUST00000109262.7,ENSMUSG00000039671.18	Zmynd8	ENSMUSG00000039671.18	ENSMUST00000109262.7	protein_coding	chr2:165827182-165896950
chr2	165908048	165908194	+	B1_Mus2	SINE	Alu	chr2	165908174	165908176	-	ENSMUST00000175055.1,ENSMUSG00000092796.1	Gm22692	ENSMUSG00000092796.1	ENSMUST00000175055.1	miRNA	chr2:165908051-165908175
chr2	165985621	165985983	-	MTE2b	LTR	ERVL-MaLR	chr2	165985923	165985925	-	ENSMUST00000130022.1,ENSMUSG00000084816.1	Platr29	ENSMUSG00000084816.1	ENSMUST00000130022.1	lincRNA	chr2:165976757-165985924
chr2	166078065	166078241	-	B2_Mm1t	SINE	B2	chr2	166078118	166078120	-	ENSMUST00000143996.1,ENSMUSG00000006800.14	Sulf2	ENSMUSG00000006800.14	ENSMUST00000143996.1	protein_coding	chr2:166074815-166078119
chr2	166189696	166189775	+	5S	rRNA	rRNA	chr2	166189696	166189698	+	ENSMUST00000158301.1,ENSMUSG00000088926.1	Gm22687	ENSMUSG00000088926.1	ENSMUST00000158301.1	rRNA	chr2:166189697-166189801
chr2	166503596	166503798	-	B3	SINE	B2	chr2	166503659	166503661	-	ENSMUST00000226316.1,ENSMUSG00000085682.2	Gm14267	ENSMUSG00000085682.2	ENSMUST00000226316.1	transcribed_processed_pseudogene	chr2:166501706-166503660
chr2	166508012	166508317	+	ORR1E	LTR	ERVL-MaLR	chr2	166508070	166508072	-	ENSMUST00000228378.1,ENSMUSG00000085682.2	Gm14267	ENSMUSG00000085682.2	ENSMUST00000228378.1	transcribed_processed_pseudogene	chr2:166500041-166508071
chr2	166509147	166509271	-	ORR1E	LTR	ERVL-MaLR	chr2	166509151	166509153	-	ENSMUST00000228242.1,ENSMUSG00000085682.2	Gm14267	ENSMUSG00000085682.2	ENSMUST00000228242.1	transcribed_processed_pseudogene	chr2:166500041-166509152
chr2	166509147	166509271	-	ORR1E	LTR	ERVL-MaLR	chr2	166509162	166509164	-	ENSMUST00000226637.1,ENSMUSG00000085682.2	Gm14267	ENSMUSG00000085682.2	ENSMUST00000226637.1	transcribed_processed_pseudogene	chr2:166500041-166509163
chr2	166509147	166509271	-	ORR1E	LTR	ERVL-MaLR	chr2	166509173	166509175	-	ENSMUST00000228863.1,ENSMUSG00000085682.2	Gm14267	ENSMUSG00000085682.2	ENSMUST00000228863.1	transcribed_processed_pseudogene	chr2:166500041-166509174
chr2	166516159	166516535	-	ORR1A4	LTR	ERVL-MaLR	chr2	166516365	166516367	-	ENSMUST00000228324.1,ENSMUSG00000085682.2	Gm14267	ENSMUSG00000085682.2	ENSMUST00000228324.1	transcribed_processed_pseudogene	chr2:166500036-166516366
chr2	166682073	166682356	+	7SK	RNA	RNA	chr2	166682073	166682075	+	ENSMUST00000158520.1,ENSMUSG00000089145.1	Gm25265	ENSMUSG00000089145.1	ENSMUST00000158520.1	misc_RNA	chr2:166682074-166682420
chr2	166768741	166768847	+	U6	snRNA	snRNA	chr2	166768744	166768746	+	ENSMUST00000157438.1,ENSMUSG00000088063.1	Gm24477	ENSMUSG00000088063.1	ENSMUST00000157438.1	snRNA	chr2:166768745-166768847
chr2	166940517	166940950	-	BGLII_B	LTR	ERVK	chr2	166940832	166940834	+	ENSMUST00000129061.1,ENSMUSG00000002718.14	Cse1l	ENSMUSG00000002718.14	ENSMUST00000129061.1	protein_coding	chr2:166940833-166941819
chr2	166960159	166960332	+	B2_Mm2	SINE	B2	chr2	166960321	166960323	-	ENSMUST00000154506.1,ENSMUSG00000039536.16	Stau1	ENSMUSG00000039536.16	ENSMUST00000154506.1	protein_coding	chr2:166952304-166960322
chr2	166996284	166996316	+	GC_rich	Low_complexity	Low_complexity	chr2	166996298	166996300	-	ENSMUST00000109236.8,ENSMUSG00000039536.16	Stau1	ENSMUSG00000039536.16	ENSMUST00000109236.8	protein_coding	chr2:166948273-166996299
chr2	167188682	167188712	+	GC_rich	Low_complexity	Low_complexity	chr2	167188701	167188703	+	ENSMUST00000151217.7,ENSMUSG00000085151.7	1110018N20Rik	ENSMUSG00000085151.7	ENSMUST00000151217.7	processed_transcript	chr2:167188702-167192259
chr2	167201405	167201619	-	ID_B1	SINE	B4	chr2	167201575	167201577	+	ENSMUST00000143645.1,ENSMUSG00000086098.1	Gm14291	ENSMUSG00000086098.1	ENSMUST00000143645.1	antisense	chr2:167201576-167202799
chr2	167553141	167553578	-	L1MB7	LINE	L1	chr2	167553313	167553315	+	ENSMUST00000127006.1,ENSMUSG00000085596.1	Gm11476	ENSMUSG00000085596.1	ENSMUST00000127006.1	processed_transcript	chr2:167553314-167607845
chr2	167644356	167644483	-	B1_Mur4	SINE	Alu	chr2	167644458	167644460	-	ENSMUST00000175531.2,ENSMUSG00000093476.1	Gm22355	ENSMUSG00000093476.1	ENSMUST00000175531.2	miRNA	chr2:167644364-167644459
chr2	167661995	167662145	+	L2b	LINE	L2	chr2	167662108	167662110	+	ENSMUST00000137275.1,ENSMUSG00000085914.1	Gm14320	ENSMUSG00000085914.1	ENSMUST00000137275.1	antisense	chr2:167662109-167667697
chr2	168064758	168064904	+	MT2B	LTR	ERVL	chr2	168064896	168064898	-	ENSMUST00000175108.1,ENSMUSG00000092849.1	Gm24327	ENSMUSG00000092849.1	ENSMUST00000175108.1	miRNA	chr2:168064820-168064897
chr2	168064809	168064978	+	B1_Mur1	SINE	Alu	chr2	168064896	168064898	-	ENSMUST00000175108.1,ENSMUSG00000092849.1	Gm24327	ENSMUSG00000092849.1	ENSMUST00000175108.1	miRNA	chr2:168064820-168064897
chr2	168206698	168206871	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	168206708	168206710	-	ENSMUST00000139984.7,ENSMUSG00000051149.15	Adnp	ENSMUSG00000051149.15	ENSMUST00000139984.7	protein_coding	chr2:168184968-168206709
chr2	168206698	168206871	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	168206708	168206710	-	ENSMUST00000131200.1,ENSMUSG00000051149.15	Adnp	ENSMUSG00000051149.15	ENSMUST00000131200.1	protein_coding	chr2:168204357-168206709
chr2	168213204	168213397	-	B2_Mm2	SINE	B2	chr2	168213260	168213262	-	ENSMUST00000141036.7,ENSMUSG00000078919.10	Dpm1	ENSMUSG00000078919.10	ENSMUST00000141036.7	protein_coding	chr2:168210516-168213261
chr2	168215937	168216114	+	B2_Mm1t	SINE	B2	chr2	168215968	168215970	-	ENSMUST00000136582.1,ENSMUSG00000078919.10	Dpm1	ENSMUSG00000078919.10	ENSMUST00000136582.1	protein_coding	chr2:168210282-168215969
chr2	168281132	168281221	+	G-rich	Low_complexity	Low_complexity	chr2	168281131	168281133	-	ENSMUST00000109191.1,ENSMUSG00000074575.4	Kcng1	ENSMUSG00000074575.4	ENSMUST00000109191.1	protein_coding	chr2:168260117-168281132
chr2	168741751	168741900	+	GC_rich	Low_complexity	Low_complexity	chr2	168741799	168741801	-	ENSMUST00000029060.10,ENSMUSG00000027546.15	Atp9a	ENSMUSG00000027546.15	ENSMUST00000029060.10	protein_coding	chr2:168634438-168741800
chr2	168741751	168741900	+	GC_rich	Low_complexity	Low_complexity	chr2	168741799	168741801	-	ENSMUST00000140188.7,ENSMUSG00000027546.15	Atp9a	ENSMUSG00000027546.15	ENSMUST00000140188.7	protein_coding	chr2:168667079-168741800
chr2	168741934	168742072	+	(CG)n	Simple_repeat	Simple_repeat	chr2	168741961	168741963	-	ENSMUST00000109176.7,ENSMUSG00000027546.15	Atp9a	ENSMUSG00000027546.15	ENSMUST00000109176.7	protein_coding	chr2:168634438-168741962
chr2	168741934	168742072	+	(CG)n	Simple_repeat	Simple_repeat	chr2	168741963	168741965	-	ENSMUST00000178504.7,ENSMUSG00000027546.15	Atp9a	ENSMUSG00000027546.15	ENSMUST00000178504.7	protein_coding	chr2:168634463-168741964
chr2	168912548	168912637	+	MER5A1	DNA	hAT-Charlie	chr2	168912632	168912634	-	ENSMUST00000124599.1,ENSMUSG00000027551.15	Zfp64	ENSMUSG00000027551.15	ENSMUST00000124599.1	protein_coding	chr2:168906842-168912633
chr2	168978039	168978434	-	Lx8	LINE	L1	chr2	168978267	168978269	+	ENSMUST00000140241.1,ENSMUSG00000086348.1	1700017J07Rik	ENSMUSG00000086348.1	ENSMUST00000140241.1	lincRNA	chr2:168978268-168978906
chr2	168987337	168987704	-	MTD	LTR	ERVL-MaLR	chr2	168987372	168987374	-	ENSMUST00000125121.1,ENSMUSG00000086658.1	Gm14260	ENSMUSG00000086658.1	ENSMUST00000125121.1	lincRNA	chr2:168986566-168987373
chr2	169019898	169020058	-	B2_Mm2	SINE	B2	chr2	169020024	169020026	+	ENSMUST00000180562.1,ENSMUSG00000052368.2	Gm9873	ENSMUSG00000052368.2	ENSMUST00000180562.1	lincRNA	chr2:169020025-169021385
chr2	169020234	169020341	-	MER44D	DNA	TcMar-Tigger	chr2	169020269	169020271	+	ENSMUST00000063891.1,ENSMUSG00000052368.2	Gm9873	ENSMUSG00000052368.2	ENSMUST00000063891.1	lincRNA	chr2:169020270-169021366
chr2	169061120	169061239	+	RLTR20A4	LTR	ERVK	chr2	169061119	169061121	+	ENSMUST00000116765.1,ENSMUSG00000080415.1	Gm26469	ENSMUSG00000080415.1	ENSMUST00000116765.1	miRNA	chr2:169061120-169061240
chr2	169587738	169587817	+	RLTR17B_Mm	LTR	ERVK	chr2	169587744	169587746	-	ENSMUST00000109160.2,ENSMUSG00000078912.2	Gm11011	ENSMUSG00000078912.2	ENSMUST00000109160.2	protein_coding	chr2:169582845-169587745
chr2	170131200	170131246	+	GC_rich	Low_complexity	Low_complexity	chr2	170131219	170131221	-	ENSMUST00000063710.12,ENSMUSG00000052056.14	Zfp217	ENSMUSG00000052056.14	ENSMUST00000063710.12	protein_coding	chr2:170108643-170131220
chr2	170131200	170131246	+	GC_rich	Low_complexity	Low_complexity	chr2	170131219	170131221	-	ENSMUST00000149088.1,ENSMUSG00000052056.14	Zfp217	ENSMUSG00000052056.14	ENSMUST00000149088.1	protein_coding	chr2:170120333-170131220
chr2	170349669	170349747	+	MIRc	SINE	MIR	chr2	170349739	170349741	-	ENSMUST00000156657.7,ENSMUSG00000013523.13	Bcas1	ENSMUSG00000013523.13	ENSMUST00000156657.7	protein_coding	chr2:170347931-170349740
chr2	170405171	170405204	+	(TC)n	Simple_repeat	Simple_repeat	chr2	170405180	170405182	+	ENSMUST00000133586.1,ENSMUSG00000086970.1	Bcas1os1	ENSMUSG00000086970.1	ENSMUST00000133586.1	antisense	chr2:170405181-170407175
chr2	170512435	170512574	-	MIR	SINE	MIR	chr2	170512557	170512559	+	ENSMUST00000109147.2,ENSMUSG00000052033.13	Pfdn4	ENSMUSG00000052033.13	ENSMUST00000109147.2	protein_coding	chr2:170512558-170518718
chr2	170731747	170731820	+	CT-rich	Low_complexity	Low_complexity	chr2	170731806	170731808	+	ENSMUST00000029075.4,ENSMUSG00000027560.4	Dok5	ENSMUSG00000027560.4	ENSMUST00000029075.4	protein_coding	chr2:170731807-170879769
chr2	171233853	171234202	+	ORR1A1	LTR	ERVL-MaLR	chr2	171234008	171234010	+	ENSMUST00000129075.1,ENSMUSG00000086613.1	1700007M16Rik	ENSMUSG00000086613.1	ENSMUST00000129075.1	lincRNA	chr2:171234009-171238991
chr2	172176749	172176957	+	(CAG)n	Simple_repeat	Simple_repeat	chr2	172176781	172176783	+	ENSMUST00000200362.1,ENSMUSG00000105205.1	Gm44301	ENSMUSG00000105205.1	ENSMUST00000200362.1	miRNA	chr2:172176782-172176924
chr2	172288002	172288362	+	ORR1B1	LTR	ERVL-MaLR	chr2	172288132	172288134	+	ENSMUST00000152112.1,ENSMUSG00000085949.1	Gm14275	ENSMUSG00000085949.1	ENSMUST00000152112.1	lincRNA	chr2:172288133-172290520
chr2	172324194	172324560	-	MTEa	LTR	ERVL-MaLR	chr2	172324333	172324335	+	ENSMUST00000136315.1,ENSMUSG00000085905.1	Gm14273	ENSMUSG00000085905.1	ENSMUST00000136315.1	antisense	chr2:172324334-172338663
chr2	172864235	172864366	+	B1_Mur4	SINE	Alu	chr2	172864340	172864342	-	ENSMUST00000175419.1,ENSMUSG00000093160.1	Gm22773	ENSMUSG00000093160.1	ENSMUST00000175419.1	miRNA	chr2:172864264-172864341
chr2	173006544	173006688	-	B1_Mur4	SINE	Alu	chr2	173006643	173006645	+	ENSMUST00000124793.1,ENSMUSG00000027509.11	Rae1	ENSMUSG00000027509.11	ENSMUST00000124793.1	protein_coding	chr2:173006644-173009444
chr2	173011364	173011670	-	ORR1A3	LTR	ERVL-MaLR	chr2	173011663	173011665	+	ENSMUST00000123039.1,ENSMUSG00000027509.11	Rae1	ENSMUSG00000027509.11	ENSMUST00000123039.1	protein_coding	chr2:173011664-173012821
chr2	173719097	173719452	-	RLTR10B2	LTR	ERVK	chr2	173719414	173719416	+	ENSMUST00000073081.5,ENSMUSG00000057047.5	1700010B08Rik	ENSMUSG00000057047.5	ENSMUST00000073081.5	protein_coding	chr2:173719415-173722089
chr2	173982947	173986628	-	L1VL4	LINE	L1	chr2	173984690	173984692	-	ENSMUST00000120437.1,ENSMUSG00000081700.1	Atp5k-ps2	ENSMUSG00000081700.1	ENSMUST00000120437.1	processed_pseudogene	chr2:173984482-173984691
chr2	174110337	174110373	+	(CCGGG)n	Simple_repeat	Simple_repeat	chr2	174110348	174110350	+	ENSMUST00000044415.15,ENSMUSG00000039263.16	Npepl1	ENSMUSG00000039263.16	ENSMUST00000044415.15	protein_coding	chr2:174110349-174123070
chr2	174125884	174126139	+	B4A	SINE	B4	chr2	174125887	174125889	-	ENSMUST00000166709.1,ENSMUSG00000074555.5	Gm10714	ENSMUSG00000074555.5	ENSMUST00000166709.1	antisense	chr2:174125560-174125888
chr2	174183828	174183933	-	PB1D7	SINE	Alu	chr2	174183917	174183919	-	ENSMUST00000131346.1,ENSMUSG00000074555.5	Gm10714	ENSMUSG00000074555.5	ENSMUST00000131346.1	antisense	chr2:174125038-174183918
chr2	174247869	174248027	-	RLTR17B_Mm	LTR	ERVK	chr2	174247927	174247929	+	ENSMUST00000184218.1,ENSMUSG00000098467.1	Gm27591	ENSMUSG00000098467.1	ENSMUST00000184218.1	miRNA	chr2:174247928-174247995
chr2	174329936	174330050	+	C-rich	Low_complexity	Low_complexity	chr2	174330005	174330007	+	ENSMUST00000109085.7,ENSMUSG00000027523.19	Gnas	ENSMUSG00000027523.19	ENSMUST00000109085.7	protein_coding	chr2:174330006-174346744
chr2	174330095	174330124	+	(CGG)n	Simple_repeat	Simple_repeat	chr2	174330096	174330098	+	ENSMUST00000109084.7,ENSMUSG00000027523.19	Gnas	ENSMUSG00000027523.19	ENSMUST00000109084.7	protein_coding	chr2:174330097-174346744
chr2	174330205	174330295	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	174330286	174330288	+	ENSMUST00000109083.1,ENSMUSG00000027523.19	Gnas	ENSMUSG00000027523.19	ENSMUST00000109083.1	protein_coding	chr2:174330287-174338084
chr2	174472921	174472953	+	GC_rich	Low_complexity	Low_complexity	chr2	174472933	174472935	-	ENSMUST00000120822.1,ENSMUSG00000016257.15	Prelid3b	ENSMUSG00000016257.15	ENSMUST00000120822.1	protein_coding	chr2:174465694-174472934
chr2	174472921	174472953	+	GC_rich	Low_complexity	Low_complexity	chr2	174472930	174472932	-	ENSMUST00000141100.1,ENSMUSG00000016257.15	Prelid3b	ENSMUSG00000016257.15	ENSMUST00000141100.1	protein_coding	chr2:174469381-174472931
chr2	175038064	175039625	+	MurSatRep1	Unknown	Unknown	chr2	175038120	175038122	+	ENSMUST00000117051.1,ENSMUSG00000082112.1	Gm14445	ENSMUSG00000082112.1	ENSMUST00000117051.1	unprocessed_pseudogene	chr2:175038121-175041036
chr2	175086436	175088022	+	MurSatRep1	Unknown	Unknown	chr2	175086500	175086502	+	ENSMUST00000121827.1,ENSMUSG00000080888.3	Gm14387	ENSMUSG00000080888.3	ENSMUST00000121827.1	unprocessed_pseudogene	chr2:175086501-175089918
chr2	175131797	175133389	-	MurSatRep1	Unknown	Unknown	chr2	175131863	175131865	-	ENSMUST00000108929.2,ENSMUSG00000090093.8	Gm14399	ENSMUSG00000090093.8	ENSMUST00000108929.2	protein_coding	chr2:175130128-175131864
chr2	175131797	175133389	-	MurSatRep1	Unknown	Unknown	chr2	175133321	175133323	-	ENSMUST00000099029.3,ENSMUSG00000090093.8	Gm14399	ENSMUSG00000090093.8	ENSMUST00000099029.3	protein_coding	chr2:175132925-175133322
chr2	175153951	175154015	-	MER130	Unknown	Unknown	chr2	175153997	175153999	+	ENSMUST00000128606.1,ENSMUSG00000087588.1	Gm16355	ENSMUSG00000087588.1	ENSMUST00000128606.1	processed_pseudogene	chr2:175153998-175154228
chr2	175230681	175231359	-	MurSatRep1	Unknown	Unknown	chr2	175231290	175231292	-	ENSMUST00000119690.1,ENSMUSG00000082376.1	Gm14442	ENSMUSG00000082376.1	ENSMUST00000119690.1	unprocessed_pseudogene	chr2:175228176-175231291
chr2	175283233	175284813	+	MurSatRep1	Unknown	Unknown	chr2	175283297	175283299	+	ENSMUST00000098998.3,ENSMUSG00000078901.8	Gm14440	ENSMUSG00000078901.8	ENSMUST00000098998.3	protein_coding	chr2:175283298-175283694
chr2	175326076	175327665	-	MurSatRep1	Unknown	Unknown	chr2	175327597	175327599	-	ENSMUST00000109050.2,ENSMUSG00000078899.9	Gm4631	ENSMUSG00000078899.9	ENSMUST00000109050.2	protein_coding	chr2:175324743-175327598
chr2	175401905	175402779	-	MurSatRep1	Unknown	Unknown	chr2	175401953	175401955	-	ENSMUST00000129110.1,ENSMUSG00000095231.1	Gm14297	ENSMUSG00000095231.1	ENSMUST00000129110.1	unprocessed_pseudogene	chr2:175401664-175401954
chr2	175650937	175652526	+	MurSatRep1	Unknown	Unknown	chr2	175651004	175651006	+	ENSMUST00000185834.2,ENSMUSG00000094475.7	Gm11007	ENSMUSG00000094475.7	ENSMUST00000185834.2	protein_coding	chr2:175651005-175653860
chr2	175673380	175674254	+	MurSatRep1	Unknown	Unknown	chr2	175674202	175674204	+	ENSMUST00000124511.1,ENSMUSG00000084852.1	Gm16359	ENSMUSG00000084852.1	ENSMUST00000124511.1	unprocessed_pseudogene	chr2:175674203-175674491
chr2	175748496	175750085	+	MurSatRep1	Unknown	Unknown	chr2	175748563	175748565	+	ENSMUST00000189494.2,ENSMUSG00000094932.7	Gm2007	ENSMUSG00000094932.7	ENSMUST00000189494.2	protein_coding	chr2:175748564-175751419
chr2	175844802	175845480	+	MurSatRep1	Unknown	Unknown	chr2	175844963	175844965	+	ENSMUST00000145242.1,ENSMUSG00000086941.1	Gm2020	ENSMUSG00000086941.1	ENSMUST00000145242.1	unprocessed_pseudogene	chr2:175844964-175846922
chr2	176097385	176098971	+	MurSatRep1	Unknown	Unknown	chr2	176097449	176097451	+	ENSMUST00000178432.1,ENSMUSG00000078891.4	Gm11008	ENSMUSG00000078891.4	ENSMUST00000178432.1	lincRNA	chr2:176097450-176097852
chr2	176097385	176098971	+	MurSatRep1	Unknown	Unknown	chr2	176097787	176097789	+	ENSMUST00000109032.3,ENSMUSG00000078891.4	Gm11008	ENSMUSG00000078891.4	ENSMUST00000109032.3	lincRNA	chr2:176097788-176100706
chr2	176117261	176117928	-	MurSatRep1	Unknown	Unknown	chr2	176117865	176117867	-	ENSMUST00000144091.1,ENSMUSG00000085103.3	Gm16357	ENSMUSG00000085103.3	ENSMUST00000144091.1	unprocessed_pseudogene	chr2:176116023-176117866
chr2	176143176	176144764	-	MurSatRep1	Unknown	Unknown	chr2	176144696	176144698	-	ENSMUST00000178872.2,ENSMUSG00000095648.7	Gm2004	ENSMUSG00000095648.7	ENSMUST00000178872.2	protein_coding	chr2:176144300-176144697
chr2	176200986	176202556	+	MurSatRep1	Unknown	Unknown	chr2	176201041	176201043	+	ENSMUST00000156439.1,ENSMUSG00000086367.1	Gm6182	ENSMUSG00000086367.1	ENSMUST00000156439.1	unprocessed_pseudogene	chr2:176201042-176203572
chr2	176251569	176258936	+	ERVB4_2-I_MM-int	LTR	ERVK	chr2	176257248	176257250	+	ENSMUST00000168462.1,ENSMUSG00000094108.1	Gm17258	ENSMUSG00000094108.1	ENSMUST00000168462.1	pseudogene	chr2:176257249-176258516
chr2	176298767	176300357	+	MurSatRep1	Unknown	Unknown	chr2	176298826	176298828	+	ENSMUST00000123131.1,ENSMUSG00000084858.1	Gm1980	ENSMUSG00000084858.1	ENSMUST00000123131.1	unprocessed_pseudogene	chr2:176298827-176302568
chr2	176318951	176319560	-	MurSatRep1	Unknown	Unknown	chr2	176319493	176319495	-	ENSMUST00000108961.3,ENSMUSG00000078895.4	Gm11009	ENSMUSG00000078895.4	ENSMUST00000108961.3	protein_coding	chr2:176317638-176319494
chr2	176431764	176433344	+	MurSatRep1	Unknown	Unknown	chr2	176431828	176431830	+	ENSMUST00000172025.1,ENSMUSG00000089951.8	Gm14435	ENSMUSG00000089951.8	ENSMUST00000172025.1	protein_coding	chr2:176431829-176432225
chr2	176602447	176603321	-	MurSatRep1	Unknown	Unknown	chr2	176602495	176602497	-	ENSMUST00000118930.1,ENSMUSG00000094360.1	Gm14307	ENSMUSG00000094360.1	ENSMUST00000118930.1	unprocessed_pseudogene	chr2:176602206-176602496
chr2	176624175	176625764	-	MurSatRep1	Unknown	Unknown	chr2	176625629	176625631	-	ENSMUST00000126807.1,ENSMUSG00000078880.10	Gm14308	ENSMUSG00000078880.10	ENSMUST00000126807.1	protein_coding	chr2:176613364-176625630
chr2	176741359	176742238	+	MurSatRep1	Unknown	Unknown	chr2	176742171	176742173	+	ENSMUST00000120181.1,ENSMUSG00000081003.1	Gm14301	ENSMUSG00000081003.1	ENSMUST00000120181.1	unprocessed_pseudogene	chr2:176742172-176742495
chr2	176755933	176757508	-	MurSatRep1	Unknown	Unknown	chr2	176757438	176757440	-	ENSMUST00000117505.1,ENSMUSG00000081599.1	Gm14390	ENSMUSG00000081599.1	ENSMUST00000117505.1	unprocessed_pseudogene	chr2:176754399-176757439
chr2	176807294	176808881	+	MurSatRep1	Unknown	Unknown	chr2	176807361	176807363	+	ENSMUST00000179435.1,ENSMUSG00000078877.11	Gm14295	ENSMUSG00000078877.11	ENSMUST00000179435.1	protein_coding	chr2:176807362-176807759
chr2	176854022	176855612	-	MurSatRep1	Unknown	Unknown	chr2	176855547	176855549	-	ENSMUST00000117808.1,ENSMUSG00000083170.1	Gm14405	ENSMUSG00000083170.1	ENSMUST00000117808.1	unprocessed_pseudogene	chr2:176851851-176855548
chr2	176917539	176919127	-	MurSatRep1	Unknown	Unknown	chr2	176919058	176919060	-	ENSMUST00000135176.1,ENSMUSG00000074527.11	Gm14296	ENSMUSG00000074527.11	ENSMUST00000135176.1	protein_coding	chr2:176917542-176919059
chr2	176951821	176953391	-	MurSatRep1	Unknown	Unknown	chr2	176953322	176953324	-	ENSMUST00000120036.1,ENSMUSG00000081326.1	Gm14417	ENSMUSG00000081326.1	ENSMUST00000120036.1	unprocessed_pseudogene	chr2:176950908-176953323
chr2	177009613	177011201	+	MurSatRep1	Unknown	Unknown	chr2	177009680	177009682	+	ENSMUST00000178182.1,ENSMUSG00000078875.10	Gm14419	ENSMUSG00000078875.10	ENSMUST00000178182.1	protein_coding	chr2:177009681-177010078
chr2	177055327	177056914	-	MurSatRep1	Unknown	Unknown	chr2	177056837	177056839	-	ENSMUST00000121755.1,ENSMUSG00000083111.1	Gm14421	ENSMUSG00000083111.1	ENSMUST00000121755.1	unprocessed_pseudogene	chr2:177053516-177056838
chr2	177104984	177106543	-	MurSatRep1	Unknown	Unknown	chr2	177106487	177106489	-	ENSMUST00000118260.1,ENSMUSG00000082377.1	Gm14415	ENSMUSG00000082377.1	ENSMUST00000118260.1	unprocessed_pseudogene	chr2:177103564-177106488
chr2	177126217	177127782	-	MurSatRep1	Unknown	Unknown	chr2	177127708	177127710	-	ENSMUST00000121798.1,ENSMUSG00000082765.3	Gm14411	ENSMUSG00000082765.3	ENSMUST00000121798.1	unprocessed_pseudogene	chr2:177125463-177127709
chr2	177138595	177140181	+	MurSatRep1	Unknown	Unknown	chr2	177138659	177138661	+	ENSMUST00000118630.1,ENSMUSG00000082724.3	Gm14416	ENSMUSG00000082724.3	ENSMUST00000118630.1	unprocessed_pseudogene	chr2:177138660-177142331
chr2	177194306	177195895	-	MurSatRep1	Unknown	Unknown	chr2	177195760	177195762	-	ENSMUST00000156269.1,ENSMUSG00000078870.9	Gm14410	ENSMUSG00000078870.9	ENSMUST00000156269.1	protein_coding	chr2:177183453-177195761
chr2	177227449	177229026	-	MurSatRep1	Unknown	Unknown	chr2	177228962	177228964	-	ENSMUST00000117234.1,ENSMUSG00000083817.1	Gm14400	ENSMUSG00000083817.1	ENSMUST00000117234.1	unprocessed_pseudogene	chr2:177225473-177228963
chr2	177265636	177267201	-	MurSatRep1	Unknown	Unknown	chr2	177267035	177267037	-	ENSMUST00000108963.1,ENSMUSG00000078869.2	Gm14409	ENSMUSG00000078869.2	ENSMUST00000108963.1	protein_coding	chr2:177264654-177267036
chr2	177422327	177423004	-	MurSatRep1	Unknown	Unknown	chr2	177422935	177422937	-	ENSMUST00000119117.1,ENSMUSG00000082343.1	Gm14404	ENSMUSG00000082343.1	ENSMUST00000119117.1	unprocessed_pseudogene	chr2:177419902-177422936
chr2	177508538	177509600	+	MMSAT4	Satellite	Satellite	chr2	177508569	177508571	+	ENSMUST00000108940.2,ENSMUSG00000094786.1	Gm14403	ENSMUSG00000094786.1	ENSMUST00000108940.2	protein_coding	chr2:177508570-177509763
chr2	177734231	177734908	+	MurSatRep1	Unknown	Unknown	chr2	177734299	177734301	+	ENSMUST00000121358.1,ENSMUSG00000080709.1	Gm14324	ENSMUSG00000080709.1	ENSMUST00000121358.1	unprocessed_pseudogene	chr2:177734300-177738757
chr2	177767975	177769557	+	MurSatRep1	Unknown	Unknown	chr2	177768043	177768045	+	ENSMUST00000108942.4,ENSMUSG00000078864.10	Gm14322	ENSMUSG00000078864.10	ENSMUST00000108942.4	protein_coding	chr2:177768044-177770472
chr2	177833124	177834709	-	MurSatRep1	Unknown	Unknown	chr2	177834645	177834647	-	ENSMUST00000188914.6,ENSMUSG00000095362.7	Gm14325	ENSMUSG00000095362.7	ENSMUST00000188914.6	protein_coding	chr2:177831791-177834646
chr2	177854015	177855571	-	MurSatRep1	Unknown	Unknown	chr2	177855502	177855504	-	ENSMUST00000121881.1,ENSMUSG00000081574.1	Gm14429	ENSMUSG00000081574.1	ENSMUST00000121881.1	unprocessed_pseudogene	chr2:177852152-177855503
chr2	177904219	177905802	+	MurSatRep1	Unknown	Unknown	chr2	177904284	177904286	+	ENSMUST00000099001.3,ENSMUSG00000074521.9	Gm14327	ENSMUSG00000074521.9	ENSMUST00000099001.3	protein_coding	chr2:177904285-177904683
chr2	177921220	177921881	-	MurSatRep1	Unknown	Unknown	chr2	177921814	177921816	-	ENSMUST00000108986.2,ENSMUSG00000074529.10	Zfp972	ENSMUSG00000074529.10	ENSMUST00000108986.2	protein_coding	chr2:177921431-177921815
chr2	177981195	177982768	-	MurSatRep1	Unknown	Unknown	chr2	177982699	177982701	-	ENSMUST00000120408.1,ENSMUSG00000083702.1	Gm14428	ENSMUSG00000083702.1	ENSMUST00000120408.1	unprocessed_pseudogene	chr2:177980534-177982700
chr2	179613441	179613879	-	RLTR45-int	LTR	ERVK	chr2	179613566	179613568	-	ENSMUST00000120800.1,ENSMUSG00000083410.1	Gm14300	ENSMUSG00000083410.1	ENSMUST00000120800.1	processed_pseudogene	chr2:179612622-179613567
chr2	179975864	179976029	+	G-rich	Low_complexity	Low_complexity	chr2	179975992	179975994	+	ENSMUST00000153188.1,ENSMUSG00000085704.1	4921531C22Rik	ENSMUSG00000085704.1	ENSMUST00000153188.1	processed_transcript	chr2:179975993-179977987
chr2	180040007	180040450	+	RMER6B	LTR	ERVK	chr2	180040144	180040146	-	ENSMUST00000132431.1,ENSMUSG00000027566.15	Psma7	ENSMUSG00000027566.15	ENSMUST00000132431.1	protein_coding	chr2:180038069-180040145
chr2	180071774	180071985	-	ID_B1	SINE	B4	chr2	180071792	180071794	+	ENSMUST00000108901.7,ENSMUSG00000039069.19	Mtg2	ENSMUSG00000039069.19	ENSMUST00000108901.7	protein_coding	chr2:180071793-180085902
chr2	180082894	180083013	+	GA-rich	Low_complexity	Low_complexity	chr2	180082988	180082990	+	ENSMUST00000146182.1,ENSMUSG00000039069.19	Mtg2	ENSMUSG00000039069.19	ENSMUST00000146182.1	protein_coding	chr2:180082989-180085900
chr2	180104470	180104570	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr2	180104487	180104489	-	ENSMUST00000056480.9,ENSMUSG00000039059.11	Hrh3	ENSMUSG00000039059.11	ENSMUST00000056480.9	protein_coding	chr2:180099465-180104488
chr2	180149307	180149450	+	B1_Mur1	SINE	Alu	chr2	180149378	180149380	+	ENSMUST00000124225.1,ENSMUSG00000039050.8	Osbpl2	ENSMUSG00000039050.8	ENSMUST00000124225.1	protein_coding	chr2:180149379-180151408
chr2	180273352	180273453	+	GC_rich	Low_complexity	Low_complexity	chr2	180273445	180273447	-	ENSMUST00000135301.1,ENSMUSG00000038990.14	Cables2	ENSMUSG00000038990.14	ENSMUST00000135301.1	protein_coding	chr2:180262855-180273446
chr2	180273463	180273488	+	GC_rich	Low_complexity	Low_complexity	chr2	180273462	180273464	-	ENSMUST00000136706.7,ENSMUSG00000038990.14	Cables2	ENSMUSG00000038990.14	ENSMUST00000136706.7	protein_coding	chr2:180258543-180273463
chr2	180385842	180385937	-	RLTR31D_MM	LTR	ERVK	chr2	180385884	180385886	-	ENSMUST00000145549.1,ENSMUSG00000084843.1	B230312C02Rik	ENSMUSG00000084843.1	ENSMUST00000145549.1	lincRNA	chr2:180370491-180385885
chr2	180642291	180642347	+	GC_rich	Low_complexity	Low_complexity	chr2	180642346	180642348	-	ENSMUST00000131881.1,ENSMUSG00000038932.13	Tcfl5	ENSMUSG00000038932.13	ENSMUST00000131881.1	protein_coding	chr2:180637466-180642347
chr2	180675821	180675967	-	B1_Mm	SINE	Alu	chr2	180675954	180675956	-	ENSMUST00000037764.11,ENSMUSG00000038914.15	Dido1	ENSMUSG00000038914.15	ENSMUST00000037764.11	protein_coding	chr2:180668290-180675955
chr2	180698062	180698167	+	U6	snRNA	snRNA	chr2	180698062	180698064	+	ENSMUST00000082488.1,ENSMUSG00000064422.1	Gm22502	ENSMUSG00000064422.1	ENSMUST00000082488.1	snRNA	chr2:180698063-180698169
chr2	181039288	181039351	+	G-rich	Low_complexity	Low_complexity	chr2	181039304	181039306	-	ENSMUST00000067120.13,ENSMUSG00000027577.14	Chrna4	ENSMUSG00000027577.14	ENSMUST00000067120.13	protein_coding	chr2:181022311-181039305
chr2	181135125	181135159	+	GC_rich	Low_complexity	Low_complexity	chr2	181135126	181135128	-	ENSMUST00000197015.4,ENSMUSG00000016346.17	Kcnq2	ENSMUSG00000016346.17	ENSMUST00000197015.4	protein_coding	chr2:181075586-181135127
chr2	181135125	181135159	+	GC_rich	Low_complexity	Low_complexity	chr2	181135130	181135132	-	ENSMUST00000103050.9,ENSMUSG00000016346.17	Kcnq2	ENSMUSG00000016346.17	ENSMUST00000103050.9	protein_coding	chr2:181080899-181135131
chr2	181135220	181135269	+	GC_rich	Low_complexity	Low_complexity	chr2	181135260	181135262	-	ENSMUST00000103051.8,ENSMUSG00000016346.17	Kcnq2	ENSMUSG00000016346.17	ENSMUST00000103051.8	protein_coding	chr2:181079581-181135261
chr2	181135220	181135269	+	GC_rich	Low_complexity	Low_complexity	chr2	181135242	181135244	-	ENSMUST00000140789.1,ENSMUSG00000016346.17	Kcnq2	ENSMUSG00000016346.17	ENSMUST00000140789.1	protein_coding	chr2:181108444-181135243
chr2	181183512	181183613	+	U6	snRNA	snRNA	chr2	181183511	181183513	+	ENSMUST00000122747.1,ENSMUSG00000084696.1	Gm24892	ENSMUSG00000084696.1	ENSMUST00000122747.1	snRNA	chr2:181183512-181183615
chr2	181365240	181365269	+	(CCG)n	Simple_repeat	Simple_repeat	chr2	181365266	181365268	-	ENSMUST00000184859.1,ENSMUSG00000038671.15	Arfrp1	ENSMUSG00000038671.15	ENSMUST00000184859.1	protein_coding	chr2:181361449-181365267
chr2	181426035	181426140	-	PB1D9	SINE	Alu	chr2	181426036	181426038	-	ENSMUST00000158987.1,ENSMUSG00000089612.1	Gm22708	ENSMUSG00000089612.1	ENSMUST00000158987.1	snRNA	chr2:181425935-181426037
chr2	181459375	181459406	+	(TCCG)n	Simple_repeat	Simple_repeat	chr2	181459378	181459380	-	ENSMUST00000155535.1,ENSMUSG00000027583.13	Zbtb46	ENSMUSG00000027583.13	ENSMUST00000155535.1	protein_coding	chr2:181424228-181459379
chr2	181459407	181459503	+	GC_rich	Low_complexity	Low_complexity	chr2	181459425	181459427	-	ENSMUST00000029106.12,ENSMUSG00000027583.13	Zbtb46	ENSMUSG00000027583.13	ENSMUST00000029106.12	protein_coding	chr2:181387762-181459426
chr2	181459407	181459503	+	GC_rich	Low_complexity	Low_complexity	chr2	181459425	181459427	-	ENSMUST00000087409.9,ENSMUSG00000027583.13	Zbtb46	ENSMUSG00000027583.13	ENSMUST00000087409.9	protein_coding	chr2:181410545-181459426
chr2	181459407	181459503	+	GC_rich	Low_complexity	Low_complexity	chr2	181459425	181459427	-	ENSMUST00000146446.1,ENSMUSG00000027583.13	Zbtb46	ENSMUSG00000027583.13	ENSMUST00000146446.1	protein_coding	chr2:181421554-181459426
chr2	181512557	181512697	+	U1	snRNA	snRNA	chr2	181512577	181512579	+	ENSMUST00000130261.1,ENSMUSG00000000827.18	Tpd52l2	ENSMUSG00000000827.18	ENSMUST00000130261.1	protein_coding	chr2:181512578-181515333
chr2	181587630	181587667	+	(A)n	Simple_repeat	Simple_repeat	chr2	181587645	181587647	-	ENSMUST00000150552.1,ENSMUSG00000000823.16	Zfp512b	ENSMUSG00000000823.16	ENSMUST00000150552.1	protein_coding	chr2:181586721-181587646
chr2	181797460	181797606	+	GA-rich	Low_complexity	Low_complexity	chr2	181797575	181797577	+	ENSMUST00000129843.7,ENSMUSG00000010505.16	Myt1	ENSMUSG00000010505.16	ENSMUST00000129843.7	protein_coding	chr2:181797576-181827768
chr2	181797460	181797606	+	GA-rich	Low_complexity	Low_complexity	chr2	181797597	181797599	+	ENSMUST00000142245.1,ENSMUSG00000010505.16	Myt1	ENSMUSG00000010505.16	ENSMUST00000142245.1	protein_coding	chr2:181797598-181806539
chr3	3555456	3555504	+	(TG)n	Simple_repeat	Simple_repeat	chr3	3555464	3555466	+	ENSMUST00000104639.1,ENSMUSG00000077829.1	Gm23237	ENSMUSG00000077829.1	ENSMUST00000104639.1	miRNA	chr3:3555465-3555556
chr3	4304980	4305361	-	MTA_Mm	LTR	ERVL-MaLR	chr3	4305292	4305294	-	ENSMUST00000175001.1,ENSMUSG00000096480.1	Gm23976	ENSMUSG00000096480.1	ENSMUST00000175001.1	miRNA	chr3:4305193-4305293
chr3	4338344	4338998	-	L1Md_F2	LINE	L1	chr3	4338997	4338999	+	ENSMUST00000104719.1,ENSMUSG00000094830.1	n-R5s194	ENSMUSG00000094830.1	ENSMUST00000104719.1	rRNA	chr3:4338998-4339116
chr3	4338998	4339116	+	5S	rRNA	rRNA	chr3	4338997	4338999	+	ENSMUST00000104719.1,ENSMUSG00000094830.1	n-R5s194	ENSMUSG00000094830.1	ENSMUST00000104719.1	rRNA	chr3:4338998-4339116
chr3	5218484	5218531	+	C-rich	Low_complexity	Low_complexity	chr3	5218525	5218527	+	ENSMUST00000175866.7,ENSMUSG00000025255.18	Zfhx4	ENSMUSG00000025255.18	ENSMUST00000175866.7	protein_coding	chr3:5218526-5413165
chr3	5515260	5515736	-	RMER17A2	LTR	ERVK	chr3	5515332	5515334	-	ENSMUST00000176666.1,ENSMUSG00000093557.1	4930555M17Rik	ENSMUSG00000093557.1	ENSMUST00000176666.1	lincRNA	chr3:5512995-5515333
chr3	5746273	5752571	+	L1_Mus2	LINE	L1	chr3	5750805	5750807	+	ENSMUST00000192045.1,ENSMUSG00000103034.1	Gm8797	ENSMUSG00000103034.1	ENSMUST00000192045.1	protein_coding	chr3:5750806-5751295
chr3	5880834	5881351	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	5881040	5881042	+	ENSMUST00000179815.1,ENSMUSG00000096384.1	Gm25352	ENSMUSG00000096384.1	ENSMUST00000179815.1	miRNA	chr3:5881041-5881150
chr3	5885384	5885905	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	5885502	5885504	-	ENSMUST00000192782.1,ENSMUSG00000102979.1	Gm37350	ENSMUSG00000102979.1	ENSMUST00000192782.1	lincRNA	chr3:5880832-5885503
chr3	5885384	5885905	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	5885594	5885596	+	ENSMUST00000179561.1,ENSMUSG00000096130.1	Gm25144	ENSMUSG00000096130.1	ENSMUST00000179561.1	miRNA	chr3:5885595-5885704
chr3	6267900	6270765	+	MMERVK10C-int	LTR	ERVK	chr3	6267899	6267901	-	ENSMUST00000193578.1,ENSMUSG00000104270.1	Gm38298	ENSMUSG00000104270.1	ENSMUST00000193578.1	processed_pseudogene	chr3:6267783-6267900
chr3	6338680	6339202	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	6338990	6338992	-	ENSMUST00000178841.1,ENSMUSG00000093835.1	Gm23147	ENSMUSG00000093835.1	ENSMUST00000178841.1	miRNA	chr3:6338882-6338991
chr3	6977191	6977292	-	Lx8b	LINE	L1	chr3	6977267	6977269	+	ENSMUST00000158595.1,ENSMUSG00000089220.1	Gm22074	ENSMUSG00000089220.1	ENSMUST00000158595.1	snoRNA	chr3:6977268-6977380
chr3	8429157	8429263	+	U6	snRNA	snRNA	chr3	8429157	8429159	+	ENSMUST00000083269.1,ENSMUSG00000065203.1	Gm24614	ENSMUSG00000065203.1	ENSMUST00000083269.1	snRNA	chr3:8429158-8429264
chr3	8667249	8667283	+	GC_rich	Low_complexity	Low_complexity	chr3	8667255	8667257	-	ENSMUST00000042412.4,ENSMUSG00000040289.8	Hey1	ENSMUSG00000040289.8	ENSMUST00000042412.4	protein_coding	chr3:8663359-8667256
chr3	8962141	8962282	+	B1_Mus1	SINE	Alu	chr3	8962252	8962254	-	ENSMUST00000145905.7,ENSMUSG00000027506.15	Tpd52	ENSMUSG00000027506.15	ENSMUST00000145905.7	protein_coding	chr3:8931064-8962253
chr3	9061785	9062006	-	URR1B	DNA	hAT-Charlie	chr3	9061963	9061965	+	ENSMUST00000194792.1,ENSMUSG00000103116.1	4930539M17Rik	ENSMUSG00000103116.1	ENSMUST00000194792.1	lincRNA	chr3:9061964-9071074
chr3	9440969	9441204	-	ORR1E	LTR	ERVL-MaLR	chr3	9441035	9441037	-	ENSMUST00000192832.1,ENSMUSG00000040209.12	Zfp704	ENSMUSG00000040209.12	ENSMUST00000192832.1	protein_coding	chr3:9438696-9441036
chr3	9656463	9656531	+	RLTR12C	LTR	ERVK	chr3	9656519	9656521	+	ENSMUST00000195844.1,ENSMUSG00000103876.1	Gm17806	ENSMUSG00000103876.1	ENSMUST00000195844.1	processed_pseudogene	chr3:9656520-9656902
chr3	9971996	9972618	-	RMER17C2	LTR	ERVK	chr3	9972000	9972002	-	ENSMUST00000192578.1,ENSMUSG00000103698.1	Gm17877	ENSMUSG00000103698.1	ENSMUST00000192578.1	processed_pseudogene	chr3:9971188-9972001
chr3	10223335	10223636	-	IAPEY3C_LTR	LTR	ERVK	chr3	10223432	10223434	-	ENSMUST00000191824.2,ENSMUSG00000102705.2	4632432E15Rik	ENSMUSG00000102705.2	ENSMUST00000191824.2	TEC	chr3:10220995-10223433
chr3	10241790	10241859	-	ID4	SINE	ID	chr3	10241811	10241813	+	ENSMUST00000194040.2,ENSMUSG00000102834.2	1700029B24Rik	ENSMUSG00000102834.2	ENSMUST00000194040.2	TEC	chr3:10241812-10242308
chr3	10348607	10348629	+	(TTTG)n	Simple_repeat	Simple_repeat	chr3	10348624	10348626	-	ENSMUST00000140634.1,ENSMUSG00000039795.14	Zfand1	ENSMUSG00000039795.14	ENSMUST00000140634.1	protein_coding	chr3:10340817-10348625
chr3	10645979	10646337	-	Lx8	LINE	L1	chr3	10646315	10646317	+	ENSMUST00000191685.1,ENSMUSG00000104451.1	Gm37831	ENSMUSG00000104451.1	ENSMUST00000191685.1	TEC	chr3:10646316-10648102
chr3	10774467	10775484	+	L1_Mus1	LINE	L1	chr3	10774898	10774900	-	ENSMUST00000191748.1,ENSMUSG00000102470.1	Gm37244	ENSMUSG00000102470.1	ENSMUST00000191748.1	TEC	chr3:10772919-10774899
chr3	11154268	11154663	+	MTA_Mm	LTR	ERVL-MaLR	chr3	11154336	11154338	+	ENSMUST00000175281.1,ENSMUSG00000095289.1	Gm22547	ENSMUSG00000095289.1	ENSMUST00000175281.1	miRNA	chr3:11154337-11154437
chr3	11844259	11844550	-	IAPEY5_LTR	LTR	ERVK	chr3	11844358	11844360	-	ENSMUST00000192022.1,ENSMUSG00000104015.1	Gm10745	ENSMUSG00000104015.1	ENSMUST00000192022.1	lincRNA	chr3:11823229-11844359
chr3	12973599	12976349	-	L1_Mus2	LINE	L1	chr3	12975358	12975360	+	ENSMUST00000195564.1,ENSMUSG00000103735.1	Gm38317	ENSMUSG00000103735.1	ENSMUST00000195564.1	processed_pseudogene	chr3:12975359-12975701
chr3	14329739	14330266	-	L1Md_A	LINE	L1	chr3	14330226	14330228	+	ENSMUST00000192945.1,ENSMUSG00000102707.1	Gm38311	ENSMUSG00000102707.1	ENSMUST00000192945.1	processed_pseudogene	chr3:14330227-14330391
chr3	14808228	14808631	-	MER74C	LTR	ERVL	chr3	14808364	14808366	-	ENSMUST00000181860.7,ENSMUSG00000027556.15	Car1	ENSMUSG00000027556.15	ENSMUST00000181860.7	protein_coding	chr3:14766216-14808365
chr3	14808228	14808631	-	MER74C	LTR	ERVL	chr3	14808367	14808369	-	ENSMUST00000144327.2,ENSMUSG00000027556.15	Car1	ENSMUSG00000027556.15	ENSMUST00000144327.2	protein_coding	chr3:14770210-14808368
chr3	15171255	15171644	-	MTA_Mm	LTR	ERVL-MaLR	chr3	15171441	15171443	-	ENSMUST00000194008.1,ENSMUSG00000103912.1	Gm33819	ENSMUSG00000103912.1	ENSMUST00000194008.1	lincRNA	chr3:15153065-15171442
chr3	16013606	16014127	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	16013817	16013819	+	ENSMUST00000180054.1,ENSMUSG00000094598.1	Gm24694	ENSMUSG00000094598.1	ENSMUST00000180054.1	miRNA	chr3:16013818-16013927
chr3	17334128	17334516	-	Lx6	LINE	L1	chr3	17334424	17334426	-	ENSMUST00000191898.1,ENSMUSG00000104411.1	Gm30340	ENSMUSG00000104411.1	ENSMUST00000191898.1	lincRNA	chr3:17328694-17334425
chr3	17948332	17948414	-	RLTR20C2_MM	LTR	ERVK	chr3	17948409	17948411	+	ENSMUST00000029080.4,ENSMUSG00000027564.4	Cypt12	ENSMUSG00000027564.4	ENSMUST00000029080.4	protein_coding	chr3:17948410-17948959
chr3	18069275	18069657	+	MTA_Mm	LTR	ERVL-MaLR	chr3	18069325	18069327	+	ENSMUST00000178937.1,ENSMUSG00000094983.1	Gm23726	ENSMUSG00000094983.1	ENSMUST00000178937.1	miRNA	chr3:18069326-18069392
chr3	18177461	18177625	-	U1	snRNA	snRNA	chr3	18177624	18177626	-	ENSMUST00000083241.2,ENSMUSG00000096391.1	Gm23686	ENSMUSG00000096391.1	ENSMUST00000083241.2	snRNA	chr3:18177462-18177625
chr3	18177625	18177884	-	RMER5	LTR	ERV1	chr3	18177624	18177626	-	ENSMUST00000083241.2,ENSMUSG00000096391.1	Gm23686	ENSMUSG00000096391.1	ENSMUST00000083241.2	snRNA	chr3:18177462-18177625
chr3	18610103	18611113	-	ERVB4_2-I_MM-int	LTR	ERVK	chr3	18610830	18610832	-	ENSMUST00000192198.1,ENSMUSG00000104091.1	Gm37317	ENSMUSG00000104091.1	ENSMUST00000192198.1	processed_pseudogene	chr3:18609808-18610831
chr3	19143594	19143927	+	L1MEc	LINE	L1	chr3	19143898	19143900	-	ENSMUST00000193065.1,ENSMUSG00000103135.1	Gm37979	ENSMUSG00000103135.1	ENSMUST00000193065.1	TEC	chr3:19143188-19143899
chr3	19233431	19233620	-	B4	SINE	B4	chr3	19233528	19233530	-	ENSMUST00000139426.7,ENSMUSG00000069094.12	Pde7a	ENSMUSG00000069094.12	ENSMUST00000139426.7	protein_coding	chr3:19227722-19233529
chr3	19330773	19330999	+	7SK	RNA	RNA	chr3	19330772	19330774	+	ENSMUST00000158524.1,ENSMUSG00000089149.1	Gm22282	ENSMUSG00000089149.1	ENSMUST00000158524.1	misc_RNA	chr3:19330773-19331084
chr3	19560252	19560416	+	U1	snRNA	snRNA	chr3	19560252	19560254	+	ENSMUST00000082660.2,ENSMUSG00000096211.1	Gm23330	ENSMUSG00000096211.1	ENSMUST00000082660.2	snRNA	chr3:19560253-19560416
chr3	20108378	20108525	+	B1_Mm	SINE	Alu	chr3	20108475	20108477	+	ENSMUST00000155635.1,ENSMUSG00000002428.12	Hltf	ENSMUSG00000002428.12	ENSMUST00000155635.1	protein_coding	chr3:20108476-20118490
chr3	20391965	20393508	-	Lx5	LINE	L1	chr3	20391984	20391986	-	ENSMUST00000191874.1,ENSMUSG00000103573.1	Gm18426	ENSMUSG00000103573.1	ENSMUST00000191874.1	processed_pseudogene	chr3:20391013-20391985
chr3	20786708	20787943	+	RMER1A	Other	Other	chr3	20787936	20787938	+	ENSMUST00000192450.1,ENSMUSG00000102986.1	Gm38323	ENSMUSG00000102986.1	ENSMUST00000192450.1	processed_pseudogene	chr3:20787937-20788146
chr3	21800383	21800867	-	MLTR31FA_MM	LTR	ERVK	chr3	21800772	21800774	-	ENSMUST00000191725.1,ENSMUSG00000103441.1	7530428D23Rik	ENSMUSG00000103441.1	ENSMUST00000191725.1	transcribed_processed_pseudogene	chr3:21753529-21800773
chr3	21998371	21998776	+	IAPLTR2a	LTR	ERVK	chr3	21998467	21998469	-	ENSMUST00000196313.1,ENSMUSG00000106321.1	Gm43674	ENSMUSG00000106321.1	ENSMUST00000196313.1	lincRNA	chr3:21997678-21998468
chr3	22077236	22077297	+	G-rich	Low_complexity	Low_complexity	chr3	22077283	22077285	+	ENSMUST00000063988.13,ENSMUSG00000027630.13	Tbl1xr1	ENSMUSG00000027630.13	ENSMUST00000063988.13	protein_coding	chr3:22077284-22215293
chr3	22114285	22114693	+	MTA_Mm	LTR	ERVL-MaLR	chr3	22114488	22114490	+	ENSMUST00000192328.4,ENSMUSG00000027630.13	Tbl1xr1	ENSMUSG00000027630.13	ENSMUST00000192328.4	protein_coding	chr3:22114489-22211968
chr3	22251290	22251375	-	IAPEY3-int	LTR	ERVK	chr3	22251373	22251375	+	ENSMUST00000157150.1,ENSMUSG00000087775.1	Rprl2	ENSMUSG00000087775.1	ENSMUST00000157150.1	ribozyme	chr3:22251374-22251663
chr3	22297761	22298159	-	RLTR9E	LTR	ERVK	chr3	22297829	22297831	-	ENSMUST00000194390.1,ENSMUSG00000102987.1	Gm38324	ENSMUSG00000102987.1	ENSMUST00000194390.1	lincRNA	chr3:22285081-22297830
chr3	23938861	23939758	-	RMER17D	LTR	ERVK	chr3	23939476	23939478	-	ENSMUST00000192246.3,ENSMUSG00000102758.3	Naaladl2	ENSMUSG00000102758.3	ENSMUST00000192246.3	protein_coding	chr3:23804335-23939477
chr3	23972011	23972405	-	MTA_Mm	LTR	ERVL-MaLR	chr3	23972184	23972186	-	ENSMUST00000203997.1,ENSMUSG00000102758.3	Naaladl2	ENSMUSG00000102758.3	ENSMUST00000203997.1	protein_coding	chr3:23804985-23972185
chr3	24562074	24562180	+	U6	snRNA	snRNA	chr3	24562073	24562075	+	ENSMUST00000093715.1,ENSMUSG00000070227.1	Gm24704	ENSMUSG00000070227.1	ENSMUST00000093715.1	snRNA	chr3:24562074-24562180
chr3	25184905	25185015	+	LTR81	LTR	Gypsy	chr3	25184978	25184980	-	ENSMUST00000193255.1,ENSMUSG00000102855.1	Gm38002	ENSMUSG00000102855.1	ENSMUST00000193255.1	processed_pseudogene	chr3:25184800-25184979
chr3	25546019	25546108	+	5S	rRNA	rRNA	chr3	25546019	25546021	+	ENSMUST00000157320.1,ENSMUSG00000087945.1	Gm24250	ENSMUSG00000087945.1	ENSMUST00000157320.1	rRNA	chr3:25546020-25546154
chr3	26626163	26626340	-	MER53	DNA	hAT	chr3	26626310	26626312	-	ENSMUST00000116718.1,ENSMUSG00000080368.1	Gm25773	ENSMUSG00000080368.1	ENSMUST00000116718.1	miRNA	chr3:26626185-26626311
chr3	26637599	26637624	+	(T)n	Simple_repeat	Simple_repeat	chr3	26637619	26637621	+	ENSMUST00000047005.10,ENSMUSG00000039335.11	Spata16	ENSMUSG00000039335.11	ENSMUST00000047005.10	protein_coding	chr3:26637620-26983212
chr3	27026412	27026714	+	(CTG)n	Simple_repeat	Simple_repeat	chr3	27026554	27026556	-	ENSMUST00000198010.1,ENSMUSG00000105670.1	Gm44464	ENSMUSG00000105670.1	ENSMUST00000198010.1	miRNA	chr3:27026418-27026555
chr3	27711162	27711263	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	27711238	27711240	-	ENSMUST00000193779.1,ENSMUSG00000039286.12	Fndc3b	ENSMUSG00000039286.12	ENSMUST00000193779.1	protein_coding	chr3:27501435-27711239
chr3	27949805	27950183	+	MTC	LTR	ERVL-MaLR	chr3	27950001	27950003	+	ENSMUST00000127139.7,ENSMUSG00000027695.16	Pld1	ENSMUSG00000027695.16	ENSMUST00000127139.7	protein_coding	chr3:27950002-27957400
chr3	27949805	27950183	+	MTC	LTR	ERVL-MaLR	chr3	27950002	27950004	+	ENSMUST00000125338.7,ENSMUSG00000027695.16	Pld1	ENSMUSG00000027695.16	ENSMUST00000125338.7	protein_coding	chr3:27950003-28028687
chr3	28063106	28069605	-	IAPEz-int	LTR	ERVK	chr3	28069513	28069515	+	ENSMUST00000131842.1,ENSMUSG00000027695.16	Pld1	ENSMUSG00000027695.16	ENSMUST00000131842.1	protein_coding	chr3:28069514-28086686
chr3	28419938	28419980	+	(TG)n	Simple_repeat	Simple_repeat	chr3	28419942	28419944	+	ENSMUST00000175249.1,ENSMUSG00000092990.1	Mir466q	ENSMUSG00000092990.1	ENSMUST00000175249.1	miRNA	chr3:28419943-28420018
chr3	28538201	28538303	+	(TG)n	Simple_repeat	Simple_repeat	chr3	28538277	28538279	+	ENSMUST00000193721.1,ENSMUSG00000027692.16	Tnik	ENSMUSG00000027692.16	ENSMUST00000193721.1	protein_coding	chr3:28538278-28540092
chr3	28781256	28781293	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	28781275	28781277	+	ENSMUST00000060500.8,ENSMUSG00000050192.8	Eif5a2	ENSMUSG00000050192.8	ENSMUST00000060500.8	protein_coding	chr3:28781276-28798846
chr3	28852734	28855919	-	MuRRS4-int	LTR	ERV1	chr3	28854256	28854258	-	ENSMUST00000192066.1,ENSMUSG00000104275.1	Gm37867	ENSMUSG00000104275.1	ENSMUST00000192066.1	lincRNA	chr3:28852033-28854257
chr3	28875634	28883172	+	IAPLTR3-int	LTR	ERVK	chr3	28879811	28879813	+	ENSMUST00000195470.1,ENSMUSG00000102482.1	Gm37924	ENSMUSG00000102482.1	ENSMUST00000195470.1	TEC	chr3:28879812-28883458
chr3	29174821	29174870	+	(CA)n	Simple_repeat	Simple_repeat	chr3	29174837	29174839	+	ENSMUST00000192669.1,ENSMUSG00000103992.1	Gm38029	ENSMUSG00000103992.1	ENSMUST00000192669.1	TEC	chr3:29174838-29176927
chr3	29636572	29636831	-	L1M3e	LINE	L1	chr3	29636743	29636745	+	ENSMUST00000184317.1,ENSMUSG00000098315.1	Mir21b	ENSMUSG00000098315.1	ENSMUST00000184317.1	miRNA	chr3:29636744-29636851
chr3	30013482	30013527	+	(TG)n	Simple_repeat	Simple_repeat	chr3	30013504	30013506	-	ENSMUST00000108270.9,ENSMUSG00000027684.16	Mecom	ENSMUSG00000027684.16	ENSMUST00000108270.9	protein_coding	chr3:29951306-30013505
chr3	30509480	30509699	+	IMPB_01	Satellite	Satellite	chr3	30509513	30509515	-	ENSMUST00000173899.7,ENSMUSG00000027684.16	Mecom	ENSMUSG00000027684.16	ENSMUST00000173899.7	protein_coding	chr3:29963074-30509514
chr3	30509480	30509699	+	IMPB_01	Satellite	Satellite	chr3	30509486	30509488	-	ENSMUST00000173022.1,ENSMUSG00000027684.16	Mecom	ENSMUSG00000027684.16	ENSMUST00000173022.1	protein_coding	chr3:30236569-30509487
chr3	30564055	30564547	-	MT2_Mm	LTR	ERVL	chr3	30564242	30564244	-	ENSMUST00000191792.1,ENSMUSG00000102256.1	Gm38258	ENSMUSG00000102256.1	ENSMUST00000191792.1	lincRNA	chr3:30552697-30564243
chr3	30644424	30644790	-	MTD	LTR	ERVL-MaLR	chr3	30644506	30644508	+	ENSMUST00000108267.7,ENSMUSG00000027703.16	Lrriq4	ENSMUSG00000027703.16	ENSMUST00000108267.7	protein_coding	chr3:30644507-30672431
chr3	30957630	30957801	+	B3	SINE	B2	chr3	30957637	30957639	-	ENSMUST00000194340.1,ENSMUSG00000102369.1	9530022L04Rik	ENSMUSG00000102369.1	ENSMUST00000194340.1	TEC	chr3:30957329-30957638
chr3	31004959	31005443	-	L1_Rod	LINE	L1	chr3	31005192	31005194	+	ENSMUST00000130238.1,ENSMUSG00000037643.14	Prkci	ENSMUSG00000037643.14	ENSMUST00000130238.1	protein_coding	chr3:31005193-31034513
chr3	31031616	31031824	-	MTD	LTR	ERVL-MaLR	chr3	31031721	31031723	+	ENSMUST00000123971.7,ENSMUSG00000037643.14	Prkci	ENSMUSG00000037643.14	ENSMUST00000123971.7	protein_coding	chr3:31031722-31039397
chr3	31095098	31095236	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	31095124	31095126	+	ENSMUST00000117728.7,ENSMUSG00000027660.16	Skil	ENSMUSG00000027660.16	ENSMUST00000117728.7	protein_coding	chr3:31095125-31119280
chr3	31258296	31258625	-	ORR1E	LTR	ERVL-MaLR	chr3	31258393	31258395	-	ENSMUST00000108245.1,ENSMUSG00000069072.9	Slc7a14	ENSMUSG00000069072.9	ENSMUST00000108245.1	protein_coding	chr3:31222720-31258394
chr3	31340811	31341205	+	MTA_Mm	LTR	ERVL-MaLR	chr3	31341011	31341013	+	ENSMUST00000193926.1,ENSMUSG00000103998.1	Gm38025	ENSMUSG00000103998.1	ENSMUST00000193926.1	lincRNA	chr3:31341012-31345280
chr3	32365678	32365699	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	32365677	32365679	-	ENSMUST00000029199.10,ENSMUSG00000027663.12	Zmat3	ENSMUSG00000027663.12	ENSMUST00000029199.10	protein_coding	chr3:32334792-32365678
chr3	32372896	32373028	+	B1_Mur1	SINE	Alu	chr3	32372988	32372990	-	ENSMUST00000191961.1,ENSMUSG00000102825.1	Gm36990	ENSMUSG00000102825.1	ENSMUST00000191961.1	TEC	chr3:32371578-32372989
chr3	32510610	32510677	+	G-rich	Low_complexity	Low_complexity	chr3	32510663	32510665	+	ENSMUST00000193119.5,ENSMUSG00000027667.13	Zfp639	ENSMUSG00000027667.13	ENSMUST00000193119.5	protein_coding	chr3:32510664-32519566
chr3	32512120	32512252	-	B1_Mus1	SINE	Alu	chr3	32512177	32512179	+	ENSMUST00000194126.5,ENSMUSG00000027667.13	Zfp639	ENSMUSG00000027667.13	ENSMUST00000194126.5	protein_coding	chr3:32512178-32519629
chr3	32512147	32512268	-	MT2B	LTR	ERVL	chr3	32512177	32512179	+	ENSMUST00000194126.5,ENSMUSG00000027667.13	Zfp639	ENSMUSG00000027667.13	ENSMUST00000194126.5	protein_coding	chr3:32512178-32519629
chr3	32531554	32531665	-	PB1	SINE	Alu	chr3	32531553	32531555	+	ENSMUST00000118286.7,ENSMUSG00000027668.13	Mfn1	ENSMUSG00000027668.13	ENSMUST00000118286.7	protein_coding	chr3:32531554-32577353
chr3	32616581	32616604	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr3	32616584	32616586	-	ENSMUST00000155737.7,ENSMUSG00000027669.14	Gnb4	ENSMUSG00000027669.14	ENSMUST00000155737.7	protein_coding	chr3:32580332-32616585
chr3	32708510	32708578	+	C-rich	Low_complexity	Low_complexity	chr3	32708549	32708551	+	ENSMUST00000194226.1,ENSMUSG00000027671.14	Actl6a	ENSMUSG00000027671.14	ENSMUST00000194226.1	protein_coding	chr3:32708550-32710006
chr3	32722011	32722187	+	B2_Mm1t	SINE	B2	chr3	32722088	32722090	-	ENSMUST00000194497.1,ENSMUSG00000103590.1	Gm37353	ENSMUSG00000103590.1	ENSMUST00000194497.1	TEC	chr3:32721777-32722089
chr3	32741587	32741721	+	B3	SINE	B2	chr3	32741594	32741596	+	ENSMUST00000139593.7,ENSMUSG00000027673.12	Ndufb5	ENSMUSG00000027673.12	ENSMUST00000139593.7	protein_coding	chr3:32741595-32751102
chr3	33011957	33012024	+	U4	snRNA	snRNA	chr3	33011957	33011959	+	ENSMUST00000122716.1,ENSMUSG00000084665.1	Gm23214	ENSMUSG00000084665.1	ENSMUST00000122716.1	snRNA	chr3:33011958-33012114
chr3	33143243	33143332	+	GC_rich	Low_complexity	Low_complexity	chr3	33143246	33143248	-	ENSMUST00000108219.2,ENSMUSG00000027674.16	Pex5l	ENSMUSG00000027674.16	ENSMUST00000108219.2	protein_coding	chr3:32954337-33143247
chr3	33283033	33285702	+	RLTR44-int	LTR	ERVK	chr3	33283117	33283119	+	ENSMUST00000195487.1,ENSMUSG00000104384.1	Gm37031	ENSMUSG00000104384.1	ENSMUST00000195487.1	TEC	chr3:33283118-33285647
chr3	33618968	33624989	+	L1Md_A	LINE	L1	chr3	33621607	33621609	+	ENSMUST00000195812.1,ENSMUSG00000103423.1	Gm5845	ENSMUSG00000103423.1	ENSMUST00000195812.1	processed_pseudogene	chr3:33621608-33622403
chr3	33759470	33759806	-	LTRIS6	LTR	ERV1	chr3	33759615	33759617	-	ENSMUST00000197116.1,ENSMUSG00000104588.1	Gm43666	ENSMUSG00000104588.1	ENSMUST00000197116.1	lincRNA	chr3:33703355-33759616
chr3	34055256	34055435	-	B3	SINE	B2	chr3	34055428	34055430	-	ENSMUST00000198616.1,ENSMUSG00000105135.1	Gm43667	ENSMUSG00000105135.1	ENSMUST00000198616.1	TEC	chr3:34054335-34055429
chr3	34560262	34560337	+	A-rich	Low_complexity	Low_complexity	chr3	34560327	34560329	+	ENSMUST00000200414.4,ENSMUSG00000105265.4	Sox2ot	ENSMUSG00000105265.4	ENSMUST00000200414.4	processed_transcript	chr3:34560328-34675854
chr3	34602179	34602299	+	L1M5	LINE	L1	chr3	34602247	34602249	-	ENSMUST00000199244.1,ENSMUSG00000105222.1	Gm42205	ENSMUSG00000105222.1	ENSMUST00000199244.1	lincRNA	chr3:34598519-34602248
chr3	34638233	34638302	+	(TC)n	Simple_repeat	Simple_repeat	chr3	34638251	34638253	+	ENSMUST00000199171.4,ENSMUSG00000105265.4	Sox2ot	ENSMUSG00000105265.4	ENSMUST00000199171.4	processed_transcript	chr3:34638252-34680851
chr3	34638233	34638302	+	(TC)n	Simple_repeat	Simple_repeat	chr3	34638296	34638298	+	ENSMUST00000200092.1,ENSMUSG00000105265.4	Sox2ot	ENSMUSG00000105265.4	ENSMUST00000200092.1	processed_transcript	chr3:34638297-34680814
chr3	34650307	34650415	+	GC_rich	Low_complexity	Low_complexity	chr3	34650404	34650406	+	ENSMUST00000099151.5,ENSMUSG00000074637.7	Sox2	ENSMUSG00000074637.7	ENSMUST00000099151.5	protein_coding	chr3:34650405-34652461
chr3	34716475	34716886	-	MTB_Mm	LTR	ERVL-MaLR	chr3	34716659	34716661	-	ENSMUST00000196308.4,ENSMUSG00000105153.4	Gm3143	ENSMUSG00000105153.4	ENSMUST00000196308.4	lincRNA	chr3:34699640-34716660
chr3	34716475	34716886	-	MTB_Mm	LTR	ERVL-MaLR	chr3	34716661	34716663	-	ENSMUST00000198364.1,ENSMUSG00000105153.4	Gm3143	ENSMUSG00000105153.4	ENSMUST00000198364.1	lincRNA	chr3:34709623-34716662
chr3	35275280	35276888	-	ORR1B1-int	LTR	ERVL-MaLR	chr3	35276130	35276132	-	ENSMUST00000198307.1,ENSMUSG00000105651.1	1700017M07Rik	ENSMUSG00000105651.1	ENSMUST00000198307.1	lincRNA	chr3:35256462-35276131
chr3	35325613	35325704	+	B1_Mur4	SINE	Alu	chr3	35325613	35325615	+	ENSMUST00000177270.1,ENSMUSG00000093499.1	Gm25442	ENSMUSG00000093499.1	ENSMUST00000177270.1	miRNA	chr3:35325614-35325705
chr3	35413573	35413890	+	ERVB7_1-LTR_MM	LTR	ERVK	chr3	35413832	35413834	+	ENSMUST00000197222.1,ENSMUSG00000106512.1	Gm43078	ENSMUSG00000106512.1	ENSMUST00000197222.1	TEC	chr3:35413833-35414000
chr3	35630192	35632750	-	ETnERV2-int	LTR	ERVK	chr3	35630963	35630965	-	ENSMUST00000199182.1,ENSMUSG00000105662.4	Gm6639	ENSMUSG00000105662.4	ENSMUST00000199182.1	lincRNA	chr3:35618814-35630964
chr3	35735372	35735477	+	U6	snRNA	snRNA	chr3	35735372	35735374	+	ENSMUST00000082900.1,ENSMUSG00000064834.1	Gm25696	ENSMUSG00000064834.1	ENSMUST00000082900.1	snRNA	chr3:35735373-35735477
chr3	35845244	35845518	-	B4A	SINE	B4	chr3	35845341	35845343	+	ENSMUST00000200130.1,ENSMUSG00000104897.1	Gm43203	ENSMUSG00000104897.1	ENSMUST00000200130.1	TEC	chr3:35845342-35845899
chr3	35909751	35909852	-	PB1D10	SINE	Alu	chr3	35909844	35909846	-	ENSMUST00000196261.1,ENSMUSG00000027708.14	Dcun1d1	ENSMUSG00000027708.14	ENSMUST00000196261.1	protein_coding	chr3:35897522-35909845
chr3	35933031	35933055	+	GC_rich	Low_complexity	Low_complexity	chr3	35933044	35933046	+	ENSMUST00000122858.5,ENSMUSG00000085655.5	Gm15952	ENSMUSG00000085655.5	ENSMUST00000122858.5	antisense	chr3:35933045-35942717
chr3	35933031	35933055	+	GC_rich	Low_complexity	Low_complexity	chr3	35933044	35933046	+	ENSMUST00000196662.1,ENSMUSG00000085655.5	Gm15952	ENSMUSG00000085655.5	ENSMUST00000196662.1	antisense	chr3:35933045-35990840
chr3	35976525	35976614	+	PB1	SINE	Alu	chr3	35976586	35976588	-	ENSMUST00000197580.1,ENSMUSG00000027709.9	Mccc1	ENSMUSG00000027709.9	ENSMUST00000197580.1	protein_coding	chr3:35975193-35976587
chr3	35999839	35999987	-	MIRb	SINE	MIR	chr3	35999912	35999914	+	ENSMUST00000144118.7,ENSMUSG00000086392.9	Mccc1os	ENSMUSG00000086392.9	ENSMUST00000144118.7	antisense	chr3:35999913-36008828
chr3	36071734	36073319	-	L1Md_F2	LINE	L1	chr3	36072178	36072180	+	ENSMUST00000197344.1,ENSMUSG00000027710.14	Acad9	ENSMUSG00000027710.14	ENSMUST00000197344.1	protein_coding	chr3:36072179-36074240
chr3	36095785	36097422	-	RMER16-int	LTR	ERVK	chr3	36097176	36097178	+	ENSMUST00000198622.1,ENSMUSG00000105419.1	Gm43205	ENSMUSG00000105419.1	ENSMUST00000198622.1	TEC	chr3:36097177-36099144
chr3	36159513	36159653	+	MurSatRep1	Unknown	Unknown	chr3	36159521	36159523	+	ENSMUST00000165956.2,ENSMUSG00000033883.11	D3Ertd254e	ENSMUSG00000033883.11	ENSMUST00000165956.2	protein_coding	chr3:36159522-36170335
chr3	36274532	36274935	-	RLTR41B	LTR	ERV1	chr3	36274659	36274661	-	ENSMUST00000198215.1,ENSMUSG00000106140.1	Gm42208	ENSMUSG00000106140.1	ENSMUST00000198215.1	lincRNA	chr3:36272327-36274660
chr3	36420118	36421579	+	ORR1A2-int	LTR	ERVL-MaLR	chr3	36421575	36421577	+	ENSMUST00000200194.1,ENSMUSG00000105792.1	Gm17887	ENSMUSG00000105792.1	ENSMUST00000200194.1	processed_pseudogene	chr3:36421576-36422122
chr3	36506609	36507014	-	MTB_Mm	LTR	ERVL-MaLR	chr3	36506808	36506810	-	ENSMUST00000140203.1,ENSMUSG00000085320.1	Gm11548	ENSMUSG00000085320.1	ENSMUST00000140203.1	lincRNA	chr3:36499804-36506809
chr3	36577280	36577466	+	B2_Mm1a	SINE	B2	chr3	36577284	36577286	-	ENSMUST00000199136.1,ENSMUSG00000037325.10	Bbs7	ENSMUSG00000037325.10	ENSMUST00000199136.1	protein_coding	chr3:36575777-36577285
chr3	37017558	37019800	-	L1_Mus3	LINE	L1	chr3	37018855	37018857	+	ENSMUST00000140480.1,ENSMUSG00000037270.18	4932438A13Rik	ENSMUSG00000037270.18	ENSMUST00000140480.1	protein_coding	chr3:37018856-37023854
chr3	37020178	37020209	+	AT_rich	Low_complexity	Low_complexity	chr3	37020178	37020180	+	ENSMUST00000195933.1,ENSMUSG00000037270.18	4932438A13Rik	ENSMUSG00000037270.18	ENSMUST00000195933.1	protein_coding	chr3:37020179-37024084
chr3	37024241	37024439	+	B3	SINE	B2	chr3	37024425	37024427	+	ENSMUST00000148698.1,ENSMUSG00000037270.18	4932438A13Rik	ENSMUSG00000037270.18	ENSMUST00000148698.1	protein_coding	chr3:37024426-37037840
chr3	37256584	37257101	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	37256892	37256894	-	ENSMUST00000180244.1,ENSMUSG00000094007.1	Gm24169	ENSMUSG00000094007.1	ENSMUST00000180244.1	miRNA	chr3:37256784-37256893
chr3	37395004	37395337	-	RLTR10B2	LTR	ERVK	chr3	37395100	37395102	-	ENSMUST00000198438.1,ENSMUSG00000105134.1	Gm42923	ENSMUSG00000105134.1	ENSMUST00000198438.1	TEC	chr3:37392206-37395101
chr3	37488750	37488891	+	L1_Mus1	LINE	L1	chr3	37488826	37488828	+	ENSMUST00000198333.1,ENSMUSG00000106166.1	Gm43484	ENSMUSG00000106166.1	ENSMUST00000198333.1	TEC	chr3:37488827-37494792
chr3	37613621	37613986	+	MTEb	LTR	ERVL-MaLR	chr3	37613912	37613914	+	ENSMUST00000144981.7,ENSMUSG00000085677.7	4930594O21Rik	ENSMUSG00000085677.7	ENSMUST00000144981.7	lincRNA	chr3:37613913-37615276
chr3	37613621	37613986	+	MTEb	LTR	ERVL-MaLR	chr3	37613922	37613924	+	ENSMUST00000129750.1,ENSMUSG00000085677.7	4930594O21Rik	ENSMUSG00000085677.7	ENSMUST00000129750.1	lincRNA	chr3:37613923-37614826
chr3	37708011	37708673	+	RLTR26B_MM	LTR	ERVK	chr3	37708020	37708022	+	ENSMUST00000197710.1,ENSMUSG00000104935.1	Gm43414	ENSMUSG00000104935.1	ENSMUST00000197710.1	TEC	chr3:37708021-37711208
chr3	38267962	38268084	-	B1_Mm	SINE	Alu	chr3	38268083	38268085	-	ENSMUST00000175245.2,ENSMUSG00000092986.2	Gm25574	ENSMUSG00000092986.2	ENSMUST00000175245.2	misc_RNA	chr3:38267836-38268084
chr3	38484714	38484838	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	38484814	38484816	-	ENSMUST00000127837.1,ENSMUSG00000044864.16	Ankrd50	ENSMUSG00000044864.16	ENSMUST00000127837.1	protein_coding	chr3:38483251-38484815
chr3	39635963	39636081	-	5S	rRNA	rRNA	chr3	39636058	39636060	+	ENSMUST00000201317.1,ENSMUSG00000106786.1	Gm42781	ENSMUSG00000106786.1	ENSMUST00000201317.1	TEC	chr3:39636059-39638777
chr3	39666287	39666448	+	U1	snRNA	snRNA	chr3	39666287	39666289	+	ENSMUST00000084011.1,ENSMUSG00000065945.1	Gm23796	ENSMUSG00000065945.1	ENSMUST00000084011.1	snRNA	chr3:39666288-39666447
chr3	39820743	39820774	+	(CTG)n	Simple_repeat	Simple_repeat	chr3	39820759	39820761	-	ENSMUST00000202357.1,ENSMUSG00000106846.1	Gm42786	ENSMUSG00000106846.1	ENSMUST00000202357.1	processed_pseudogene	chr3:39820481-39820760
chr3	39821742	39827092	+	L1Md_F	LINE	L1	chr3	39823576	39823578	+	ENSMUST00000202316.1,ENSMUSG00000106948.1	Gm42785	ENSMUSG00000106948.1	ENSMUST00000202316.1	processed_pseudogene	chr3:39823577-39827411
chr3	40518817	40518863	+	(TG)n	Simple_repeat	Simple_repeat	chr3	40518817	40518819	+	ENSMUST00000175150.1,ENSMUSG00000092891.1	Gm23810	ENSMUSG00000092891.1	ENSMUST00000175150.1	miRNA	chr3:40518818-40518891
chr3	40531201	40531339	-	B1_Mur1	SINE	Alu	chr3	40531285	40531287	+	ENSMUST00000061590.5,ENSMUSG00000060798.7	Intu	ENSMUSG00000060798.7	ENSMUST00000061590.5	protein_coding	chr3:40531286-40654616
chr3	40862127	40862373	-	IAPEz-int	LTR	ERVK	chr3	40862164	40862166	+	ENSMUST00000203535.1,ENSMUSG00000107741.2	Gm2011	ENSMUSG00000107741.2	ENSMUST00000203535.1	transcribed_unprocessed_pseudogene	chr3:40862165-40869962
chr3	40865027	40865104	+	MIRb	SINE	MIR	chr3	40865052	40865054	-	ENSMUST00000203819.1,ENSMUSG00000107524.1	Gm44136	ENSMUSG00000107524.1	ENSMUST00000203819.1	TEC	chr3:40863948-40865053
chr3	41002386	41002658	-	L1MC4	LINE	L1	chr3	41002433	41002435	+	ENSMUST00000198804.1,ENSMUSG00000105517.1	Gm42436	ENSMUSG00000105517.1	ENSMUST00000198804.1	TEC	chr3:41002434-41006089
chr3	41021913	41022032	-	ORR1F	LTR	ERVL-MaLR	chr3	41021938	41021940	+	ENSMUST00000065411.12,ENSMUSG00000025762.15	Larp1b	ENSMUSG00000025762.15	ENSMUST00000065411.12	protein_coding	chr3:41021939-41040234
chr3	41492880	41493378	-	RLTR20C	LTR	ERVK	chr3	41493189	41493191	-	ENSMUST00000199155.1,ENSMUSG00000097639.2	Platr4	ENSMUSG00000097639.2	ENSMUST00000199155.1	lincRNA	chr3:41487679-41493190
chr3	41492880	41493378	-	RLTR20C	LTR	ERVK	chr3	41493191	41493193	-	ENSMUST00000181833.1,ENSMUSG00000097639.2	Platr4	ENSMUSG00000097639.2	ENSMUST00000181833.1	lincRNA	chr3:41488804-41493192
chr3	41527997	41528561	-	RLTR31B_Mm	LTR	ERVK	chr3	41528443	41528445	-	ENSMUST00000198272.1,ENSMUSG00000106223.1	2400006E01Rik	ENSMUSG00000106223.1	ENSMUST00000198272.1	lincRNA	chr3:41521247-41528444
chr3	41527997	41528561	-	RLTR31B_Mm	LTR	ERVK	chr3	41528473	41528475	-	ENSMUST00000199633.1,ENSMUSG00000106223.1	2400006E01Rik	ENSMUSG00000106223.1	ENSMUST00000199633.1	lincRNA	chr3:41522204-41528474
chr3	41602416	41602546	-	B1_Mur4	SINE	Alu	chr3	41602429	41602431	+	ENSMUST00000192300.1,ENSMUSG00000025764.14	Jade1	ENSMUSG00000025764.14	ENSMUST00000192300.1	protein_coding	chr3:41602430-41604807
chr3	41742701	41742731	+	AT_rich	Low_complexity	Low_complexity	chr3	41742724	41742726	+	ENSMUST00000026868.12,ENSMUSG00000025766.14	D3Ertd751e	ENSMUSG00000025766.14	ENSMUST00000026868.12	protein_coding	chr3:41742725-41753784
chr3	41773058	41773192	-	B1F2	SINE	Alu	chr3	41773180	41773182	+	ENSMUST00000192254.1,ENSMUSG00000103952.1	Gm37268	ENSMUSG00000103952.1	ENSMUST00000192254.1	TEC	chr3:41773181-41775794
chr3	43546971	43547367	+	MTA_Mm	LTR	ERVL-MaLR	chr3	43547172	43547174	+	ENSMUST00000192632.1,ENSMUSG00000104303.1	Gm36976	ENSMUSG00000104303.1	ENSMUST00000192632.1	TEC	chr3:43547173-43548282
chr3	43954236	43959444	+	L1Md_A	LINE	L1	chr3	43955720	43955722	+	ENSMUST00000193249.1,ENSMUSG00000103148.1	Gm37746	ENSMUSG00000103148.1	ENSMUST00000193249.1	TEC	chr3:43955721-43955918
chr3	44659175	44660030	-	RLTR13A1	LTR	ERVK	chr3	44659901	44659903	+	ENSMUST00000192085.1,ENSMUSG00000104051.1	Gm38128	ENSMUSG00000104051.1	ENSMUST00000192085.1	TEC	chr3:44659902-44663151
chr3	44983149	44983201	+	(TA)n	Simple_repeat	Simple_repeat	chr3	44983199	44983201	+	ENSMUST00000157910.1,ENSMUSG00000088535.1	Gm24997	ENSMUSG00000088535.1	ENSMUST00000157910.1	snRNA	chr3:44983200-44983304
chr3	45154387	45161622	-	L1Md_T	LINE	L1	chr3	45160694	45160696	+	ENSMUST00000184721.1,ENSMUSG00000099285.1	Gm27989	ENSMUSG00000099285.1	ENSMUST00000184721.1	miRNA	chr3:45160695-45160801
chr3	45274664	45275009	-	MLT1J	LTR	ERVL-MaLR	chr3	45274966	45274968	-	ENSMUST00000192347.1,ENSMUSG00000103477.1	5930409G06Rik	ENSMUSG00000103477.1	ENSMUST00000192347.1	TEC	chr3:45273424-45274967
chr3	45438343	45438413	+	T-rich	Low_complexity	Low_complexity	chr3	45438379	45438381	+	ENSMUST00000193945.1,ENSMUSG00000103713.1	Gm2136	ENSMUSG00000103713.1	ENSMUST00000193945.1	TEC	chr3:45438380-45440956
chr3	45439150	45440157	+	RMER17B	LTR	ERVK	chr3	45439309	45439311	-	ENSMUST00000186818.2,ENSMUSG00000100799.2	1700027H10Rik	ENSMUSG00000100799.2	ENSMUST00000186818.2	antisense	chr3:45416584-45439310
chr3	45978397	45978591	-	Lx2A	LINE	L1	chr3	45978577	45978579	+	ENSMUST00000158959.1,ENSMUSG00000089584.1	Gm23337	ENSMUSG00000089584.1	ENSMUST00000158959.1	snRNA	chr3:45978578-45978695
chr3	46413289	46413415	+	L1_Mus3	LINE	L1	chr3	46413401	46413403	+	ENSMUST00000194982.1,ENSMUSG00000104511.1	Gm18843	ENSMUSG00000104511.1	ENSMUST00000194982.1	processed_pseudogene	chr3:46413402-46414120
chr3	46900381	46900994	+	RLTR26B_MM	LTR	ERVK	chr3	46900781	46900783	-	ENSMUST00000183392.1,ENSMUSG00000098417.1	Mir6379	ENSMUSG00000098417.1	ENSMUST00000183392.1	miRNA	chr3:46900668-46900782
chr3	48760914	48761061	+	L1_Mus2	LINE	L1	chr3	48760948	48760950	-	ENSMUST00000193580.1,ENSMUSG00000102181.1	Gm37190	ENSMUSG00000102181.1	ENSMUST00000193580.1	lincRNA	chr3:48748510-48760949
chr3	49062235	49062539	+	RLTR20C2_MM	LTR	ERVK	chr3	49062377	49062379	+	ENSMUST00000194963.1,ENSMUSG00000102263.1	Gm31415	ENSMUSG00000102263.1	ENSMUST00000194963.1	lincRNA	chr3:49062378-49085259
chr3	49135732	49138111	+	ERVB4_1B-I_MM-int	LTR	ERVK	chr3	49137462	49137464	+	ENSMUST00000194626.1,ENSMUSG00000104186.1	Gm37819	ENSMUSG00000104186.1	ENSMUST00000194626.1	TEC	chr3:49137463-49138527
chr3	49208060	49208635	+	L1Md_F2	LINE	L1	chr3	49208067	49208069	-	ENSMUST00000192779.1,ENSMUSG00000103027.1	Gm37684	ENSMUSG00000103027.1	ENSMUST00000192779.1	processed_pseudogene	chr3:49207714-49208068
chr3	49604188	49604253	-	MER130	Unknown	Unknown	chr3	49604226	49604228	+	ENSMUST00000195829.1,ENSMUSG00000103249.1	Gm38088	ENSMUSG00000103249.1	ENSMUST00000195829.1	processed_pseudogene	chr3:49604227-49604467
chr3	49658762	49658869	+	U6	snRNA	snRNA	chr3	49658762	49658764	+	ENSMUST00000083447.1,ENSMUSG00000065381.1	Gm23096	ENSMUSG00000065381.1	ENSMUST00000083447.1	snRNA	chr3:49658763-49658869
chr3	50404231	50404351	-	IMPB_01	Satellite	Satellite	chr3	50404282	50404284	-	ENSMUST00000193524.1,ENSMUSG00000103907.1	Gm37498	ENSMUSG00000103907.1	ENSMUST00000193524.1	TEC	chr3:50400282-50404283
chr3	50576023	50576955	-	L1_Mus4	LINE	L1	chr3	50576516	50576518	-	ENSMUST00000192543.1,ENSMUSG00000102895.1	5830415G21Rik	ENSMUSG00000102895.1	ENSMUST00000192543.1	TEC	chr3:50575186-50576517
chr3	50683362	50683716	-	MTE2b	LTR	ERVL-MaLR	chr3	50683400	50683402	-	ENSMUST00000193929.1,ENSMUSG00000104281.1	Gm37461	ENSMUSG00000104281.1	ENSMUST00000193929.1	TEC	chr3:50679698-50683401
chr3	51102116	51104835	+	IAPEy-int	LTR	ERVK	chr3	51103659	51103661	+	ENSMUST00000194318.1,ENSMUSG00000103464.1	Gm38246	ENSMUSG00000103464.1	ENSMUST00000194318.1	lincRNA	chr3:51103660-51105170
chr3	51231913	51232132	-	B3	SINE	B2	chr3	51231916	51231918	+	ENSMUST00000195382.1,ENSMUSG00000103313.1	Gm38357	ENSMUSG00000103313.1	ENSMUST00000195382.1	TEC	chr3:51231917-51234380
chr3	51239967	51240386	+	IAPLTR1_Mm	LTR	ERVK	chr3	51240205	51240207	+	ENSMUST00000144826.1,ENSMUSG00000023087.15	Noct	ENSMUSG00000023087.15	ENSMUST00000144826.1	protein_coding	chr3:51240206-51251624
chr3	51241610	51244882	+	IAPEz-int	LTR	ERVK	chr3	51243407	51243409	+	ENSMUST00000193018.1,ENSMUSG00000023087.15	Noct	ENSMUSG00000023087.15	ENSMUST00000193018.1	protein_coding	chr3:51243408-51249786
chr3	51277431	51277462	+	GC_rich	Low_complexity	Low_complexity	chr3	51277443	51277445	-	ENSMUST00000156983.2,ENSMUSG00000037174.18	Elf2	ENSMUSG00000037174.18	ENSMUST00000156983.2	protein_coding	chr3:51265050-51277444
chr3	51297175	51297228	+	(TATG)n	Simple_repeat	Simple_repeat	chr3	51297178	51297180	+	ENSMUST00000104232.1,ENSMUSG00000077420.1	Gm24282	ENSMUSG00000077420.1	ENSMUST00000104232.1	miRNA	chr3:51297179-51297244
chr3	51423525	51423677	+	B1_Mm	SINE	Alu	chr3	51423612	51423614	+	ENSMUST00000191756.1,ENSMUSG00000103191.1	Gm37646	ENSMUSG00000103191.1	ENSMUST00000191756.1	TEC	chr3:51423613-51423723
chr3	51440769	51440948	-	B2_Mm1a	SINE	B2	chr3	51440916	51440918	+	ENSMUST00000195430.1,ENSMUSG00000063273.11	Naa15	ENSMUSG00000063273.11	ENSMUST00000195430.1	protein_coding	chr3:51440917-51443891
chr3	51460720	51460988	-	ORR1C2	LTR	ERVL-MaLR	chr3	51460739	51460741	+	ENSMUST00000194685.1,ENSMUSG00000063273.11	Naa15	ENSMUSG00000063273.11	ENSMUST00000194685.1	protein_coding	chr3:51460740-51463058
chr3	51537032	51537138	+	PB1D10	SINE	Alu	chr3	51537127	51537129	-	ENSMUST00000161755.2,ENSMUSG00000037111.9	Setd7	ENSMUSG00000037111.9	ENSMUST00000161755.2	protein_coding	chr3:51535501-51537128
chr3	51559628	51559653	+	(A)n	Simple_repeat	Simple_repeat	chr3	51559651	51559653	-	ENSMUST00000192083.1,ENSMUSG00000102466.1	Gm38200	ENSMUSG00000102466.1	ENSMUST00000192083.1	TEC	chr3:51557542-51559652
chr3	51671375	51671683	-	ORR1A2	LTR	ERVL-MaLR	chr3	51671462	51671464	+	ENSMUST00000159400.7,ENSMUSG00000074604.9	Mgst2	ENSMUSG00000074604.9	ENSMUST00000159400.7	protein_coding	chr3:51671463-51682672
chr3	51671683	51671927	-	ORR1D1	LTR	ERVL-MaLR	chr3	51671914	51671916	+	ENSMUST00000162125.7,ENSMUSG00000074604.9	Mgst2	ENSMUSG00000074604.9	ENSMUST00000162125.7	protein_coding	chr3:51671915-51682519
chr3	51675115	51675151	+	(T)n	Simple_repeat	Simple_repeat	chr3	51675135	51675137	+	ENSMUST00000161230.2,ENSMUSG00000074604.9	Mgst2	ENSMUSG00000074604.9	ENSMUST00000161230.2	protein_coding	chr3:51675136-51682674
chr3	51681557	51681745	-	L1M4	LINE	L1	chr3	51681621	51681623	+	ENSMUST00000195423.1,ENSMUSG00000074604.9	Mgst2	ENSMUSG00000074604.9	ENSMUST00000195423.1	protein_coding	chr3:51681622-51682677
chr3	51693770	51693795	+	(A)n	Simple_repeat	Simple_repeat	chr3	51693770	51693772	+	ENSMUST00000099104.2,ENSMUSG00000074603.3	Gm10729	ENSMUSG00000074603.3	ENSMUST00000099104.2	TEC	chr3:51693771-51695090
chr3	51762062	51762108	+	(CA)n	Simple_repeat	Simple_repeat	chr3	51762087	51762089	-	ENSMUST00000194588.1,ENSMUSG00000102732.1	Gm37342	ENSMUSG00000102732.1	ENSMUST00000194588.1	TEC	chr3:51757124-51762088
chr3	51828911	51829015	+	5S	rRNA	rRNA	chr3	51828911	51828913	+	ENSMUST00000083136.1,ENSMUSG00000065070.1	n-R5s196	ENSMUSG00000065070.1	ENSMUST00000083136.1	rRNA	chr3:51828912-51829028
chr3	51875810	51875845	+	(A)n	Simple_repeat	Simple_repeat	chr3	51875835	51875837	-	ENSMUST00000192303.1,ENSMUSG00000102620.1	Gm37675	ENSMUSG00000102620.1	ENSMUST00000192303.1	TEC	chr3:51872990-51875836
chr3	51908769	51908972	-	B3	SINE	B2	chr3	51908815	51908817	-	ENSMUST00000194665.1,ENSMUSG00000103701.1	Gm10728	ENSMUSG00000103701.1	ENSMUST00000194665.1	TEC	chr3:51906986-51908816
chr3	51908769	51908972	-	B3	SINE	B2	chr3	51908815	51908817	-	ENSMUST00000194292.1,ENSMUSG00000103701.1	Gm10728	ENSMUSG00000103701.1	ENSMUST00000194292.1	TEC	chr3:51906987-51908816
chr3	52064231	52064261	+	(A)n	Simple_repeat	Simple_repeat	chr3	52064243	52064245	-	ENSMUST00000194534.1,ENSMUSG00000104339.1	C130089K02Rik	ENSMUSG00000104339.1	ENSMUST00000194534.1	TEC	chr3:52057285-52064244
chr3	52186292	52186582	-	RLTR51A_Mm	LTR	ERVK?	chr3	52186572	52186574	+	ENSMUST00000193358.1,ENSMUSG00000104055.1	Gm38132	ENSMUSG00000104055.1	ENSMUST00000193358.1	processed_transcript	chr3:52186573-52187957
chr3	52221732	52223864	-	ORR1B1-int	LTR	ERVL-MaLR	chr3	52221996	52221998	-	ENSMUST00000193679.1,ENSMUSG00000103655.1	Gm37202	ENSMUSG00000103655.1	ENSMUST00000193679.1	lincRNA	chr3:52134047-52221997
chr3	52282208	52282241	+	(GGGGA)n	Simple_repeat	Simple_repeat	chr3	52282240	52282242	+	ENSMUST00000193915.1,ENSMUSG00000102844.1	Gm38034	ENSMUSG00000102844.1	ENSMUST00000193915.1	TEC	chr3:52282241-52284309
chr3	52722648	52722755	-	U6	snRNA	snRNA	chr3	52722754	52722756	-	ENSMUST00000083992.1,ENSMUSG00000065926.1	Gm22798	ENSMUSG00000065926.1	ENSMUST00000083992.1	snRNA	chr3:52722649-52722755
chr3	52739602	52739767	-	RSINE1	SINE	B4	chr3	52739715	52739717	+	ENSMUST00000193813.5,ENSMUSG00000102785.5	Gm2447	ENSMUSG00000102785.5	ENSMUST00000193813.5	lincRNA	chr3:52739716-52776656
chr3	52764570	52764694	+	MIR	SINE	MIR	chr3	52764598	52764600	+	ENSMUST00000191954.1,ENSMUSG00000102785.5	Gm2447	ENSMUSG00000102785.5	ENSMUST00000191954.1	lincRNA	chr3:52764599-52776654
chr3	53098994	53099024	+	T-rich	Low_complexity	Low_complexity	chr3	53098999	53099001	+	ENSMUST00000198178.1,ENSMUSG00000104735.1	C130075A20Rik	ENSMUSG00000104735.1	ENSMUST00000198178.1	TEC	chr3:53099000-53103175
chr3	53111698	53111805	+	B3	SINE	B2	chr3	53111714	53111716	-	ENSMUST00000196732.1,ENSMUSG00000104968.1	Gm43803	ENSMUSG00000104968.1	ENSMUST00000196732.1	antisense	chr3:53110413-53111715
chr3	53112156	53112368	-	B3	SINE	B2	chr3	53112165	53112167	+	ENSMUST00000198488.1,ENSMUSG00000105971.1	Gm43805	ENSMUSG00000105971.1	ENSMUST00000198488.1	TEC	chr3:53112166-53112989
chr3	53228931	53229455	+	MLTR14	LTR	ERV1	chr3	53229324	53229326	+	ENSMUST00000196913.1,ENSMUSG00000048332.13	Lhfp	ENSMUSG00000048332.13	ENSMUST00000196913.1	protein_coding	chr3:53229325-53232423
chr3	53508828	53508997	+	RMER17C	LTR	ERVK	chr3	53508927	53508929	+	ENSMUST00000198286.1,ENSMUSG00000105481.1	6430500D05Rik	ENSMUSG00000105481.1	ENSMUST00000198286.1	TEC	chr3:53508928-53510103
chr3	53924829	53925008	+	Tigger7	DNA	TcMar-Tigger	chr3	53924834	53924836	+	ENSMUST00000198762.1,ENSMUSG00000106577.1	Gm31026	ENSMUSG00000106577.1	ENSMUST00000198762.1	lincRNA	chr3:53924835-53943528
chr3	54733094	54733238	+	MIR	SINE	MIR	chr3	54733222	54733224	-	ENSMUST00000142377.1,ENSMUSG00000027752.15	Exosc8	ENSMUSG00000027752.15	ENSMUST00000142377.1	protein_coding	chr3:54732152-54733223
chr3	54734315	54734378	-	X3_LINE	LINE	RTE-BovB	chr3	54734336	54734338	-	ENSMUST00000140935.1,ENSMUSG00000027752.15	Exosc8	ENSMUSG00000027752.15	ENSMUST00000140935.1	protein_coding	chr3:54732142-54734337
chr3	54735521	54735553	+	GC_rich	Low_complexity	Low_complexity	chr3	54735538	54735540	+	ENSMUST00000044567.3,ENSMUSG00000036632.9	Alg5	ENSMUSG00000036632.9	ENSMUST00000044567.3	protein_coding	chr3:54735539-54749795
chr3	55055015	55055044	+	GC_rich	Low_complexity	Low_complexity	chr3	55055041	55055043	-	ENSMUST00000198320.4,ENSMUSG00000027793.6	Ccna1	ENSMUSG00000027793.6	ENSMUST00000198320.4	protein_coding	chr3:55045477-55055042
chr3	55055015	55055044	+	GC_rich	Low_complexity	Low_complexity	chr3	55055036	55055038	-	ENSMUST00000199352.1,ENSMUSG00000027793.6	Ccna1	ENSMUSG00000027793.6	ENSMUST00000199352.1	protein_coding	chr3:55050980-55055037
chr3	55162200	55162687	-	MT2_Mm	LTR	ERVL	chr3	55162433	55162435	-	ENSMUST00000116940.1,ENSMUSG00000080590.1	Gm22029	ENSMUSG00000080590.1	ENSMUST00000116940.1	miRNA	chr3:55162314-55162434
chr3	55305316	55305420	+	U6	snRNA	snRNA	chr3	55305316	55305318	+	ENSMUST00000082652.1,ENSMUSG00000064586.1	Gm25132	ENSMUSG00000064586.1	ENSMUST00000082652.1	snRNA	chr3:55305317-55305423
chr3	55548445	55548552	+	U6	snRNA	snRNA	chr3	55548445	55548447	+	ENSMUST00000082970.1,ENSMUSG00000064904.1	Gm25404	ENSMUSG00000064904.1	ENSMUST00000082970.1	snRNA	chr3:55548446-55548552
chr3	55578425	55585968	-	MMERGLN-int	LTR	ERV1	chr3	55582729	55582731	-	ENSMUST00000198856.1,ENSMUSG00000106334.1	Gm43549	ENSMUSG00000106334.1	ENSMUST00000198856.1	lincRNA	chr3:55578105-55582730
chr3	56017005	56017388	+	L1Md_F3	LINE	L1	chr3	56017167	56017169	-	ENSMUST00000200303.1,ENSMUSG00000104938.1	Gm42840	ENSMUSG00000104938.1	ENSMUST00000200303.1	TEC	chr3:56014918-56017168
chr3	56021097	56026392	-	L1Md_A	LINE	L1	chr3	56021177	56021179	-	ENSMUST00000197395.1,ENSMUSG00000027799.12	Nbea	ENSMUSG00000027799.12	ENSMUST00000197395.1	protein_coding	chr3:56018021-56021178
chr3	56167257	56167647	+	MLT2B4	LTR	ERVL	chr3	56167568	56167570	-	ENSMUST00000196328.1,ENSMUSG00000105293.1	Gm42843	ENSMUSG00000105293.1	ENSMUST00000196328.1	TEC	chr3:56163954-56167569
chr3	57248883	57249259	+	MLT1B	LTR	ERVL-MaLR	chr3	57249251	57249253	+	ENSMUST00000200484.1,ENSMUSG00000106286.1	Gm43424	ENSMUSG00000106286.1	ENSMUST00000200484.1	processed_pseudogene	chr3:57249252-57249504
chr3	57293650	57293794	+	B1_Mus1	SINE	Alu	chr3	57293702	57293704	-	ENSMUST00000196704.1,ENSMUSG00000027800.14	Tm4sf1	ENSMUSG00000027800.14	ENSMUST00000196704.1	protein_coding	chr3:57292819-57293703
chr3	57640809	57640837	+	AT_rich	Low_complexity	Low_complexity	chr3	57640836	57640838	-	ENSMUST00000198535.1,ENSMUSG00000104965.1	Gm43437	ENSMUSG00000104965.1	ENSMUST00000198535.1	TEC	chr3:57636883-57640837
chr3	57655567	57655750	-	B2_Mm2	SINE	B2	chr3	57655578	57655580	-	ENSMUST00000198619.1,ENSMUSG00000105389.1	BB187690	ENSMUSG00000105389.1	ENSMUST00000198619.1	TEC	chr3:57654404-57655579
chr3	57697197	57697676	-	RLTR11A2	LTR	ERVK	chr3	57697475	57697477	-	ENSMUST00000199989.1,ENSMUSG00000106635.1	Gm43098	ENSMUSG00000106635.1	ENSMUST00000199989.1	TEC	chr3:57696180-57697476
chr3	57800763	57801124	-	RLTR14	LTR	ERV1	chr3	57800804	57800806	+	ENSMUST00000197783.1,ENSMUSG00000036503.13	Rnf13	ENSMUSG00000036503.13	ENSMUST00000197783.1	protein_coding	chr3:57800805-57804677
chr3	57847139	57847164	+	GC_rich	Low_complexity	Low_complexity	chr3	57847144	57847146	-	ENSMUST00000119344.7,ENSMUSG00000027805.16	Pfn2	ENSMUSG00000027805.16	ENSMUST00000119344.7	protein_coding	chr3:57841905-57847145
chr3	57847526	57847595	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	57847548	57847550	-	ENSMUST00000120289.2,ENSMUSG00000027805.16	Pfn2	ENSMUSG00000027805.16	ENSMUST00000120289.2	protein_coding	chr3:57844661-57847549
chr3	57922089	57922187	-	U6	snRNA	snRNA	chr3	57922186	57922188	-	ENSMUST00000157945.1,ENSMUSG00000088570.1	Gm24531	ENSMUSG00000088570.1	ENSMUST00000157945.1	snRNA	chr3:57922088-57922187
chr3	58079625	58079844	+	Lx7	LINE	L1	chr3	58079715	58079717	+	ENSMUST00000197831.1,ENSMUSG00000105065.1	Gm42513	ENSMUSG00000105065.1	ENSMUST00000197831.1	TEC	chr3:58079716-58081834
chr3	58163809	58164590	+	LTR41B	LTR	ERVL	chr3	58163931	58163933	+	ENSMUST00000200072.1,ENSMUSG00000104586.1	4921539H07Rik	ENSMUSG00000104586.1	ENSMUST00000200072.1	lincRNA	chr3:58163932-58167616
chr3	58290357	58290540	-	L1_Mur3	LINE	L1	chr3	58290356	58290358	-	ENSMUST00000083788.1,ENSMUSG00000065722.1	Gm26166	ENSMUSG00000065722.1	ENSMUST00000083788.1	snRNA	chr3:58290251-58290357
chr3	58414712	58414755	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	58414714	58414716	+	ENSMUST00000099090.6,ENSMUSG00000027806.9	Tsc22d2	ENSMUSG00000027806.9	ENSMUST00000099090.6	protein_coding	chr3:58414715-58466783
chr3	58414712	58414755	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	58414719	58414721	+	ENSMUST00000199164.1,ENSMUSG00000027806.9	Tsc22d2	ENSMUSG00000027806.9	ENSMUST00000199164.1	protein_coding	chr3:58414720-58461720
chr3	58544124	58544387	-	MTC	LTR	ERVL-MaLR	chr3	58544232	58544234	+	ENSMUST00000148251.1,ENSMUSG00000027810.14	Eif2a	ENSMUSG00000027810.14	ENSMUST00000148251.1	protein_coding	chr3:58544233-58550726
chr3	58697464	58697692	-	RMER21B	LTR	ERV1	chr3	58697560	58697562	+	ENSMUST00000197219.1,ENSMUSG00000105226.1	A930028O11Rik	ENSMUSG00000105226.1	ENSMUST00000197219.1	TEC	chr3:58697561-58698668
chr3	58975545	58975636	-	L1ME1	LINE	L1	chr3	58975629	58975631	+	ENSMUST00000157190.1,ENSMUSG00000087815.1	Gm22491	ENSMUSG00000087815.1	ENSMUST00000157190.1	snRNA	chr3:58975630-58975731
chr3	59269443	59269838	-	MTA_Mm	LTR	ERVL-MaLR	chr3	59269785	59269787	+	ENSMUST00000199400.1,ENSMUSG00000104550.1	Gm43589	ENSMUSG00000104550.1	ENSMUST00000199400.1	TEC	chr3:59269786-59271308
chr3	59662048	59663092	-	L1_Mus3	LINE	L1	chr3	59662857	59662859	+	ENSMUST00000191922.1,ENSMUSG00000102480.1	Gm37926	ENSMUSG00000102480.1	ENSMUST00000191922.1	TEC	chr3:59662858-59665281
chr3	59737295	59737365	-	RLTR17B_Mm	LTR	ERVK	chr3	59737316	59737318	-	ENSMUST00000194291.1,ENSMUSG00000102390.1	Gm37579	ENSMUSG00000102390.1	ENSMUST00000194291.1	processed_pseudogene	chr3:59737176-59737317
chr3	59763927	59770781	+	L1Md_F3	LINE	L1	chr3	59767274	59767276	+	ENSMUST00000192177.1,ENSMUSG00000103986.1	Gm5539	ENSMUSG00000103986.1	ENSMUST00000192177.1	processed_pseudogene	chr3:59767275-59768240
chr3	59776969	59782516	-	MERVK26-int	LTR	ERVK	chr3	59777808	59777810	+	ENSMUST00000094228.5,ENSMUSG00000074589.4	4930449A18Rik	ENSMUSG00000074589.4	ENSMUST00000094228.5	transcribed_unprocessed_pseudogene	chr3:59777809-59839919
chr3	60020866	60021411	+	MTE-int	LTR	ERVL-MaLR	chr3	60020868	60020870	-	ENSMUST00000195422.1,ENSMUSG00000103177.1	Gm18427	ENSMUSG00000103177.1	ENSMUST00000195422.1	processed_pseudogene	chr3:60020355-60020869
chr3	60025518	60025927	+	BGLII	LTR	ERVK	chr3	60025716	60025718	+	ENSMUST00000194896.1,ENSMUSG00000027761.4	Aadac	ENSMUSG00000027761.4	ENSMUST00000194896.1	protein_coding	chr3:60025717-60038504
chr3	60127737	60128024	+	Lx3B	LINE	L1	chr3	60127746	60127748	-	ENSMUST00000122698.1,ENSMUSG00000084647.1	Gm24382	ENSMUSG00000084647.1	ENSMUST00000122698.1	snRNA	chr3:60127641-60127747
chr3	60529467	60529572	-	L1MEd	LINE	L1	chr3	60529548	60529550	+	ENSMUST00000192394.5,ENSMUSG00000027763.13	Mbnl1	ENSMUSG00000027763.13	ENSMUST00000192394.5	protein_coding	chr3:60529549-60619047
chr3	62122233	62127466	+	L1Md_T	LINE	L1	chr3	62123206	62123208	+	ENSMUST00000195726.1,ENSMUSG00000103322.1	Gm37404	ENSMUSG00000103322.1	ENSMUST00000195726.1	TEC	chr3:62123207-62123565
chr3	62427158	62427198	+	G-rich	Low_complexity	Low_complexity	chr3	62427179	62427181	+	ENSMUST00000192138.1,ENSMUSG00000036885.14	Arhgef26	ENSMUSG00000036885.14	ENSMUST00000192138.1	protein_coding	chr3:62427180-62430011
chr3	63241198	63241580	+	RLTR41	LTR	ERV1	chr3	63241536	63241538	+	ENSMUST00000194324.5,ENSMUSG00000027820.12	Mme	ENSMUSG00000027820.12	ENSMUST00000194324.5	protein_coding	chr3:63241537-63327826
chr3	63439186	63439321	+	MER102c	DNA	hAT-Charlie	chr3	63439250	63439252	+	ENSMUST00000192500.1,ENSMUSG00000104336.1	Gm34240	ENSMUSG00000104336.1	ENSMUST00000192500.1	lincRNA	chr3:63439251-63457897
chr3	63488993	63489085	+	U6	snRNA	snRNA	chr3	63488992	63488994	+	ENSMUST00000158332.1,ENSMUSG00000088957.1	Gm24946	ENSMUSG00000088957.1	ENSMUST00000158332.1	snRNA	chr3:63488993-63489098
chr3	63770206	63770308	+	U6	snRNA	snRNA	chr3	63770211	63770213	+	ENSMUST00000157735.1,ENSMUSG00000088360.1	Gm23500	ENSMUSG00000088360.1	ENSMUST00000157735.1	snRNA	chr3:63770212-63770309
chr3	64163331	64163938	-	Lx2	LINE	L1	chr3	64163389	64163391	+	ENSMUST00000175943.1,ENSMUSG00000093447.1	Gm5139	ENSMUSG00000093447.1	ENSMUST00000175943.1	processed_pseudogene	chr3:64163390-64163638
chr3	64316022	64319406	-	L1Md_F3	LINE	L1	chr3	64318563	64318565	-	ENSMUST00000158110.1,ENSMUSG00000088735.1	Gm23897	ENSMUSG00000088735.1	ENSMUST00000158110.1	snoRNA	chr3:64318407-64318564
chr3	64844540	64844917	-	MLT1A1	LTR	ERVL-MaLR	chr3	64844742	64844744	-	ENSMUST00000177146.1,ENSMUSG00000097538.1	Gm26939	ENSMUSG00000097538.1	ENSMUST00000177146.1	processed_transcript	chr3:64632863-64844743
chr3	64844540	64844917	-	MLT1A1	LTR	ERVL-MaLR	chr3	64844764	64844766	-	ENSMUST00000161972.9,ENSMUSG00000062200.14	Vmn2r7	ENSMUSG00000062200.14	ENSMUST00000161972.9	protein_coding	chr3:64685044-64844765
chr3	64844540	64844917	-	MLT1A1	LTR	ERVL-MaLR	chr3	64844764	64844766	-	ENSMUST00000050123.3,ENSMUSG00000062200.14	Vmn2r7	ENSMUSG00000062200.14	ENSMUST00000050123.3	protein_coding	chr3:64715707-64844765
chr3	65253247	65253840	-	Lx5c	LINE	L1	chr3	65253427	65253429	+	ENSMUST00000161979.7,ENSMUSG00000027827.16	Kcnab1	ENSMUSG00000027827.16	ENSMUST00000161979.7	protein_coding	chr3:65253428-65377084
chr3	65525700	65525792	+	U6	snRNA	snRNA	chr3	65525700	65525702	+	ENSMUST00000157200.1,ENSMUSG00000087825.1	Gm22279	ENSMUSG00000087825.1	ENSMUST00000157200.1	snRNA	chr3:65525701-65525793
chr3	65678377	65678399	+	(T)n	Simple_repeat	Simple_repeat	chr3	65678385	65678387	+	ENSMUST00000193471.1,ENSMUSG00000104037.1	Gm37776	ENSMUSG00000104037.1	ENSMUST00000193471.1	TEC	chr3:65678386-65680882
chr3	65771510	65771617	-	U6	snRNA	snRNA	chr3	65771616	65771618	-	ENSMUST00000083396.1,ENSMUSG00000065330.1	Gm25755	ENSMUSG00000065330.1	ENSMUST00000083396.1	snRNA	chr3:65771511-65771617
chr3	65957650	65957745	+	C-rich	Low_complexity	Low_complexity	chr3	65957652	65957654	-	ENSMUST00000148623.1,ENSMUSG00000027829.15	Ccnl1	ENSMUSG00000027829.15	ENSMUST00000148623.1	protein_coding	chr3:65951434-65957653
chr3	65989643	65989798	+	B2_Mm2	SINE	B2	chr3	65989752	65989754	-	ENSMUST00000194681.1,ENSMUSG00000103641.1	Gm19024	ENSMUSG00000103641.1	ENSMUST00000194681.1	processed_pseudogene	chr3:65987158-65989753
chr3	66031488	66031644	-	L1Md_F2	LINE	L1	chr3	66031518	66031520	-	ENSMUST00000192096.1,ENSMUSG00000103369.1	Gm6546	ENSMUSG00000103369.1	ENSMUST00000192096.1	processed_pseudogene	chr3:66029540-66031519
chr3	66086664	66086999	-	ORR1A2	LTR	ERVL-MaLR	chr3	66086683	66086685	+	ENSMUST00000192618.1,ENSMUSG00000104189.1	Gm37822	ENSMUSG00000104189.1	ENSMUST00000192618.1	TEC	chr3:66086684-66087792
chr3	66088107	66088261	-	U1	snRNA	snRNA	chr3	66088260	66088262	-	ENSMUST00000082588.1,ENSMUSG00000064522.1	Gm26442	ENSMUSG00000064522.1	ENSMUST00000082588.1	snRNA	chr3:66088109-66088261
chr3	66882289	66882368	+	(GGAA)n	Simple_repeat	Simple_repeat	chr3	66882349	66882351	+	ENSMUST00000195167.1,ENSMUSG00000103700.1	Gm6555	ENSMUSG00000103700.1	ENSMUST00000195167.1	processed_pseudogene	chr3:66882350-66883138
chr3	66907619	66908615	+	L1Md_T	LINE	L1	chr3	66907765	66907767	-	ENSMUST00000194313.1,ENSMUSG00000103318.1	Gm38356	ENSMUSG00000103318.1	ENSMUST00000194313.1	processed_pseudogene	chr3:66907359-66907766
chr3	66978444	66978475	+	(CA)n	Simple_repeat	Simple_repeat	chr3	66978446	66978448	-	ENSMUST00000162060.8,ENSMUSG00000027833.16	Shox2	ENSMUSG00000027833.16	ENSMUST00000162060.8	protein_coding	chr3:66972780-66978447
chr3	66981287	66981364	+	(TCC)n	Simple_repeat	Simple_repeat	chr3	66981317	66981319	-	ENSMUST00000162098.8,ENSMUSG00000027833.16	Shox2	ENSMUSG00000027833.16	ENSMUST00000162098.8	protein_coding	chr3:66971727-66981318
chr3	66981364	66981392	+	GC_rich	Low_complexity	Low_complexity	chr3	66981389	66981391	+	ENSMUST00000162036.7,ENSMUSG00000034544.17	Rsrc1	ENSMUSG00000034544.17	ENSMUST00000162036.7	protein_coding	chr3:66981390-67356559
chr3	66981677	66981829	+	GA-rich	Low_complexity	Low_complexity	chr3	66981770	66981772	-	ENSMUST00000029422.13,ENSMUSG00000027833.16	Shox2	ENSMUSG00000027833.16	ENSMUST00000029422.13	protein_coding	chr3:66971782-66981771
chr3	66990968	66991001	+	(TTTG)n	Simple_repeat	Simple_repeat	chr3	66990971	66990973	+	ENSMUST00000182708.1,ENSMUSG00000034544.17	Rsrc1	ENSMUSG00000034544.17	ENSMUST00000182708.1	protein_coding	chr3:66990972-66994892
chr3	67055957	67056064	+	U6	snRNA	snRNA	chr3	67055957	67055959	+	ENSMUST00000083311.1,ENSMUSG00000065245.1	Gm22295	ENSMUSG00000065245.1	ENSMUST00000083311.1	snRNA	chr3:67055958-67056064
chr3	67375077	67375187	+	(TCC)n	Simple_repeat	Simple_repeat	chr3	67375162	67375164	-	ENSMUST00000166353.1,ENSMUSG00000090408.1	Gm17402	ENSMUSG00000090408.1	ENSMUST00000166353.1	protein_coding	chr3:67365461-67375163
chr3	67476962	67477316	-	ORR1C1	LTR	ERVL-MaLR	chr3	67476977	67476979	+	ENSMUST00000195639.2,ENSMUSG00000103703.2	Gm42568	ENSMUSG00000103703.2	ENSMUST00000195639.2	TEC	chr3:67476978-67478818
chr3	67684618	67685597	+	L1Md_F2	LINE	L1	chr3	67684751	67684753	-	ENSMUST00000194922.1,ENSMUSG00000102746.1	Gm37601	ENSMUSG00000102746.1	ENSMUST00000194922.1	processed_pseudogene	chr3:67684359-67684752
chr3	67743296	67743400	-	ORR1C2	LTR	ERVL-MaLR	chr3	67743296	67743298	-	ENSMUST00000192744.1,ENSMUSG00000104477.1	Gm18717	ENSMUSG00000104477.1	ENSMUST00000192744.1	processed_pseudogene	chr3:67741968-67743297
chr3	68732884	68739299	+	IAPEz-int	LTR	ERVK	chr3	68733136	68733138	+	ENSMUST00000080726.5,ENSMUSG00000058360.5	Gm10040	ENSMUSG00000058360.5	ENSMUST00000080726.5	pseudogene	chr3:68733137-68738077
chr3	68901438	68901810	-	MT2_Mm	LTR	ERVL	chr3	68901806	68901808	+	ENSMUST00000195126.1,ENSMUSG00000103007.1	Gm20690	ENSMUSG00000103007.1	ENSMUST00000195126.1	processed_pseudogene	chr3:68901807-68902161
chr3	68919354	68923565	+	L1Md_F	LINE	L1	chr3	68920104	68920106	-	ENSMUST00000136176.1,ENSMUSG00000027778.15	Ift80	ENSMUSG00000027778.15	ENSMUST00000136176.1	protein_coding	chr3:68893645-68920105
chr3	69018887	69018934	+	(T)n	Simple_repeat	Simple_repeat	chr3	69018914	69018916	+	ENSMUST00000156354.1,ENSMUSG00000034349.14	Smc4	ENSMUSG00000034349.14	ENSMUST00000156354.1	protein_coding	chr3:69018915-69021400
chr3	69044742	69044772	+	GC_rich	Low_complexity	Low_complexity	chr3	69044754	69044756	-	ENSMUST00000107802.7,ENSMUSG00000034317.14	Trim59	ENSMUSG00000034317.14	ENSMUST00000107802.7	protein_coding	chr3:69035288-69044755
chr3	69126604	69126675	+	GC_rich	Low_complexity	Low_complexity	chr3	69126629	69126631	-	ENSMUST00000127497.1,ENSMUSG00000027782.10	Kpna4	ENSMUSG00000027782.10	ENSMUST00000127497.1	protein_coding	chr3:69094715-69126630
chr3	69131151	69131246	-	MIRb	SINE	MIR	chr3	69131232	69131234	+	ENSMUST00000195406.1,ENSMUSG00000094763.3	Gm1647	ENSMUSG00000094763.3	ENSMUST00000195406.1	lincRNA	chr3:69131233-69157177
chr3	69316843	69316908	+	(CCGAG)n	Simple_repeat	Simple_repeat	chr3	69316860	69316862	+	ENSMUST00000029355.8,ENSMUSG00000027784.10	Ppm1l	ENSMUSG00000027784.10	ENSMUST00000029355.8	protein_coding	chr3:69316861-69560802
chr3	69661697	69661811	+	B1F1	SINE	Alu	chr3	69661765	69661767	+	ENSMUST00000193752.1,ENSMUSG00000102342.1	Gm37380	ENSMUSG00000102342.1	ENSMUST00000193752.1	processed_pseudogene	chr3:69661766-69662162
chr3	69685467	69685545	+	5S	rRNA	rRNA	chr3	69685466	69685468	+	ENSMUST00000157223.1,ENSMUSG00000087848.1	Gm25621	ENSMUSG00000087848.1	ENSMUST00000157223.1	rRNA	chr3:69685467-69685580
chr3	70687726	70693774	+	L1Md_A	LINE	L1	chr3	70689091	70689093	+	ENSMUST00000099459.3,ENSMUSG00000074877.3	Gm10780	ENSMUSG00000074877.3	ENSMUST00000099459.3	pseudogene	chr3:70689092-70689380
chr3	71398416	71404798	-	L1Md_F2	LINE	L1	chr3	71401546	71401548	-	ENSMUST00000193033.1,ENSMUSG00000102666.1	Gm8599	ENSMUSG00000102666.1	ENSMUST00000193033.1	processed_pseudogene	chr3:71401091-71401547
chr3	72737921	72737981	-	U2	snRNA	snRNA	chr3	72737980	72737982	-	ENSMUST00000122803.1,ENSMUSG00000084752.1	Gm22451	ENSMUSG00000084752.1	ENSMUST00000122803.1	snRNA	chr3:72737831-72737981
chr3	73146646	73147160	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	73146848	73146850	+	ENSMUST00000103862.1,ENSMUSG00000077050.1	Gm24544	ENSMUSG00000077050.1	ENSMUST00000103862.1	miRNA	chr3:73146849-73146958
chr3	73163599	73164621	-	RMER1B	Other	Other	chr3	73164085	73164087	+	ENSMUST00000193965.1,ENSMUSG00000102916.1	Gm37725	ENSMUSG00000102916.1	ENSMUST00000193965.1	TEC	chr3:73164086-73166210
chr3	73207768	73208016	-	7SK	RNA	RNA	chr3	73208000	73208002	-	ENSMUST00000158169.1,ENSMUSG00000088794.1	Gm22538	ENSMUSG00000088794.1	ENSMUST00000158169.1	misc_RNA	chr3:73207703-73208001
chr3	73329082	73329488	-	Lx6	LINE	L1	chr3	73329433	73329435	+	ENSMUST00000192351.1,ENSMUSG00000102820.1	Gm38353	ENSMUSG00000102820.1	ENSMUST00000192351.1	lincRNA	chr3:73329434-73470014
chr3	74016742	74017647	-	MTB-int	LTR	ERVL-MaLR	chr3	74017276	74017278	-	ENSMUST00000193390.1,ENSMUSG00000104096.1	Gm20356	ENSMUSG00000104096.1	ENSMUST00000193390.1	lincRNA	chr3:74009217-74017277
chr3	75023843	75025269	+	L1_Mur3	LINE	L1	chr3	75024614	75024616	-	ENSMUST00000192431.1,ENSMUSG00000102420.1	Gm37464	ENSMUSG00000102420.1	ENSMUST00000192431.1	TEC	chr3:75022396-75024615
chr3	75648378	75649677	-	Lx2B	LINE	L1	chr3	75648656	75648658	-	ENSMUST00000191479.1,ENSMUSG00000099370.1	Platr10	ENSMUSG00000099370.1	ENSMUST00000191479.1	lincRNA	chr3:75647840-75648657
chr3	75655504	75655888	-	RLTR9E	LTR	ERVK	chr3	75655730	75655732	-	ENSMUST00000190602.1,ENSMUSG00000099370.1	Platr10	ENSMUSG00000099370.1	ENSMUST00000190602.1	lincRNA	chr3:75647446-75655731
chr3	75878956	75879048	+	RMER15	LTR	ERVL	chr3	75879007	75879009	-	ENSMUST00000134219.1,ENSMUSG00000034109.15	Golim4	ENSMUSG00000034109.15	ENSMUST00000134219.1	protein_coding	chr3:75876479-75879008
chr3	76821640	76822063	+	Lx2	LINE	L1	chr3	76822058	76822060	+	ENSMUST00000195775.1,ENSMUSG00000103702.1	Gm37290	ENSMUSG00000103702.1	ENSMUST00000195775.1	processed_pseudogene	chr3:76822059-76822397
chr3	77703985	77704736	-	Lx2B2	LINE	L1	chr3	77704385	77704387	-	ENSMUST00000194247.1,ENSMUSG00000102872.1	Gm38195	ENSMUSG00000102872.1	ENSMUST00000194247.1	TEC	chr3:77702888-77704386
chr3	78842223	78842475	+	7SK	RNA	RNA	chr3	78842223	78842225	+	ENSMUST00000157838.1,ENSMUSG00000088463.1	Gm24749	ENSMUSG00000088463.1	ENSMUST00000157838.1	misc_RNA	chr3:78842224-78842566
chr3	79196373	79196476	+	U6	snRNA	snRNA	chr3	79196373	79196375	+	ENSMUST00000082759.1,ENSMUSG00000064693.1	Gm24150	ENSMUSG00000064693.1	ENSMUST00000082759.1	snRNA	chr3:79196374-79196477
chr3	79287374	79287409	+	GC_rich	Low_complexity	Low_complexity	chr3	79287391	79287393	+	ENSMUST00000195547.1,ENSMUSG00000102545.1	6430573P05Rik	ENSMUSG00000102545.1	ENSMUST00000195547.1	lincRNA	chr3:79287392-79289848
chr3	79552179	79552406	+	RMER15	LTR	ERVL	chr3	79552192	79552194	-	ENSMUST00000161319.1,ENSMUSG00000089746.1	Gm3513	ENSMUSG00000089746.1	ENSMUST00000161319.1	sense_intronic	chr3:79551314-79552193
chr3	79567611	79567731	+	GC_rich	Low_complexity	Low_complexity	chr3	79567681	79567683	-	ENSMUST00000076136.6,ENSMUSG00000061175.11	Fnip2	ENSMUSG00000061175.11	ENSMUST00000076136.6	protein_coding	chr3:79459294-79567682
chr3	79567611	79567731	+	GC_rich	Low_complexity	Low_complexity	chr3	79567678	79567680	-	ENSMUST00000139171.1,ENSMUSG00000061175.11	Fnip2	ENSMUSG00000061175.11	ENSMUST00000139171.1	protein_coding	chr3:79505943-79567679
chr3	79676847	79676885	+	(A)n	Simple_repeat	Simple_repeat	chr3	79676875	79676877	-	ENSMUST00000182345.1,ENSMUSG00000098204.1	Gm26984	ENSMUSG00000098204.1	ENSMUST00000182345.1	sense_intronic	chr3:79673367-79676876
chr3	79834929	79835033	+	U6	snRNA	snRNA	chr3	79834932	79834934	+	ENSMUST00000104273.1,ENSMUSG00000077461.1	Gm26420	ENSMUSG00000077461.1	ENSMUST00000104273.1	snRNA	chr3:79834933-79835035
chr3	79852686	79852968	-	MLT1F	LTR	ERVL-MaLR	chr3	79852772	79852774	-	ENSMUST00000193410.2,ENSMUSG00000027956.11	Tmem144	ENSMUSG00000027956.11	ENSMUST00000193410.2	protein_coding	chr3:79832062-79852773
chr3	79852686	79852968	-	MLT1F	LTR	ERVL-MaLR	chr3	79852767	79852769	-	ENSMUST00000192341.1,ENSMUSG00000027956.11	Tmem144	ENSMUSG00000027956.11	ENSMUST00000192341.1	protein_coding	chr3:79839140-79852768
chr3	80054742	80055245	-	MT2B1	LTR	ERVL	chr3	80054891	80054893	+	ENSMUST00000194077.1,ENSMUSG00000103181.1	A330069K06Rik	ENSMUSG00000103181.1	ENSMUST00000194077.1	lincRNA	chr3:80054892-80213085
chr3	80133852	80134493	+	Lx2B2	LINE	L1	chr3	80134131	80134133	+	ENSMUST00000196183.1,ENSMUSG00000105307.1	Gm43839	ENSMUSG00000105307.1	ENSMUST00000196183.1	TEC	chr3:80134132-80136456
chr3	80334324	80334658	-	MTEa	LTR	ERVL-MaLR	chr3	80334594	80334596	-	ENSMUST00000193516.1,ENSMUSG00000102379.1	Gm37971	ENSMUSG00000102379.1	ENSMUST00000193516.1	lincRNA	chr3:80285123-80334595
chr3	80802730	80802786	+	(CA)n	Simple_repeat	Simple_repeat	chr3	80802779	80802781	-	ENSMUST00000195062.1,ENSMUSG00000033981.14	Gria2	ENSMUSG00000033981.14	ENSMUST00000195062.1	protein_coding	chr3:80707593-80802780
chr3	80913594	80913636	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	80913613	80913615	-	ENSMUST00000135043.7,ENSMUSG00000028020.16	Glrb	ENSMUSG00000028020.16	ENSMUST00000135043.7	protein_coding	chr3:80843599-80913614
chr3	80962359	80963273	+	Lx3_Mus	LINE	L1	chr3	80962959	80962961	+	ENSMUST00000200360.1,ENSMUSG00000105092.1	Gm42468	ENSMUSG00000105092.1	ENSMUST00000200360.1	lincRNA	chr3:80962960-80971627
chr3	81950882	81951232	+	MLT1J	LTR	ERVL-MaLR	chr3	81950936	81950938	+	ENSMUST00000155144.1,ENSMUSG00000028015.3	Ctso	ENSMUSG00000028015.3	ENSMUST00000155144.1	protein_coding	chr3:81950937-81954300
chr3	81976130	81977130	+	Lx2	LINE	L1	chr3	81976201	81976203	-	ENSMUST00000029645.13,ENSMUSG00000028011.16	Tdo2	ENSMUSG00000028011.16	ENSMUST00000029645.13	protein_coding	chr3:81957090-81976202
chr3	81976130	81977130	+	Lx2	LINE	L1	chr3	81976201	81976203	-	ENSMUST00000193879.1,ENSMUSG00000028011.16	Tdo2	ENSMUSG00000028011.16	ENSMUST00000193879.1	protein_coding	chr3:81958791-81976202
chr3	82754121	82754530	-	RLTR10A	LTR	ERVK	chr3	82754523	82754525	+	ENSMUST00000196689.1,ENSMUSG00000104898.1	Gm30043	ENSMUSG00000104898.1	ENSMUST00000196689.1	lincRNA	chr3:82754524-82759860
chr3	82793703	82793905	-	7SK	RNA	RNA	chr3	82793896	82793898	-	ENSMUST00000157277.1,ENSMUSG00000087902.1	Gm22038	ENSMUSG00000087902.1	ENSMUST00000157277.1	misc_RNA	chr3:82793656-82793897
chr3	83574083	83574158	-	MER21C	LTR	ERVL	chr3	83574121	83574123	-	ENSMUST00000185938.1,ENSMUSG00000101334.1	1700028M03Rik	ENSMUSG00000101334.1	ENSMUST00000185938.1	lincRNA	chr3:83555363-83574122
chr3	83634641	83634874	-	7SK	RNA	RNA	chr3	83634873	83634875	-	ENSMUST00000122647.1,ENSMUSG00000084596.1	Gm22342	ENSMUSG00000084596.1	ENSMUST00000122647.1	misc_RNA	chr3:83634577-83634874
chr3	83634874	83635499	+	Lx2B2	LINE	L1	chr3	83634873	83634875	-	ENSMUST00000122647.1,ENSMUSG00000084596.1	Gm22342	ENSMUSG00000084596.1	ENSMUST00000122647.1	misc_RNA	chr3:83634577-83634874
chr3	83702251	83702358	+	U6	snRNA	snRNA	chr3	83702251	83702253	+	ENSMUST00000157972.1,ENSMUSG00000088597.1	Gm24584	ENSMUSG00000088597.1	ENSMUST00000157972.1	snRNA	chr3:83702252-83702358
chr3	83943325	83943960	-	RLTR17	LTR	ERVK	chr3	83943742	83943744	-	ENSMUST00000194522.1,ENSMUSG00000033767.14	Tmem131l	ENSMUSG00000033767.14	ENSMUST00000194522.1	protein_coding	chr3:83940519-83943743
chr3	84040167	84040245	+	C-rich	Low_complexity	Low_complexity	chr3	84040174	84040176	-	ENSMUST00000191758.5,ENSMUSG00000033767.14	Tmem131l	ENSMUSG00000033767.14	ENSMUST00000191758.5	protein_coding	chr3:83897655-84040175
chr3	84040167	84040245	+	C-rich	Low_complexity	Low_complexity	chr3	84040174	84040176	-	ENSMUST00000052342.8,ENSMUSG00000033767.14	Tmem131l	ENSMUSG00000033767.14	ENSMUST00000052342.8	protein_coding	chr3:83898209-84040175
chr3	84212790	84212909	-	MIRc	SINE	MIR	chr3	84212837	84212839	-	ENSMUST00000065380.12,ENSMUSG00000027993.16	Trim2	ENSMUSG00000027993.16	ENSMUST00000065380.12	protein_coding	chr3:84163337-84212838
chr3	84306570	84306931	+	ORR1D1	LTR	ERVL-MaLR	chr3	84306876	84306878	-	ENSMUST00000197845.1,ENSMUSG00000027993.16	Trim2	ENSMUSG00000027993.16	ENSMUST00000197845.1	protein_coding	chr3:84304846-84306877
chr3	84480366	84480422	+	GC_rich	Low_complexity	Low_complexity	chr3	84480392	84480394	-	ENSMUST00000194027.1,ENSMUSG00000041842.15	Fhdc1	ENSMUSG00000041842.15	ENSMUST00000194027.1	protein_coding	chr3:84444108-84480393
chr3	84690104	84690299	-	LTR58	LTR	ERV1	chr3	84690222	84690224	+	ENSMUST00000128344.1,ENSMUSG00000056498.13	Tmem154	ENSMUSG00000056498.13	ENSMUST00000128344.1	protein_coding	chr3:84690223-84692544
chr3	85317481	85317556	-	RMER17C2	LTR	ERVK	chr3	85317518	85317520	+	ENSMUST00000189046.1,ENSMUSG00000099995.1	1700036G14Rik	ENSMUSG00000099995.1	ENSMUST00000189046.1	antisense	chr3:85317519-85332030
chr3	85427912	85428269	-	ORR1F	LTR	ERVL-MaLR	chr3	85428127	85428129	-	ENSMUST00000200057.1,ENSMUSG00000105012.1	Gm42813	ENSMUSG00000105012.1	ENSMUST00000200057.1	lincRNA	chr3:85397524-85428128
chr3	85467258	85467454	+	RLTR17B_Mm	LTR	ERVK	chr3	85467376	85467378	+	ENSMUST00000116774.1,ENSMUSG00000080424.1	Mir466k	ENSMUSG00000080424.1	ENSMUST00000116774.1	miRNA	chr3:85467377-85467498
chr3	85745999	85746438	-	RMER4B	LTR	ERVK	chr3	85746265	85746267	-	ENSMUST00000118408.7,ENSMUSG00000051000.17	Fam160a1	ENSMUSG00000051000.17	ENSMUST00000118408.7	protein_coding	chr3:85660063-85746266
chr3	85908352	85908459	-	U6	snRNA	snRNA	chr3	85908458	85908460	-	ENSMUST00000082906.1,ENSMUSG00000064840.1	Gm26204	ENSMUSG00000064840.1	ENSMUST00000082906.1	snRNA	chr3:85908353-85908459
chr3	85962873	85963356	-	RLTR25A	LTR	ERVK	chr3	85962909	85962911	-	ENSMUST00000185022.1,ENSMUSG00000098444.1	Gm27811	ENSMUSG00000098444.1	ENSMUST00000185022.1	snRNA	chr3:85962847-85962910
chr3	86070863	86070919	-	tRNA-Ala-GCY_	tRNA	tRNA	chr3	86070914	86070916	+	ENSMUST00000182666.7,ENSMUSG00000028082.13	Sh3d19	ENSMUSG00000028082.13	ENSMUST00000182666.7	protein_coding	chr3:86070915-86130526
chr3	86125206	86125588	+	MTC	LTR	ERVL-MaLR	chr3	86125328	86125330	+	ENSMUST00000183202.1,ENSMUSG00000028082.13	Sh3d19	ENSMUSG00000028082.13	ENSMUST00000183202.1	protein_coding	chr3:86125329-86129110
chr3	86224547	86224932	-	L1M4b	LINE	L1	chr3	86224679	86224681	+	ENSMUST00000192145.5,ENSMUSG00000028080.16	Lrba	ENSMUSG00000028080.16	ENSMUST00000192145.5	protein_coding	chr3:86224680-86746712
chr3	86224547	86224932	-	L1M4b	LINE	L1	chr3	86224679	86224681	+	ENSMUST00000194759.5,ENSMUSG00000028080.16	Lrba	ENSMUSG00000028080.16	ENSMUST00000194759.5	protein_coding	chr3:86224680-86776956
chr3	86224547	86224932	-	L1M4b	LINE	L1	chr3	86224679	86224681	+	ENSMUST00000107635.6,ENSMUSG00000028080.16	Lrba	ENSMUSG00000028080.16	ENSMUST00000107635.6	protein_coding	chr3:86224680-86782689
chr3	86384246	86384347	+	U6	snRNA	snRNA	chr3	86384246	86384248	+	ENSMUST00000082933.1,ENSMUSG00000064867.1	Gm25039	ENSMUSG00000064867.1	ENSMUST00000082933.1	snRNA	chr3:86384247-86384353
chr3	86792266	86792327	+	ID2	SINE	ID	chr3	86792314	86792316	-	ENSMUST00000192260.1,ENSMUSG00000028078.14	Dclk2	ENSMUSG00000028078.14	ENSMUST00000192260.1	protein_coding	chr3:86787241-86792315
chr3	86797805	86798016	+	MLT1A0	LTR	ERVL-MaLR	chr3	86798011	86798013	-	ENSMUST00000193769.1,ENSMUSG00000028078.14	Dclk2	ENSMUSG00000028078.14	ENSMUST00000193769.1	protein_coding	chr3:86789346-86798012
chr3	87174659	87174710	+	C-rich	Low_complexity	Low_complexity	chr3	87174699	87174701	-	ENSMUST00000159976.7,ENSMUSG00000041734.15	Kirrel	ENSMUSG00000041734.15	ENSMUST00000159976.7	protein_coding	chr3:87078593-87174700
chr3	87208001	87208252	+	MTEa	LTR	ERVL-MaLR	chr3	87208004	87208006	-	ENSMUST00000098980.4,ENSMUSG00000074506.4	Gm10705	ENSMUSG00000074506.4	ENSMUST00000098980.4	processed_pseudogene	chr3:87207545-87208005
chr3	87617530	87617651	+	G-rich	Low_complexity	Low_complexity	chr3	87617558	87617560	+	ENSMUST00000136072.7,ENSMUSG00000041977.18	Arhgef11	ENSMUSG00000041977.18	ENSMUST00000136072.7	protein_coding	chr3:87617559-87699145
chr3	87617530	87617651	+	G-rich	Low_complexity	Low_complexity	chr3	87617574	87617576	+	ENSMUST00000039476.14,ENSMUSG00000041977.18	Arhgef11	ENSMUSG00000041977.18	ENSMUST00000039476.14	protein_coding	chr3:87617575-87738033
chr3	87617530	87617651	+	G-rich	Low_complexity	Low_complexity	chr3	87617584	87617586	+	ENSMUST00000129113.7,ENSMUSG00000041977.18	Arhgef11	ENSMUSG00000041977.18	ENSMUST00000129113.7	protein_coding	chr3:87617585-87735909
chr3	87617530	87617651	+	G-rich	Low_complexity	Low_complexity	chr3	87617591	87617593	+	ENSMUST00000142799.1,ENSMUSG00000041977.18	Arhgef11	ENSMUSG00000041977.18	ENSMUST00000142799.1	protein_coding	chr3:87617592-87717435
chr3	87762204	87762298	+	MT2B2	LTR	ERVL	chr3	87762213	87762215	-	ENSMUST00000172631.7,ENSMUSG00000028073.15	Pear1	ENSMUSG00000028073.15	ENSMUST00000172631.7	protein_coding	chr3:87749098-87762214
chr3	87824296	87824319	+	C-rich	Low_complexity	Low_complexity	chr3	87824305	87824307	-	ENSMUST00000090981.12,ENSMUSG00000028073.15	Pear1	ENSMUSG00000028073.15	ENSMUST00000090981.12	protein_coding	chr3:87749097-87824306
chr3	87929295	87929375	-	B1F	SINE	Alu	chr3	87929360	87929362	-	ENSMUST00000168070.1,ENSMUSG00000004896.16	Rrnad1	ENSMUSG00000004896.16	ENSMUST00000168070.1	protein_coding	chr3:87923316-87929361
chr3	87996351	87996389	+	RLTR20C1_MM	LTR	ERVK	chr3	87996364	87996366	-	ENSMUST00000193276.1,ENSMUSG00000004892.13	Bcan	ENSMUSG00000004892.13	ENSMUST00000193276.1	protein_coding	chr3:87993594-87996365
chr3	88336297	88336389	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	88336310	88336312	+	ENSMUST00000192057.5,ENSMUSG00000001415.10	Smg5	ENSMUSG00000001415.10	ENSMUST00000192057.5	protein_coding	chr3:88336311-88352729
chr3	88336297	88336389	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	88336364	88336366	+	ENSMUST00000194942.5,ENSMUSG00000001415.10	Smg5	ENSMUSG00000001415.10	ENSMUST00000194942.5	protein_coding	chr3:88336365-88343316
chr3	88340653	88340761	+	B3	SINE	B2	chr3	88340719	88340721	+	ENSMUST00000193007.1,ENSMUSG00000001415.10	Smg5	ENSMUSG00000001415.10	ENSMUST00000193007.1	protein_coding	chr3:88340720-88347596
chr3	88369594	88369986	-	RLTR10D	LTR	ERVK	chr3	88369721	88369723	-	ENSMUST00000140259.1,ENSMUSG00000074489.9	Bglap3	ENSMUSG00000074489.9	ENSMUST00000140259.1	protein_coding	chr3:88368620-88369722
chr3	88369594	88369986	-	RLTR10D	LTR	ERVK	chr3	88369830	88369832	-	ENSMUST00000075523.10,ENSMUSG00000074489.9	Bglap3	ENSMUSG00000074489.9	ENSMUST00000075523.10	protein_coding	chr3:88368622-88369831
chr3	88372606	88372996	-	RLTR10D	LTR	ERVK	chr3	88372742	88372744	-	ENSMUST00000107543.7,ENSMUSG00000074489.9	Bglap3	ENSMUSG00000074489.9	ENSMUST00000107543.7	protein_coding	chr3:88368616-88372743
chr3	88372606	88372996	-	RLTR10D	LTR	ERVK	chr3	88372742	88372744	-	ENSMUST00000107542.1,ENSMUSG00000074489.9	Bglap3	ENSMUSG00000074489.9	ENSMUST00000107542.1	protein_coding	chr3:88368622-88372743
chr3	88396505	88396938	+	RMER4B	LTR	ERVK	chr3	88396719	88396721	-	ENSMUST00000195899.1,ENSMUSG00000028066.15	Pmf1	ENSMUSG00000028066.15	ENSMUST00000195899.1	protein_coding	chr3:88395743-88396720
chr3	88551039	88551257	+	B3	SINE	B2	chr3	88551093	88551095	-	ENSMUST00000145548.1,ENSMUSG00000028062.15	Lamtor2	ENSMUSG00000028062.15	ENSMUST00000145548.1	protein_coding	chr3:88549819-88551094
chr3	88553684	88553835	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	88553757	88553759	+	ENSMUST00000008748.7,ENSMUSG00000008604.11	Ubqln4	ENSMUSG00000008604.11	ENSMUST00000008748.7	protein_coding	chr3:88553758-88569725
chr3	88553684	88553835	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	88553763	88553765	+	ENSMUST00000194303.5,ENSMUSG00000008604.11	Ubqln4	ENSMUSG00000008604.11	ENSMUST00000194303.5	protein_coding	chr3:88553764-88563560
chr3	88553684	88553835	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	88553795	88553797	+	ENSMUST00000192962.1,ENSMUSG00000008604.11	Ubqln4	ENSMUSG00000008604.11	ENSMUST00000192962.1	protein_coding	chr3:88553796-88556838
chr3	88575726	88576151	+	RLTR11A2	LTR	ERVK	chr3	88575875	88575877	+	ENSMUST00000192688.5,ENSMUSG00000041355.13	Ssr2	ENSMUSG00000041355.13	ENSMUST00000192688.5	protein_coding	chr3:88575876-88583873
chr3	88575726	88576151	+	RLTR11A2	LTR	ERVK	chr3	88575938	88575940	+	ENSMUST00000193069.1,ENSMUSG00000041355.13	Ssr2	ENSMUSG00000041355.13	ENSMUST00000193069.1	protein_coding	chr3:88575939-88579983
chr3	88575726	88576151	+	RLTR11A2	LTR	ERVK	chr3	88575948	88575950	+	ENSMUST00000194604.1,ENSMUSG00000041355.13	Ssr2	ENSMUSG00000041355.13	ENSMUST00000194604.1	protein_coding	chr3:88575949-88579976
chr3	88605828	88606003	-	B2_Mm1a	SINE	B2	chr3	88605965	88605967	+	ENSMUST00000212392.1,ENSMUSG00000028059.15	Arhgef2	ENSMUSG00000028059.15	ENSMUST00000212392.1	protein_coding	chr3:88605966-88607853
chr3	88699453	88699774	-	Lx5b	LINE	L1	chr3	88699639	88699641	+	ENSMUST00000198721.1,ENSMUSG00000028060.14	Khdc4	ENSMUSG00000028060.14	ENSMUST00000198721.1	protein_coding	chr3:88699640-88708987
chr3	88752027	88752138	-	B1F2	SINE	Alu	chr3	88752050	88752052	-	ENSMUST00000107503.7,ENSMUSG00000068923.14	Syt11	ENSMUSG00000068923.14	ENSMUST00000107503.7	protein_coding	chr3:88744700-88752051
chr3	88862918	88863082	+	U1	snRNA	snRNA	chr3	88862918	88862920	+	ENSMUST00000082804.1,ENSMUSG00000064738.1	Gm23054	ENSMUSG00000064738.1	ENSMUST00000082804.1	snRNA	chr3:88862919-88863080
chr3	88890426	88890573	-	B1_Mus2	SINE	Alu	chr3	88890434	88890436	+	ENSMUST00000198113.1,ENSMUSG00000054199.17	Gon4l	ENSMUSG00000054199.17	ENSMUST00000198113.1	protein_coding	chr3:88890435-88900499
chr3	88950568	88950644	+	G-rich	Low_complexity	Low_complexity	chr3	88950621	88950623	+	ENSMUST00000186583.6,ENSMUSG00000028053.13	Ash1l	ENSMUSG00000028053.13	ENSMUST00000186583.6	protein_coding	chr3:88950622-89079375
chr3	88970622	88970729	-	U6	snRNA	snRNA	chr3	88970728	88970730	-	ENSMUST00000178517.1,ENSMUSG00000095712.1	Gm26465	ENSMUSG00000095712.1	ENSMUST00000178517.1	snRNA	chr3:88970623-88970729
chr3	88970729	88971986	-	L1_Mur3	LINE	L1	chr3	88970728	88970730	-	ENSMUST00000178517.1,ENSMUSG00000095712.1	Gm26465	ENSMUSG00000095712.1	ENSMUST00000178517.1	snRNA	chr3:88970623-88970729
chr3	89095960	89096206	+	MTD	LTR	ERVL-MaLR	chr3	89095982	89095984	-	ENSMUST00000200433.1,ENSMUSG00000059743.12	Fdps	ENSMUSG00000059743.12	ENSMUST00000200433.1	protein_coding	chr3:89095056-89095983
chr3	89097920	89098013	-	U6	snRNA	snRNA	chr3	89098012	89098014	-	ENSMUST00000103960.1,ENSMUSG00000077148.1	Gm22935	ENSMUSG00000077148.1	ENSMUST00000103960.1	snRNA	chr3:89097910-89098013
chr3	89164820	89164977	+	G-rich	Low_complexity	Low_complexity	chr3	89164839	89164841	+	ENSMUST00000121931.7,ENSMUSG00000068917.12	Clk2	ENSMUSG00000068917.12	ENSMUST00000121931.7	protein_coding	chr3:89164840-89176921
chr3	89172117	89172302	-	B2_Mm1a	SINE	B2	chr3	89172164	89172166	+	ENSMUST00000153255.7,ENSMUSG00000068917.12	Clk2	ENSMUSG00000068917.12	ENSMUST00000153255.7	protein_coding	chr3:89172165-89176080
chr3	89201166	89201273	-	U6	snRNA	snRNA	chr3	89201272	89201274	-	ENSMUST00000178701.1,ENSMUSG00000094489.1	Gm23269	ENSMUSG00000094489.1	ENSMUST00000178701.1	snRNA	chr3:89201167-89201273
chr3	89209661	89209682	+	(GA)n	Simple_repeat	Simple_repeat	chr3	89209663	89209665	-	ENSMUST00000174218.7,ENSMUSG00000064068.14	Mtx1	ENSMUSG00000064068.14	ENSMUST00000174218.7	protein_coding	chr3:89209087-89209664
chr3	89215102	89215187	+	C-rich	Low_complexity	Low_complexity	chr3	89215179	89215181	+	ENSMUST00000029682.10,ENSMUSG00000028047.11	Thbs3	ENSMUSG00000028047.11	ENSMUST00000029682.10	protein_coding	chr3:89215180-89226837
chr3	89245168	89245216	+	G-rich	Low_complexity	Low_complexity	chr3	89245198	89245200	-	ENSMUST00000090924.12,ENSMUSG00000042766.17	Trim46	ENSMUSG00000042766.17	ENSMUST00000090924.12	protein_coding	chr3:89234177-89245199
chr3	89248825	89248968	-	B1_Mur3	SINE	Alu	chr3	89248866	89248868	+	ENSMUST00000132818.1,ENSMUSG00000042747.12	Krtcap2	ENSMUSG00000042747.12	ENSMUST00000132818.1	protein_coding	chr3:89248867-89249722
chr3	89302431	89302559	+	B1_Mus2	SINE	Alu	chr3	89302477	89302479	+	ENSMUST00000175352.2,ENSMUSG00000093093.2	Gm22642	ENSMUSG00000093093.2	ENSMUST00000175352.2	misc_RNA	chr3:89302478-89302729
chr3	89349991	89350045	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr3	89349995	89349997	-	ENSMUST00000029676.11,ENSMUSG00000028041.17	Adam15	ENSMUSG00000028041.17	ENSMUST00000029676.11	protein_coding	chr3:89339640-89349996
chr3	89354805	89355022	+	MamRep564	Unknown	Unknown	chr3	89354897	89354899	-	ENSMUST00000200174.1,ENSMUSG00000042672.15	Dcst1	ENSMUSG00000042672.15	ENSMUST00000200174.1	protein_coding	chr3:89353629-89354898
chr3	89393268	89393388	+	C-rich	Low_complexity	Low_complexity	chr3	89393361	89393363	-	ENSMUST00000029677.8,ENSMUSG00000028042.15	Zbtb7b	ENSMUSG00000028042.15	ENSMUST00000029677.8	protein_coding	chr3:89377644-89393362
chr3	89393268	89393388	+	C-rich	Low_complexity	Low_complexity	chr3	89393341	89393343	-	ENSMUST00000142119.1,ENSMUSG00000028042.15	Zbtb7b	ENSMUSG00000028042.15	ENSMUST00000142119.1	protein_coding	chr3:89381174-89393342
chr3	89393268	89393388	+	C-rich	Low_complexity	Low_complexity	chr3	89393377	89393379	-	ENSMUST00000148361.7,ENSMUSG00000028042.15	Zbtb7b	ENSMUSG00000028042.15	ENSMUST00000148361.7	protein_coding	chr3:89381204-89393378
chr3	89837780	89837904	+	B1_Mus1	SINE	Alu	chr3	89837888	89837890	+	ENSMUST00000197454.1,ENSMUSG00000046280.9	She	ENSMUSG00000046280.9	ENSMUST00000197454.1	protein_coding	chr3:89837889-89839377
chr3	89947300	89947454	+	RSINE1	SINE	B4	chr3	89947350	89947352	-	ENSMUST00000170324.1,ENSMUSG00000060671.12	Atp8b2	ENSMUSG00000060671.12	ENSMUST00000170324.1	protein_coding	chr3:89946436-89947351
chr3	89953347	89953430	-	B1F	SINE	Alu	chr3	89953364	89953366	-	ENSMUST00000163354.7,ENSMUSG00000060671.12	Atp8b2	ENSMUSG00000060671.12	ENSMUST00000163354.7	protein_coding	chr3:89939489-89953365
chr3	89967999	89968163	-	U1	snRNA	snRNA	chr3	89968162	89968164	-	ENSMUST00000083111.1,ENSMUSG00000065045.1	Gm24046	ENSMUSG00000065045.1	ENSMUST00000083111.1	snRNA	chr3:89967999-89968163
chr3	90011191	90011300	+	PB1D11	SINE	Alu	chr3	90011209	90011211	-	ENSMUST00000183442.1,ENSMUSG00000098397.1	Mir7669	ENSMUSG00000098397.1	ENSMUST00000183442.1	miRNA	chr3:90011153-90011210
chr3	90017612	90017642	+	(A)n	Simple_repeat	Simple_repeat	chr3	90017628	90017630	-	ENSMUST00000197633.1,ENSMUSG00000042520.16	Ubap2l	ENSMUSG00000042520.16	ENSMUST00000197633.1	protein_coding	chr3:90016140-90017629
chr3	90020365	90020637	+	B4A	SINE	B4	chr3	90020589	90020591	-	ENSMUST00000199612.4,ENSMUSG00000042520.16	Ubap2l	ENSMUSG00000042520.16	ENSMUST00000199612.4	protein_coding	chr3:90014368-90020590
chr3	90048234	90048314	+	L1Md_F3	LINE	L1	chr3	90048298	90048300	-	ENSMUST00000196917.1,ENSMUSG00000042520.16	Ubap2l	ENSMUSG00000042520.16	ENSMUST00000196917.1	protein_coding	chr3:90044870-90048299
chr3	90052395	90052440	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	90052437	90052439	-	ENSMUST00000199929.1,ENSMUSG00000042520.16	Ubap2l	ENSMUSG00000042520.16	ENSMUST00000199929.1	protein_coding	chr3:90043806-90052438
chr3	90052514	90052588	+	C-rich	Low_complexity	Low_complexity	chr3	90052514	90052516	-	ENSMUST00000199834.4,ENSMUSG00000042520.16	Ubap2l	ENSMUSG00000042520.16	ENSMUST00000199834.4	protein_coding	chr3:90006220-90052515
chr3	90057180	90057359	-	B3	SINE	B2	chr3	90057258	90057260	+	ENSMUST00000160263.1,ENSMUSG00000090005.1	Gm16540	ENSMUSG00000090005.1	ENSMUST00000160263.1	sense_intronic	chr3:90057259-90058380
chr3	90198512	90198699	+	B2_Mm2	SINE	B2	chr3	90198681	90198683	+	ENSMUST00000122578.1,ENSMUSG00000084527.1	Gm24185	ENSMUSG00000084527.1	ENSMUST00000122578.1	snRNA	chr3:90198682-90198786
chr3	90248160	90248203	+	G-rich	Low_complexity	Low_complexity	chr3	90248171	90248173	+	ENSMUST00000015467.8,ENSMUSG00000052310.9	Slc39a1	ENSMUSG00000052310.9	ENSMUST00000015467.8	protein_coding	chr3:90248172-90253612
chr3	90254338	90254423	+	G-rich	Low_complexity	Low_complexity	chr3	90254340	90254342	+	ENSMUST00000136970.7,ENSMUSG00000027936.18	Crtc2	ENSMUSG00000027936.18	ENSMUST00000136970.7	protein_coding	chr3:90254341-90264120
chr3	90258009	90258157	-	B1F2	SINE	Alu	chr3	90258050	90258052	+	ENSMUST00000135002.1,ENSMUSG00000027936.18	Crtc2	ENSMUSG00000027936.18	ENSMUST00000135002.1	protein_coding	chr3:90258051-90259492
chr3	90311412	90311559	-	B1_Mus1	SINE	Alu	chr3	90311517	90311519	+	ENSMUST00000200213.1,ENSMUSG00000108394.1	Gm45477	ENSMUSG00000108394.1	ENSMUST00000200213.1	TEC	chr3:90311518-90317015
chr3	90340994	90341059	-	RLTR17B_Mm	LTR	ERVK	chr3	90341028	90341030	+	ENSMUST00000205797.1,ENSMUSG00000042390.9	Gatad2b	ENSMUSG00000042390.9	ENSMUST00000205797.1	protein_coding	chr3:90341029-90343471
chr3	90341011	90341089	+	RLTR17B_Mm	LTR	ERVK	chr3	90341028	90341030	+	ENSMUST00000205797.1,ENSMUSG00000042390.9	Gatad2b	ENSMUSG00000042390.9	ENSMUST00000205797.1	protein_coding	chr3:90341029-90343471
chr3	90402668	90402787	-	PB1D10	SINE	Alu	chr3	90402673	90402675	-	ENSMUST00000199158.1,ENSMUSG00000027933.11	Ints3	ENSMUSG00000027933.11	ENSMUST00000199158.1	protein_coding	chr3:90401105-90402674
chr3	90451577	90451635	-	B3A	SINE	B2	chr3	90451582	90451584	+	ENSMUST00000134250.1,ENSMUSG00000087411.1	Gm16048	ENSMUSG00000087411.1	ENSMUST00000134250.1	antisense	chr3:90451583-90457095
chr3	90451664	90451814	-	ID_B1	SINE	B4	chr3	90451780	90451782	-	ENSMUST00000152510.1,ENSMUSG00000027931.12	Npr1	ENSMUSG00000027931.12	ENSMUST00000152510.1	protein_coding	chr3:90450710-90451781
chr3	90548618	90548712	+	U6	snRNA	snRNA	chr3	90548618	90548620	+	ENSMUST00000122507.1,ENSMUSG00000084456.1	Gm24593	ENSMUSG00000084456.1	ENSMUST00000122507.1	snRNA	chr3:90548619-90548724
chr3	90560555	90560700	-	U1	snRNA	snRNA	chr3	90560577	90560579	+	ENSMUST00000199225.1,ENSMUSG00000001021.12	S100a3	ENSMUSG00000001021.12	ENSMUST00000199225.1	protein_coding	chr3:90560578-90585325
chr3	91039437	91039574	+	URR1A	DNA	hAT-Charlie	chr3	91039572	91039574	+	ENSMUST00000199715.1,ENSMUSG00000105919.1	Gm7166	ENSMUSG00000105919.1	ENSMUST00000199715.1	processed_pseudogene	chr3:91039573-91039875
chr3	92010550	92011067	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	92010864	92010866	-	ENSMUST00000103897.1,ENSMUSG00000077085.1	Gm23697	ENSMUSG00000077085.1	ENSMUST00000103897.1	miRNA	chr3:92010756-92010865
chr3	92061197	92061717	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	92061505	92061507	-	ENSMUST00000177640.1,ENSMUSG00000096133.1	Gm25145	ENSMUSG00000096133.1	ENSMUST00000177640.1	miRNA	chr3:92061397-92061506
chr3	92215422	92215834	+	ERVB7_4-LTR_MM	LTR	ERVK	chr3	92215798	92215800	+	ENSMUST00000074449.6,ENSMUSG00000078664.2	Sprr2a1	ENSMUSG00000078664.2	ENSMUST00000074449.6	protein_coding	chr3:92215799-92221911
chr3	92246089	92246611	-	RLTR1F_Mm	LTR	ERVK	chr3	92246240	92246242	-	ENSMUST00000192966.1,ENSMUSG00000103187.1	Gm37087	ENSMUSG00000103187.1	ENSMUST00000192966.1	TEC	chr3:92242933-92246241
chr3	92280881	92281403	-	RLTR1F_Mm	LTR	ERVK	chr3	92281032	92281034	-	ENSMUST00000193494.1,ENSMUSG00000103385.1	Gm37752	ENSMUSG00000103385.1	ENSMUST00000193494.1	TEC	chr3:92277725-92281033
chr3	92607341	92607516	+	(GA)n	Simple_repeat	Simple_repeat	chr3	92607491	92607493	-	ENSMUST00000195278.1,ENSMUSG00000103523.1	2210017I01Rik	ENSMUSG00000103523.1	ENSMUST00000195278.1	protein_coding	chr3:92604718-92607492
chr3	92621525	92621813	+	L2c	LINE	L2	chr3	92621659	92621661	-	ENSMUST00000138403.1,ENSMUSG00000086848.3	Lce6a	ENSMUSG00000086848.3	ENSMUST00000138403.1	protein_coding	chr3:92620081-92621660
chr3	92843546	92843930	-	RMER13B	LTR	ERVK	chr3	92843682	92843684	-	ENSMUST00000192143.1,ENSMUSG00000102469.1	Gm38201	ENSMUSG00000102469.1	ENSMUST00000192143.1	lincRNA	chr3:92843297-92843683
chr3	92949159	92949259	-	U6	snRNA	snRNA	chr3	92949258	92949260	-	ENSMUST00000157210.1,ENSMUSG00000087835.1	Gm24481	ENSMUSG00000087835.1	ENSMUST00000157210.1	snRNA	chr3:92949158-92949259
chr3	92962115	92962534	-	L1Md_F2	LINE	L1	chr3	92962115	92962117	-	ENSMUST00000083731.1,ENSMUSG00000065665.1	Gm22577	ENSMUSG00000065665.1	ENSMUST00000083731.1	snRNA	chr3:92962008-92962116
chr3	93064955	93065100	+	B1_Mus1	SINE	Alu	chr3	93064963	93064965	-	ENSMUST00000193505.1,ENSMUSG00000104298.1	Gm38040	ENSMUSG00000104298.1	ENSMUST00000193505.1	unprocessed_pseudogene	chr3:93064740-93064964
chr3	93068549	93069072	+	MT2B1	LTR	ERVL	chr3	93068822	93068824	+	ENSMUST00000194595.1,ENSMUSG00000096879.2	Gm4858	ENSMUSG00000096879.2	ENSMUST00000194595.1	protein_coding	chr3:93068823-93075505
chr3	93388687	93388765	+	AT_rich	Low_complexity	Low_complexity	chr3	93388688	93388690	+	ENSMUST00000200618.1,ENSMUSG00000106242.1	Gm44353	ENSMUSG00000106242.1	ENSMUST00000200618.1	miRNA	chr3:93388689-93388826
chr3	93421382	93421436	-	L2c	LINE	L2	chr3	93421427	93421429	-	ENSMUST00000192475.1,ENSMUSG00000104171.1	Gm18296	ENSMUSG00000104171.1	ENSMUST00000192475.1	processed_pseudogene	chr3:93420646-93421428
chr3	93638044	93638189	-	B1_Mus1	SINE	Alu	chr3	93638043	93638045	+	ENSMUST00000193009.1,ENSMUSG00000104470.1	Gm38207	ENSMUSG00000104470.1	ENSMUST00000193009.1	TEC	chr3:93638044-93641548
chr3	93676066	93676577	-	MT2B1	LTR	ERVL	chr3	93676309	93676311	-	ENSMUST00000181541.1,ENSMUSG00000094084.2	Tdpoz1	ENSMUSG00000094084.2	ENSMUST00000181541.1	protein_coding	chr3:93669340-93676310
chr3	93943299	93943809	-	MT2B1	LTR	ERVL	chr3	93943542	93943544	-	ENSMUST00000193529.1,ENSMUSG00000095822.2	Gm9117	ENSMUSG00000095822.2	ENSMUST00000193529.1	protein_coding	chr3:93936633-93943543
chr3	94054641	94055151	-	MT2B1	LTR	ERVL	chr3	94054884	94054886	-	ENSMUST00000180746.1,ENSMUSG00000094328.2	Gm9125	ENSMUSG00000094328.2	ENSMUST00000180746.1	protein_coding	chr3:94047981-94054885
chr3	94178057	94178347	-	MT2B1	LTR	ERVL	chr3	94178192	94178194	-	ENSMUST00000161475.1,ENSMUSG00000074424.3	Gm10696	ENSMUSG00000074424.3	ENSMUST00000161475.1	protein_coding	chr3:94174412-94178193
chr3	94196440	94196848	+	MT2B1	LTR	ERVL	chr3	94196713	94196715	+	ENSMUST00000159524.1,ENSMUSG00000090268.1	Gm5286	ENSMUSG00000090268.1	ENSMUST00000159524.1	protein_coding	chr3:94196714-94199802
chr3	94263761	94264170	+	MT2B1	LTR	ERVL	chr3	94264035	94264037	+	ENSMUST00000159517.1,ENSMUSG00000089696.3	Gm4778	ENSMUSG00000089696.3	ENSMUST00000159517.1	protein_coding	chr3:94264036-94266784
chr3	94334796	94335142	+	ORR1A4	LTR	ERVL-MaLR	chr3	94335089	94335091	-	ENSMUST00000197898.1,ENSMUSG00000105506.1	Gm43743	ENSMUSG00000105506.1	ENSMUST00000197898.1	transcribed_processed_pseudogene	chr3:94334394-94335090
chr3	94359168	94359297	-	B1_Mus2	SINE	Alu	chr3	94359211	94359213	-	ENSMUST00000196531.1,ENSMUSG00000105708.1	Gm36070	ENSMUSG00000105708.1	ENSMUST00000196531.1	processed_transcript	chr3:94357326-94359212
chr3	94398510	94398535	+	(T)n	Simple_repeat	Simple_repeat	chr3	94398516	94398518	+	ENSMUST00000050975.5,ENSMUSG00000044505.5	Lingo4	ENSMUSG00000044505.5	ENSMUST00000050975.5	protein_coding	chr3:94398517-94404501
chr3	94478281	94478329	+	G-rich	Low_complexity	Low_complexity	chr3	94478294	94478296	+	ENSMUST00000199884.4,ENSMUSG00000028137.9	Celf3	ENSMUSG00000028137.9	ENSMUST00000199884.4	protein_coding	chr3:94478295-94485318
chr3	94478281	94478329	+	G-rich	Low_complexity	Low_complexity	chr3	94478295	94478297	+	ENSMUST00000198316.4,ENSMUSG00000028137.9	Celf3	ENSMUSG00000028137.9	ENSMUST00000198316.4	protein_coding	chr3:94478296-94492188
chr3	94531762	94531873	-	RSINE1	SINE	B4	chr3	94531871	94531873	-	ENSMUST00000198902.1,ENSMUSG00000028136.15	Snx27	ENSMUSG00000028136.15	ENSMUST00000198902.1	protein_coding	chr3:94531224-94531872
chr3	94535911	94536082	-	RSINE1	SINE	B4	chr3	94535965	94535967	-	ENSMUST00000198548.1,ENSMUSG00000106061.1	Gm43773	ENSMUSG00000106061.1	ENSMUST00000198548.1	sense_intronic	chr3:94533805-94535966
chr3	94537336	94537494	+	RSINE1	SINE	B4	chr3	94537487	94537489	-	ENSMUST00000196327.1,ENSMUSG00000104631.1	Gm43774	ENSMUSG00000104631.1	ENSMUST00000196327.1	sense_intronic	chr3:94536611-94537488
chr3	94832927	94832985	+	RMER10B	LTR	ERVL	chr3	94832976	94832978	+	ENSMUST00000121556.1,ENSMUSG00000084058.1	Gm15263	ENSMUSG00000084058.1	ENSMUST00000121556.1	processed_pseudogene	chr3:94832977-94833805
chr3	94877617	94877760	-	Lx5c	LINE	L1	chr3	94877654	94877656	+	ENSMUST00000142253.1,ENSMUSG00000038902.14	Pogz	ENSMUSG00000038902.14	ENSMUST00000142253.1	protein_coding	chr3:94877655-94878966
chr3	94884783	94884884	-	PB1D9	SINE	Alu	chr3	94884842	94884844	-	ENSMUST00000134133.1,ENSMUSG00000005779.12	Psmb4	ENSMUSG00000005779.12	ENSMUST00000134133.1	protein_coding	chr3:94884322-94884843
chr3	94961997	94962144	-	B1_Mus2	SINE	Alu	chr3	94962047	94962049	-	ENSMUST00000125186.1,ENSMUSG00000087660.1	B230398E01Rik	ENSMUSG00000087660.1	ENSMUST00000125186.1	antisense	chr3:94959034-94962048
chr3	94997237	94997354	-	ID_B1	SINE	B4	chr3	94997349	94997351	-	ENSMUST00000135483.1,ENSMUSG00000084846.1	A730011C13Rik	ENSMUSG00000084846.1	ENSMUST00000135483.1	antisense	chr3:94995043-94997350
chr3	95015370	95015417	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	95015403	95015405	-	ENSMUST00000147022.7,ENSMUSG00000019338.13	Zfp687	ENSMUSG00000019338.13	ENSMUST00000147022.7	protein_coding	chr3:95006832-95015404
chr3	95078427	95078596	+	B3	SINE	B2	chr3	95078515	95078517	-	ENSMUST00000107231.1,ENSMUSG00000028126.16	Pip5k1a	ENSMUSG00000028126.16	ENSMUST00000107231.1	protein_coding	chr3:95070826-95078516
chr3	95083164	95083323	-	RSINE1	SINE	B4	chr3	95083231	95083233	-	ENSMUST00000151335.1,ENSMUSG00000028126.16	Pip5k1a	ENSMUSG00000028126.16	ENSMUST00000151335.1	protein_coding	chr3:95078105-95083232
chr3	95099500	95099606	+	U6	snRNA	snRNA	chr3	95099499	95099501	+	ENSMUST00000082656.1,ENSMUSG00000064590.1	Gm22301	ENSMUSG00000064590.1	ENSMUST00000082656.1	snRNA	chr3:95099500-95099606
chr3	95116510	95116700	-	B2_Mm1t	SINE	B2	chr3	95116525	95116527	+	ENSMUST00000152333.1,ENSMUSG00000008958.14	Vps72	ENSMUSG00000008958.14	ENSMUST00000152333.1	protein_coding	chr3:95116526-95119302
chr3	95126119	95126235	-	PB1D10	SINE	Alu	chr3	95126203	95126205	+	ENSMUST00000130545.7,ENSMUSG00000005628.12	Tmod4	ENSMUSG00000005628.12	ENSMUST00000130545.7	protein_coding	chr3:95126204-95128744
chr3	95130666	95130813	+	B2_Mm1a	SINE	B2	chr3	95130683	95130685	-	ENSMUST00000174508.1,ENSMUSG00000092607.9	Scnm1	ENSMUSG00000092607.9	ENSMUST00000174508.1	protein_coding	chr3:95129719-95130684
chr3	95131108	95131685	+	MT2B2	LTR	ERVL	chr3	95131265	95131267	-	ENSMUST00000174835.1,ENSMUSG00000092607.9	Scnm1	ENSMUSG00000092607.9	ENSMUST00000174835.1	protein_coding	chr3:95129726-95131266
chr3	95208865	95208939	+	ID	SINE	ID	chr3	95208936	95208938	-	ENSMUST00000098873.10,ENSMUSG00000038766.16	Gabpb2	ENSMUSG00000038766.16	ENSMUST00000098873.10	protein_coding	chr3:95181773-95208937
chr3	95217381	95217473	+	C-rich	Low_complexity	Low_complexity	chr3	95217456	95217458	+	ENSMUST00000181819.1,ENSMUSG00000097167.1	Gm16740	ENSMUSG00000097167.1	ENSMUST00000181819.1	antisense	chr3:95217457-95226658
chr3	95268941	95269067	-	PB1D9	SINE	Alu	chr3	95268943	95268945	-	ENSMUST00000148959.1,ENSMUSG00000015711.8	Prune1	ENSMUSG00000015711.8	ENSMUST00000148959.1	protein_coding	chr3:95265158-95268944
chr3	95285812	95285931	+	RSINE1	SINE	B4	chr3	95285838	95285840	+	ENSMUST00000143498.1,ENSMUSG00000038712.16	Mindy1	ENSMUSG00000038712.16	ENSMUST00000143498.1	protein_coding	chr3:95285839-95288014
chr3	95285952	95286402	-	MLTR14	LTR	ERV1	chr3	95286198	95286200	+	ENSMUST00000153928.1,ENSMUSG00000038712.16	Mindy1	ENSMUSG00000038712.16	ENSMUST00000153928.1	protein_coding	chr3:95286199-95287960
chr3	95291881	95292002	+	B1_Mur4	SINE	Alu	chr3	95291985	95291987	+	ENSMUST00000133762.1,ENSMUSG00000038712.16	Mindy1	ENSMUSG00000038712.16	ENSMUST00000133762.1	protein_coding	chr3:95291986-95296161
chr3	95315122	95315146	+	GC_rich	Low_complexity	Low_complexity	chr3	95315126	95315128	-	ENSMUST00000176569.2,ENSMUSG00000093424.3	6330562C20Rik	ENSMUSG00000093424.3	ENSMUST00000176569.2	antisense	chr3:95311378-95315127
chr3	95473738	95474124	-	RLTR20A4	LTR	ERVK	chr3	95474115	95474117	+	ENSMUST00000140060.1,ENSMUSG00000015522.18	Arnt	ENSMUSG00000015522.18	ENSMUST00000140060.1	protein_coding	chr3:95474116-95480232
chr3	95489368	95489463	-	Lx7	LINE	L1	chr3	95489404	95489406	+	ENSMUST00000147094.1,ENSMUSG00000015522.18	Arnt	ENSMUSG00000015522.18	ENSMUST00000147094.1	protein_coding	chr3:95489405-95490406
chr3	95734934	95734973	+	ID	SINE	ID	chr3	95734972	95734974	-	ENSMUST00000183853.1,ENSMUSG00000098737.1	Mir7014	ENSMUSG00000098737.1	ENSMUST00000183853.1	miRNA	chr3:95734911-95734973
chr3	95734973	95735086	+	PB1D7	SINE	Alu	chr3	95735017	95735019	-	ENSMUST00000144958.1,ENSMUSG00000028108.15	Ecm1	ENSMUSG00000028108.15	ENSMUST00000144958.1	protein_coding	chr3:95734149-95735018
chr3	95734973	95735086	+	PB1D7	SINE	Alu	chr3	95734972	95734974	-	ENSMUST00000183853.1,ENSMUSG00000098737.1	Mir7014	ENSMUSG00000098737.1	ENSMUST00000183853.1	miRNA	chr3:95734911-95734973
chr3	95832653	95832809	-	B1F	SINE	Alu	chr3	95832807	95832809	-	ENSMUST00000163059.1,ENSMUSG00000015748.13	Prpf3	ENSMUSG00000015748.13	ENSMUST00000163059.1	protein_coding	chr3:95830622-95832808
chr3	95846070	95846192	-	B3	SINE	B2	chr3	95846175	95846177	-	ENSMUST00000161420.1,ENSMUSG00000015748.13	Prpf3	ENSMUSG00000015748.13	ENSMUST00000161420.1	protein_coding	chr3:95843805-95846176
chr3	95863251	95863373	+	PB1D9	SINE	Alu	chr3	95863306	95863308	-	ENSMUST00000132515.1,ENSMUSG00000054312.6	Mrps21	ENSMUSG00000054312.6	ENSMUST00000132515.1	protein_coding	chr3:95862656-95863307
chr3	95939932	95940121	-	B3	SINE	B2	chr3	95940085	95940087	+	ENSMUST00000196705.1,ENSMUSG00000106262.1	Gm43375	ENSMUSG00000106262.1	ENSMUST00000196705.1	TEC	chr3:95940086-95942565
chr3	95995857	95995935	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	95995865	95995867	-	ENSMUST00000143485.1,ENSMUSG00000015745.9	Plekho1	ENSMUSG00000015745.9	ENSMUST00000143485.1	protein_coding	chr3:95991468-95995866
chr3	96198481	96198803	+	RLTRETN_Mm	LTR	ERVK	chr3	96198488	96198490	-	ENSMUST00000107099.7,ENSMUSG00000015943.11	Bola1	ENSMUSG00000015943.11	ENSMUST00000107099.7	protein_coding	chr3:96196588-96198489
chr3	96246653	96246736	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	96246684	96246686	+	ENSMUST00000176059.1,ENSMUSG00000093769.4	Hist2h3c1	ENSMUSG00000093769.4	ENSMUST00000176059.1	protein_coding	chr3:96246685-96248504
chr3	96246653	96246736	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	96246684	96246686	+	ENSMUST00000177796.1,ENSMUSG00000093769.4	Hist2h3c1	ENSMUSG00000093769.4	ENSMUST00000177796.1	protein_coding	chr3:96246685-96248509
chr3	96255453	96255488	+	C-rich	Low_complexity	Low_complexity	chr3	96255468	96255470	-	ENSMUST00000176143.1,ENSMUSG00000093507.1	Gm20627	ENSMUSG00000093507.1	ENSMUST00000176143.1	processed_transcript	chr3:96254621-96255469
chr3	96328424	96328591	+	U1	snRNA	snRNA	chr3	96328424	96328426	+	ENSMUST00000102024.1,ENSMUSG00000095701.1	Gm24830	ENSMUSG00000095701.1	ENSMUST00000102024.1	snRNA	chr3:96328425-96328590
chr3	96345096	96345333	-	MER67B	LTR	ERV1	chr3	96345286	96345288	+	ENSMUST00000199348.4,ENSMUSG00000097851.5	Platr30	ENSMUSG00000097851.5	ENSMUST00000199348.4	lincRNA	chr3:96345287-96358424
chr3	96359952	96360117	-	U1	snRNA	snRNA	chr3	96360116	96360118	-	ENSMUST00000178250.1,ENSMUSG00000095580.1	Rnu1b1	ENSMUSG00000095580.1	ENSMUST00000178250.1	snRNA	chr3:96359953-96360117
chr3	96374020	96374185	+	U1	snRNA	snRNA	chr3	96374020	96374022	+	ENSMUST00000178073.1,ENSMUSG00000093834.1	Rnu1b2	ENSMUSG00000093834.1	ENSMUST00000178073.1	snRNA	chr3:96374021-96374185
chr3	96388859	96389054	+	MER67B	LTR	ERV1	chr3	96388863	96388865	-	ENSMUST00000180437.7,ENSMUSG00000097420.7	Gm17575	ENSMUSG00000097420.7	ENSMUST00000180437.7	lincRNA	chr3:96375646-96388864
chr3	96422732	96422897	+	U1	snRNA	snRNA	chr3	96422732	96422734	+	ENSMUST00000083374.2,ENSMUSG00000095513.1	Gm24136	ENSMUSG00000095513.1	ENSMUST00000083374.2	snRNA	chr3:96422733-96422897
chr3	96450445	96450611	+	U1	snRNA	snRNA	chr3	96450445	96450447	+	ENSMUST00000083360.1,ENSMUSG00000096838.1	Gm26232	ENSMUSG00000096838.1	ENSMUST00000083360.1	snRNA	chr3:96450446-96450611
chr3	96455949	96456101	-	RMER1B	Other	Other	chr3	96455948	96455950	-	ENSMUST00000198773.1,ENSMUSG00000104642.1	Gm9207	ENSMUSG00000104642.1	ENSMUST00000198773.1	processed_pseudogene	chr3:96454835-96455949
chr3	96460023	96460189	-	U1	snRNA	snRNA	chr3	96460188	96460190	-	ENSMUST00000083839.1,ENSMUSG00000065773.1	Rnu1b6	ENSMUSG00000065773.1	ENSMUST00000083839.1	snRNA	chr3:96460024-96460189
chr3	96485160	96485235	+	5S	rRNA	rRNA	chr3	96485160	96485162	+	ENSMUST00000183561.1,ENSMUSG00000098392.1	Gm28001	ENSMUSG00000098392.1	ENSMUST00000183561.1	rRNA	chr3:96485161-96485277
chr3	96486554	96486719	-	U1	snRNA	snRNA	chr3	96486718	96486720	-	ENSMUST00000177643.1,ENSMUSG00000095260.1	Gm25890	ENSMUSG00000095260.1	ENSMUST00000177643.1	snRNA	chr3:96486555-96486719
chr3	96488728	96488893	+	U1	snRNA	snRNA	chr3	96488728	96488730	+	ENSMUST00000178300.1,ENSMUSG00000094812.1	Gm22614	ENSMUSG00000094812.1	ENSMUST00000178300.1	snRNA	chr3:96488729-96488893
chr3	96566628	96567002	-	MTD	LTR	ERVL-MaLR	chr3	96566800	96566802	-	ENSMUST00000107095.2,ENSMUSG00000074398.5	Gm15441	ENSMUSG00000074398.5	ENSMUST00000107095.2	antisense	chr3:96555788-96566801
chr3	96680013	96680139	+	RSINE1	SINE	B4	chr3	96680092	96680094	+	ENSMUST00000130429.2,ENSMUSG00000038354.13	Ankrd35	ENSMUSG00000038354.13	ENSMUST00000130429.2	protein_coding	chr3:96680093-96683202
chr3	96696998	96697080	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	96697075	96697077	+	ENSMUST00000162778.2,ENSMUSG00000028101.18	Pias3	ENSMUSG00000028101.18	ENSMUST00000162778.2	protein_coding	chr3:96697076-96699692
chr3	96725296	96725442	-	B1_Mus2	SINE	Alu	chr3	96725319	96725321	-	ENSMUST00000197075.1,ENSMUSG00000104795.1	Gm42783	ENSMUSG00000104795.1	ENSMUST00000197075.1	TEC	chr3:96724526-96725320
chr3	97092705	97093196	+	MURVY-LTR	LTR	ERV1	chr3	97092784	97092786	-	ENSMUST00000197696.1,ENSMUSG00000104766.1	4930573H18Rik	ENSMUSG00000104766.1	ENSMUST00000197696.1	antisense	chr3:97046656-97092785
chr3	97126108	97126373	-	L1MA8	LINE	L1	chr3	97126112	97126114	-	ENSMUST00000199013.1,ENSMUSG00000106324.1	Gm43222	ENSMUSG00000106324.1	ENSMUST00000199013.1	processed_pseudogene	chr3:97125511-97126113
chr3	97167170	97167435	-	MTEa	LTR	ERVL-MaLR	chr3	97167376	97167378	+	ENSMUST00000149900.1,ENSMUSG00000028093.15	Acp6	ENSMUSG00000028093.15	ENSMUST00000149900.1	protein_coding	chr3:97167377-97168452
chr3	97172565	97172717	-	MER58A	DNA	hAT-Charlie	chr3	97172641	97172643	+	ENSMUST00000143234.1,ENSMUSG00000028093.15	Acp6	ENSMUSG00000028093.15	ENSMUST00000143234.1	protein_coding	chr3:97172642-97176518
chr3	97227490	97227598	+	GC_rich	Low_complexity	Low_complexity	chr3	97227534	97227536	-	ENSMUST00000135247.5,ENSMUSG00000038256.15	Bcl9	ENSMUSG00000038256.15	ENSMUST00000135247.5	protein_coding	chr3:97216553-97227535
chr3	97674676	97675005	-	RMER19A	LTR	ERVK	chr3	97674693	97674695	-	ENSMUST00000166227.2,ENSMUSG00000090441.2	Gm17651	ENSMUSG00000090441.2	ENSMUST00000166227.2	protein_coding	chr3:97673031-97674694
chr3	98248540	98248605	+	B4	SINE	B4	chr3	98248598	98248600	+	ENSMUST00000199771.1,ENSMUSG00000104842.1	Gm42821	ENSMUSG00000104842.1	ENSMUST00000199771.1	processed_pseudogene	chr3:98248599-98249087
chr3	98286975	98287006	+	(T)n	Simple_repeat	Simple_repeat	chr3	98286987	98286989	+	ENSMUST00000196040.1,ENSMUSG00000105909.1	Gm43189	ENSMUSG00000105909.1	ENSMUST00000196040.1	sense_intronic	chr3:98286988-98290056
chr3	98447996	98448990	+	L1Md_F2	LINE	L1	chr3	98448975	98448977	-	ENSMUST00000187850.1,ENSMUSG00000106107.1	Gm43190	ENSMUSG00000106107.1	ENSMUST00000187850.1	sense_intronic	chr3:98447198-98448976
chr3	98456998	98457111	-	MER21B	LTR	ERVL	chr3	98457042	98457044	-	ENSMUST00000188356.2,ENSMUSG00000090817.7	Gm4450	ENSMUSG00000090817.7	ENSMUST00000188356.2	protein_coding	chr3:98446608-98457043
chr3	98510276	98510552	-	MER21B	LTR	ERVL	chr3	98510513	98510515	-	ENSMUST00000196861.1,ENSMUSG00000095143.5	Hsd3b4	ENSMUSG00000095143.5	ENSMUST00000196861.1	protein_coding	chr3:98499082-98510514
chr3	98563747	98564023	-	MER21B	LTR	ERVL	chr3	98563984	98563986	-	ENSMUST00000058728.9,ENSMUSG00000095388.7	Gm10681	ENSMUSG00000095388.7	ENSMUST00000058728.9	protein_coding	chr3:98552553-98563985
chr3	98588768	98588865	-	MER21B	LTR	ERVL	chr3	98588806	98588808	-	ENSMUST00000178221.3,ENSMUSG00000095388.7	Gm10681	ENSMUSG00000095388.7	ENSMUST00000178221.3	protein_coding	chr3:98552553-98588807
chr3	98762221	98762524	-	ORR1D1	LTR	ERVL-MaLR	chr3	98762403	98762405	-	ENSMUST00000146196.3,ENSMUSG00000062410.14	Hsd3b3	ENSMUSG00000062410.14	ENSMUST00000146196.3	protein_coding	chr3:98742443-98762404
chr3	98762943	98763241	-	ORR1D1	LTR	ERVL-MaLR	chr3	98763126	98763128	-	ENSMUST00000107018.7,ENSMUSG00000062410.14	Hsd3b3	ENSMUSG00000062410.14	ENSMUST00000107018.7	protein_coding	chr3:98741523-98763127
chr3	98762943	98763241	-	ORR1D1	LTR	ERVL-MaLR	chr3	98763052	98763054	-	ENSMUST00000107019.7,ENSMUSG00000062410.14	Hsd3b3	ENSMUSG00000062410.14	ENSMUST00000107019.7	protein_coding	chr3:98741524-98763053
chr3	98762943	98763241	-	ORR1D1	LTR	ERVL-MaLR	chr3	98763091	98763093	-	ENSMUST00000125483.4,ENSMUSG00000062410.14	Hsd3b3	ENSMUSG00000062410.14	ENSMUST00000125483.4	protein_coding	chr3:98757670-98763092
chr3	98814395	98814542	-	MT2A	LTR	ERVL	chr3	98814442	98814444	-	ENSMUST00000029463.12,ENSMUSG00000027869.14	Hsd3b6	ENSMUSG00000027869.14	ENSMUST00000029463.12	protein_coding	chr3:98805504-98814443
chr3	98814395	98814542	-	MT2A	LTR	ERVL	chr3	98814421	98814423	-	ENSMUST00000196706.1,ENSMUSG00000027869.14	Hsd3b6	ENSMUSG00000027869.14	ENSMUST00000196706.1	protein_coding	chr3:98806477-98814422
chr3	99049587	99050624	-	L1_Mus3	LINE	L1	chr3	99049821	99049823	+	ENSMUST00000155224.2,ENSMUSG00000086833.2	Gm12440	ENSMUSG00000086833.2	ENSMUST00000155224.2	lincRNA	chr3:99049822-99053744
chr3	99707739	99707847	-	U6	snRNA	snRNA	chr3	99707846	99707848	-	ENSMUST00000082956.1,ENSMUSG00000064890.1	Gm22505	ENSMUSG00000064890.1	ENSMUST00000082956.1	snRNA	chr3:99707740-99707847
chr3	100022544	100022591	+	(T)n	Simple_repeat	Simple_repeat	chr3	100022569	100022571	+	ENSMUST00000152586.1,ENSMUSG00000027867.10	Spag17	ENSMUSG00000027867.10	ENSMUST00000152586.1	protein_coding	chr3:100022570-100027664
chr3	100200677	100200719	+	MIR	SINE	MIR	chr3	100200686	100200688	+	ENSMUST00000200036.1,ENSMUSG00000027865.10	Gdap2	ENSMUSG00000027865.10	ENSMUST00000200036.1	protein_coding	chr3:100200687-100202470
chr3	100302999	100303511	+	MTC-int	LTR	ERVL-MaLR	chr3	100303287	100303289	+	ENSMUST00000082639.1,ENSMUSG00000064573.1	Gm25802	ENSMUSG00000064573.1	ENSMUST00000082639.1	snoRNA	chr3:100303288-100303364
chr3	100437802	100437834	+	(TTTG)n	Simple_repeat	Simple_repeat	chr3	100437833	100437835	+	ENSMUST00000199065.1,ENSMUSG00000106639.1	Gm43121	ENSMUSG00000106639.1	ENSMUST00000199065.1	lincRNA	chr3:100437834-100439138
chr3	100489241	100489328	+	GC_rich	Low_complexity	Low_complexity	chr3	100489323	100489325	-	ENSMUST00000061455.8,ENSMUSG00000044468.14	Tent5c	ENSMUSG00000044468.14	ENSMUST00000061455.8	protein_coding	chr3:100468057-100489324
chr3	100497376	100497713	-	ORR1B2	LTR	ERVL-MaLR	chr3	100497428	100497430	+	ENSMUST00000199168.1,ENSMUSG00000104943.1	Gm42868	ENSMUSG00000104943.1	ENSMUST00000199168.1	sense_intronic	chr3:100497429-100500125
chr3	100692493	100692933	+	L1MEi	LINE	L1	chr3	100692705	100692707	+	ENSMUST00000198003.1,ENSMUSG00000106227.1	Gm43464	ENSMUSG00000106227.1	ENSMUST00000198003.1	lincRNA	chr3:100692706-100700084
chr3	100738493	100738713	-	7SK	RNA	RNA	chr3	100738712	100738714	-	ENSMUST00000157134.1,ENSMUSG00000087759.1	Gm23465	ENSMUSG00000087759.1	ENSMUST00000157134.1	misc_RNA	chr3:100738452-100738713
chr3	100946357	100946713	-	Lx10	LINE	L1	chr3	100946356	100946358	-	ENSMUST00000145811.1,ENSMUSG00000033222.16	Ttf2	ENSMUSG00000033222.16	ENSMUST00000145811.1	protein_coding	chr3:100941855-100946357
chr3	101087375	101087514	-	L1Md_A	LINE	L1	chr3	101087392	101087394	-	ENSMUST00000200367.1,ENSMUSG00000105717.1	Gm43465	ENSMUSG00000105717.1	ENSMUST00000200367.1	sense_intronic	chr3:101084592-101087393
chr3	101280376	101280538	+	MIRc	SINE	MIR	chr3	101280388	101280390	-	ENSMUST00000156103.1,ENSMUSG00000027863.8	Cd2	ENSMUSG00000027863.8	ENSMUST00000156103.1	protein_coding	chr3:101275908-101280389
chr3	101377030	101377095	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	101377082	101377084	+	ENSMUST00000198995.4,ENSMUSG00000042035.11	Igsf3	ENSMUSG00000042035.11	ENSMUST00000198995.4	protein_coding	chr3:101377083-101379540
chr3	101377030	101377095	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr3	101377082	101377084	+	ENSMUST00000043983.10,ENSMUSG00000042035.11	Igsf3	ENSMUSG00000042035.11	ENSMUST00000043983.10	protein_coding	chr3:101377083-101463059
chr3	101411312	101411564	-	RLTR28	LTR	ERVL	chr3	101411538	101411540	+	ENSMUST00000198414.1,ENSMUSG00000105611.1	Gm42938	ENSMUSG00000105611.1	ENSMUST00000198414.1	sense_intronic	chr3:101411539-101412610
chr3	101848947	101848971	+	(TG)n	Simple_repeat	Simple_repeat	chr3	101848958	101848960	-	ENSMUST00000118411.1,ENSMUSG00000044313.13	Mab21l3	ENSMUSG00000044313.13	ENSMUST00000118411.1	protein_coding	chr3:101813683-101848959
chr3	102074319	102074533	+	B3A	SINE	B2	chr3	102074452	102074454	+	ENSMUST00000198794.1,ENSMUSG00000105346.1	Gm18894	ENSMUSG00000105346.1	ENSMUST00000198794.1	processed_pseudogene	chr3:102074453-102075146
chr3	102129814	102129957	+	RSINE1	SINE	B4	chr3	102129937	102129939	+	ENSMUST00000196994.1,ENSMUSG00000105342.1	Gm43244	ENSMUSG00000105342.1	ENSMUST00000196994.1	sense_intronic	chr3:102129938-102131222
chr3	102134510	102134693	+	ID_B1	SINE	B4	chr3	102134614	102134616	+	ENSMUST00000197326.1,ENSMUSG00000106296.1	4632404M16Rik	ENSMUSG00000106296.1	ENSMUST00000197326.1	sense_intronic	chr3:102134615-102137496
chr3	102490888	102491537	+	MER44D	DNA	TcMar-Tigger	chr3	102491341	102491343	+	ENSMUST00000197086.1,ENSMUSG00000106121.1	Gm42679	ENSMUSG00000106121.1	ENSMUST00000197086.1	sense_intronic	chr3:102491342-102494247
chr3	102734910	102734962	+	GC_rich	Low_complexity	Low_complexity	chr3	102734956	102734958	+	ENSMUST00000196611.4,ENSMUSG00000027858.13	Tspan2	ENSMUSG00000027858.13	ENSMUST00000196611.4	protein_coding	chr3:102734957-102769021
chr3	102828682	102830495	+	L1Md_F3	LINE	L1	chr3	102830493	102830495	+	ENSMUST00000198433.1,ENSMUSG00000105672.1	Gm42816	ENSMUSG00000105672.1	ENSMUST00000198433.1	unprocessed_pseudogene	chr3:102830494-102830818
chr3	102832666	102838338	+	L1Md_T	LINE	L1	chr3	102833882	102833884	-	ENSMUST00000198651.1,ENSMUSG00000027855.13	Sycp1	ENSMUSG00000027855.13	ENSMUST00000198651.1	protein_coding	chr3:102818705-102833883
chr3	103029075	103029118	+	(T)n	Simple_repeat	Simple_repeat	chr3	103029094	103029096	+	ENSMUST00000196521.1,ENSMUSG00000068823.10	Csde1	ENSMUSG00000068823.10	ENSMUST00000196521.1	protein_coding	chr3:103029095-103030897
chr3	103039650	103039834	-	MER5A	DNA	hAT-Charlie	chr3	103039739	103039741	+	ENSMUST00000197154.4,ENSMUSG00000068823.10	Csde1	ENSMUSG00000068823.10	ENSMUST00000197154.4	protein_coding	chr3:103039740-103044639
chr3	103071161	103071195	+	(T)n	Simple_repeat	Simple_repeat	chr3	103071173	103071175	+	ENSMUST00000196302.1,ENSMUSG00000104671.1	Gm43062	ENSMUSG00000104671.1	ENSMUST00000196302.1	lincRNA	chr3:103071174-103072492
chr3	103082875	103083106	+	7SK	RNA	RNA	chr3	103082875	103082877	+	ENSMUST00000158450.1,ENSMUSG00000089075.1	Gm23820	ENSMUSG00000089075.1	ENSMUST00000158450.1	misc_RNA	chr3:103082876-103083175
chr3	103093755	103093867	-	ID_B1	SINE	B4	chr3	103093778	103093780	+	ENSMUST00000199407.1,ENSMUSG00000070385.12	Ampd1	ENSMUSG00000070385.12	ENSMUST00000199407.1	protein_coding	chr3:103093779-103094806
chr3	103096579	103096794	-	B2_Mm1a	SINE	B2	chr3	103096745	103096747	+	ENSMUST00000198198.1,ENSMUSG00000105731.1	Gm43063	ENSMUSG00000105731.1	ENSMUST00000198198.1	sense_intronic	chr3:103096746-103097826
chr3	103198950	103199229	+	RMER6D	LTR	ERVK	chr3	103198974	103198976	-	ENSMUST00000090704.4,ENSMUSG00000054379.7	2410024N13Rik	ENSMUSG00000054379.7	ENSMUST00000090704.4	pseudogene	chr3:103198226-103198975
chr3	103427436	103427543	+	U6	snRNA	snRNA	chr3	103427436	103427438	+	ENSMUST00000083855.1,ENSMUSG00000065789.1	Gm25869	ENSMUSG00000065789.1	ENSMUST00000083855.1	snRNA	chr3:103427437-103427543
chr3	103445696	103445800	-	U6	snRNA	snRNA	chr3	103445799	103445801	-	ENSMUST00000083095.1,ENSMUSG00000065029.1	Gm25199	ENSMUSG00000065029.1	ENSMUST00000083095.1	snRNA	chr3:103445697-103445800
chr3	103666555	103666729	+	(CATA)n	Simple_repeat	Simple_repeat	chr3	103666626	103666628	-	ENSMUST00000122559.1,ENSMUSG00000084508.1	Gm25325	ENSMUSG00000084508.1	ENSMUST00000122559.1	miRNA	chr3:103666542-103666627
chr3	103732530	103732668	+	B1_Mus1	SINE	Alu	chr3	103732552	103732554	-	ENSMUST00000169286.1,ENSMUSG00000027848.12	Olfml3	ENSMUSG00000027848.12	ENSMUST00000169286.1	protein_coding	chr3:103731680-103732553
chr3	103738001	103738024	+	GC_rich	Low_complexity	Low_complexity	chr3	103738000	103738002	-	ENSMUST00000029440.9,ENSMUSG00000027848.12	Olfml3	ENSMUSG00000027848.12	ENSMUST00000029440.9	protein_coding	chr3:103731665-103738001
chr3	103782905	103783036	-	B1_Mus1	SINE	Alu	chr3	103782978	103782980	-	ENSMUST00000196896.1,ENSMUSG00000104874.1	Gm43387	ENSMUSG00000104874.1	ENSMUST00000196896.1	sense_intronic	chr3:103781914-103782979
chr3	103851822	103852109	-	B4A	SINE	B4	chr3	103851967	103851969	+	ENSMUST00000196184.1,ENSMUSG00000044165.12	Bcl2l15	ENSMUSG00000044165.12	ENSMUST00000196184.1	protein_coding	chr3:103851968-103853666
chr3	103863140	103863171	+	(CAAA)n	Simple_repeat	Simple_repeat	chr3	103863165	103863167	+	ENSMUST00000141652.1,ENSMUSG00000084760.1	Gm15472	ENSMUSG00000084760.1	ENSMUST00000141652.1	sense_intronic	chr3:103863166-103864423
chr3	103864679	103864735	+	T-rich	Low_complexity	Low_complexity	chr3	103864705	103864707	+	ENSMUST00000198971.1,ENSMUSG00000105986.1	Gm43065	ENSMUSG00000105986.1	ENSMUST00000198971.1	sense_intronic	chr3:103864706-103866797
chr3	103877954	103878217	-	B4A	SINE	B4	chr3	103878056	103878058	+	ENSMUST00000197997.1,ENSMUSG00000027843.13	Ptpn22	ENSMUSG00000027843.13	ENSMUST00000197997.1	protein_coding	chr3:103878057-103879889
chr3	104062038	104063249	+	L1Md_F3	LINE	L1	chr3	104062262	104062264	-	ENSMUST00000199201.1,ENSMUSG00000052539.15	Magi3	ENSMUSG00000052539.15	ENSMUST00000199201.1	protein_coding	chr3:104060459-104062263
chr3	104079291	104079533	-	L1M5	LINE	L1	chr3	104079501	104079503	-	ENSMUST00000197819.1,ENSMUSG00000106371.1	9530097N15Rik	ENSMUSG00000106371.1	ENSMUST00000197819.1	sense_intronic	chr3:104078435-104079502
chr3	104092380	104092482	+	U6	snRNA	snRNA	chr3	104092380	104092382	+	ENSMUST00000157391.1,ENSMUSG00000088016.1	Gm23830	ENSMUSG00000088016.1	ENSMUST00000157391.1	snRNA	chr3:104092381-104092482
chr3	104115667	104115784	+	B1_Mus2	SINE	Alu	chr3	104115694	104115696	-	ENSMUST00000198104.1,ENSMUSG00000105083.1	Gm42699	ENSMUSG00000105083.1	ENSMUST00000198104.1	sense_intronic	chr3:104114039-104115695
chr3	104139995	104140126	-	B1F	SINE	Alu	chr3	104140000	104140002	-	ENSMUST00000199515.1,ENSMUSG00000106443.1	Gm42702	ENSMUSG00000106443.1	ENSMUST00000199515.1	sense_intronic	chr3:104135785-104140001
chr3	104151427	104151961	-	L1_Mus3	LINE	L1	chr3	104151704	104151706	-	ENSMUST00000200312.1,ENSMUSG00000105846.1	Gm43258	ENSMUSG00000105846.1	ENSMUST00000200312.1	sense_intronic	chr3:104149756-104151705
chr3	104182863	104183076	+	Lx8	LINE	L1	chr3	104183040	104183042	-	ENSMUST00000197378.1,ENSMUSG00000105933.1	Gm43260	ENSMUSG00000105933.1	ENSMUST00000197378.1	sense_intronic	chr3:104180612-104183041
chr3	104190070	104190255	+	Lx8	LINE	L1	chr3	104190192	104190194	-	ENSMUST00000199995.1,ENSMUSG00000105818.1	Gm43256	ENSMUSG00000105818.1	ENSMUST00000199995.1	sense_intronic	chr3:104187103-104190193
chr3	104219991	104220221	+	GC_rich	Low_complexity	Low_complexity	chr3	104220102	104220104	-	ENSMUST00000121198.7,ENSMUSG00000052539.15	Magi3	ENSMUSG00000052539.15	ENSMUST00000121198.7	protein_coding	chr3:104013625-104220103
chr3	104476720	104476783	-	MER31A	LTR	ERV1	chr3	104476729	104476731	-	ENSMUST00000199385.1,ENSMUSG00000105304.1	Gm43696	ENSMUSG00000105304.1	ENSMUST00000199385.1	sense_intronic	chr3:104470660-104476730
chr3	104601157	104601275	-	U6	snRNA	snRNA	chr3	104601238	104601240	-	ENSMUST00000122704.1,ENSMUSG00000084653.1	Gm26091	ENSMUSG00000084653.1	ENSMUST00000122704.1	snRNA	chr3:104601158-104601239
chr3	104642987	104643072	-	ID_B1	SINE	B4	chr3	104642993	104642995	+	ENSMUST00000196766.1,ENSMUSG00000105199.1	Gm43581	ENSMUSG00000105199.1	ENSMUST00000196766.1	sense_intronic	chr3:104642994-104645857
chr3	104646214	104646269	+	PB1D11	SINE	Alu	chr3	104646240	104646242	+	ENSMUST00000199375.1,ENSMUSG00000106287.1	Gm43585	ENSMUSG00000106287.1	ENSMUST00000199375.1	sense_intronic	chr3:104646241-104647643
chr3	104700870	104700958	+	U6	snRNA	snRNA	chr3	104700869	104700871	+	ENSMUST00000158827.1,ENSMUSG00000089452.1	Gm24223	ENSMUSG00000089452.1	ENSMUST00000158827.1	snRNA	chr3:104700870-104700959
chr3	104827869	104828004	-	B1_Mus2	SINE	Alu	chr3	104827903	104827905	-	ENSMUST00000197199.1,ENSMUSG00000106251.1	Gm42658	ENSMUSG00000106251.1	ENSMUST00000197199.1	sense_intronic	chr3:104826330-104827904
chr3	105733822	105733897	-	ID2	SINE	ID	chr3	105733876	105733878	-	ENSMUST00000198544.1,ENSMUSG00000105677.1	Gm43328	ENSMUSG00000105677.1	ENSMUST00000198544.1	sense_intronic	chr3:105732444-105733877
chr3	105770197	105770266	+	RLTR20A4	LTR	ERVK	chr3	105770196	105770198	-	ENSMUST00000200120.1,ENSMUSG00000105842.1	Gm43329	ENSMUSG00000105842.1	ENSMUST00000200120.1	sense_intronic	chr3:105766966-105770197
chr3	105784993	105785176	+	B2_Mm2	SINE	B2	chr3	105785026	105785028	-	ENSMUST00000199706.1,ENSMUSG00000106341.1	Gm43330	ENSMUSG00000106341.1	ENSMUST00000199706.1	sense_intronic	chr3:105782875-105785027
chr3	105788948	105789774	+	MTD-int	LTR	ERVL-MaLR	chr3	105789320	105789322	-	ENSMUST00000197991.1,ENSMUSG00000104910.1	Gm43331	ENSMUSG00000104910.1	ENSMUST00000197991.1	sense_intronic	chr3:105787633-105789321
chr3	105801310	105801354	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	105801335	105801337	-	ENSMUST00000090678.10,ENSMUSG00000068798.10	Rap1a	ENSMUSG00000068798.10	ENSMUST00000090678.10	protein_coding	chr3:105727267-105801336
chr3	105801310	105801354	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	105801309	105801311	-	ENSMUST00000198004.1,ENSMUSG00000068798.10	Rap1a	ENSMUSG00000068798.10	ENSMUST00000198004.1	protein_coding	chr3:105737896-105801310
chr3	105816567	105816815	+	RLTR20B5_MM	LTR	ERVK	chr3	105816612	105816614	+	ENSMUST00000196002.1,ENSMUSG00000104835.4	Gm5547	ENSMUSG00000104835.4	ENSMUST00000196002.1	lincRNA	chr3:105816613-105817357
chr3	105977201	105977338	-	B1_Mus2	SINE	Alu	chr3	105977290	105977292	+	ENSMUST00000164055.1,ENSMUSG00000074340.9	Ovgp1	ENSMUSG00000074340.9	ENSMUST00000164055.1	protein_coding	chr3:105977291-105980136
chr3	106009368	106009407	+	A-rich	Low_complexity	Low_complexity	chr3	106009386	106009388	-	ENSMUST00000197165.1,ENSMUSG00000104592.1	Gm42721	ENSMUSG00000104592.1	ENSMUST00000197165.1	sense_intronic	chr3:106007865-106009387
chr3	106477773	106478746	+	RLTR13D3A1	LTR	ERVK	chr3	106478282	106478284	+	ENSMUST00000191737.1,ENSMUSG00000104350.1	Gm38244	ENSMUSG00000104350.1	ENSMUST00000191737.1	TEC	chr3:106478283-106480868
chr3	106483437	106483461	+	(A)n	Simple_repeat	Simple_repeat	chr3	106483436	106483438	-	ENSMUST00000164330.1,ENSMUSG00000091575.2	2010016I18Rik	ENSMUSG00000091575.2	ENSMUST00000164330.1	processed_transcript	chr3:106482013-106483437
chr3	106483437	106483461	+	(A)n	Simple_repeat	Simple_repeat	chr3	106483460	106483462	-	ENSMUST00000191570.1,ENSMUSG00000091575.2	2010016I18Rik	ENSMUSG00000091575.2	ENSMUST00000191570.1	processed_transcript	chr3:106482013-106483461
chr3	106493174	106493211	+	(TTTA)n	Simple_repeat	Simple_repeat	chr3	106493174	106493176	+	ENSMUST00000195305.1,ENSMUSG00000027901.12	Dennd2d	ENSMUSG00000027901.12	ENSMUST00000195305.1	protein_coding	chr3:106493175-106495299
chr3	106589182	106589715	-	RLTR6B_Mm	LTR	ERV1	chr3	106589259	106589261	+	ENSMUST00000192296.1,ENSMUSG00000103053.1	Gm38271	ENSMUSG00000103053.1	ENSMUST00000192296.1	TEC	chr3:106589260-106590862
chr3	106879153	106879501	-	ORR1A0	LTR	ERVL-MaLR	chr3	106879360	106879362	-	ENSMUST00000197932.1,ENSMUSG00000105102.1	Gm35507	ENSMUSG00000105102.1	ENSMUST00000197932.1	lincRNA	chr3:106827307-106879361
chr3	107101553	107101602	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr3	107101566	107101568	+	ENSMUST00000038695.5,ENSMUSG00000040724.5	Kcna2	ENSMUSG00000040724.5	ENSMUST00000038695.5	protein_coding	chr3:107101567-107115005
chr3	107230484	107230648	-	MIR	SINE	MIR	chr3	107230613	107230615	+	ENSMUST00000179399.2,ENSMUSG00000094613.2	A630076J17Rik	ENSMUSG00000094613.2	ENSMUST00000179399.2	protein_coding	chr3:107230614-107234723
chr3	107415859	107416195	-	7SK	RNA	RNA	chr3	107416194	107416196	-	ENSMUST00000122691.1,ENSMUSG00000084640.1	Gm24383	ENSMUSG00000084640.1	ENSMUST00000122691.1	misc_RNA	chr3:107415863-107416195
chr3	107833486	107833620	+	B1F	SINE	Alu	chr3	107833538	107833540	-	ENSMUST00000198171.1,ENSMUSG00000106426.1	Gm36211	ENSMUSG00000106426.1	ENSMUST00000198171.1	lincRNA	chr3:107820221-107833539
chr3	107943398	107943447	+	G-rich	Low_complexity	Low_complexity	chr3	107943412	107943414	-	ENSMUST00000106681.2,ENSMUSG00000068762.11	Gstm6	ENSMUSG00000068762.11	ENSMUST00000106681.2	protein_coding	chr3:107940994-107943413
chr3	108077790	108078074	+	B4A	SINE	B4	chr3	108077894	108077896	-	ENSMUST00000125467.2,ENSMUSG00000027889.17	Ampd2	ENSMUSG00000027889.17	ENSMUST00000125467.2	protein_coding	chr3:108076613-108077895
chr3	108097159	108097254	-	PB1D10	SINE	Alu	chr3	108097242	108097244	+	ENSMUST00000130013.1,ENSMUSG00000009108.15	Gnat2	ENSMUSG00000009108.15	ENSMUST00000130013.1	protein_coding	chr3:108097243-108101291
chr3	108166372	108166474	+	(GA)n	Simple_repeat	Simple_repeat	chr3	108166442	108166444	+	ENSMUST00000143109.1,ENSMUSG00000085318.1	Gm12524	ENSMUSG00000085318.1	ENSMUST00000143109.1	lincRNA	chr3:108166443-108185907
chr3	108186311	108186339	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	108186334	108186336	+	ENSMUST00000050909.6,ENSMUSG00000050947.9	Amigo1	ENSMUSG00000050947.9	ENSMUST00000050909.6	protein_coding	chr3:108186335-108191776
chr3	108186339	108186359	+	GC_rich	Low_complexity	Low_complexity	chr3	108186349	108186351	+	ENSMUST00000106659.2,ENSMUSG00000050947.9	Amigo1	ENSMUSG00000050947.9	ENSMUST00000106659.2	protein_coding	chr3:108186350-108191777
chr3	108186339	108186359	+	GC_rich	Low_complexity	Low_complexity	chr3	108186357	108186359	+	ENSMUST00000106656.1,ENSMUSG00000050947.9	Amigo1	ENSMUSG00000050947.9	ENSMUST00000106656.1	protein_coding	chr3:108186358-108192286
chr3	108210473	108210520	+	GC_rich	Low_complexity	Low_complexity	chr3	108210485	108210487	-	ENSMUST00000117409.7,ENSMUSG00000048997.17	Atxn7l2	ENSMUSG00000048997.17	ENSMUST00000117409.7	protein_coding	chr3:108202222-108210486
chr3	108284076	108284106	+	GC_rich	Low_complexity	Low_complexity	chr3	108284081	108284083	+	ENSMUST00000135636.5,ENSMUSG00000068747.14	Sort1	ENSMUSG00000068747.14	ENSMUST00000135636.5	protein_coding	chr3:108284082-108361443
chr3	108284076	108284106	+	GC_rich	Low_complexity	Low_complexity	chr3	108284090	108284092	+	ENSMUST00000102632.6,ENSMUSG00000068747.14	Sort1	ENSMUSG00000068747.14	ENSMUST00000102632.6	protein_coding	chr3:108284091-108361511
chr3	108385968	108386113	+	B1_Mus1	SINE	Alu	chr3	108386064	108386066	+	ENSMUST00000128962.1,ENSMUSG00000068744.12	Psrc1	ENSMUSG00000068744.12	ENSMUST00000128962.1	protein_coding	chr3:108386065-108386712
chr3	108534747	108534952	-	B3	SINE	B2	chr3	108534819	108534821	-	ENSMUST00000195529.1,ENSMUSG00000103761.1	Gm37859	ENSMUSG00000103761.1	ENSMUST00000195529.1	TEC	chr3:108532648-108534820
chr3	108536517	108536540	+	(A)n	Simple_repeat	Simple_repeat	chr3	108536535	108536537	-	ENSMUST00000106625.9,ENSMUSG00000040412.16	5330417C22Rik	ENSMUSG00000040412.16	ENSMUST00000106625.9	protein_coding	chr3:108455694-108536536
chr3	108536517	108536540	+	(A)n	Simple_repeat	Simple_repeat	chr3	108536516	108536518	-	ENSMUST00000048012.12,ENSMUSG00000040412.16	5330417C22Rik	ENSMUSG00000040412.16	ENSMUST00000048012.12	protein_coding	chr3:108458069-108536517
chr3	108536517	108536540	+	(A)n	Simple_repeat	Simple_repeat	chr3	108536521	108536523	-	ENSMUST00000185128.7,ENSMUSG00000040412.16	5330417C22Rik	ENSMUSG00000040412.16	ENSMUST00000185128.7	protein_coding	chr3:108458069-108536522
chr3	108536517	108536540	+	(A)n	Simple_repeat	Simple_repeat	chr3	108536526	108536528	-	ENSMUST00000106626.2,ENSMUSG00000040412.16	5330417C22Rik	ENSMUSG00000040412.16	ENSMUST00000106626.2	protein_coding	chr3:108458175-108536527
chr3	108567286	108567408	+	PB1D9	SINE	Alu	chr3	108567382	108567384	-	ENSMUST00000174977.1,ENSMUSG00000092718.1	Gm22860	ENSMUSG00000092718.1	ENSMUST00000174977.1	miRNA	chr3:108567310-108567383
chr3	108663080	108663413	-	ORR1A4	LTR	ERVL-MaLR	chr3	108663187	108663189	+	ENSMUST00000139016.2,ENSMUSG00000027884.16	Clcc1	ENSMUSG00000027884.16	ENSMUST00000139016.2	protein_coding	chr3:108663188-108668827
chr3	108667784	108667869	-	PB1D10	SINE	Alu	chr3	108667850	108667852	+	ENSMUST00000156811.2,ENSMUSG00000027884.16	Clcc1	ENSMUSG00000027884.16	ENSMUST00000156811.2	protein_coding	chr3:108667851-108668833
chr3	108797612	108797812	+	B3A	SINE	B2	chr3	108797783	108797785	-	ENSMUST00000124903.1,ENSMUSG00000027882.18	Stxbp3	ENSMUSG00000027882.18	ENSMUST00000124903.1	protein_coding	chr3:108794872-108797784
chr3	108940455	108940500	+	GC_rich	Low_complexity	Low_complexity	chr3	108940499	108940501	+	ENSMUST00000106586.6,ENSMUSG00000045662.16	Henmt1	ENSMUSG00000045662.16	ENSMUST00000106586.6	protein_coding	chr3:108940500-108960774
chr3	109055625	109055683	-	HAL1ME	LINE	L1	chr3	109055633	109055635	+	ENSMUST00000200208.1,ENSMUSG00000105371.1	Gm44384	ENSMUSG00000105371.1	ENSMUST00000200208.1	miRNA	chr3:109055634-109055747
chr3	109863745	109863780	+	L1Md_F2	LINE	L1	chr3	109863779	109863781	+	ENSMUST00000083938.1,ENSMUSG00000065872.1	Gm25681	ENSMUSG00000065872.1	ENSMUST00000083938.1	snRNA	chr3:109863780-109863885
chr3	109863780	109863885	+	U6	snRNA	snRNA	chr3	109863779	109863781	+	ENSMUST00000083938.1,ENSMUSG00000065872.1	Gm25681	ENSMUSG00000065872.1	ENSMUST00000083938.1	snRNA	chr3:109863780-109863885
chr3	110564436	110564541	-	U6	snRNA	snRNA	chr3	110564540	110564542	-	ENSMUST00000104065.1,ENSMUSG00000077253.1	Gm26076	ENSMUSG00000077253.1	ENSMUST00000104065.1	snRNA	chr3:110564437-110564541
chr3	111789268	111789626	-	Lx9	LINE	L1	chr3	111789491	111789493	+	ENSMUST00000196237.1,ENSMUSG00000105882.1	Gm42905	ENSMUSG00000105882.1	ENSMUST00000196237.1	TEC	chr3:111789492-111791102
chr3	112200623	112204344	-	L1_Mur2	LINE	L1	chr3	112203014	112203016	-	ENSMUST00000197162.1,ENSMUSG00000105507.1	Gm43853	ENSMUSG00000105507.1	ENSMUST00000197162.1	processed_pseudogene	chr3:112202715-112203015
chr3	112586744	112591570	-	L1Md_F2	LINE	L1	chr3	112591562	112591564	+	ENSMUST00000198956.1,ENSMUSG00000105785.1	Gm42526	ENSMUSG00000105785.1	ENSMUST00000198956.1	processed_pseudogene	chr3:112591563-112591955
chr3	112767004	112767329	+	RLTR45	LTR	ERVK	chr3	112767011	112767013	-	ENSMUST00000199590.1,ENSMUSG00000106666.1	Gm43587	ENSMUSG00000106666.1	ENSMUST00000199590.1	processed_pseudogene	chr3:112766809-112767012
chr3	113606519	113606889	+	MTE2a	LTR	ERVL-MaLR	chr3	113606698	113606700	-	ENSMUST00000174147.1,ENSMUSG00000074264.12	Amy1	ENSMUSG00000074264.12	ENSMUST00000174147.1	protein_coding	chr3:113564987-113606699
chr3	113854714	113854845	+	MurSatRep1	Unknown	Unknown	chr3	113854735	113854737	+	ENSMUST00000197877.1,ENSMUSG00000106084.1	Gm18163	ENSMUSG00000106084.1	ENSMUST00000197877.1	processed_pseudogene	chr3:113854736-113856378
chr3	114060306	114060536	+	L1Md_F2	LINE	L1	chr3	114060441	114060443	+	ENSMUST00000196654.1,ENSMUSG00000027966.20	Col11a1	ENSMUSG00000027966.20	ENSMUST00000196654.1	protein_coding	chr3:114060442-114061410
chr3	115483902	115484336	-	MT2_Mm	LTR	ERVL	chr3	115484135	115484137	-	ENSMUST00000117026.1,ENSMUSG00000080676.1	Gm25347	ENSMUSG00000080676.1	ENSMUST00000117026.1	miRNA	chr3:115484016-115484136
chr3	115909516	115910799	+	IAPEz-int	LTR	ERVK	chr3	115910369	115910371	+	ENSMUST00000199075.1,ENSMUSG00000105108.1	Gm42687	ENSMUSG00000105108.1	ENSMUST00000199075.1	TEC	chr3:115910370-115910533
chr3	115910798	115914051	+	IAPEz-int	LTR	ERVK	chr3	115913889	115913891	+	ENSMUST00000200525.1,ENSMUSG00000104803.1	Gm43108	ENSMUSG00000104803.1	ENSMUST00000200525.1	TEC	chr3:115913890-115914182
chr3	115914051	115914440	+	IAPLTR1_Mm	LTR	ERVK	chr3	115914062	115914064	-	ENSMUST00000198729.1,ENSMUSG00000105017.1	Gm43107	ENSMUSG00000105017.1	ENSMUST00000198729.1	TEC	chr3:115913809-115914063
chr3	116120715	116120745	+	(A)n	Simple_repeat	Simple_repeat	chr3	116120714	116120716	-	ENSMUST00000197031.1,ENSMUSG00000027962.14	Vcam1	ENSMUSG00000027962.14	ENSMUST00000197031.1	protein_coding	chr3:116116628-116120715
chr3	116424010	116424040	+	(TCC)n	Simple_repeat	Simple_repeat	chr3	116424031	116424033	-	ENSMUST00000090464.6,ENSMUSG00000033502.14	Cdc14a	ENSMUSG00000033502.14	ENSMUST00000090464.6	protein_coding	chr3:116272553-116424032
chr3	116424010	116424040	+	(TCC)n	Simple_repeat	Simple_repeat	chr3	116424031	116424033	-	ENSMUST00000127704.7,ENSMUSG00000033502.14	Cdc14a	ENSMUSG00000033502.14	ENSMUST00000127704.7	protein_coding	chr3:116326039-116424032
chr3	116531977	116532176	-	L1M4	LINE	L1	chr3	116532148	116532150	+	ENSMUST00000199796.1,ENSMUSG00000105992.1	Gm43651	ENSMUSG00000105992.1	ENSMUST00000199796.1	TEC	chr3:116532149-116532587
chr3	116574374	116574523	+	B1_Mus1	SINE	Alu	chr3	116574423	116574425	-	ENSMUST00000200361.1,ENSMUSG00000106025.1	Gm42940	ENSMUSG00000106025.1	ENSMUST00000200361.1	TEC	chr3:116572063-116574424
chr3	116663441	116663837	+	MLT1F1	LTR	ERVL-MaLR	chr3	116663731	116663733	+	ENSMUST00000197000.1,ENSMUSG00000106125.1	4930512P04Rik	ENSMUSG00000106125.1	ENSMUST00000197000.1	lincRNA	chr3:116663732-116664155
chr3	116818019	116819268	+	IAPEz-int	LTR	ERVK	chr3	116818814	116818816	+	ENSMUST00000197996.1,ENSMUSG00000106128.1	Gm43520	ENSMUSG00000106128.1	ENSMUST00000197996.1	TEC	chr3:116818815-116818978
chr3	116822536	116823017	+	IAPLTR1_Mm	LTR	ERVK	chr3	116822547	116822549	-	ENSMUST00000197838.1,ENSMUSG00000106511.1	Gm43521	ENSMUSG00000106511.1	ENSMUST00000197838.1	TEC	chr3:116822294-116822548
chr3	117077580	117077950	+	MTEb	LTR	ERVL-MaLR	chr3	117077764	117077766	-	ENSMUST00000029642.7,ENSMUSG00000028009.7	1700061I17Rik	ENSMUSG00000028009.7	ENSMUST00000029642.7	lincRNA	chr3:117060522-117077765
chr3	117101501	117101836	+	Lx5	LINE	L1	chr3	117101513	117101515	-	ENSMUST00000197534.1,ENSMUSG00000106343.1	Gm18430	ENSMUSG00000106343.1	ENSMUST00000197534.1	processed_pseudogene	chr3:117100833-117101514
chr3	117253775	117255619	+	MERVK26-int	LTR	ERVK	chr3	117255131	117255133	+	ENSMUST00000199340.1,ENSMUSG00000106342.1	Gm42891	ENSMUSG00000106342.1	ENSMUST00000199340.1	lincRNA	chr3:117255132-117255820
chr3	117848549	117848663	+	RLTR17B_Mm	LTR	ERVK	chr3	117848651	117848653	-	ENSMUST00000175313.1,ENSMUSG00000093054.1	Gm24811	ENSMUSG00000093054.1	ENSMUST00000175313.1	miRNA	chr3:117848553-117848652
chr3	118433768	118433840	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	118433796	118433798	+	ENSMUST00000180593.1,ENSMUSG00000097311.7	Gm26871	ENSMUSG00000097311.7	ENSMUST00000180593.1	processed_transcript	chr3:118433797-118514627
chr3	119707237	119711590	+	Lx5	LINE	L1	chr3	119709515	119709517	+	ENSMUST00000196114.1,ENSMUSG00000106037.1	Gm4332	ENSMUSG00000106037.1	ENSMUST00000196114.1	processed_pseudogene	chr3:119709516-119709861
chr3	119726136	119726168	+	(CAG)n	Simple_repeat	Simple_repeat	chr3	119726139	119726141	-	ENSMUST00000197387.4,ENSMUSG00000028134.11	Ptbp2	ENSMUSG00000028134.11	ENSMUST00000197387.4	protein_coding	chr3:119720345-119726140
chr3	119757032	119757356	-	L1ME2	LINE	L1	chr3	119757337	119757339	+	ENSMUST00000199701.1,ENSMUSG00000106075.1	Gm42804	ENSMUSG00000106075.1	ENSMUST00000199701.1	processed_pseudogene	chr3:119757338-119757515
chr3	119831736	119832170	+	MT2_Mm	LTR	ERVL	chr3	119831936	119831938	+	ENSMUST00000116833.1,ENSMUSG00000094593.1	Gm24744	ENSMUSG00000094593.1	ENSMUST00000116833.1	miRNA	chr3:119831937-119832057
chr3	119837650	119838137	+	MT2_Mm	LTR	ERVL	chr3	119837903	119837905	+	ENSMUST00000116701.1,ENSMUSG00000096196.1	Gm26137	ENSMUSG00000096196.1	ENSMUST00000116701.1	miRNA	chr3:119837904-119838024
chr3	120317883	120317989	-	U6	snRNA	snRNA	chr3	120317988	120317990	-	ENSMUST00000083750.1,ENSMUSG00000065684.1	Gm23733	ENSMUSG00000065684.1	ENSMUST00000083750.1	snRNA	chr3:120317884-120317989
chr3	120735038	120742501	-	L1Md_T	LINE	L1	chr3	120739560	120739562	-	ENSMUST00000200624.1,ENSMUSG00000105207.1	Gm42927	ENSMUSG00000105207.1	ENSMUST00000200624.1	processed_pseudogene	chr3:120735721-120739561
chr3	121231500	121231579	+	ID4_	SINE	ID	chr3	121231532	121231534	-	ENSMUST00000200402.1,ENSMUSG00000028132.15	Tmem56	ENSMUSG00000028132.15	ENSMUST00000200402.1	protein_coding	chr3:121228378-121231533
chr3	121252604	121253204	-	MT2B2	LTR	ERVL	chr3	121252862	121252864	-	ENSMUST00000155309.7,ENSMUSG00000028132.15	Tmem56	ENSMUSG00000028132.15	ENSMUST00000155309.7	protein_coding	chr3:121206038-121252863
chr3	121337691	121337917	+	7SK	RNA	RNA	chr3	121337691	121337693	+	ENSMUST00000122725.1,ENSMUSG00000084674.1	Gm26027	ENSMUSG00000084674.1	ENSMUST00000122725.1	misc_RNA	chr3:121337692-121337959
chr3	121450975	121451186	+	ID_B1	SINE	B4	chr3	121451004	121451006	+	ENSMUST00000196671.1,ENSMUSG00000053931.11	Cnn3	ENSMUSG00000053931.11	ENSMUST00000196671.1	protein_coding	chr3:121451005-121457354
chr3	121671089	121671441	+	MTEa	LTR	ERVL-MaLR	chr3	121671316	121671318	+	ENSMUST00000098646.3,ENSMUSG00000074248.7	4930432M17Rik	ENSMUSG00000074248.7	ENSMUST00000098646.3	protein_coding	chr3:121671317-121682835
chr3	121710200	121710329	-	LTR33A	LTR	ERVL	chr3	121710245	121710247	-	ENSMUST00000197703.1,ENSMUSG00000106036.1	Gm43608	ENSMUSG00000106036.1	ENSMUST00000197703.1	lincRNA	chr3:121701501-121710246
chr3	121815293	121815320	+	GC_rich	Low_complexity	Low_complexity	chr3	121815301	121815303	-	ENSMUST00000029770.7,ENSMUSG00000028127.10	Abcd3	ENSMUSG00000028127.10	ENSMUST00000029770.7	protein_coding	chr3:121758907-121815302
chr3	121953176	121953288	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	121953228	121953230	+	ENSMUST00000037958.13,ENSMUSG00000039831.16	Arhgap29	ENSMUSG00000039831.16	ENSMUST00000037958.13	protein_coding	chr3:121953229-122016753
chr3	121953176	121953288	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	121953229	121953231	+	ENSMUST00000196904.4,ENSMUSG00000039831.16	Arhgap29	ENSMUSG00000039831.16	ENSMUST00000196904.4	protein_coding	chr3:121953230-121988916
chr3	121981468	121981582	-	ID_B1	SINE	B4	chr3	121981549	121981551	+	ENSMUST00000199081.1,ENSMUSG00000039831.16	Arhgap29	ENSMUSG00000039831.16	ENSMUST00000199081.1	protein_coding	chr3:121981550-121992892
chr3	122131940	122132049	+	PB1D7	SINE	Alu	chr3	122132001	122132003	+	ENSMUST00000141135.4,ENSMUSG00000028125.14	Abca4	ENSMUSG00000028125.14	ENSMUST00000141135.4	protein_coding	chr3:122132002-122180061
chr3	122173005	122173080	-	ORR1F	LTR	ERVL-MaLR	chr3	122173009	122173011	+	ENSMUST00000136358.2,ENSMUSG00000028125.14	Abca4	ENSMUSG00000028125.14	ENSMUST00000136358.2	protein_coding	chr3:122173010-122180123
chr3	122185000	122185038	+	(G)n	Simple_repeat	Simple_repeat	chr3	122185003	122185005	-	ENSMUST00000198695.1,ENSMUSG00000104799.1	Gm9361	ENSMUSG00000104799.1	ENSMUST00000198695.1	processed_pseudogene	chr3:122183498-122185004
chr3	122232513	122232703	-	MTA_Mm	LTR	ERVL-MaLR	chr3	122232635	122232637	-	ENSMUST00000175193.1,ENSMUSG00000092934.1	Gm22903	ENSMUSG00000092934.1	ENSMUST00000175193.1	miRNA	chr3:122232535-122232636
chr3	122245508	122245610	+	GC_rich	Low_complexity	Low_complexity	chr3	122245556	122245558	+	ENSMUST00000029769.13,ENSMUSG00000028124.15	Gclm	ENSMUSG00000028124.15	ENSMUST00000029769.13	protein_coding	chr3:122245557-122270732
chr3	122245689	122245743	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	122245711	122245713	+	ENSMUST00000137540.1,ENSMUSG00000028124.15	Gclm	ENSMUSG00000028124.15	ENSMUST00000137540.1	protein_coding	chr3:122245712-122256971
chr3	122280490	122280672	-	RMER17C	LTR	ERVK	chr3	122280576	122280578	+	ENSMUST00000196338.1,ENSMUSG00000039756.12	Dnttip2	ENSMUSG00000039756.12	ENSMUST00000196338.1	protein_coding	chr3:122280577-122285098
chr3	122293963	122294151	-	MamRep1879	DNA	hAT-Tip100?	chr3	122294135	122294137	+	ENSMUST00000196134.1,ENSMUSG00000028121.8	Bcar3	ENSMUSG00000028121.8	ENSMUST00000196134.1	protein_coding	chr3:122294136-122427148
chr3	122459036	122459067	+	(A)n	Simple_repeat	Simple_repeat	chr3	122459059	122459061	-	ENSMUST00000197198.1,ENSMUSG00000104574.1	Gm42836	ENSMUSG00000104574.1	ENSMUST00000197198.1	antisense	chr3:122426443-122459060
chr3	122464522	122464727	+	B4A	SINE	B4	chr3	122464726	122464728	+	ENSMUST00000157118.1,ENSMUSG00000087743.1	Gm25153	ENSMUSG00000087743.1	ENSMUST00000157118.1	snRNA	chr3:122464727-122464882
chr3	122464727	122464879	+	U1	snRNA	snRNA	chr3	122464726	122464728	+	ENSMUST00000157118.1,ENSMUSG00000087743.1	Gm25153	ENSMUSG00000087743.1	ENSMUST00000157118.1	snRNA	chr3:122464727-122464882
chr3	122575621	122579442	+	Lx8b	LINE	L1	chr3	122577071	122577073	-	ENSMUST00000195964.1,ENSMUSG00000106364.1	Gm42994	ENSMUSG00000106364.1	ENSMUST00000195964.1	TEC	chr3:122574524-122577072
chr3	122630073	122630220	-	MLT-int	LTR	ERVL-MaLR	chr3	122630167	122630169	-	ENSMUST00000199116.1,ENSMUSG00000106365.1	Gm43568	ENSMUSG00000106365.1	ENSMUST00000199116.1	lincRNA	chr3:122622255-122630168
chr3	122895040	122895136	-	B1_Mus1	SINE	Alu	chr3	122895071	122895073	+	ENSMUST00000023820.5,ENSMUSG00000023057.5	Fabp2	ENSMUSG00000023057.5	ENSMUST00000023820.5	protein_coding	chr3:122895072-122899506
chr3	122961447	122961476	+	(A)n	Simple_repeat	Simple_repeat	chr3	122961448	122961450	-	ENSMUST00000197801.1,ENSMUSG00000039701.11	Usp53	ENSMUSG00000039701.11	ENSMUST00000197801.1	protein_coding	chr3:122959046-122961449
chr3	122995403	122995426	+	(T)n	Simple_repeat	Simple_repeat	chr3	122995410	122995412	+	ENSMUST00000196563.1,ENSMUSG00000105478.1	Gm43285	ENSMUSG00000105478.1	ENSMUST00000196563.1	TEC	chr3:122995411-122999002
chr3	123015072	123015574	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr3	123015367	123015369	-	ENSMUST00000103761.1,ENSMUSG00000076949.1	Gm22066	ENSMUSG00000076949.1	ENSMUST00000103761.1	miRNA	chr3:123015259-123015368
chr3	123043724	123043813	-	RLTR20A4	LTR	ERVK	chr3	123043734	123043736	-	ENSMUST00000197420.1,ENSMUSG00000106114.1	Gm43286	ENSMUSG00000106114.1	ENSMUST00000197420.1	processed_pseudogene	chr3:123043312-123043735
chr3	123211872	123212655	-	RMER17A	LTR	ERVK	chr3	123211946	123211948	-	ENSMUST00000199138.1,ENSMUSG00000106490.1	Gm43283	ENSMUSG00000106490.1	ENSMUST00000199138.1	TEC	chr3:123209400-123211947
chr3	123267400	123267469	+	GC_rich	Low_complexity	Low_complexity	chr3	123267454	123267456	+	ENSMUST00000047923.11,ENSMUSG00000039234.11	Sec24d	ENSMUSG00000039234.11	ENSMUST00000047923.11	protein_coding	chr3:123267455-123365641
chr3	123471761	123472114	-	IAPLTR1_Mm	LTR	ERVK	chr3	123471969	123471971	+	ENSMUST00000195987.1,ENSMUSG00000105058.1	Gm43590	ENSMUSG00000105058.1	ENSMUST00000195987.1	TEC	chr3:123471970-123472356
chr3	123687843	123688058	+	B3	SINE	B2	chr3	123687971	123687973	-	ENSMUST00000196470.1,ENSMUSG00000104860.1	Gm42510	ENSMUSG00000104860.1	ENSMUST00000196470.1	TEC	chr3:123685715-123687972
chr3	123743296	123743403	-	U6	snRNA	snRNA	chr3	123743402	123743404	-	ENSMUST00000083198.1,ENSMUSG00000065132.1	Gm24456	ENSMUSG00000065132.1	ENSMUST00000083198.1	snRNA	chr3:123743297-123743403
chr3	123985092	123985136	+	(CA)n	Simple_repeat	Simple_repeat	chr3	123985103	123985105	-	ENSMUST00000118055.2,ENSMUSG00000081939.2	Gm15399	ENSMUSG00000081939.2	ENSMUST00000118055.2	processed_pseudogene	chr3:123984097-123985104
chr3	124245945	124246281	-	IAPLTR4	LTR	ERVK	chr3	124246236	124246238	+	ENSMUST00000196150.1,ENSMUSG00000104531.1	Gm43731	ENSMUSG00000104531.1	ENSMUST00000196150.1	lincRNA	chr3:124246237-124318984
chr3	124399751	124399826	+	(TG)n	Simple_repeat	Simple_repeat	chr3	124399757	124399759	-	ENSMUST00000196005.2,ENSMUSG00000106150.2	4921527H02Rik	ENSMUSG00000106150.2	ENSMUST00000196005.2	TEC	chr3:124398086-124399758
chr3	124410655	124410764	+	U6	snRNA	snRNA	chr3	124410654	124410656	+	ENSMUST00000082981.1,ENSMUSG00000064915.1	Gm22575	ENSMUSG00000064915.1	ENSMUST00000082981.1	snRNA	chr3:124410655-124410764
chr3	124848549	124848801	+	7SK	RNA	RNA	chr3	124848588	124848590	+	ENSMUST00000157474.1,ENSMUSG00000088099.1	Gm23673	ENSMUSG00000088099.1	ENSMUST00000157474.1	misc_RNA	chr3:124848589-124848886
chr3	125219420	125219927	-	ORR1D-int	LTR	ERVL-MaLR	chr3	125219552	125219554	-	ENSMUST00000197548.1,ENSMUSG00000106001.1	Gm42826	ENSMUSG00000106001.1	ENSMUST00000197548.1	TEC	chr3:125216915-125219553
chr3	125404045	125404078	+	(GGGA)n	Simple_repeat	Simple_repeat	chr3	125404075	125404077	+	ENSMUST00000173932.7,ENSMUSG00000027971.16	Ndst4	ENSMUSG00000027971.16	ENSMUST00000173932.7	protein_coding	chr3:125404076-125728899
chr3	125680755	125681270	+	RMER2	LTR	ERV1	chr3	125680986	125680988	+	ENSMUST00000174648.5,ENSMUSG00000027971.16	Ndst4	ENSMUSG00000027971.16	ENSMUST00000174648.5	protein_coding	chr3:125680987-125728339
chr3	125680755	125681270	+	RMER2	LTR	ERV1	chr3	125680996	125680998	+	ENSMUST00000172632.1,ENSMUSG00000027971.16	Ndst4	ENSMUSG00000027971.16	ENSMUST00000172632.1	protein_coding	chr3:125680997-125690938
chr3	126226249	126226446	-	MTD	LTR	ERVL-MaLR	chr3	126226326	126226328	+	ENSMUST00000197058.1,ENSMUSG00000106503.1	Gm42827	ENSMUSG00000106503.1	ENSMUST00000197058.1	lincRNA	chr3:126226327-126228357
chr3	126657598	126657788	+	G-rich	Low_complexity	Low_complexity	chr3	126657721	126657723	+	ENSMUST00000197702.1,ENSMUSG00000105774.1	Gm43006	ENSMUSG00000105774.1	ENSMUST00000197702.1	TEC	chr3:126657722-126659323
chr3	126737466	126737596	-	L2c	LINE	L2	chr3	126737496	126737498	+	ENSMUST00000199936.1,ENSMUSG00000105378.1	Gm42515	ENSMUSG00000105378.1	ENSMUST00000199936.1	TEC	chr3:126737497-126741079
chr3	126804288	126804597	+	L1_Mus4	LINE	L1	chr3	126804525	126804527	+	ENSMUST00000200010.1,ENSMUSG00000053819.16	Camk2d	ENSMUSG00000053819.16	ENSMUST00000200010.1	protein_coding	chr3:126804526-126806894
chr3	127140451	127140497	+	(A)n	Simple_repeat	Simple_repeat	chr3	127140489	127140491	-	ENSMUST00000199556.1,ENSMUSG00000104963.1	Gm42974	ENSMUSG00000104963.1	ENSMUST00000199556.1	TEC	chr3:127137837-127140490
chr3	127183876	127183973	+	(GAAA)n	Simple_repeat	Simple_repeat	chr3	127183972	127183974	-	ENSMUST00000197856.1,ENSMUSG00000105202.1	C230031I18Rik	ENSMUSG00000105202.1	ENSMUST00000197856.1	TEC	chr3:127180276-127183973
chr3	127272248	127272345	-	ID_B1	SINE	B4	chr3	127272288	127272290	-	ENSMUST00000196937.1,ENSMUSG00000105445.1	Gm42972	ENSMUSG00000105445.1	ENSMUST00000196937.1	TEC	chr3:127266673-127272289
chr3	127285499	127286139	-	L1_Mus1	LINE	L1	chr3	127285558	127285560	-	ENSMUST00000199228.1,ENSMUSG00000105568.1	Gm42971	ENSMUSG00000105568.1	ENSMUST00000199228.1	TEC	chr3:127283481-127285559
chr3	127299632	127299695	+	BC1_Mm	scRNA	scRNA	chr3	127299672	127299674	-	ENSMUST00000196407.1,ENSMUSG00000106446.1	Gm42970	ENSMUSG00000106446.1	ENSMUST00000196407.1	TEC	chr3:127298322-127299673
chr3	127481171	127481245	+	(CAG)n	Simple_repeat	Simple_repeat	chr3	127481189	127481191	-	ENSMUST00000196257.1,ENSMUSG00000105969.1	Gm42525	ENSMUSG00000105969.1	ENSMUST00000196257.1	transcribed_processed_pseudogene	chr3:127480179-127481190
chr3	127512850	127512914	+	(AGGGGG)n	Simple_repeat	Simple_repeat	chr3	127512899	127512901	+	ENSMUST00000196862.1,ENSMUSG00000104957.1	Gm43354	ENSMUSG00000104957.1	ENSMUST00000196862.1	processed_pseudogene	chr3:127512900-127513245
chr3	127557540	127557728	-	B2_Mm2	SINE	B2	chr3	127557560	127557562	-	ENSMUST00000196949.1,ENSMUSG00000105104.1	Gm43729	ENSMUSG00000105104.1	ENSMUST00000196949.1	antisense	chr3:127556228-127557561
chr3	127594171	127594274	-	B3	SINE	B2	chr3	127594229	127594231	+	ENSMUST00000197108.1,ENSMUSG00000051278.12	Zgrf1	ENSMUSG00000051278.12	ENSMUST00000197108.1	protein_coding	chr3:127594230-127601016
chr3	127716933	127717386	+	RMER17C2	LTR	ERVK	chr3	127717026	127717028	-	ENSMUST00000199867.1,ENSMUSG00000104888.1	1500005C15Rik	ENSMUSG00000104888.1	ENSMUST00000199867.1	TEC	chr3:127714634-127717027
chr3	127808823	127808972	+	B1_Mus2	SINE	Alu	chr3	127808863	127808865	-	ENSMUST00000198626.1,ENSMUSG00000074238.6	Ap1ar	ENSMUSG00000074238.6	ENSMUST00000198626.1	protein_coding	chr3:127807267-127808864
chr3	127832947	127832980	+	(CAAA)n	Simple_repeat	Simple_repeat	chr3	127832970	127832972	-	ENSMUST00000200664.1,ENSMUSG00000105804.1	Gm43654	ENSMUSG00000105804.1	ENSMUST00000200664.1	TEC	chr3:127829555-127832971
chr3	127916027	127916380	+	ORR1A1	LTR	ERVL-MaLR	chr3	127916171	127916173	+	ENSMUST00000198240.1,ENSMUSG00000104763.1	9830132P13Rik	ENSMUSG00000104763.1	ENSMUST00000198240.1	lincRNA	chr3:127916172-127955220
chr3	127970587	127970770	+	(TTC)n	Simple_repeat	Simple_repeat	chr3	127970708	127970710	+	ENSMUST00000199122.1,ENSMUSG00000106437.1	Gm35667	ENSMUSG00000106437.1	ENSMUST00000199122.1	lincRNA	chr3:127970709-127972881
chr3	128701163	128701672	+	L1MC	LINE	L1	chr3	128701549	128701551	-	ENSMUST00000200511.1,ENSMUSG00000105527.1	4933424H11Rik	ENSMUSG00000105527.1	ENSMUST00000200511.1	lincRNA	chr3:128699533-128701550
chr3	129199891	129199961	+	G-rich	Low_complexity	Low_complexity	chr3	129199921	129199923	+	ENSMUST00000029657.15,ENSMUSG00000028023.16	Pitx2	ENSMUSG00000028023.16	ENSMUST00000029657.15	protein_coding	chr3:129199922-129219578
chr3	129199891	129199961	+	G-rich	Low_complexity	Low_complexity	chr3	129199925	129199927	+	ENSMUST00000106382.10,ENSMUSG00000028023.16	Pitx2	ENSMUSG00000028023.16	ENSMUST00000106382.10	protein_coding	chr3:129199926-129219591
chr3	129681377	129681561	-	B3	SINE	B2	chr3	129681545	129681547	-	ENSMUST00000197250.1,ENSMUSG00000028017.7	Egf	ENSMUSG00000028017.7	ENSMUST00000197250.1	protein_coding	chr3:129678337-129681546
chr3	129683808	129684241	+	(TATTG)n	Simple_repeat	Simple_repeat	chr3	129684240	129684242	-	ENSMUST00000174960.1,ENSMUSG00000092701.1	Gm24515	ENSMUSG00000092701.1	ENSMUST00000174960.1	miRNA	chr3:129684133-129684241
chr3	129684241	129684320	-	B4A	SINE	B4	chr3	129684240	129684242	-	ENSMUST00000174960.1,ENSMUSG00000092701.1	Gm24515	ENSMUSG00000092701.1	ENSMUST00000174960.1	miRNA	chr3:129684133-129684241
chr3	129695254	129695331	+	(GAAA)n	Simple_repeat	Simple_repeat	chr3	129695276	129695278	-	ENSMUST00000199272.1,ENSMUSG00000028017.7	Egf	ENSMUSG00000028017.7	ENSMUST00000199272.1	protein_coding	chr3:129692364-129695277
chr3	129892463	129893111	-	RMER15-int	LTR	ERVL	chr3	129892829	129892831	+	ENSMUST00000196736.1,ENSMUSG00000027999.15	Pla2g12a	ENSMUSG00000027999.15	ENSMUST00000196736.1	protein_coding	chr3:129892830-129895821
chr3	130030632	130031117	-	MLTR11B	LTR	ERVK	chr3	130030866	130030868	-	ENSMUST00000168908.1,ENSMUSG00000001052.15	Sec24b	ENSMUSG00000001052.15	ENSMUST00000168908.1	protein_coding	chr3:130009785-130030867
chr3	130040794	130040845	+	(CTG)n	Simple_repeat	Simple_repeat	chr3	130040832	130040834	-	ENSMUST00000165889.7,ENSMUSG00000001052.15	Sec24b	ENSMUSG00000001052.15	ENSMUST00000165889.7	protein_coding	chr3:130007385-130040833
chr3	130205464	130205571	+	U6	snRNA	snRNA	chr3	130205464	130205466	+	ENSMUST00000083854.1,ENSMUSG00000065788.1	Gm22682	ENSMUSG00000065788.1	ENSMUST00000083854.1	snRNA	chr3:130205465-130205571
chr3	130538861	130540077	-	L1_Mur3	LINE	L1	chr3	130539488	130539490	+	ENSMUST00000196743.1,ENSMUSG00000105011.1	Gm43210	ENSMUSG00000105011.1	ENSMUST00000196743.1	TEC	chr3:130539489-130545640
chr3	130592083	130592172	+	RMER17C2	LTR	ERVK	chr3	130592120	130592122	+	ENSMUST00000197071.1,ENSMUSG00000105520.1	Gm42837	ENSMUSG00000105520.1	ENSMUST00000197071.1	TEC	chr3:130592121-130594949
chr3	130727148	130727452	+	MTD	LTR	ERVL-MaLR	chr3	130727405	130727407	-	ENSMUST00000199001.1,ENSMUSG00000062006.12	Rpl34	ENSMUSG00000062006.12	ENSMUST00000199001.1	protein_coding	chr3:130726834-130727406
chr3	130884842	130885021	-	MER105	DNA	DNA	chr3	130884850	130884852	+	ENSMUST00000196382.1,ENSMUSG00000105628.1	Gm43350	ENSMUSG00000105628.1	ENSMUST00000196382.1	TEC	chr3:130884851-130885561
chr3	131759176	131759843	+	MTD-int	LTR	ERVL-MaLR	chr3	131759804	131759806	+	ENSMUST00000197726.1,ENSMUSG00000105331.1	Gm29865	ENSMUSG00000105331.1	ENSMUST00000197726.1	lincRNA	chr3:131759805-132030743
chr3	131918255	131918352	+	U6	snRNA	snRNA	chr3	131918258	131918260	+	ENSMUST00000157252.1,ENSMUSG00000087877.1	Gm26103	ENSMUSG00000087877.1	ENSMUST00000157252.1	snRNA	chr3:131918259-131918353
chr3	132082287	132082392	-	U6	snRNA	snRNA	chr3	132082391	132082393	-	ENSMUST00000083058.1,ENSMUSG00000064992.1	Gm22421	ENSMUSG00000064992.1	ENSMUST00000083058.1	snRNA	chr3:132082286-132082392
chr3	132767357	132767447	-	L1MCa	LINE	L1	chr3	132767406	132767408	+	ENSMUST00000200026.1,ENSMUSG00000105719.1	Gm42872	ENSMUSG00000105719.1	ENSMUST00000200026.1	TEC	chr3:132767407-132769373
chr3	132806152	132806296	-	RSINE1	SINE	B4	chr3	132806252	132806254	+	ENSMUST00000196989.1,ENSMUSG00000105691.1	Gm42876	ENSMUSG00000105691.1	ENSMUST00000196989.1	TEC	chr3:132806253-132809467
chr3	132950225	132950369	+	GC_rich	Low_complexity	Low_complexity	chr3	132950290	132950292	-	ENSMUST00000042744.15,ENSMUSG00000040998.18	Npnt	ENSMUSG00000040998.18	ENSMUST00000042744.15	protein_coding	chr3:132881745-132950291
chr3	132950225	132950369	+	GC_rich	Low_complexity	Low_complexity	chr3	132950290	132950292	-	ENSMUST00000117811.7,ENSMUSG00000040998.18	Npnt	ENSMUSG00000040998.18	ENSMUST00000117811.7	protein_coding	chr3:132881745-132950291
chr3	133054249	133054645	+	L1_Mur3	LINE	L1	chr3	133054269	133054271	-	ENSMUST00000196110.1,ENSMUSG00000105217.1	Gm42873	ENSMUSG00000105217.1	ENSMUST00000196110.1	TEC	chr3:133052545-133054270
chr3	133082787	133084053	+	ORR1D1-int	LTR	ERVL-MaLR	chr3	133083127	133083129	-	ENSMUST00000197381.1,ENSMUSG00000028018.15	Gstcd	ENSMUSG00000028018.15	ENSMUST00000197381.1	protein_coding	chr3:133081425-133083128
chr3	133091352	133091767	+	L1M4b	LINE	L1	chr3	133091746	133091748	-	ENSMUST00000161577.7,ENSMUSG00000028018.15	Gstcd	ENSMUSG00000028018.15	ENSMUST00000161577.7	protein_coding	chr3:132998831-133091747
chr3	133100375	133100402	+	AT_rich	Low_complexity	Low_complexity	chr3	133100386	133100388	+	ENSMUST00000160669.1,ENSMUSG00000028016.9	Ints12	ENSMUSG00000028016.9	ENSMUST00000160669.1	protein_coding	chr3:133100387-133107085
chr3	133372253	133372455	+	URR1B	DNA	hAT-Charlie	chr3	133372413	133372415	+	ENSMUST00000196807.1,ENSMUSG00000028013.16	Ppa2	ENSMUSG00000028013.16	ENSMUST00000196807.1	protein_coding	chr3:133372414-133374447
chr3	133431589	133432076	-	MT2_Mm	LTR	ERVL	chr3	133431822	133431824	-	ENSMUST00000116856.1,ENSMUSG00000080506.1	Gm25042	ENSMUSG00000080506.1	ENSMUST00000116856.1	miRNA	chr3:133431703-133431823
chr3	133474739	133474864	+	B1_Mus1	SINE	Alu	chr3	133474818	133474820	-	ENSMUST00000199381.1,ENSMUSG00000040943.12	Tet2	ENSMUSG00000040943.12	ENSMUST00000199381.1	protein_coding	chr3:133463683-133474819
chr3	133480515	133480696	+	A-rich	Low_complexity	Low_complexity	chr3	133480681	133480683	-	ENSMUST00000200203.1,ENSMUSG00000040943.12	Tet2	ENSMUSG00000040943.12	ENSMUST00000200203.1	protein_coding	chr3:133479056-133480682
chr3	133634701	133634808	-	PB1D10	SINE	Alu	chr3	133634757	133634759	-	ENSMUST00000193574.1,ENSMUSG00000102530.1	Gm37228	ENSMUSG00000102530.1	ENSMUST00000193574.1	TEC	chr3:133623684-133634758
chr3	133663011	133663585	-	RLTR12G	LTR	ERVK	chr3	133663390	133663392	-	ENSMUST00000197904.1,ENSMUSG00000105952.1	Gm40153	ENSMUSG00000105952.1	ENSMUST00000197904.1	lincRNA	chr3:133645808-133663391
chr3	134160318	134160369	+	(TTTC)n	Simple_repeat	Simple_repeat	chr3	134160364	134160366	+	ENSMUST00000198002.1,ENSMUSG00000104556.1	Gm43192	ENSMUSG00000104556.1	ENSMUST00000198002.1	lincRNA	chr3:134160365-134191976
chr3	134357291	134357612	+	RLTRETN_Mm	LTR	ERVK	chr3	134357291	134357293	+	ENSMUST00000200155.1,ENSMUSG00000106628.1	Gm43558	ENSMUSG00000106628.1	ENSMUST00000200155.1	TEC	chr3:134357292-134357501
chr3	134423154	134423789	-	Lx8	LINE	L1	chr3	134423634	134423636	-	ENSMUST00000198231.1,ENSMUSG00000105765.1	4930539C22Rik	ENSMUSG00000105765.1	ENSMUST00000198231.1	lincRNA	chr3:134404143-134423635
chr3	135147252	135147435	-	MLT1B	LTR	ERVL-MaLR	chr3	135147407	135147409	+	ENSMUST00000102411.1,ENSMUSG00000076366.1	Gm24048	ENSMUSG00000076366.1	ENSMUST00000102411.1	miRNA	chr3:135147408-135147513
chr3	135372894	135372973	+	(CACCG)n	Simple_repeat	Simple_repeat	chr3	135372921	135372923	+	ENSMUST00000161506.1,ENSMUSG00000050150.16	Slc9b1	ENSMUSG00000050150.16	ENSMUST00000161506.1	protein_coding	chr3:135372922-135374425
chr3	135435813	135436025	-	ID_B1	SINE	B4	chr3	135435887	135435889	-	ENSMUST00000196253.1,ENSMUSG00000105449.1	Gm43379	ENSMUSG00000105449.1	ENSMUST00000196253.1	TEC	chr3:135428163-135435888
chr3	135458608	135458747	-	RSINE1	SINE	B4	chr3	135458647	135458649	+	ENSMUST00000196564.1,ENSMUSG00000078578.9	Ube2d3	ENSMUSG00000078578.9	ENSMUST00000196564.1	protein_coding	chr3:135458648-135460686
chr3	135495606	135495669	-	MER130	Unknown	Unknown	chr3	135495652	135495654	+	ENSMUST00000120489.1,ENSMUSG00000083045.1	Gm16100	ENSMUSG00000083045.1	ENSMUST00000120489.1	processed_pseudogene	chr3:135495653-135495883
chr3	135516864	135517172	-	MLT1F2	LTR	ERVL-MaLR	chr3	135517149	135517151	+	ENSMUST00000123061.1,ENSMUSG00000028164.15	Manba	ENSMUSG00000028164.15	ENSMUST00000123061.1	protein_coding	chr3:135517150-135542327
chr3	135548770	135548932	-	B1F2	SINE	Alu	chr3	135548903	135548905	+	ENSMUST00000147872.7,ENSMUSG00000028164.15	Manba	ENSMUSG00000028164.15	ENSMUST00000147872.7	protein_coding	chr3:135548904-135554769
chr3	135548819	135549021	-	B4A	SINE	B4	chr3	135548903	135548905	+	ENSMUST00000147872.7,ENSMUSG00000028164.15	Manba	ENSMUSG00000028164.15	ENSMUST00000147872.7	protein_coding	chr3:135548904-135554769
chr3	135549887	135550724	-	RMER17D	LTR	ERVK	chr3	135550558	135550560	+	ENSMUST00000130147.7,ENSMUSG00000028164.15	Manba	ENSMUSG00000028164.15	ENSMUST00000130147.7	protein_coding	chr3:135550559-135556761
chr3	135549887	135550724	-	RMER17D	LTR	ERVK	chr3	135550629	135550631	+	ENSMUST00000134478.1,ENSMUSG00000028164.15	Manba	ENSMUSG00000028164.15	ENSMUST00000134478.1	protein_coding	chr3:135550630-135563230
chr3	135669207	135669390	+	B3	SINE	B2	chr3	135669338	135669340	-	ENSMUST00000196469.4,ENSMUSG00000028163.17	Nfkb1	ENSMUSG00000028163.17	ENSMUST00000196469.4	protein_coding	chr3:135585281-135669339
chr3	135871872	135872692	-	RCHARR1	DNA	hAT-Charlie	chr3	135872112	135872114	+	ENSMUST00000200108.1,ENSMUSG00000105681.1	Gm43428	ENSMUSG00000105681.1	ENSMUST00000200108.1	TEC	chr3:135872113-135875957
chr3	135904250	135904425	-	RSINE1	SINE	B4	chr3	135904343	135904345	+	ENSMUST00000197498.1,ENSMUSG00000104710.1	Gm31243	ENSMUSG00000104710.1	ENSMUST00000197498.1	antisense	chr3:135904344-135929001
chr3	136670019	136670150	+	G-rich	Low_complexity	Low_complexity	chr3	136670123	136670125	+	ENSMUST00000124206.1,ENSMUSG00000028161.17	Ppp3ca	ENSMUSG00000028161.17	ENSMUST00000124206.1	protein_coding	chr3:136670124-136797838
chr3	136670019	136670150	+	G-rich	Low_complexity	Low_complexity	chr3	136670123	136670125	+	ENSMUST00000070198.13,ENSMUSG00000028161.17	Ppp3ca	ENSMUSG00000028161.17	ENSMUST00000070198.13	protein_coding	chr3:136670124-136937727
chr3	136759936	136760008	+	(GA)n	Simple_repeat	Simple_repeat	chr3	136759959	136759961	-	ENSMUST00000198822.1,ENSMUSG00000105545.1	4930599N24Rik	ENSMUSG00000105545.1	ENSMUST00000198822.1	TEC	chr3:136758958-136759960
chr3	136798258	136798437	+	MER5A	DNA	hAT-Charlie	chr3	136798377	136798379	-	ENSMUST00000200068.1,ENSMUSG00000106439.1	Gm44327	ENSMUSG00000106439.1	ENSMUST00000200068.1	miRNA	chr3:136798262-136798378
chr3	136880315	136880497	-	B3	SINE	B2	chr3	136880433	136880435	+	ENSMUST00000196170.1,ENSMUSG00000028161.17	Ppp3ca	ENSMUSG00000028161.17	ENSMUST00000196170.1	protein_coding	chr3:136880434-136883080
chr3	136954970	136955789	+	RMER17B	LTR	ERVK	chr3	136955092	136955094	-	ENSMUST00000196582.1,ENSMUSG00000104617.1	Gm43356	ENSMUSG00000104617.1	ENSMUST00000196582.1	lincRNA	chr3:136952790-136955093
chr3	137067891	137067998	+	U6	snRNA	snRNA	chr3	137067891	137067893	+	ENSMUST00000083972.1,ENSMUSG00000065906.1	Gm26107	ENSMUSG00000065906.1	ENSMUST00000083972.1	snRNA	chr3:137067892-137067998
chr3	137552536	137552758	+	L3	LINE	CR1	chr3	137552621	137552623	-	ENSMUST00000198629.4,ENSMUSG00000055138.10	Gm4861	ENSMUSG00000055138.10	ENSMUST00000198629.4	lincRNA	chr3:137550045-137552622
chr3	137621220	137621696	+	MT2_Mm	LTR	ERVL	chr3	137621473	137621475	+	ENSMUST00000116680.1,ENSMUSG00000080330.1	Gm22468	ENSMUSG00000080330.1	ENSMUST00000116680.1	miRNA	chr3:137621474-137621593
chr3	137621220	137621696	+	MT2_Mm	LTR	ERVL	chr3	137621611	137621613	+	ENSMUST00000167564.1,ENSMUSG00000046818.7	Ddit4l	ENSMUSG00000046818.7	ENSMUST00000167564.1	protein_coding	chr3:137621612-137625399
chr3	137668307	137674706	+	L1Md_A	LINE	L1	chr3	137671523	137671525	+	ENSMUST00000166899.2,ENSMUSG00000094856.1	Gm21962	ENSMUSG00000094856.1	ENSMUST00000166899.2	protein_coding	chr3:137671524-137672540
chr3	137715657	137715762	+	U6	snRNA	snRNA	chr3	137715657	137715659	+	ENSMUST00000082526.1,ENSMUSG00000064460.1	Gm25080	ENSMUSG00000064460.1	ENSMUST00000082526.1	snRNA	chr3:137715658-137715764
chr3	137783521	137783715	+	B3	SINE	B2	chr3	137783614	137783616	-	ENSMUST00000184334.1,ENSMUSG00000099011.1	Mir6380	ENSMUSG00000099011.1	ENSMUST00000184334.1	miRNA	chr3:137783535-137783615
chr3	137803434	137803490	-	ORR1B1	LTR	ERVL-MaLR	chr3	137803468	137803470	-	ENSMUST00000198262.1,ENSMUSG00000105427.1	Gm31678	ENSMUSG00000105427.1	ENSMUST00000198262.1	lincRNA	chr3:137795265-137803469
chr3	137864857	137865028	+	G-rich	Low_complexity	Low_complexity	chr3	137864979	137864981	+	ENSMUST00000138010.2,ENSMUSG00000037894.13	H2afz	ENSMUSG00000037894.13	ENSMUST00000138010.2	protein_coding	chr3:137864980-137866535
chr3	137878001	137878219	-	HAL1M8	LINE	L1	chr3	137878125	137878127	-	ENSMUST00000198291.1,ENSMUSG00000106629.1	Gm40155	ENSMUSG00000106629.1	ENSMUST00000198291.1	antisense	chr3:137875925-137878126
chr3	138221467	138221592	+	MIR3	SINE	MIR	chr3	138221470	138221472	+	ENSMUST00000199865.1,ENSMUSG00000055301.8	Adh7	ENSMUSG00000055301.8	ENSMUST00000199865.1	protein_coding	chr3:138221471-138223087
chr3	138306764	138307305	-	RLTR12A	LTR	ERVK	chr3	138307021	138307023	-	ENSMUST00000160080.1,ENSMUSG00000089635.1	Gm16559	ENSMUSG00000089635.1	ENSMUST00000160080.1	antisense	chr3:138281408-138307022
chr3	138341736	138342050	+	RMER15	LTR	ERVL	chr3	138341774	138341776	+	ENSMUST00000199673.5,ENSMUSG00000074206.7	Adh6b	ENSMUSG00000074206.7	ENSMUST00000199673.5	protein_coding	chr3:138341775-138358860
chr3	138341736	138342050	+	RMER15	LTR	ERVL	chr3	138341971	138341973	+	ENSMUST00000199718.1,ENSMUSG00000074206.7	Adh6b	ENSMUSG00000074206.7	ENSMUST00000199718.1	protein_coding	chr3:138341972-138350677
chr3	138489493	138489540	+	GC_rich	Low_complexity	Low_complexity	chr3	138489514	138489516	-	ENSMUST00000029804.12,ENSMUSG00000005813.12	Metap1	ENSMUSG00000005813.12	ENSMUST00000029804.12	protein_coding	chr3:138458956-138489515
chr3	138504204	138504313	-	ORR1A1	LTR	ERVL-MaLR	chr3	138504211	138504213	-	ENSMUST00000200122.1,ENSMUSG00000106462.1	Gm43725	ENSMUSG00000106462.1	ENSMUST00000200122.1	processed_pseudogene	chr3:138503844-138504212
chr3	138526275	138526435	-	MIR	SINE	MIR	chr3	138526424	138526426	+	ENSMUST00000200020.4,ENSMUSG00000028156.12	Eif4e	ENSMUSG00000028156.12	ENSMUST00000200020.4	protein_coding	chr3:138526425-138555399
chr3	138526275	138526435	-	MIR	SINE	MIR	chr3	138526420	138526422	+	ENSMUST00000157748.3,ENSMUSG00000088373.3	Mir1956	ENSMUSG00000088373.3	ENSMUST00000157748.3	miRNA	chr3:138526421-138526485
chr3	138601091	138601134	+	(CA)n	Simple_repeat	Simple_repeat	chr3	138601131	138601133	+	ENSMUST00000200462.1,ENSMUSG00000104680.1	Gm9415	ENSMUSG00000104680.1	ENSMUST00000200462.1	processed_pseudogene	chr3:138601132-138602452
chr3	138742191	138742274	+	G-rich	Low_complexity	Low_complexity	chr3	138742194	138742196	+	ENSMUST00000029800.8,ENSMUSG00000028152.10	Tspan5	ENSMUSG00000028152.10	ENSMUST00000029800.8	protein_coding	chr3:138742195-138907905
chr3	139075157	139075216	+	GC_rich	Low_complexity	Low_complexity	chr3	139075200	139075202	-	ENSMUST00000098574.8,ENSMUSG00000028149.12	Rap1gds1	ENSMUSG00000028149.12	ENSMUST00000098574.8	protein_coding	chr3:138925902-139075201
chr3	139075157	139075216	+	GC_rich	Low_complexity	Low_complexity	chr3	139075192	139075194	-	ENSMUST00000198538.4,ENSMUSG00000028149.12	Rap1gds1	ENSMUSG00000028149.12	ENSMUST00000198538.4	protein_coding	chr3:139014502-139075193
chr3	139417756	139417863	-	U6	snRNA	snRNA	chr3	139417862	139417864	-	ENSMUST00000083741.1,ENSMUSG00000065675.1	Gm24260	ENSMUSG00000065675.1	ENSMUST00000083741.1	snRNA	chr3:139417757-139417863
chr3	139812537	139813065	-	MT2_Mm	LTR	ERVL	chr3	139812763	139812765	-	ENSMUST00000197774.1,ENSMUSG00000105880.1	Gm43678	ENSMUSG00000105880.1	ENSMUST00000197774.1	lincRNA	chr3:139812111-139812764
chr3	140760527	140761026	-	MT2_Mm	LTR	ERVL	chr3	140760703	140760705	-	ENSMUST00000198942.1,ENSMUSG00000105777.1	Gm43049	ENSMUSG00000105777.1	ENSMUST00000198942.1	lincRNA	chr3:140692038-140760704
chr3	140760527	140761026	-	MT2_Mm	LTR	ERVL	chr3	140760689	140760691	-	ENSMUST00000198099.1,ENSMUSG00000105777.1	Gm43049	ENSMUSG00000105777.1	ENSMUST00000198099.1	lincRNA	chr3:140759978-140760690
chr3	140917441	140917618	+	MTD-int	LTR	ERVL-MaLR	chr3	140917458	140917460	-	ENSMUST00000199442.1,ENSMUSG00000104544.3	Gm32754	ENSMUSG00000104544.3	ENSMUST00000199442.1	lincRNA	chr3:140909770-140917459
chr3	142169210	142169241	+	(CCG)n	Simple_repeat	Simple_repeat	chr3	142169212	142169214	-	ENSMUST00000098568.7,ENSMUSG00000052430.15	Bmpr1b	ENSMUSG00000052430.15	ENSMUST00000098568.7	protein_coding	chr3:141840367-142169213
chr3	142728390	142728536	+	B1_Mur1	SINE	Alu	chr3	142728393	142728395	+	ENSMUST00000196928.1,ENSMUSG00000040213.13	Kyat3	ENSMUSG00000040213.13	ENSMUST00000196928.1	protein_coding	chr3:142728394-142730354
chr3	142738436	142738575	+	B1_Mus2	SINE	Alu	chr3	142738510	142738512	+	ENSMUST00000128096.1,ENSMUSG00000040213.13	Kyat3	ENSMUSG00000040213.13	ENSMUST00000128096.1	protein_coding	chr3:142738511-142744336
chr3	142764945	142765053	-	MT2B	LTR	ERVL	chr3	142765044	142765046	+	ENSMUST00000029938.9,ENSMUSG00000028271.9	Gtf2b	ENSMUSG00000028271.9	ENSMUST00000029938.9	protein_coding	chr3:142765045-142783606
chr3	142772971	142773076	-	U6	snRNA	snRNA	chr3	142773075	142773077	-	ENSMUST00000083196.1,ENSMUSG00000065130.1	Gm24457	ENSMUSG00000065130.1	ENSMUST00000083196.1	snRNA	chr3:142772972-142773076
chr3	142803105	142803133	+	(TG)n	Simple_repeat	Simple_repeat	chr3	142803119	142803121	-	ENSMUST00000200315.1,ENSMUSG00000004591.16	Pkn2	ENSMUSG00000004591.16	ENSMUST00000200315.1	protein_coding	chr3:142800034-142803120
chr3	142855637	142855875	-	MER119	DNA	hAT-Charlie	chr3	142855734	142855736	-	ENSMUST00000197529.1,ENSMUSG00000004591.16	Pkn2	ENSMUSG00000004591.16	ENSMUST00000197529.1	protein_coding	chr3:142852944-142855735
chr3	143025300	143031558	-	L1Md_F2	LINE	L1	chr3	143030613	143030615	+	ENSMUST00000197683.1,ENSMUSG00000105652.1	4930519L02Rik	ENSMUSG00000105652.1	ENSMUST00000197683.1	lincRNA	chr3:143030614-143040752
chr3	143330418	143330442	+	(TG)n	Simple_repeat	Simple_repeat	chr3	143330419	143330421	+	ENSMUST00000199409.1,ENSMUSG00000106162.1	Gm43613	ENSMUSG00000106162.1	ENSMUST00000199409.1	lincRNA	chr3:143330420-143332032
chr3	143954363	143954504	-	MIRc	SINE	MIR	chr3	143954397	143954399	-	ENSMUST00000196620.1,ENSMUSG00000105811.1	Gm42707	ENSMUSG00000105811.1	ENSMUST00000196620.1	lincRNA	chr3:143913659-143954398
chr3	144135726	144135828	+	ORR1B1	LTR	ERVL-MaLR	chr3	144135753	144135755	-	ENSMUST00000198202.1,ENSMUSG00000106367.1	Gm34078	ENSMUSG00000106367.1	ENSMUST00000198202.1	lincRNA	chr3:144101904-144135754
chr3	144202379	144202405	+	(TCC)n	Simple_repeat	Simple_repeat	chr3	144202395	144202397	-	ENSMUST00000121796.7,ENSMUSG00000028266.17	Lmo4	ENSMUSG00000028266.17	ENSMUST00000121796.7	protein_coding	chr3:144188530-144202396
chr3	144205218	144205289	+	C-rich	Low_complexity	Low_complexity	chr3	144205219	144205221	-	ENSMUST00000120539.7,ENSMUSG00000028266.17	Lmo4	ENSMUSG00000028266.17	ENSMUST00000120539.7	protein_coding	chr3:144188530-144205220
chr3	144205218	144205289	+	C-rich	Low_complexity	Low_complexity	chr3	144205219	144205221	-	ENSMUST00000196264.4,ENSMUSG00000028266.17	Lmo4	ENSMUSG00000028266.17	ENSMUST00000196264.4	protein_coding	chr3:144188683-144205220
chr3	144283678	144284224	-	MLT1E2	LTR	ERVL-MaLR	chr3	144283810	144283812	+	ENSMUST00000197669.1,ENSMUSG00000105197.1	Gm43446	ENSMUSG00000105197.1	ENSMUST00000197669.1	lincRNA	chr3:144283811-144284906
chr3	144320208	144320239	+	(CA)n	Simple_repeat	Simple_repeat	chr3	144320213	144320215	+	ENSMUST00000198471.1,ENSMUSG00000106266.1	Gm43447	ENSMUSG00000106266.1	ENSMUST00000198471.1	lincRNA	chr3:144320214-144321748
chr3	144524001	144524196	-	L1MA4A	LINE	L1	chr3	144524000	144524002	-	ENSMUST00000198100.1,ENSMUSG00000106057.1	Gm43560	ENSMUSG00000106057.1	ENSMUST00000198100.1	sense_intronic	chr3:144523229-144524001
chr3	144720057	144720182	+	(CGG)n	Simple_repeat	Simple_repeat	chr3	144720109	144720111	-	ENSMUST00000199531.4,ENSMUSG00000037062.13	Sh3glb1	ENSMUSG00000037062.13	ENSMUST00000199531.4	protein_coding	chr3:144683678-144720110
chr3	144720328	144720355	+	GC_rich	Low_complexity	Low_complexity	chr3	144720334	144720336	-	ENSMUST00000163279.5,ENSMUSG00000037062.13	Sh3glb1	ENSMUSG00000037062.13	ENSMUST00000163279.5	protein_coding	chr3:144688844-144720335
chr3	144778649	144779026	+	RLTR9A	LTR	ERVK	chr3	144779011	144779013	+	ENSMUST00000198545.1,ENSMUSG00000104841.1	Gm17743	ENSMUSG00000104841.1	ENSMUST00000198545.1	processed_pseudogene	chr3:144779012-144780686
chr3	144895914	144896318	-	RLTR10B2	LTR	ERVK	chr3	144896010	144896012	-	ENSMUST00000098551.5,ENSMUSG00000074196.10	Clca4c-ps	ENSMUSG00000074196.10	ENSMUST00000098551.5	transcribed_unprocessed_pseudogene	chr3:144879322-144896011
chr3	144947514	144947950	+	RLTR9F	LTR	ERVK	chr3	144947560	144947562	+	ENSMUST00000136170.3,ENSMUSG00000085773.3	Gm16233	ENSMUSG00000085773.3	ENSMUST00000136170.3	antisense	chr3:144947561-144954878
chr3	144972009	144972474	+	RLTR31A_Mm	LTR	ERVK	chr3	144972123	144972125	+	ENSMUST00000198898.1,ENSMUSG00000106361.1	Gm35066	ENSMUSG00000106361.1	ENSMUST00000198898.1	macro_lncRNA	chr3:144972124-144982560
chr3	145419170	145419353	-	HERV16-int	LTR	ERVL	chr3	145419325	145419327	+	ENSMUST00000199255.1,ENSMUSG00000105959.1	D530037P16Rik	ENSMUSG00000105959.1	ENSMUST00000199255.1	sense_overlapping	chr3:145419326-145420352
chr3	145515263	145515374	-	B1_Mus1	SINE	Alu	chr3	145515367	145515369	+	ENSMUST00000127379.1,ENSMUSG00000028197.4	Col24a1	ENSMUSG00000028197.4	ENSMUST00000127379.1	protein_coding	chr3:145515368-145538623
chr3	145739146	145739171	+	(CCCCCA)n	Simple_repeat	Simple_repeat	chr3	145739165	145739167	-	ENSMUST00000198263.1,ENSMUSG00000105608.1	Gm43408	ENSMUSG00000105608.1	ENSMUST00000198263.1	processed_pseudogene	chr3:145738727-145739166
chr3	145760716	145760805	-	ID4_	SINE	ID	chr3	145760747	145760749	+	ENSMUST00000120310.1,ENSMUSG00000028194.15	Ddah1	ENSMUSG00000028194.15	ENSMUST00000120310.1	protein_coding	chr3:145760748-145893266
chr3	145922707	145922814	-	B1F	SINE	Alu	chr3	145922803	145922805	+	ENSMUST00000197842.1,ENSMUSG00000028191.11	Bcl10	ENSMUSG00000028191.11	ENSMUST00000197842.1	protein_coding	chr3:145922804-145925171
chr3	146048364	146048502	-	L2b	LINE	L2	chr3	146048436	146048438	-	ENSMUST00000161104.1,ENSMUSG00000043020.13	Wdr63	ENSMUSG00000043020.13	ENSMUST00000161104.1	protein_coding	chr3:146042781-146048437
chr3	146116102	146116254	-	U1	snRNA	snRNA	chr3	146116253	146116255	-	ENSMUST00000084003.1,ENSMUSG00000065937.1	Gm25627	ENSMUSG00000065937.1	ENSMUST00000084003.1	snRNA	chr3:146116102-146116254
chr3	146378883	146378963	+	ID4	SINE	ID	chr3	146378943	146378945	-	ENSMUST00000197639.1,ENSMUSG00000105602.1	Gm10636	ENSMUSG00000105602.1	ENSMUST00000197639.1	lincRNA	chr3:146367153-146378944
chr3	146387746	146387844	-	U6	snRNA	snRNA	chr3	146387843	146387845	-	ENSMUST00000157593.1,ENSMUSG00000088218.1	Gm22078	ENSMUSG00000088218.1	ENSMUST00000157593.1	snRNA	chr3:146387742-146387844
chr3	146404970	146404991	+	GC_rich	Low_complexity	Low_complexity	chr3	146404977	146404979	+	ENSMUST00000129978.1,ENSMUSG00000036825.12	Ssx2ip	ENSMUSG00000036825.12	ENSMUST00000129978.1	protein_coding	chr3:146404978-146419325
chr3	146494788	146495276	+	RLTR11C_MM	LTR	ERVK	chr3	146495114	146495116	-	ENSMUST00000093951.2,ENSMUSG00000028188.13	Spata1	ENSMUSG00000028188.13	ENSMUST00000093951.2	protein_coding	chr3:146485411-146495115
chr3	146499685	146499750	+	GC_rich	Low_complexity	Low_complexity	chr3	146499708	146499710	-	ENSMUST00000197684.1,ENSMUSG00000028188.13	Spata1	ENSMUSG00000028188.13	ENSMUST00000197684.1	protein_coding	chr3:146475350-146499709
chr3	146499762	146499822	+	GC_rich	Low_complexity	Low_complexity	chr3	146499806	146499808	+	ENSMUST00000090031.11,ENSMUSG00000068523.12	Gng5	ENSMUSG00000068523.12	ENSMUST00000090031.11	protein_coding	chr3:146499807-146505572
chr3	146521027	146521152	+	C-rich	Low_complexity	Low_complexity	chr3	146521050	146521052	-	ENSMUST00000196909.1,ENSMUSG00000028187.10	Rpf1	ENSMUSG00000028187.10	ENSMUST00000196909.1	protein_coding	chr3:146508173-146521051
chr3	146609896	146610046	+	B3A	SINE	B2	chr3	146609984	146609986	+	ENSMUST00000197320.1,ENSMUSG00000028186.14	Uox	ENSMUSG00000028186.14	ENSMUST00000197320.1	protein_coding	chr3:146609985-146612348
chr3	146615291	146615778	-	MT2A	LTR	ERVL	chr3	146615595	146615597	-	ENSMUST00000200633.1,ENSMUSG00000028185.12	Dnase2b	ENSMUSG00000028185.12	ENSMUST00000200633.1	protein_coding	chr3:146580985-146615596
chr3	147635517	147635879	-	IAPLTR1a_Mm	LTR	ERVK	chr3	147635646	147635648	-	ENSMUST00000195819.1,ENSMUSG00000103349.1	Gm36888	ENSMUSG00000103349.1	ENSMUST00000195819.1	lincRNA	chr3:147620811-147635647
chr3	148130049	148130437	+	MTA_Mm	LTR	ERVL-MaLR	chr3	148130243	148130245	+	ENSMUST00000196226.1,ENSMUSG00000106285.1	Gm43574	ENSMUSG00000106285.1	ENSMUST00000196226.1	processed_transcript	chr3:148130244-148141598
chr3	149005391	149005587	+	LTR86A1	LTR	ERVL	chr3	149005495	149005497	+	ENSMUST00000196494.1,ENSMUSG00000105876.1	Gm43572	ENSMUSG00000105876.1	ENSMUST00000196494.1	processed_transcript	chr3:149005496-149007443
chr3	149028931	149029038	+	U6	snRNA	snRNA	chr3	149028931	149028933	+	ENSMUST00000083336.1,ENSMUSG00000065270.1	Gm25127	ENSMUSG00000065270.1	ENSMUST00000083336.1	snRNA	chr3:149028932-149029038
chr3	149340907	149341008	-	U6	snRNA	snRNA	chr3	149341007	149341009	-	ENSMUST00000158644.1,ENSMUSG00000089269.1	Gm26468	ENSMUSG00000089269.1	ENSMUST00000158644.1	snRNA	chr3:149340903-149341008
chr3	149657005	149660542	+	Lx6	LINE	L1	chr3	149660395	149660397	-	ENSMUST00000197948.1,ENSMUSG00000104785.1	Gm31121	ENSMUSG00000104785.1	ENSMUST00000197948.1	lincRNA	chr3:149562882-149660396
chr3	151023757	151024556	+	Lx8	LINE	L1	chr3	151023861	151023863	-	ENSMUST00000175089.1,ENSMUSG00000092830.1	Mir3963	ENSMUSG00000092830.1	ENSMUST00000175089.1	miRNA	chr3:151023792-151023862
chr3	151096441	151096939	-	RLTR10C	LTR	ERVK	chr3	151096766	151096768	-	ENSMUST00000196084.1,ENSMUSG00000105425.1	Gm43469	ENSMUSG00000105425.1	ENSMUST00000196084.1	TEC	chr3:151092134-151096767
chr3	151333245	151333398	-	UCON2	Unknown	Unknown	chr3	151333348	151333350	+	ENSMUST00000197054.1,ENSMUSG00000105401.1	Gm42949	ENSMUSG00000105401.1	ENSMUST00000197054.1	lincRNA	chr3:151333349-151337638
chr3	151608342	151608449	+	U6	snRNA	snRNA	chr3	151608342	151608344	+	ENSMUST00000083204.1,ENSMUSG00000065138.1	Gm24458	ENSMUSG00000065138.1	ENSMUST00000083204.1	snRNA	chr3:151608343-151608449
chr3	151886914	151887407	+	MT2_Mm	LTR	ERVL	chr3	151887302	151887304	+	ENSMUST00000196418.1,ENSMUSG00000104909.1	Gm43617	ENSMUSG00000104909.1	ENSMUST00000196418.1	lincRNA	chr3:151887303-151895101
chr3	151926191	151927151	-	RLTR25B	LTR	ERVK	chr3	151926408	151926410	-	ENSMUST00000157372.1,ENSMUSG00000087997.1	Gm25056	ENSMUSG00000087997.1	ENSMUST00000157372.1	snRNA	chr3:151926348-151926409
chr3	152106556	152106816	+	MTE2a	LTR	ERVL-MaLR	chr3	152106579	152106581	-	ENSMUST00000130196.1,ENSMUSG00000039131.15	Gipc2	ENSMUSG00000039131.15	ENSMUST00000130196.1	protein_coding	chr3:152093882-152106580
chr3	152106556	152106816	+	MTE2a	LTR	ERVL-MaLR	chr3	152106657	152106659	+	ENSMUST00000198961.1,ENSMUSG00000105698.1	Gm31881	ENSMUSG00000105698.1	ENSMUST00000198961.1	antisense	chr3:152106658-152107383
chr3	152108386	152108561	+	GA-rich	Low_complexity	Low_complexity	chr3	152108521	152108523	-	ENSMUST00000152283.7,ENSMUSG00000039131.15	Gipc2	ENSMUSG00000039131.15	ENSMUST00000152283.7	protein_coding	chr3:152093533-152108522
chr3	152146613	152147009	-	MTB	LTR	ERVL-MaLR	chr3	152146787	152146789	-	ENSMUST00000200501.4,ENSMUSG00000039131.15	Gipc2	ENSMUSG00000039131.15	ENSMUST00000200501.4	protein_coding	chr3:152094194-152146788
chr3	152227278	152227379	-	L1MC4	LINE	L1	chr3	152227304	152227306	+	ENSMUST00000198046.1,ENSMUSG00000028034.15	Fubp1	ENSMUSG00000028034.15	ENSMUST00000198046.1	protein_coding	chr3:152227305-152231310
chr3	152244814	152244960	-	B1_Mus2	SINE	Alu	chr3	152244824	152244826	-	ENSMUST00000199983.1,ENSMUSG00000039103.12	Nexn	ENSMUSG00000039103.12	ENSMUST00000199983.1	protein_coding	chr3:152238252-152244825
chr3	152262397	152262636	-	MTD	LTR	ERVL-MaLR	chr3	152262529	152262531	-	ENSMUST00000199685.1,ENSMUSG00000039103.12	Nexn	ENSMUSG00000039103.12	ENSMUST00000199685.1	protein_coding	chr3:152248183-152262530
chr3	152263448	152263596	+	B1_Mus1	SINE	Alu	chr3	152263505	152263507	-	ENSMUST00000198648.4,ENSMUSG00000039103.12	Nexn	ENSMUSG00000039103.12	ENSMUST00000198648.4	protein_coding	chr3:152248063-152263506
chr3	152265775	152265820	+	GC_rich	Low_complexity	Low_complexity	chr3	152265794	152265796	-	ENSMUST00000196815.4,ENSMUSG00000039103.12	Nexn	ENSMUSG00000039103.12	ENSMUST00000196815.4	protein_coding	chr3:152248032-152265795
chr3	152285388	152285558	+	(CTGTG)n	Simple_repeat	Simple_repeat	chr3	152285550	152285552	-	ENSMUST00000199872.1,ENSMUSG00000054942.13	Miga1	ENSMUSG00000054942.13	ENSMUST00000199872.1	protein_coding	chr3:152281744-152285551
chr3	152337921	152338059	+	B1_Mur1	SINE	Alu	chr3	152337933	152337935	-	ENSMUST00000196265.4,ENSMUSG00000054942.13	Miga1	ENSMUSG00000054942.13	ENSMUST00000196265.4	protein_coding	chr3:152297173-152337934
chr3	152385091	152385218	-	B1_Mus2	SINE	Alu	chr3	152385216	152385218	-	ENSMUST00000200075.1,ENSMUSG00000105710.1	Gm43859	ENSMUSG00000105710.1	ENSMUST00000200075.1	TEC	chr3:152383806-152385217
chr3	152386081	152386361	-	MTE-int	LTR	ERVL-MaLR	chr3	152386259	152386261	+	ENSMUST00000199418.1,ENSMUSG00000104546.1	Gm43858	ENSMUSG00000104546.1	ENSMUST00000199418.1	TEC	chr3:152386260-152388037
chr3	152394218	152394252	+	(CA)n	Simple_repeat	Simple_repeat	chr3	152394239	152394241	-	ENSMUST00000200343.1,ENSMUSG00000104548.1	Gm43857	ENSMUSG00000104548.1	ENSMUST00000200343.1	TEC	chr3:152391162-152394240
chr3	152396077	152396129	+	GC_rich	Low_complexity	Low_complexity	chr3	152396078	152396080	+	ENSMUST00000197987.4,ENSMUSG00000039068.16	Zzz3	ENSMUSG00000039068.16	ENSMUST00000197987.4	protein_coding	chr3:152396079-152448826
chr3	152668328	152668457	+	(CA)n	Simple_repeat	Simple_repeat	chr3	152668359	152668361	-	ENSMUST00000045262.10,ENSMUSG00000039058.11	Ak5	ENSMUSG00000039058.11	ENSMUST00000045262.10	protein_coding	chr3:152462815-152668360
chr3	152762979	152765094	-	Lx8	LINE	L1	chr3	152763380	152763382	+	ENSMUST00000160651.1,ENSMUSG00000039047.17	Pigk	ENSMUSG00000039047.17	ENSMUST00000160651.1	protein_coding	chr3:152763381-152766524
chr3	153182761	153182843	-	L1MC1	LINE	L1	chr3	153182814	153182816	-	ENSMUST00000198047.4,ENSMUSG00000105337.4	1700094M23Rik	ENSMUSG00000105337.4	ENSMUST00000198047.4	lincRNA	chr3:153162728-153182815
chr3	153478032	153478710	+	RMER1B	Other	Other	chr3	153478209	153478211	-	ENSMUST00000197297.1,ENSMUSG00000104908.1	1700015C17Rik	ENSMUSG00000104908.1	ENSMUST00000197297.1	sense_intronic	chr3:153467216-153478210
chr3	153621682	153621884	+	7SK	RNA	RNA	chr3	153621701	153621703	+	ENSMUST00000158751.1,ENSMUSG00000089376.1	Gm22136	ENSMUSG00000089376.1	ENSMUST00000158751.1	misc_RNA	chr3:153621702-153621969
chr3	153785037	153785187	+	B1_Mus1	SINE	Alu	chr3	153785052	153785054	+	ENSMUST00000079884.1,ENSMUSG00000058508.1	Gm10042	ENSMUSG00000058508.1	ENSMUST00000079884.1	pseudogene	chr3:153785053-153785134
chr3	153879848	153880243	-	MTA_Mm	LTR	ERVL-MaLR	chr3	153880242	153880244	-	ENSMUST00000191504.6,ENSMUSG00000005493.15	Msh4	ENSMUSG00000005493.15	ENSMUST00000191504.6	protein_coding	chr3:153857269-153880243
chr3	153879848	153880243	-	MTA_Mm	LTR	ERVL-MaLR	chr3	153880242	153880244	-	ENSMUST00000191606.1,ENSMUSG00000005493.15	Msh4	ENSMUSG00000005493.15	ENSMUST00000191606.1	protein_coding	chr3:153857269-153880243
chr3	153904686	153904869	-	B3	SINE	B2	chr3	153904730	153904732	-	ENSMUST00000188338.6,ENSMUSG00000005493.15	Msh4	ENSMUSG00000005493.15	ENSMUST00000188338.6	protein_coding	chr3:153857269-153904731
chr3	154222460	154222494	+	CT-rich	Low_complexity	Low_complexity	chr3	154222481	154222483	+	ENSMUST00000128362.1,ENSMUSG00000028360.9	Slc44a5	ENSMUSG00000028360.9	ENSMUST00000128362.1	protein_coding	chr3:154222482-154225525
chr3	154249434	154249503	+	(GA)n	Simple_repeat	Simple_repeat	chr3	154249499	154249501	-	ENSMUST00000200319.1,ENSMUSG00000106500.1	Gm42540	ENSMUSG00000106500.1	ENSMUST00000200319.1	TEC	chr3:154247493-154249500
chr3	154331945	154332011	+	(GA)n	Simple_repeat	Simple_repeat	chr3	154331996	154331998	+	ENSMUST00000181234.1,ENSMUSG00000093738.2	AI606473	ENSMUSG00000093738.2	ENSMUST00000181234.1	processed_transcript	chr3:154331997-154332798
chr3	154597335	154597361	+	(T)n	Simple_repeat	Simple_repeat	chr3	154597351	154597353	+	ENSMUST00000140644.7,ENSMUSG00000028199.18	Cryz	ENSMUSG00000028199.18	ENSMUST00000140644.7	protein_coding	chr3:154597352-154611438
chr3	154663830	154663892	+	(TG)n	Simple_repeat	Simple_repeat	chr3	154663858	154663860	+	ENSMUST00000098496.8,ENSMUSG00000078161.8	Erich3	ENSMUSG00000078161.8	ENSMUST00000098496.8	protein_coding	chr3:154663859-154767790
chr3	154711010	154711225	-	MamRep605	LTR?	LTR?	chr3	154711107	154711109	+	ENSMUST00000051862.7,ENSMUSG00000078161.8	Erich3	ENSMUSG00000078161.8	ENSMUST00000051862.7	protein_coding	chr3:154711108-154749012
chr3	154711228	154711390	-	MamRep605	LTR?	LTR?	chr3	154711342	154711344	-	ENSMUST00000174217.1,ENSMUSG00000092522.1	Gm20389	ENSMUSG00000092522.1	ENSMUST00000174217.1	antisense	chr3:154708658-154711343
chr3	155092017	155092122	+	HY1	scRNA	scRNA	chr3	155092017	155092019	+	ENSMUST00000082831.1,ENSMUSG00000064765.1	Gm26456	ENSMUSG00000064765.1	ENSMUST00000082831.1	misc_RNA	chr3:155092018-155092128
chr3	155093400	155093427	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr3	155093402	155093404	-	ENSMUST00000066568.5,ENSMUSG00000053870.7	Fpgt	ENSMUSG00000053870.7	ENSMUST00000066568.5	protein_coding	chr3:155084918-155093403
chr3	155094327	155094899	-	L2	LINE	L2	chr3	155094864	155094866	+	ENSMUST00000194899.1,ENSMUSG00000104122.1	Gm37482	ENSMUSG00000104122.1	ENSMUST00000194899.1	TEC	chr3:155094865-155097655
chr3	155788365	155788469	-	U6	snRNA	snRNA	chr3	155788467	155788469	-	ENSMUST00000083873.1,ENSMUSG00000065807.1	Gm23038	ENSMUSG00000065807.1	ENSMUST00000083873.1	snRNA	chr3:155788365-155788468
chr3	155902914	155908010	+	L1Md_F2	LINE	L1	chr3	155903347	155903349	+	ENSMUST00000195740.1,ENSMUSG00000102443.1	Gm37102	ENSMUSG00000102443.1	ENSMUST00000195740.1	processed_pseudogene	chr3:155903348-155904452
chr3	155902914	155908010	+	L1Md_F2	LINE	L1	chr3	155904508	155904510	+	ENSMUST00000193321.1,ENSMUSG00000104377.1	Gm37515	ENSMUSG00000104377.1	ENSMUST00000193321.1	processed_pseudogene	chr3:155904509-155908325
chr3	156045664	156046070	-	MTA_Mm	LTR	ERVL-MaLR	chr3	156045855	156045857	-	ENSMUST00000198230.1,ENSMUSG00000104826.1	Gm42947	ENSMUSG00000104826.1	ENSMUST00000198230.1	lincRNA	chr3:156040102-156045856
chr3	156561780	156561824	+	GC_rich	Low_complexity	Low_complexity	chr3	156561793	156561795	+	ENSMUST00000074015.10,ENSMUSG00000040037.13	Negr1	ENSMUSG00000040037.13	ENSMUST00000074015.10	protein_coding	chr3:156561794-157316445
chr3	156703883	156703915	+	(T)n	Simple_repeat	Simple_repeat	chr3	156703899	156703901	+	ENSMUST00000196086.1,ENSMUSG00000106047.1	Gm42942	ENSMUSG00000106047.1	ENSMUST00000196086.1	TEC	chr3:156703900-156705227
chr3	156725381	156731813	-	L1Md_T	LINE	L1	chr3	156731097	156731099	+	ENSMUST00000199676.1,ENSMUSG00000106385.1	Gm42943	ENSMUSG00000106385.1	ENSMUST00000199676.1	TEC	chr3:156731098-156734339
chr3	157208694	157208975	+	MTE2b	LTR	ERVL-MaLR	chr3	157208859	157208861	-	ENSMUST00000195173.1,ENSMUSG00000102322.1	4930566N20Rik	ENSMUSG00000102322.1	ENSMUST00000195173.1	TEC	chr3:157207662-157208860
chr3	157237224	157237331	-	U6	snRNA	snRNA	chr3	157237330	157237332	-	ENSMUST00000177876.1,ENSMUSG00000094982.1	Gm23725	ENSMUSG00000094982.1	ENSMUST00000177876.1	snRNA	chr3:157237225-157237331
chr3	157365998	157366104	+	U6	snRNA	snRNA	chr3	157365997	157365999	+	ENSMUST00000082576.1,ENSMUSG00000064510.1	Gm22458	ENSMUSG00000064510.1	ENSMUST00000082576.1	snRNA	chr3:157365998-157366104
chr3	157398261	157398368	-	U6	snRNA	snRNA	chr3	157398367	157398369	-	ENSMUST00000180026.1,ENSMUSG00000096848.1	Gm23379	ENSMUSG00000096848.1	ENSMUST00000180026.1	snRNA	chr3:157398262-157398368
chr3	157538461	157539380	-	Lx8	LINE	L1	chr3	157539049	157539051	+	ENSMUST00000196900.1,ENSMUSG00000028180.18	Zranb2	ENSMUSG00000028180.18	ENSMUST00000196900.1	protein_coding	chr3:157539050-157541765
chr3	157726215	157726708	-	MT2_Mm	LTR	ERVL	chr3	157726407	157726409	-	ENSMUST00000199819.1,ENSMUSG00000106632.1	Gm33466	ENSMUSG00000106632.1	ENSMUST00000199819.1	lincRNA	chr3:157720404-157726408
chr3	157925547	157925748	-	B2_Mm1t	SINE	B2	chr3	157925710	157925712	+	ENSMUST00000196971.1,ENSMUSG00000028177.13	1810013D15Rik	ENSMUSG00000028177.13	ENSMUST00000196971.1	antisense	chr3:157925711-157938355
chr3	157947452	157947488	+	GC_rich	Low_complexity	Low_complexity	chr3	157947465	157947467	+	ENSMUST00000197872.4,ENSMUSG00000039988.14	Ankrd13c	ENSMUSG00000039988.14	ENSMUST00000197872.4	protein_coding	chr3:157947466-158006837
chr3	157979605	157980271	-	Lx2B2	LINE	L1	chr3	157980247	157980249	+	ENSMUST00000199446.1,ENSMUSG00000105643.1	Gm42611	ENSMUSG00000105643.1	ENSMUST00000199446.1	TEC	chr3:157980248-157983654
chr3	157985826	157988590	+	L1_Mus1	LINE	L1	chr3	157988520	157988522	+	ENSMUST00000200516.1,ENSMUSG00000039988.14	Ankrd13c	ENSMUSG00000039988.14	ENSMUST00000200516.1	protein_coding	chr3:157988521-157994744
chr3	157998507	157998528	+	(T)n	Simple_repeat	Simple_repeat	chr3	157998510	157998512	+	ENSMUST00000199757.1,ENSMUSG00000039988.14	Ankrd13c	ENSMUSG00000039988.14	ENSMUST00000199757.1	protein_coding	chr3:157998511-158003096
chr3	158023614	158023730	+	GA-rich	Low_complexity	Low_complexity	chr3	158023668	158023670	-	ENSMUST00000199520.4,ENSMUSG00000055436.18	Srsf11	ENSMUSG00000055436.18	ENSMUST00000199520.4	protein_coding	chr3:158013990-158023669
chr3	159839615	159839679	+	G-rich	Low_complexity	Low_complexity	chr3	159839671	159839673	+	ENSMUST00000068952.9,ENSMUSG00000028173.10	Wls	ENSMUSG00000028173.10	ENSMUST00000068952.9	protein_coding	chr3:159839672-159936023
chr3	159875666	159876072	-	MLT1F2	LTR	ERVL-MaLR	chr3	159875845	159875847	+	ENSMUST00000199465.1,ENSMUSG00000105990.1	Gm43307	ENSMUSG00000105990.1	ENSMUST00000199465.1	TEC	chr3:159875846-159878216
chr3	159916257	159916361	-	U6	snRNA	snRNA	chr3	159916360	159916362	-	ENSMUST00000101953.1,ENSMUSG00000075903.1	Gm23941	ENSMUSG00000075903.1	ENSMUST00000101953.1	snRNA	chr3:159916255-159916361
chr3	159916361	159916419	-	Charlie4	DNA	hAT-Charlie	chr3	159916360	159916362	-	ENSMUST00000101953.1,ENSMUSG00000075903.1	Gm23941	ENSMUSG00000075903.1	ENSMUST00000101953.1	snRNA	chr3:159916255-159916361
chr4	3243673	3246357	-	L1_Mus1	LINE	L1	chr4	3246004	3246006	+	ENSMUST00000133960.1,ENSMUSG00000085180.1	AI838599	ENSMUSG00000085180.1	ENSMUST00000133960.1	lincRNA	chr4:3246005-3258092
chr4	3537022	3537417	+	MTA_Mm	LTR	ERVL-MaLR	chr4	3537089	3537091	+	ENSMUST00000174896.2,ENSMUSG00000094253.1	Mir3471-2	ENSMUSG00000094253.1	ENSMUST00000174896.2	miRNA	chr4:3537090-3537191
chr4	3552103	3552169	-	ID4	SINE	ID	chr4	3552156	3552158	-	ENSMUST00000134806.1,ENSMUSG00000028232.13	Tmem68	ENSMUSG00000028232.13	ENSMUST00000134806.1	protein_coding	chr4:3550328-3552157
chr4	3574507	3574542	-	B4	SINE	B4	chr4	3574526	3574528	-	ENSMUST00000134451.1,ENSMUSG00000028232.13	Tmem68	ENSMUSG00000028232.13	ENSMUST00000134451.1	protein_coding	chr4:3569537-3574527
chr4	3598521	3598555	+	(GAA)n	Simple_repeat	Simple_repeat	chr4	3598553	3598555	+	ENSMUST00000130514.1,ENSMUSG00000028233.6	Tgs1	ENSMUSG00000028233.6	ENSMUST00000130514.1	protein_coding	chr4:3598554-3602551
chr4	3938394	3938539	+	C-rich	Low_complexity	Low_complexity	chr4	3938404	3938406	-	ENSMUST00000137439.7,ENSMUSG00000003282.9	Plag1	ENSMUSG00000003282.9	ENSMUST00000137439.7	protein_coding	chr4:3904890-3938405
chr4	3938394	3938539	+	C-rich	Low_complexity	Low_complexity	chr4	3938422	3938424	-	ENSMUST00000151543.1,ENSMUSG00000003282.9	Plag1	ENSMUSG00000003282.9	ENSMUST00000151543.1	protein_coding	chr4:3905549-3938423
chr4	4077347	4077731	-	MTD	LTR	ERVL-MaLR	chr4	4077521	4077523	-	ENSMUST00000108383.1,ENSMUSG00000071019.11	Sdr16c6	ENSMUSG00000071019.11	ENSMUST00000108383.1	protein_coding	chr4:4055931-4077522
chr4	5632028	5633113	-	Lx8	LINE	L1	chr4	5632327	5632329	+	ENSMUST00000156903.7,ENSMUSG00000086066.7	4930423M02Rik	ENSMUSG00000086066.7	ENSMUST00000156903.7	lincRNA	chr4:5632328-5642284
chr4	5632028	5633113	-	Lx8	LINE	L1	chr4	5632335	5632337	+	ENSMUST00000130895.1,ENSMUSG00000086066.7	4930423M02Rik	ENSMUSG00000086066.7	ENSMUST00000130895.1	lincRNA	chr4:5632336-5641757
chr4	6446177	6446368	-	MTD	LTR	ERVL-MaLR	chr4	6446326	6446328	-	ENSMUST00000145399.7,ENSMUSG00000028245.15	Nsmaf	ENSMUSG00000028245.15	ENSMUST00000145399.7	protein_coding	chr4:6429729-6446327
chr4	6538928	6539605	+	Lx2B	LINE	L1	chr4	6539560	6539562	+	ENSMUST00000117807.1,ENSMUSG00000081388.1	Gm11801	ENSMUSG00000081388.1	ENSMUST00000117807.1	processed_pseudogene	chr4:6539561-6540306
chr4	7759380	7759687	+	RLTR27	LTR	ERVK	chr4	7759669	7759671	+	ENSMUST00000127180.1,ENSMUSG00000085630.1	Gm11795	ENSMUSG00000085630.1	ENSMUST00000127180.1	lincRNA	chr4:7759670-7763930
chr4	8118185	8118623	+	RLTR45-int	LTR	ERVK	chr4	8118619	8118621	+	ENSMUST00000120050.1,ENSMUSG00000083068.1	Gm11800	ENSMUSG00000083068.1	ENSMUST00000120050.1	processed_pseudogene	chr4:8118620-8119736
chr4	8118619	8118759	+	RLTR45-int	LTR	ERVK	chr4	8118619	8118621	+	ENSMUST00000120050.1,ENSMUSG00000083068.1	Gm11800	ENSMUSG00000083068.1	ENSMUST00000120050.1	processed_pseudogene	chr4:8118620-8119736
chr4	8235513	8235907	+	MTA_Mm	LTR	ERVL-MaLR	chr4	8235581	8235583	+	ENSMUST00000178456.1,ENSMUSG00000096388.1	Gm25355	ENSMUSG00000096388.1	ENSMUST00000178456.1	miRNA	chr4:8235582-8235682
chr4	8454163	8454278	-	PB1D10	SINE	Alu	chr4	8454246	8454248	-	ENSMUST00000194755.1,ENSMUSG00000103127.1	Gm37386	ENSMUSG00000103127.1	ENSMUST00000194755.1	TEC	chr4:8438522-8454247
chr4	8690347	8690450	+	(CG)n	Simple_repeat	Simple_repeat	chr4	8690405	8690407	+	ENSMUST00000170457.1,ENSMUSG00000041235.12	Chd7	ENSMUSG00000041235.12	ENSMUST00000170457.1	protein_coding	chr4:8690406-8755906
chr4	8690453	8690502	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	8690469	8690471	+	ENSMUST00000127476.7,ENSMUSG00000041235.12	Chd7	ENSMUSG00000041235.12	ENSMUST00000127476.7	protein_coding	chr4:8690470-8785591
chr4	8691232	8691373	+	GC_rich	Low_complexity	Low_complexity	chr4	8691364	8691366	+	ENSMUST00000051558.9,ENSMUSG00000041235.12	Chd7	ENSMUSG00000041235.12	ENSMUST00000051558.9	protein_coding	chr4:8691365-8867659
chr4	8840061	8840327	-	MLT1A0	LTR	ERVL-MaLR	chr4	8840321	8840323	+	ENSMUST00000130709.1,ENSMUSG00000041235.12	Chd7	ENSMUSG00000041235.12	ENSMUST00000130709.1	protein_coding	chr4:8840322-8844721
chr4	9210002	9210107	+	U6	snRNA	snRNA	chr4	9210002	9210004	+	ENSMUST00000082782.1,ENSMUSG00000075958.1	Gm23423	ENSMUSG00000075958.1	ENSMUST00000082782.1	snRNA	chr4:9210003-9210108
chr4	9311616	9312215	+	Lx5	LINE	L1	chr4	9311755	9311757	+	ENSMUST00000141085.7,ENSMUSG00000041216.15	Clvs1	ENSMUSG00000041216.15	ENSMUST00000141085.7	protein_coding	chr4:9311756-9429803
chr4	9695803	9695920	-	L1_Rod	LINE	L1	chr4	9695806	9695808	-	ENSMUST00000082764.1,ENSMUSG00000064698.1	Gm24152	ENSMUSG00000064698.1	ENSMUST00000082764.1	snRNA	chr4:9695645-9695807
chr4	10489314	10489685	-	RLTR10	LTR	ERVK	chr4	10489361	10489363	-	ENSMUST00000139423.1,ENSMUSG00000086455.1	Gm11815	ENSMUSG00000086455.1	ENSMUST00000139423.1	lincRNA	chr4:10487956-10489362
chr4	10580523	10581287	+	L1_Mus1	LINE	L1	chr4	10580811	10580813	+	ENSMUST00000118586.1,ENSMUSG00000081361.1	Gm11813	ENSMUSG00000081361.1	ENSMUST00000118586.1	processed_pseudogene	chr4:10580812-10581102
chr4	10742696	10743117	-	MTE2b	LTR	ERVL-MaLR	chr4	10742903	10742905	-	ENSMUST00000145856.1,ENSMUSG00000086080.7	1700123O12Rik	ENSMUSG00000086080.7	ENSMUST00000145856.1	lincRNA	chr4:10479962-10742904
chr4	10845571	10845680	-	MTA_Mm	LTR	ERVL-MaLR	chr4	10845629	10845631	-	ENSMUST00000175139.1,ENSMUSG00000092880.1	Mir3471-1	ENSMUSG00000092880.1	ENSMUST00000175139.1	miRNA	chr4:10845500-10845630
chr4	10874063	10874145	+	tRNA-Ser-TCY	tRNA	tRNA	chr4	10874063	10874065	+	ENSMUST00000197675.1,ENSMUSG00000106355.1	n-TSaga9	ENSMUSG00000106355.1	ENSMUST00000197675.1	miRNA	chr4:10874064-10874170
chr4	11007661	11007721	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr4	11007675	11007677	-	ENSMUST00000054776.3,ENSMUSG00000049969.3	Plekhf2	ENSMUSG00000049969.3	ENSMUST00000054776.3	protein_coding	chr4:10988662-11007676
chr4	11122737	11122840	+	B1F	SINE	Alu	chr4	11122804	11122806	+	ENSMUST00000151138.7,ENSMUSG00000086765.7	Gm11827	ENSMUSG00000086765.7	ENSMUST00000151138.7	lincRNA	chr4:11122805-11126998
chr4	11502817	11502990	-	B3A	SINE	B2	chr4	11502838	11502840	-	ENSMUST00000141538.1,ENSMUSG00000086625.1	Gm11831	ENSMUSG00000086625.1	ENSMUST00000141538.1	antisense	chr4:11501456-11502839
chr4	11948701	11948945	+	(TATG)n	Simple_repeat	Simple_repeat	chr4	11948886	11948888	+	ENSMUST00000117013.2,ENSMUSG00000080663.2	Gm25002	ENSMUSG00000080663.2	ENSMUST00000117013.2	miRNA	chr4:11948887-11948950
chr4	11965747	11965866	+	G-rich	Low_complexity	Low_complexity	chr4	11965820	11965822	-	ENSMUST00000108301.7,ENSMUSG00000049225.14	Pdp1	ENSMUSG00000049225.14	ENSMUST00000108301.7	protein_coding	chr4:11959807-11965821
chr4	11966379	11966469	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr4	11966451	11966453	-	ENSMUST00000108297.2,ENSMUSG00000049225.14	Pdp1	ENSMUSG00000049225.14	ENSMUST00000108297.2	protein_coding	chr4:11958184-11966452
chr4	11966379	11966469	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr4	11966426	11966428	-	ENSMUST00000108299.1,ENSMUSG00000049225.14	Pdp1	ENSMUSG00000049225.14	ENSMUST00000108299.1	protein_coding	chr4:11959807-11966427
chr4	11966379	11966469	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr4	11966419	11966421	-	ENSMUST00000056050.4,ENSMUSG00000049225.14	Pdp1	ENSMUSG00000049225.14	ENSMUST00000056050.4	protein_coding	chr4:11959811-11966420
chr4	11980576	11980823	+	B4A	SINE	B4	chr4	11980668	11980670	+	ENSMUST00000181295.1,ENSMUSG00000097459.1	Gm26895	ENSMUSG00000097459.1	ENSMUST00000181295.1	lincRNA	chr4:11980669-11988471
chr4	12271190	12271593	+	MTB_Mm	LTR	ERVL-MaLR	chr4	12271398	12271400	+	ENSMUST00000155156.1,ENSMUSG00000085909.1	Gm11846	ENSMUSG00000085909.1	ENSMUST00000155156.1	lincRNA	chr4:12271399-12314583
chr4	12812705	12812814	+	5S	rRNA	rRNA	chr4	12812705	12812707	+	ENSMUST00000083889.1,ENSMUSG00000065823.1	n-R5s182	ENSMUSG00000065823.1	ENSMUST00000083889.1	rRNA	chr4:12812706-12812812
chr4	13075879	13076337	+	RMER4A	LTR	ERVK	chr4	13076139	13076141	+	ENSMUST00000139614.1,ENSMUSG00000086227.1	Gm11820	ENSMUSG00000086227.1	ENSMUST00000139614.1	lincRNA	chr4:13076140-13096806
chr4	13266984	13267057	+	(CATA)n	Simple_repeat	Simple_repeat	chr4	13267049	13267051	-	ENSMUST00000116709.2,ENSMUSG00000080359.2	Gm26250	ENSMUSG00000080359.2	ENSMUST00000116709.2	miRNA	chr4:13266985-13267050
chr4	13622721	13623455	+	MLTR25A	LTR	ERVK	chr4	13622762	13622764	-	ENSMUST00000175081.2,ENSMUSG00000092822.2	Gm23162	ENSMUSG00000092822.2	ENSMUST00000175081.2	miRNA	chr4:13622643-13622763
chr4	14237352	14238260	+	RMER17B	LTR	ERVK	chr4	14237449	14237451	-	ENSMUST00000150273.1,ENSMUSG00000086068.1	1700120G11Rik	ENSMUSG00000086068.1	ENSMUST00000150273.1	lincRNA	chr4:14219496-14237450
chr4	14864068	14864103	+	(TCC)n	Simple_repeat	Simple_repeat	chr4	14864075	14864077	+	ENSMUST00000029875.3,ENSMUSG00000028221.3	Pip4p2	ENSMUSG00000028221.3	ENSMUST00000029875.3	protein_coding	chr4:14864076-14915176
chr4	14929808	14930039	+	MTEa	LTR	ERVL-MaLR	chr4	14929907	14929909	+	ENSMUST00000137532.7,ENSMUSG00000086587.7	Gm11837	ENSMUSG00000086587.7	ENSMUST00000137532.7	antisense	chr4:14929908-14952893
chr4	14930586	14930678	+	GC_rich	Low_complexity	Low_complexity	chr4	14930660	14930662	+	ENSMUST00000136992.7,ENSMUSG00000086587.7	Gm11837	ENSMUSG00000086587.7	ENSMUST00000136992.7	antisense	chr4:14930661-14953030
chr4	14930586	14930678	+	GC_rich	Low_complexity	Low_complexity	chr4	14930675	14930677	+	ENSMUST00000152024.1,ENSMUSG00000086587.7	Gm11837	ENSMUSG00000086587.7	ENSMUST00000152024.1	antisense	chr4:14930676-14952905
chr4	15383147	15383252	+	U6	snRNA	snRNA	chr4	15383147	15383149	+	ENSMUST00000178536.1,ENSMUSG00000096738.1	Gm24317	ENSMUSG00000096738.1	ENSMUST00000178536.1	snRNA	chr4:15383148-15383254
chr4	15819709	15820135	+	MT2_Mm	LTR	ERVL	chr4	15819908	15819910	+	ENSMUST00000179294.1,ENSMUSG00000094515.1	Gm24567	ENSMUSG00000094515.1	ENSMUST00000179294.1	miRNA	chr4:15819909-15820029
chr4	16163601	16163752	+	CT-rich	Low_complexity	Low_complexity	chr4	16163646	16163648	-	ENSMUST00000037035.11,ENSMUSG00000041135.15	Ripk2	ENSMUSG00000041135.15	ENSMUST00000037035.11	protein_coding	chr4:16122733-16163647
chr4	16163601	16163752	+	CT-rich	Low_complexity	Low_complexity	chr4	16163642	16163644	-	ENSMUST00000183871.1,ENSMUSG00000041135.15	Ripk2	ENSMUSG00000041135.15	ENSMUST00000183871.1	protein_coding	chr4:16122741-16163643
chr4	16675922	16676029	+	U6	snRNA	snRNA	chr4	16675922	16675924	+	ENSMUST00000179782.1,ENSMUSG00000096423.1	Gm24978	ENSMUSG00000096423.1	ENSMUST00000179782.1	snRNA	chr4:16675923-16676029
chr4	16861688	16861794	-	U6	snRNA	snRNA	chr4	16861793	16861795	-	ENSMUST00000082685.1,ENSMUSG00000064619.1	Gm23975	ENSMUSG00000064619.1	ENSMUST00000082685.1	snRNA	chr4:16861689-16861794
chr4	16861794	16861883	-	4.5SRNA	scRNA	scRNA	chr4	16861793	16861795	-	ENSMUST00000082685.1,ENSMUSG00000064619.1	Gm23975	ENSMUSG00000064619.1	ENSMUST00000082685.1	snRNA	chr4:16861689-16861794
chr4	17657802	17658220	-	RLTR10	LTR	ERVK	chr4	17657962	17657964	-	ENSMUST00000132219.1,ENSMUSG00000085478.1	Gm11851	ENSMUSG00000085478.1	ENSMUST00000132219.1	lincRNA	chr4:17656675-17657963
chr4	17933321	17934416	+	MTA_Mm-int	LTR	ERVL-MaLR	chr4	17933990	17933992	+	ENSMUST00000149353.1,ENSMUSG00000028226.15	Mmp16	ENSMUSG00000028226.15	ENSMUST00000149353.1	protein_coding	chr4:17933991-18011695
chr4	18406630	18407663	+	MTB-int	LTR	ERVL-MaLR	chr4	18407348	18407350	+	ENSMUST00000133363.1,ENSMUSG00000087402.1	Gm11867	ENSMUSG00000087402.1	ENSMUST00000133363.1	processed_transcript	chr4:18407349-18891842
chr4	18708748	18708914	+	7SK	RNA	RNA	chr4	18708747	18708749	+	ENSMUST00000158953.1,ENSMUSG00000089578.1	Gm25971	ENSMUSG00000089578.1	ENSMUST00000158953.1	misc_RNA	chr4:18708748-18709033
chr4	18730548	18730757	+	Lx8b	LINE	L1	chr4	18730547	18730549	-	ENSMUST00000157875.1,ENSMUSG00000088500.1	Gm24419	ENSMUSG00000088500.1	ENSMUST00000157875.1	misc_RNA	chr4:18730217-18730548
chr4	19720029	19720578	-	RMER19B	LTR	ERVK	chr4	19720198	19720200	-	ENSMUST00000131133.1,ENSMUSG00000086071.7	Gm12354	ENSMUSG00000086071.7	ENSMUST00000131133.1	lincRNA	chr4:19716732-19720199
chr4	19985277	19985401	+	B3A	SINE	B2	chr4	19985387	19985389	-	ENSMUST00000125909.1,ENSMUSG00000086332.1	4930480G23Rik	ENSMUSG00000086332.1	ENSMUST00000125909.1	antisense	chr4:19979445-19985388
chr4	21328417	21328520	+	(TG)n	Simple_repeat	Simple_repeat	chr4	21328519	21328521	+	ENSMUST00000158697.1,ENSMUSG00000089322.1	Gm25977	ENSMUSG00000089322.1	ENSMUST00000158697.1	snoRNA	chr4:21328520-21328604
chr4	21858701	21858851	+	B1F	SINE	Alu	chr4	21858725	21858727	+	ENSMUST00000150927.1,ENSMUSG00000028248.15	Pnisr	ENSMUSG00000028248.15	ENSMUST00000150927.1	protein_coding	chr4:21858726-21862043
chr4	22357570	22357592	+	GC_rich	Low_complexity	Low_complexity	chr4	22357570	22357572	+	ENSMUST00000184455.7,ENSMUSG00000040410.14	Fbxl4	ENSMUSG00000040410.14	ENSMUST00000184455.7	protein_coding	chr4:22357571-22434088
chr4	22747048	22747334	+	ORR1C1	LTR	ERVL-MaLR	chr4	22747130	22747132	+	ENSMUST00000158184.1,ENSMUSG00000088809.1	Gm24078	ENSMUSG00000088809.1	ENSMUST00000158184.1	miRNA	chr4:22747131-22747233
chr4	23260545	23260905	+	RLTR44B	LTR	ERVK	chr4	23260783	23260785	+	ENSMUST00000131639.1,ENSMUSG00000087098.1	Gm11884	ENSMUSG00000087098.1	ENSMUST00000131639.1	lincRNA	chr4:23260784-23392503
chr4	24430871	24430915	+	(GA)n	Simple_repeat	Simple_repeat	chr4	24430889	24430891	-	ENSMUST00000183964.1,ENSMUSG00000099150.1	Gm27243	ENSMUSG00000099150.1	ENSMUST00000183964.1	lincRNA	chr4:24430370-24430890
chr4	24973299	24973494	-	B3	SINE	B2	chr4	24973418	24973420	+	ENSMUST00000038920.1,ENSMUSG00000040372.2	Gpr63	ENSMUSG00000040372.2	ENSMUST00000038920.1	protein_coding	chr4:24973419-25009233
chr4	25799839	25799907	+	G-rich	Low_complexity	Low_complexity	chr4	25799854	25799856	-	ENSMUST00000149875.1,ENSMUSG00000055373.8	Fut9	ENSMUSG00000055373.8	ENSMUST00000149875.1	protein_coding	chr4:25797703-25799855
chr4	25819673	25819776	-	U6	snRNA	snRNA	chr4	25819772	25819774	-	ENSMUST00000083114.1,ENSMUSG00000065048.1	Gm24042	ENSMUSG00000065048.1	ENSMUST00000083114.1	snRNA	chr4:25819671-25819773
chr4	25861038	25861536	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr4	25861347	25861349	-	ENSMUST00000103789.1,ENSMUSG00000076977.1	Gm26067	ENSMUSG00000076977.1	ENSMUST00000103789.1	miRNA	chr4:25861239-25861348
chr4	25940363	25940447	+	U6	snRNA	snRNA	chr4	25940364	25940366	+	ENSMUST00000157922.1,ENSMUSG00000088547.1	Gm24965	ENSMUSG00000088547.1	ENSMUST00000157922.1	snRNA	chr4:25940365-25940470
chr4	26705188	26705838	+	MERVK26-int	LTR	ERVK	chr4	26705448	26705450	-	ENSMUST00000154459.1,ENSMUSG00000086257.1	4930548K13Rik	ENSMUSG00000086257.1	ENSMUST00000154459.1	lincRNA	chr4:26635820-26705449
chr4	27700670	27700777	+	U6	snRNA	snRNA	chr4	27700670	27700672	+	ENSMUST00000179794.1,ENSMUSG00000095003.1	Gm25173	ENSMUSG00000095003.1	ENSMUST00000179794.1	snRNA	chr4:27700671-27700777
chr4	29067991	29068109	-	MER5A1	DNA	hAT-Charlie	chr4	29068078	29068080	+	ENSMUST00000154813.1,ENSMUSG00000087316.1	Gm11917	ENSMUSG00000087316.1	ENSMUST00000154813.1	lincRNA	chr4:29068079-29088811
chr4	30426787	30433111	-	L1Md_F2	LINE	L1	chr4	30432111	30432113	+	ENSMUST00000152306.1,ENSMUSG00000087180.1	Gm11924	ENSMUSG00000087180.1	ENSMUST00000152306.1	lincRNA	chr4:30432112-30523783
chr4	30664558	30664879	-	MLT1B	LTR	ERVL-MaLR	chr4	30664595	30664597	+	ENSMUST00000128925.1,ENSMUSG00000085522.1	4930556G01Rik	ENSMUSG00000085522.1	ENSMUST00000128925.1	lincRNA	chr4:30664596-30796663
chr4	31174908	31175012	-	U6	snRNA	snRNA	chr4	31175011	31175013	-	ENSMUST00000083119.1,ENSMUSG00000065053.1	Gm25705	ENSMUSG00000065053.1	ENSMUST00000083119.1	snRNA	chr4:31174909-31175012
chr4	31964227	31964259	+	GC_rich	Low_complexity	Low_complexity	chr4	31964256	31964258	+	ENSMUST00000108183.7,ENSMUSG00000028284.13	Map3k7	ENSMUSG00000028284.13	ENSMUST00000108183.7	protein_coding	chr4:31964257-32023467
chr4	31998670	31998741	-	U4	snRNA	snRNA	chr4	31998740	31998742	-	ENSMUST00000122491.1,ENSMUSG00000084440.1	Gm26254	ENSMUSG00000084440.1	ENSMUST00000122491.1	snRNA	chr4:31998624-31998741
chr4	32238750	32238910	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	32238803	32238805	+	ENSMUST00000108180.8,ENSMUSG00000040270.16	Bach2	ENSMUSG00000040270.16	ENSMUST00000108180.8	protein_coding	chr4:32238804-32586104
chr4	32251750	32251780	+	(TGAA)n	Simple_repeat	Simple_repeat	chr4	32251760	32251762	+	ENSMUST00000133451.1,ENSMUSG00000087049.1	Bach2it1	ENSMUSG00000087049.1	ENSMUST00000133451.1	sense_intronic	chr4:32251761-32265835
chr4	32514787	32515018	+	7SK	RNA	RNA	chr4	32514786	32514788	+	ENSMUST00000122662.1,ENSMUSG00000084611.1	Gm24371	ENSMUSG00000084611.1	ENSMUST00000122662.1	misc_RNA	chr4:32514787-32515053
chr4	32574915	32575112	+	B3A	SINE	B2	chr4	32574930	32574932	+	ENSMUST00000125263.1,ENSMUSG00000040270.16	Bach2	ENSMUSG00000040270.16	ENSMUST00000125263.1	protein_coding	chr4:32574931-32579838
chr4	33209203	33209280	+	GC_rich	Low_complexity	Low_complexity	chr4	33209262	33209264	+	ENSMUST00000108159.1,ENSMUSG00000054679.8	Srsf12	ENSMUSG00000054679.8	ENSMUST00000108159.1	protein_coding	chr4:33209263-33231293
chr4	33320805	33322516	-	Lx7	LINE	L1	chr4	33322235	33322237	+	ENSMUST00000130138.1,ENSMUSG00000028274.17	Rngtt	ENSMUSG00000028274.17	ENSMUST00000130138.1	protein_coding	chr4:33322236-33326038
chr4	33628727	33629211	-	MT2_Mm	LTR	ERVL	chr4	33628960	33628962	-	ENSMUST00000180209.1,ENSMUSG00000096184.1	Gm23304	ENSMUSG00000096184.1	ENSMUST00000180209.1	miRNA	chr4:33628841-33628961
chr4	34086126	34086233	+	U6	snRNA	snRNA	chr4	34086125	34086127	+	ENSMUST00000157216.1,ENSMUSG00000087841.1	Gm25623	ENSMUSG00000087841.1	ENSMUST00000157216.1	snRNA	chr4:34086126-34086233
chr4	34130398	34131110	-	Lx7	LINE	L1	chr4	34130853	34130855	+	ENSMUST00000152086.1,ENSMUSG00000087602.1	Gm12753	ENSMUSG00000087602.1	ENSMUST00000152086.1	lincRNA	chr4:34130854-34134800
chr4	34550905	34551165	-	MMERVK9C_I-int	LTR	ERVK	chr4	34550936	34550938	+	ENSMUST00000084299.5,ENSMUSG00000028291.7	Akirin2	ENSMUSG00000028291.7	ENSMUST00000084299.5	protein_coding	chr4:34550937-34566908
chr4	34550905	34551165	-	MMERVK9C_I-int	LTR	ERVK	chr4	34550950	34550952	+	ENSMUST00000132230.1,ENSMUSG00000028291.7	Akirin2	ENSMUSG00000028291.7	ENSMUST00000132230.1	protein_coding	chr4:34550951-34562769
chr4	34683878	34684105	+	7SK	RNA	RNA	chr4	34683878	34683880	+	ENSMUST00000157713.1,ENSMUSG00000088338.1	Gm22849	ENSMUSG00000088338.1	ENSMUST00000157713.1	misc_RNA	chr4:34683879-34684185
chr4	35225826	35225924	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr4	35225833	35225835	-	ENSMUST00000108126.7,ENSMUSG00000028300.14	C9orf72	ENSMUSG00000028300.14	ENSMUST00000108126.7	protein_coding	chr4:35191287-35225834
chr4	35225826	35225924	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr4	35225879	35225881	-	ENSMUST00000108127.3,ENSMUSG00000028300.14	C9orf72	ENSMUSG00000028300.14	ENSMUST00000108127.3	protein_coding	chr4:35191287-35225880
chr4	35225826	35225924	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr4	35225896	35225898	+	ENSMUST00000127015.1,ENSMUSG00000084828.1	Gm12367	ENSMUSG00000084828.1	ENSMUST00000127015.1	processed_transcript	chr4:35225897-35235802
chr4	35225826	35225924	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr4	35225914	35225916	+	ENSMUST00000149677.1,ENSMUSG00000084828.1	Gm12367	ENSMUSG00000084828.1	ENSMUST00000149677.1	processed_transcript	chr4:35225915-35235900
chr4	36756047	36756138	+	U6	snRNA	snRNA	chr4	36756047	36756049	+	ENSMUST00000157218.1,ENSMUSG00000087843.1	Gm23314	ENSMUSG00000087843.1	ENSMUST00000157218.1	snRNA	chr4:36756048-36756154
chr4	36951722	36951804	+	(CACG)n	Simple_repeat	Simple_repeat	chr4	36951743	36951745	-	ENSMUST00000145615.1,ENSMUSG00000045083.14	Lingo2	ENSMUSG00000045083.14	ENSMUST00000145615.1	protein_coding	chr4:36715820-36951744
chr4	36951722	36951804	+	(CACG)n	Simple_repeat	Simple_repeat	chr4	36951746	36951748	-	ENSMUST00000125128.1,ENSMUSG00000045083.14	Lingo2	ENSMUSG00000045083.14	ENSMUST00000125128.1	protein_coding	chr4:36951100-36951747
chr4	37249360	37249642	+	ORR1A4	LTR	ERVL-MaLR	chr4	37249402	37249404	+	ENSMUST00000147108.1,ENSMUSG00000086026.1	Gm12374	ENSMUSG00000086026.1	ENSMUST00000147108.1	lincRNA	chr4:37249403-37332515
chr4	38855462	38856032	+	RLTR6B_Mm	LTR	ERV1	chr4	38855482	38855484	-	ENSMUST00000126314.1,ENSMUSG00000085632.1	Gm12381	ENSMUSG00000085632.1	ENSMUST00000126314.1	lincRNA	chr4:38571667-38855483
chr4	39259630	39259794	-	U1	snRNA	snRNA	chr4	39259793	39259795	-	ENSMUST00000083410.1,ENSMUSG00000065344.1	Gm25581	ENSMUSG00000065344.1	ENSMUST00000083410.1	snRNA	chr4:39259631-39259794
chr4	39259794	39259836	-	L1_Mur2	LINE	L1	chr4	39259793	39259795	-	ENSMUST00000083410.1,ENSMUSG00000065344.1	Gm25581	ENSMUSG00000065344.1	ENSMUST00000083410.1	snRNA	chr4:39259631-39259794
chr4	39263478	39263547	+	L1MA4A	LINE	L1	chr4	39263543	39263545	+	ENSMUST00000120628.1,ENSMUSG00000082238.1	Gm12383	ENSMUSG00000082238.1	ENSMUST00000120628.1	processed_pseudogene	chr4:39263544-39264303
chr4	39450293	39450368	+	C-rich	Low_complexity	Low_complexity	chr4	39450294	39450296	+	ENSMUST00000029955.4,ENSMUSG00000028287.4	1700009N14Rik	ENSMUSG00000028287.4	ENSMUST00000029955.4	protein_coding	chr4:39450295-39451776
chr4	39865686	39865732	+	U2	snRNA	snRNA	chr4	39865686	39865688	+	ENSMUST00000157714.1,ENSMUSG00000088339.1	Gm22850	ENSMUSG00000088339.1	ENSMUST00000157714.1	snRNA	chr4:39865687-39865768
chr4	39981280	39981627	-	RLTR25B	LTR	ERVK	chr4	39981557	39981559	-	ENSMUST00000157901.1,ENSMUSG00000088526.1	Gm26087	ENSMUSG00000088526.1	ENSMUST00000157901.1	snRNA	chr4:39981497-39981558
chr4	40313033	40313321	-	ORR1E	LTR	ERVL-MaLR	chr4	40313231	40313233	+	ENSMUST00000144039.1,ENSMUSG00000087137.1	4930509K18Rik	ENSMUSG00000087137.1	ENSMUST00000144039.1	lincRNA	chr4:40313232-40317719
chr4	40459020	40459164	-	RMER19B2	LTR	ERVK	chr4	40459032	40459034	-	ENSMUST00000158960.1,ENSMUSG00000089585.1	Gm23338	ENSMUSG00000089585.1	ENSMUST00000158960.1	snoRNA	chr4:40458939-40459033
chr4	40694161	40694583	+	MLTR11B	LTR	ERVK	chr4	40694506	40694508	-	ENSMUST00000128810.1,ENSMUSG00000028411.15	Aptx	ENSMUSG00000028411.15	ENSMUST00000128810.1	protein_coding	chr4:40691003-40694507
chr4	41002343	41002572	-	L1MB5	LINE	L1	chr4	41002509	41002511	+	ENSMUST00000143798.1,ENSMUSG00000028423.15	Nfx1	ENSMUSG00000028423.15	ENSMUST00000143798.1	protein_coding	chr4:41002510-41012169
chr4	41021357	41021589	+	B4	SINE	B4	chr4	41021365	41021367	+	ENSMUST00000136717.1,ENSMUSG00000028423.15	Nfx1	ENSMUSG00000028423.15	ENSMUST00000136717.1	protein_coding	chr4:41021366-41025178
chr4	41040904	41041059	+	MER102b	DNA	hAT-Charlie	chr4	41040966	41040968	-	ENSMUST00000144201.7,ENSMUSG00000028427.13	Aqp7	ENSMUSG00000028427.13	ENSMUST00000144201.7	protein_coding	chr4:41034893-41040967
chr4	41050219	41050325	+	U6	snRNA	snRNA	chr4	41050219	41050221	+	ENSMUST00000157529.1,ENSMUSG00000088154.1	Gm25637	ENSMUSG00000088154.1	ENSMUST00000157529.1	snRNA	chr4:41050220-41050326
chr4	41122671	41122792	+	PB1D7	SINE	Alu	chr4	41122753	41122755	-	ENSMUST00000135059.1,ENSMUSG00000028430.14	Nol6	ENSMUSG00000028430.14	ENSMUST00000135059.1	protein_coding	chr4:41121879-41122754
chr4	41172741	41172844	-	U6	snRNA	snRNA	chr4	41172843	41172845	-	ENSMUST00000157105.1,ENSMUSG00000087730.1	Gm24650	ENSMUSG00000087730.1	ENSMUST00000157105.1	snRNA	chr4:41172742-41172844
chr4	41182808	41182948	-	B1_Mur1	SINE	Alu	chr4	41182919	41182921	+	ENSMUST00000129874.1,ENSMUSG00000036241.3	Ube2r2	ENSMUSG00000036241.3	ENSMUST00000129874.1	protein_coding	chr4:41182920-41190823
chr4	41188857	41188999	-	RSINE1	SINE	B4	chr4	41188887	41188889	+	ENSMUST00000123642.1,ENSMUSG00000036241.3	Ube2r2	ENSMUSG00000036241.3	ENSMUST00000123642.1	protein_coding	chr4:41188888-41191036
chr4	41303075	41303166	-	B1_Mur1	SINE	Alu	chr4	41303157	41303159	+	ENSMUST00000083939.1,ENSMUSG00000065873.1	n-R5s183	ENSMUSG00000065873.1	ENSMUST00000083939.1	rRNA	chr4:41303158-41303272
chr4	41312090	41312198	-	U6	snRNA	snRNA	chr4	41312197	41312199	-	ENSMUST00000157313.1,ENSMUSG00000087938.1	Gm26049	ENSMUSG00000087938.1	ENSMUST00000157313.1	snRNA	chr4:41312091-41312198
chr4	41371181	41371324	-	B1_Mur4	SINE	Alu	chr4	41371247	41371249	+	ENSMUST00000154529.1,ENSMUSG00000028437.14	Ubap1	ENSMUSG00000028437.14	ENSMUST00000154529.1	protein_coding	chr4:41371248-41379416
chr4	41464874	41464903	+	GC_rich	Low_complexity	Low_complexity	chr4	41464886	41464888	-	ENSMUST00000131532.1,ENSMUSG00000028438.16	Kif24	ENSMUSG00000028438.16	ENSMUST00000131532.1	protein_coding	chr4:41454390-41464887
chr4	41517414	41517518	-	MLT1G1	LTR	ERVL-MaLR	chr4	41517436	41517438	+	ENSMUST00000151164.1,ENSMUSG00000036162.3	Fam219aos	ENSMUSG00000036162.3	ENSMUST00000151164.1	antisense	chr4:41517437-41518929
chr4	41633227	41633657	+	L1MB8	LINE	L1	chr4	41633347	41633349	+	ENSMUST00000119127.1,ENSMUSG00000061322.15	Dnaic1	ENSMUSG00000061322.15	ENSMUST00000119127.1	protein_coding	chr4:41633348-41638158
chr4	41640242	41640324	+	(GGCTG)n	Simple_repeat	Simple_repeat	chr4	41640323	41640325	-	ENSMUST00000127306.1,ENSMUSG00000028445.7	Enho	ENSMUSG00000028445.7	ENSMUST00000127306.1	protein_coding	chr4:41638144-41640324
chr4	41695437	41695467	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	41695441	41695443	-	ENSMUST00000102961.9,ENSMUSG00000028444.17	Cntfr	ENSMUSG00000028444.17	ENSMUST00000102961.9	protein_coding	chr4:41657498-41695442
chr4	41695437	41695467	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	41695444	41695446	-	ENSMUST00000064443.12,ENSMUSG00000028444.17	Cntfr	ENSMUSG00000028444.17	ENSMUST00000064443.12	protein_coding	chr4:41669674-41695445
chr4	41697082	41697137	+	(CA)n	Simple_repeat	Simple_repeat	chr4	41697088	41697090	-	ENSMUST00000084701.11,ENSMUSG00000028444.17	Cntfr	ENSMUSG00000028444.17	ENSMUST00000084701.11	protein_coding	chr4:41669674-41697089
chr4	41755060	41755294	+	Lx8	LINE	L1	chr4	41755227	41755229	+	ENSMUST00000084695.10,ENSMUSG00000036073.17	Galt	ENSMUSG00000036073.17	ENSMUST00000084695.10	protein_coding	chr4:41755228-41758695
chr4	41755060	41755294	+	Lx8	LINE	L1	chr4	41755227	41755229	+	ENSMUST00000108038.1,ENSMUSG00000036073.17	Galt	ENSMUSG00000036073.17	ENSMUST00000108038.1	protein_coding	chr4:41755228-41758695
chr4	41755060	41755294	+	Lx8	LINE	L1	chr4	41755252	41755254	+	ENSMUST00000135734.7,ENSMUSG00000036073.17	Galt	ENSMUSG00000036073.17	ENSMUST00000135734.7	protein_coding	chr4:41755253-41756447
chr4	41755060	41755294	+	Lx8	LINE	L1	chr4	41755252	41755254	+	ENSMUST00000151490.7,ENSMUSG00000036073.17	Galt	ENSMUSG00000036073.17	ENSMUST00000151490.7	protein_coding	chr4:41755253-41757549
chr4	41770208	41770244	+	CT-rich	Low_complexity	Low_complexity	chr4	41770223	41770225	-	ENSMUST00000108033.7,ENSMUSG00000073888.13	Ccl27a	ENSMUSG00000073888.13	ENSMUST00000108033.7	protein_coding	chr4:41769467-41770224
chr4	41770208	41770244	+	CT-rich	Low_complexity	Low_complexity	chr4	41770211	41770213	-	ENSMUST00000074387.3,ENSMUSG00000073888.13	Ccl27a	ENSMUSG00000073888.13	ENSMUST00000074387.3	protein_coding	chr4:41769478-41770212
chr4	42158071	42158107	+	GA-rich	Low_complexity	Low_complexity	chr4	42158091	42158093	+	ENSMUST00000098122.2,ENSMUSG00000073877.10	Gm13306	ENSMUSG00000073877.10	ENSMUST00000098122.2	protein_coding	chr4:42158092-42158839
chr4	42206860	42207067	-	B3	SINE	B2	chr4	42206997	42206999	+	ENSMUST00000169242.1,ENSMUSG00000091542.1	Gm17167	ENSMUSG00000091542.1	ENSMUST00000169242.1	processed_transcript	chr4:42206998-42235313
chr4	42655230	42655266	+	GA-rich	Low_complexity	Low_complexity	chr4	42655250	42655252	+	ENSMUST00000177785.1,ENSMUSG00000096826.1	Ccl27b	ENSMUSG00000096826.1	ENSMUST00000177785.1	protein_coding	chr4:42655251-42656005
chr4	42736429	42736601	+	B3A	SINE	B2	chr4	42736592	42736594	+	ENSMUST00000144765.1,ENSMUSG00000085910.1	Gm12395	ENSMUSG00000085910.1	ENSMUST00000144765.1	antisense	chr4:42736593-42738094
chr4	42856239	42857002	-	MYSERV6-int	LTR	ERVK	chr4	42856770	42856772	-	ENSMUST00000107981.1,ENSMUSG00000078722.2	Gm12394	ENSMUSG00000078722.2	ENSMUST00000107981.1	protein_coding	chr4:42781928-42856771
chr4	42969599	42969744	+	B1_Mus1	SINE	Alu	chr4	42969603	42969605	+	ENSMUST00000189414.1,ENSMUSG00000028451.12	1700022I11Rik	ENSMUSG00000028451.12	ENSMUST00000189414.1	protein_coding	chr4:42969604-42971332
chr4	42969599	42969744	+	B1_Mus1	SINE	Alu	chr4	42969630	42969632	+	ENSMUST00000185904.1,ENSMUSG00000028451.12	1700022I11Rik	ENSMUSG00000028451.12	ENSMUST00000185904.1	protein_coding	chr4:42969631-42971298
chr4	42985756	42985895	+	B1_Mur4	SINE	Alu	chr4	42985820	42985822	-	ENSMUST00000154541.1,ENSMUSG00000028452.7	Vcp	ENSMUSG00000028452.7	ENSMUST00000154541.1	protein_coding	chr4:42984366-42985821
chr4	43230083	43230114	+	(T)n	Simple_repeat	Simple_repeat	chr4	43230097	43230099	+	ENSMUST00000127597.1,ENSMUSG00000028456.18	Unc13b	ENSMUSG00000028456.18	ENSMUST00000127597.1	protein_coding	chr4:43230098-43232957
chr4	43499060	43499228	-	MIRc	SINE	MIR	chr4	43499114	43499116	-	ENSMUST00000154905.7,ENSMUSG00000051517.14	Arhgef39	ENSMUSG00000051517.14	ENSMUST00000154905.7	protein_coding	chr4:43497220-43499115
chr4	43499060	43499228	-	MIRc	SINE	MIR	chr4	43499074	43499076	-	ENSMUST00000147124.7,ENSMUSG00000051517.14	Arhgef39	ENSMUSG00000051517.14	ENSMUST00000147124.7	protein_coding	chr4:43497261-43499075
chr4	43507839	43507951	-	PB1D10	SINE	Alu	chr4	43507876	43507878	+	ENSMUST00000128232.1,ENSMUSG00000028463.14	Car9	ENSMUSG00000028463.14	ENSMUST00000128232.1	protein_coding	chr4:43507877-43508974
chr4	43655675	43655797	-	B1F	SINE	Alu	chr4	43655742	43655744	-	ENSMUST00000155985.1,ENSMUSG00000028470.10	Hint2	ENSMUSG00000028470.10	ENSMUST00000155985.1	protein_coding	chr4:43654674-43655743
chr4	43655705	43655815	-	B4	SINE	B4	chr4	43655742	43655744	-	ENSMUST00000155985.1,ENSMUSG00000028470.10	Hint2	ENSMUSG00000028470.10	ENSMUST00000155985.1	protein_coding	chr4:43654674-43655743
chr4	43669283	43669304	+	GC_rich	Low_complexity	Low_complexity	chr4	43669286	43669288	+	ENSMUST00000107864.7,ENSMUSG00000078716.10	Tmem8b	ENSMUSG00000078716.10	ENSMUST00000107864.7	protein_coding	chr4:43669287-43692668
chr4	43669485	43669663	+	C-rich	Low_complexity	Low_complexity	chr4	43669505	43669507	+	ENSMUST00000107866.8,ENSMUSG00000078716.10	Tmem8b	ENSMUSG00000078716.10	ENSMUST00000107866.8	protein_coding	chr4:43669506-43692668
chr4	43669485	43669663	+	C-rich	Low_complexity	Low_complexity	chr4	43669555	43669557	+	ENSMUST00000134869.7,ENSMUSG00000078716.10	Tmem8b	ENSMUSG00000078716.10	ENSMUST00000134869.7	protein_coding	chr4:43669556-43686413
chr4	43692685	43692774	+	5S	rRNA	rRNA	chr4	43692685	43692687	+	ENSMUST00000158322.1,ENSMUSG00000088947.1	Gm23257	ENSMUSG00000088947.1	ENSMUST00000158322.1	rRNA	chr4:43692686-43692817
chr4	44063140	44063260	+	B4	SINE	B4	chr4	44063172	44063174	-	ENSMUST00000173976.1,ENSMUSG00000028479.18	Gne	ENSMUSG00000028479.18	ENSMUST00000173976.1	protein_coding	chr4:44055305-44063173
chr4	44063166	44063285	+	B1F	SINE	Alu	chr4	44063172	44063174	-	ENSMUST00000173976.1,ENSMUSG00000028479.18	Gne	ENSMUSG00000028479.18	ENSMUST00000173976.1	protein_coding	chr4:44055305-44063173
chr4	44081297	44081400	-	U1	snRNA	snRNA	chr4	44081399	44081401	-	ENSMUST00000157907.1,ENSMUSG00000088532.1	Gm22706	ENSMUSG00000088532.1	ENSMUST00000157907.1	snRNA	chr4:44081289-44081400
chr4	44092604	44092647	+	(CA)n	Simple_repeat	Simple_repeat	chr4	44092631	44092633	+	ENSMUST00000146576.1,ENSMUSG00000087326.1	Gm12503	ENSMUSG00000087326.1	ENSMUST00000146576.1	processed_transcript	chr4:44092632-44109311
chr4	44120508	44121941	-	L1_Mur3	LINE	L1	chr4	44121892	44121894	+	ENSMUST00000120860.1,ENSMUSG00000084274.2	Gm12504	ENSMUSG00000084274.2	ENSMUST00000120860.1	transcribed_processed_pseudogene	chr4:44121893-44124123
chr4	44139390	44139773	-	MTA_Mm	LTR	ERVL-MaLR	chr4	44139585	44139587	-	ENSMUST00000145378.1,ENSMUSG00000035696.15	Rnf38	ENSMUSG00000035696.15	ENSMUST00000145378.1	protein_coding	chr4:44129508-44139586
chr4	44139390	44139773	-	MTA_Mm	LTR	ERVL-MaLR	chr4	44139665	44139667	-	ENSMUST00000152216.1,ENSMUSG00000035696.15	Rnf38	ENSMUSG00000035696.15	ENSMUST00000152216.1	protein_coding	chr4:44138466-44139666
chr4	44167483	44167512	+	GC_rich	Low_complexity	Low_complexity	chr4	44167491	44167493	-	ENSMUST00000147302.1,ENSMUSG00000035696.15	Rnf38	ENSMUSG00000035696.15	ENSMUST00000147302.1	protein_coding	chr4:44158973-44167492
chr4	44167998	44168020	+	GC_rich	Low_complexity	Low_complexity	chr4	44168004	44168006	-	ENSMUST00000143337.1,ENSMUSG00000035696.15	Rnf38	ENSMUSG00000035696.15	ENSMUST00000143337.1	protein_coding	chr4:44142393-44168005
chr4	44228281	44228407	-	B1_Mur4	SINE	Alu	chr4	44228311	44228313	-	ENSMUST00000123844.7,ENSMUSG00000035696.15	Rnf38	ENSMUSG00000035696.15	ENSMUST00000123844.7	protein_coding	chr4:44149114-44228312
chr4	44233739	44233796	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	44233788	44233790	-	ENSMUST00000153116.1,ENSMUSG00000035696.15	Rnf38	ENSMUSG00000035696.15	ENSMUST00000153116.1	protein_coding	chr4:44152434-44233789
chr4	44302579	44302714	-	B1_Mus1	SINE	Alu	chr4	44302666	44302668	+	ENSMUST00000137703.7,ENSMUSG00000035683.13	Melk	ENSMUSG00000035683.13	ENSMUST00000137703.7	protein_coding	chr4:44302667-44325693
chr4	44607492	44607650	-	Charlie8	DNA	hAT-Charlie	chr4	44607567	44607569	-	ENSMUST00000175020.1,ENSMUSG00000092761.1	Mir5120	ENSMUSG00000092761.1	ENSMUST00000175020.1	miRNA	chr4:44607491-44607568
chr4	44664405	44664476	+	GC_rich	Low_complexity	Low_complexity	chr4	44664414	44664416	+	ENSMUST00000140826.1,ENSMUSG00000086211.1	Gm12462	ENSMUSG00000086211.1	ENSMUST00000140826.1	antisense	chr4:44664415-44685347
chr4	44710470	44710625	+	(TTTC)n	Simple_repeat	Simple_repeat	chr4	44710486	44710488	-	ENSMUST00000014174.13,ENSMUSG00000014030.15	Pax5	ENSMUSG00000014030.15	ENSMUST00000014174.13	protein_coding	chr4:44524757-44710487
chr4	44865288	44865433	-	B1_Mus2	SINE	Alu	chr4	44865306	44865308	+	ENSMUST00000175591.1,ENSMUSG00000094842.1	Gm22639	ENSMUSG00000094842.1	ENSMUST00000175591.1	miRNA	chr4:44865307-44865431
chr4	44922911	44923173	-	L2	LINE	L2	chr4	44923117	44923119	+	ENSMUST00000147272.7,ENSMUSG00000035649.17	Zcchc7	ENSMUSG00000035649.17	ENSMUST00000147272.7	protein_coding	chr4:44923118-44932215
chr4	44981339	44981405	+	C-rich	Low_complexity	Low_complexity	chr4	44981394	44981396	+	ENSMUST00000045078.12,ENSMUSG00000035637.14	Grhpr	ENSMUSG00000035637.14	ENSMUST00000045078.12	protein_coding	chr4:44981395-44990734
chr4	44981339	44981405	+	C-rich	Low_complexity	Low_complexity	chr4	44981402	44981404	+	ENSMUST00000128973.1,ENSMUSG00000035637.14	Grhpr	ENSMUSG00000035637.14	ENSMUST00000128973.1	protein_coding	chr4:44981403-44983943
chr4	45011606	45011690	+	L2b	LINE	L2	chr4	45011686	45011688	+	ENSMUST00000186030.1,ENSMUSG00000070997.4	1700055D18Rik	ENSMUSG00000070997.4	ENSMUST00000186030.1	antisense	chr4:45011687-45015406
chr4	45012767	45012863	-	L2	LINE	L2	chr4	45012829	45012831	+	ENSMUST00000095105.1,ENSMUSG00000070997.4	1700055D18Rik	ENSMUSG00000070997.4	ENSMUST00000095105.1	antisense	chr4:45012830-45014399
chr4	45029103	45029247	-	B4A	SINE	B4	chr4	45029143	45029145	+	ENSMUST00000150663.1,ENSMUSG00000028318.14	Polr1e	ENSMUSG00000028318.14	ENSMUST00000150663.1	protein_coding	chr4:45029144-45031385
chr4	45314037	45314180	-	Lx5b	LINE	L1	chr4	45314097	45314099	+	ENSMUST00000145756.1,ENSMUSG00000035601.9	Trmt10b	ENSMUSG00000035601.9	ENSMUST00000145756.1	protein_coding	chr4:45314098-45315048
chr4	45396990	45397137	+	B1_Mus1	SINE	Alu	chr4	45397117	45397119	-	ENSMUST00000175444.1,ENSMUSG00000093185.1	Gm25692	ENSMUSG00000093185.1	ENSMUST00000175444.1	miRNA	chr4:45396994-45397118
chr4	45548457	45548773	+	ORR1A2	LTR	ERVL-MaLR	chr4	45548742	45548744	+	ENSMUST00000083388.1,ENSMUSG00000065322.1	Gm22055	ENSMUSG00000065322.1	ENSMUST00000083388.1	snRNA	chr4:45548743-45548849
chr4	45548742	45548844	+	U6	snRNA	snRNA	chr4	45548742	45548744	+	ENSMUST00000083388.1,ENSMUSG00000065322.1	Gm22055	ENSMUSG00000065322.1	ENSMUST00000083388.1	snRNA	chr4:45548743-45548849
chr4	45683525	45683678	+	Zaphod2	DNA	hAT-Tip100	chr4	45683588	45683590	+	ENSMUST00000123741.1,ENSMUSG00000073860.12	Gm829	ENSMUSG00000073860.12	ENSMUST00000123741.1	lincRNA	chr4:45683589-45692938
chr4	45683525	45683678	+	Zaphod2	DNA	hAT-Tip100	chr4	45683588	45683590	+	ENSMUST00000146622.7,ENSMUSG00000073860.12	Gm829	ENSMUSG00000073860.12	ENSMUST00000146622.7	lincRNA	chr4:45683589-45723338
chr4	45715026	45715253	-	ORR1B2	LTR	ERVL-MaLR	chr4	45715168	45715170	+	ENSMUST00000124989.1,ENSMUSG00000085305.1	Gm12410	ENSMUSG00000085305.1	ENSMUST00000124989.1	lincRNA	chr4:45715169-45716421
chr4	45873954	45874255	-	MTE2a	LTR	ERVL-MaLR	chr4	45874210	45874212	+	ENSMUST00000165478.1,ENSMUSG00000028327.14	Stra6l	ENSMUSG00000028327.14	ENSMUST00000165478.1	protein_coding	chr4:45874211-45886618
chr4	45965176	45965539	+	MLT1A0	LTR	ERVL-MaLR	chr4	45965333	45965335	+	ENSMUST00000107777.8,ENSMUSG00000035517.17	Tdrd7	ENSMUSG00000035517.17	ENSMUST00000107777.8	protein_coding	chr4:45965334-46034761
chr4	46082580	46082904	-	MLT1A	LTR	ERVL-MaLR	chr4	46082846	46082848	+	ENSMUST00000136553.1,ENSMUSG00000028328.13	Tmod1	ENSMUSG00000028328.13	ENSMUST00000136553.1	protein_coding	chr4:46082847-46090881
chr4	46118179	46118409	+	7SK	RNA	RNA	chr4	46118179	46118181	+	ENSMUST00000157444.1,ENSMUSG00000088069.1	Gm23250	ENSMUSG00000088069.1	ENSMUST00000157444.1	misc_RNA	chr4:46118180-46118446
chr4	46135717	46135856	-	L2a	LINE	L2	chr4	46135777	46135779	-	ENSMUST00000129929.1,ENSMUSG00000035495.15	Tstd2	ENSMUSG00000035495.15	ENSMUST00000129929.1	protein_coding	chr4:46132146-46135778
chr4	46186475	46186772	-	ORR1B1	LTR	ERVL-MaLR	chr4	46186593	46186595	-	ENSMUST00000130051.1,ENSMUSG00000028329.13	Xpa	ENSMUSG00000028329.13	ENSMUST00000130051.1	protein_coding	chr4:46184412-46186594
chr4	47057286	47057375	+	GC_rich	Low_complexity	Low_complexity	chr4	47057305	47057307	-	ENSMUST00000107747.7,ENSMUSG00000066191.12	Anks6	ENSMUSG00000066191.12	ENSMUST00000107747.7	protein_coding	chr4:47015669-47057306
chr4	47057286	47057375	+	GC_rich	Low_complexity	Low_complexity	chr4	47057305	47057307	-	ENSMUST00000084616.2,ENSMUSG00000066191.12	Anks6	ENSMUSG00000066191.12	ENSMUST00000084616.2	protein_coding	chr4:47015689-47057306
chr4	47091872	47091909	+	GC_rich	Low_complexity	Low_complexity	chr4	47091908	47091910	+	ENSMUST00000045041.11,ENSMUSG00000039774.12	Galnt12	ENSMUSG00000039774.12	ENSMUST00000045041.11	protein_coding	chr4:47091909-47123070
chr4	47208147	47208240	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	47208160	47208162	+	ENSMUST00000082303.12,ENSMUSG00000028339.17	Col15a1	ENSMUSG00000028339.17	ENSMUST00000082303.12	protein_coding	chr4:47208161-47313163
chr4	47208147	47208240	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	47208160	47208162	+	ENSMUST00000102917.10,ENSMUSG00000028339.17	Col15a1	ENSMUSG00000028339.17	ENSMUST00000102917.10	protein_coding	chr4:47208161-47313167
chr4	47353197	47353252	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	47353221	47353223	+	ENSMUST00000007757.14,ENSMUSG00000007613.15	Tgfbr1	ENSMUSG00000007613.15	ENSMUST00000007757.14	protein_coding	chr4:47353222-47414931
chr4	47353540	47353600	+	G-rich	Low_complexity	Low_complexity	chr4	47353597	47353599	+	ENSMUST00000123962.1,ENSMUSG00000007613.15	Tgfbr1	ENSMUSG00000007613.15	ENSMUST00000123962.1	protein_coding	chr4:47353598-47361313
chr4	47385781	47390562	+	L1_Mus3	LINE	L1	chr4	47386215	47386217	+	ENSMUST00000107725.2,ENSMUSG00000007613.15	Tgfbr1	ENSMUSG00000007613.15	ENSMUST00000107725.2	protein_coding	chr4:47386216-47411035
chr4	47470619	47470785	+	ORR1F	LTR	ERVL-MaLR	chr4	47470769	47470771	-	ENSMUST00000136912.1,ENSMUSG00000039740.6	Alg2	ENSMUSG00000039740.6	ENSMUST00000136912.1	protein_coding	chr4:47465067-47470770
chr4	47927243	47927944	+	MERVL_2A-int	LTR	ERVL	chr4	47927364	47927366	-	ENSMUST00000195786.1,ENSMUSG00000102450.1	Gm38343	ENSMUSG00000102450.1	ENSMUST00000195786.1	TEC	chr4:47827224-47927365
chr4	47996334	47996470	+	B1_Mur1	SINE	Alu	chr4	47996455	47996457	+	ENSMUST00000141580.1,ENSMUSG00000085660.1	Gm12434	ENSMUSG00000085660.1	ENSMUST00000141580.1	lincRNA	chr4:47996456-47998261
chr4	48212410	48213692	+	Lx9	LINE	L1	chr4	48213214	48213216	-	ENSMUST00000157219.1,ENSMUSG00000087844.1	Mir1958	ENSMUSG00000087844.1	ENSMUST00000157219.1	miRNA	chr4:48213119-48213215
chr4	48540504	48540563	+	GC_rich	Low_complexity	Low_complexity	chr4	48540545	48540547	+	ENSMUST00000146240.1,ENSMUSG00000039693.11	Msantd3	ENSMUSG00000039693.11	ENSMUST00000146240.1	protein_coding	chr4:48540546-48552553
chr4	48898018	48898661	+	RMER1A	Other	Other	chr4	48898592	48898594	+	ENSMUST00000131099.1,ENSMUSG00000084787.1	Gm12436	ENSMUSG00000084787.1	ENSMUST00000131099.1	lincRNA	chr4:48898593-48963237
chr4	49059423	49059457	+	(CA)n	Simple_repeat	Simple_repeat	chr4	49059455	49059457	+	ENSMUST00000151692.1,ENSMUSG00000063446.4	Plppr1	ENSMUSG00000063446.4	ENSMUST00000151692.1	protein_coding	chr4:49059456-49302269
chr4	49289297	49289403	+	U6	snRNA	snRNA	chr4	49289297	49289299	+	ENSMUST00000082848.1,ENSMUSG00000064782.1	Gm22685	ENSMUSG00000064782.1	ENSMUST00000082848.1	snRNA	chr4:49289298-49289403
chr4	49474306	49474410	+	U6	snRNA	snRNA	chr4	49474306	49474308	+	ENSMUST00000122530.1,ENSMUSG00000084479.1	Gm26424	ENSMUSG00000084479.1	ENSMUST00000122530.1	snRNA	chr4:49474307-49474410
chr4	49506218	49506686	-	MER76	LTR	ERVL	chr4	49506556	49506558	-	ENSMUST00000043056.8,ENSMUSG00000039653.9	Baat	ENSMUSG00000039653.9	ENSMUST00000043056.8	protein_coding	chr4:49489422-49506557
chr4	49593879	49594185	-	MER2	DNA	TcMar-Tigger	chr4	49593889	49593891	-	ENSMUST00000151542.1,ENSMUSG00000039611.2	Tmem246	ENSMUSG00000039611.2	ENSMUST00000151542.1	protein_coding	chr4:49587052-49593890
chr4	51189261	51190107	+	L1Md_F2	LINE	L1	chr4	51190106	51190108	+	ENSMUST00000117147.1,ENSMUSG00000084116.1	Gm12460	ENSMUSG00000084116.1	ENSMUST00000117147.1	processed_pseudogene	chr4:51190107-51190463
chr4	51812482	51812647	-	U1	snRNA	snRNA	chr4	51812646	51812648	-	ENSMUST00000082989.1,ENSMUSG00000064923.1	Gm22042	ENSMUSG00000064923.1	ENSMUST00000082989.1	snRNA	chr4:51812483-51812647
chr4	52596050	52596278	-	Lx10	LINE	L1	chr4	52596273	52596275	+	ENSMUST00000029995.5,ENSMUSG00000028314.6	Toporsl	ENSMUSG00000028314.6	ENSMUST00000029995.5	protein_coding	chr4:52596274-52612430
chr4	52813761	52814840	+	Lx9	LINE	L1	chr4	52814603	52814605	+	ENSMUST00000135738.1,ENSMUSG00000089717.2	Olfr275	ENSMUSG00000089717.2	ENSMUST00000135738.1	protein_coding	chr4:52814604-52828269
chr4	52843033	52843854	+	Lx3C	LINE	L1	chr4	52843045	52843047	-	ENSMUST00000216601.1,ENSMUSG00000110940.1	Olfr274-ps1	ENSMUSG00000110940.1	ENSMUST00000216601.1	unprocessed_pseudogene	chr4:52842198-52843046
chr4	52964511	52964679	+	(CACAC)n	Simple_repeat	Simple_repeat	chr4	52964546	52964548	+	ENSMUST00000215010.1,ENSMUSG00000070983.3	Olfr270	ENSMUSG00000070983.3	ENSMUST00000215010.1	protein_coding	chr4:52964547-52972474
chr4	52964511	52964679	+	(CACAC)n	Simple_repeat	Simple_repeat	chr4	52964563	52964565	+	ENSMUST00000215127.1,ENSMUSG00000070983.3	Olfr270	ENSMUSG00000070983.3	ENSMUST00000215127.1	protein_coding	chr4:52964564-52972474
chr4	53020884	53021050	+	Lx9	LINE	L1	chr4	53020975	53020977	+	ENSMUST00000132678.1,ENSMUSG00000015247.10	Nipsnap3b	ENSMUSG00000015247.10	ENSMUST00000132678.1	protein_coding	chr4:53020976-53021505
chr4	53270219	53270358	-	ID_B1	SINE	B4	chr4	53270231	53270233	-	ENSMUST00000123127.2,ENSMUSG00000086712.2	AI427809	ENSMUSG00000086712.2	ENSMUST00000123127.2	lincRNA	chr4:53261356-53270232
chr4	53403772	53404259	-	IAPLTR2_Mm	LTR	ERVK	chr4	53404029	53404031	-	ENSMUST00000154377.1,ENSMUSG00000086267.1	Gm12496	ENSMUSG00000086267.1	ENSMUST00000154377.1	lincRNA	chr4:53401948-53404030
chr4	53631691	53631723	+	(CCCGA)n	Simple_repeat	Simple_repeat	chr4	53631715	53631717	+	ENSMUST00000129648.2,ENSMUSG00000054752.16	Fsd1l	ENSMUSG00000054752.16	ENSMUST00000129648.2	protein_coding	chr4:53631716-53659678
chr4	53720963	53721200	-	7SK	RNA	RNA	chr4	53721199	53721201	-	ENSMUST00000158996.1,ENSMUSG00000089621.1	Gm25445	ENSMUSG00000089621.1	ENSMUST00000158996.1	misc_RNA	chr4:53720902-53721200
chr4	53860651	53860771	+	5S	rRNA	rRNA	chr4	53860651	53860653	+	ENSMUST00000083953.1,ENSMUSG00000065887.1	n-R5s185	ENSMUSG00000065887.1	ENSMUST00000083953.1	rRNA	chr4:53860652-53860770
chr4	54670192	54670228	+	(T)n	Simple_repeat	Simple_repeat	chr4	54670191	54670193	-	ENSMUST00000121221.1,ENSMUSG00000083868.1	Gm12477	ENSMUSG00000083868.1	ENSMUST00000121221.1	processed_pseudogene	chr4:54669622-54670192
chr4	54710623	54710863	+	7SK	RNA	RNA	chr4	54710623	54710625	+	ENSMUST00000122761.1,ENSMUSG00000084710.1	Gm24628	ENSMUSG00000084710.1	ENSMUST00000122761.1	misc_RNA	chr4:54710624-54710912
chr4	54947858	54948012	+	(GA)n	Simple_repeat	Simple_repeat	chr4	54947975	54947977	+	ENSMUST00000098070.9,ENSMUSG00000060206.11	Zfp462	ENSMUSG00000060206.11	ENSMUST00000098070.9	protein_coding	chr4:54947976-55083563
chr4	55279453	55279616	+	B3A	SINE	B2	chr4	55279478	55279480	-	ENSMUST00000150455.1,ENSMUSG00000087614.1	Gm12514	ENSMUSG00000087614.1	ENSMUST00000150455.1	lincRNA	chr4:55131208-55279479
chr4	55299841	55300007	+	(TC)n	Simple_repeat	Simple_repeat	chr4	55299844	55299846	-	ENSMUST00000104215.2,ENSMUSG00000077403.2	Gm25419	ENSMUSG00000077403.2	ENSMUST00000104215.2	snoRNA	chr4:55299655-55299845
chr4	55418833	55419637	+	RLTR6-int	LTR	ERV1	chr4	55418841	55418843	-	ENSMUST00000146041.1,ENSMUSG00000087070.1	Gm12505	ENSMUSG00000087070.1	ENSMUST00000146041.1	lincRNA	chr4:55410443-55418842
chr4	55469121	55469274	+	MT2B2	LTR	ERVL	chr4	55469158	55469160	-	ENSMUST00000104447.1,ENSMUSG00000077635.1	Gm22150	ENSMUSG00000077635.1	ENSMUST00000104447.1	snoRNA	chr4:55469025-55469159
chr4	55993169	55993746	+	MLTR31C_MM	LTR	ERVK	chr4	55993738	55993740	-	ENSMUST00000134099.1,ENSMUSG00000085643.1	Gm12519	ENSMUSG00000085643.1	ENSMUST00000134099.1	lincRNA	chr4:55969023-55993739
chr4	56763238	56763442	-	L1M4	LINE	L1	chr4	56763329	56763331	-	ENSMUST00000150002.7,ENSMUSG00000028431.11	Elp1	ENSMUSG00000028431.11	ENSMUST00000150002.7	protein_coding	chr4:56751015-56763330
chr4	56772552	56772743	+	ID_B1	SINE	B4	chr4	56772615	56772617	-	ENSMUST00000140595.1,ENSMUSG00000028431.11	Elp1	ENSMUSG00000028431.11	ENSMUST00000140595.1	protein_coding	chr4:56767857-56772616
chr4	56814222	56814681	+	RMER2	LTR	ERV1	chr4	56814318	56814320	-	ENSMUST00000131231.1,ENSMUSG00000038816.14	Ctnnal1	ENSMUSG00000038816.14	ENSMUST00000131231.1	protein_coding	chr4:56812140-56814319
chr4	56839645	56839802	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr4	56839666	56839668	-	ENSMUST00000127908.7,ENSMUSG00000038816.14	Ctnnal1	ENSMUSG00000038816.14	ENSMUST00000127908.7	protein_coding	chr4:56824058-56839667
chr4	56990114	56990171	+	GC_rich	Low_complexity	Low_complexity	chr4	56990135	56990137	-	ENSMUST00000128276.1,ENSMUSG00000045589.7	Frrs1l	ENSMUSG00000045589.7	ENSMUST00000128276.1	protein_coding	chr4:56960136-56990136
chr4	56990302	56990393	+	GC_rich	Low_complexity	Low_complexity	chr4	56990390	56990392	-	ENSMUST00000053681.5,ENSMUSG00000045589.7	Frrs1l	ENSMUSG00000045589.7	ENSMUST00000053681.5	protein_coding	chr4:56957173-56990391
chr4	57070518	57070663	-	RSINE1	SINE	B4	chr4	57070558	57070560	-	ENSMUST00000150665.1,ENSMUSG00000028434.12	Epb41l4b	ENSMUSG00000028434.12	ENSMUST00000150665.1	protein_coding	chr4:57063030-57070559
chr4	57637925	57637996	+	(TC)n	Simple_repeat	Simple_repeat	chr4	57637974	57637976	+	ENSMUST00000131201.1,ENSMUSG00000090053.9	Palm2	ENSMUSG00000090053.9	ENSMUST00000131201.1	protein_coding	chr4:57637975-57709489
chr4	57742094	57742234	+	B1F2	SINE	Alu	chr4	57742094	57742096	+	ENSMUST00000107600.7,ENSMUSG00000038729.23	Akap2	ENSMUSG00000038729.23	ENSMUST00000107600.7	protein_coding	chr4:57742095-57896982
chr4	57854028	57854219	-	B2_Mm1a	SINE	B2	chr4	57854158	57854160	+	ENSMUST00000043456.11,ENSMUSG00000038729.23	Akap2	ENSMUSG00000038729.23	ENSMUST00000043456.11	protein_coding	chr4:57854159-57896982
chr4	57854028	57854219	-	B2_Mm1a	SINE	B2	chr4	57854158	57854160	+	ENSMUST00000098064.8,ENSMUSG00000038729.23	Akap2	ENSMUSG00000038729.23	ENSMUST00000098064.8	protein_coding	chr4:57854159-57896982
chr4	57854028	57854219	-	B2_Mm1a	SINE	B2	chr4	57854158	57854160	+	ENSMUST00000102902.3,ENSMUSG00000038729.23	Akap2	ENSMUSG00000038729.23	ENSMUST00000102902.3	protein_coding	chr4:57854159-57896982
chr4	57877388	57877495	-	U6	snRNA	snRNA	chr4	57877494	57877496	-	ENSMUST00000179236.1,ENSMUSG00000096195.1	Gm26138	ENSMUSG00000096195.1	ENSMUST00000179236.1	snRNA	chr4:57877389-57877495
chr4	58178185	58178353	-	MIR	SINE	MIR	chr4	58178246	58178248	+	ENSMUST00000181523.1,ENSMUSG00000097249.1	Gm26889	ENSMUSG00000097249.1	ENSMUST00000181523.1	lincRNA	chr4:58178247-58206635
chr4	58206675	58206759	+	CT-rich	Low_complexity	Low_complexity	chr4	58206687	58206689	-	ENSMUST00000146329.1,ENSMUSG00000028369.15	Svep1	ENSMUSG00000028369.15	ENSMUST00000146329.1	protein_coding	chr4:58178103-58206688
chr4	58548368	58548496	+	B1F	SINE	Alu	chr4	58548400	58548402	-	ENSMUST00000155170.7,ENSMUSG00000038668.14	Lpar1	ENSMUSG00000038668.14	ENSMUST00000155170.7	protein_coding	chr4:58487045-58548401
chr4	58658502	58658663	+	RSINE1	SINE	B4	chr4	58658591	58658593	-	ENSMUST00000127456.1,ENSMUSG00000086470.1	Gm12580	ENSMUSG00000086470.1	ENSMUST00000127456.1	lincRNA	chr4:58648392-58658592
chr4	58844844	58844881	+	(TG)n	Simple_repeat	Simple_repeat	chr4	58844880	58844882	-	ENSMUST00000151869.1,ENSMUSG00000050812.18	Ecpas	ENSMUSG00000050812.18	ENSMUST00000151869.1	protein_coding	chr4:58836072-58844881
chr4	58912749	58912776	+	(GGA)n	Simple_repeat	Simple_repeat	chr4	58912748	58912750	-	ENSMUST00000102889.9,ENSMUSG00000050812.18	Ecpas	ENSMUSG00000050812.18	ENSMUST00000102889.9	protein_coding	chr4:58798911-58912749
chr4	58912749	58912776	+	(GGA)n	Simple_repeat	Simple_repeat	chr4	58912748	58912750	-	ENSMUST00000055822.14,ENSMUSG00000050812.18	Ecpas	ENSMUSG00000050812.18	ENSMUST00000055822.14	protein_coding	chr4:58860796-58912749
chr4	58938024	58938130	+	5S	rRNA	rRNA	chr4	58938024	58938026	+	ENSMUST00000175012.1,ENSMUSG00000092753.1	Gm26400	ENSMUSG00000092753.1	ENSMUST00000175012.1	rRNA	chr4:58938025-58938109
chr4	59137181	59137528	+	ORR1E	LTR	ERVL-MaLR	chr4	59137453	59137455	-	ENSMUST00000132140.1,ENSMUSG00000086660.1	Gm12594	ENSMUSG00000086660.1	ENSMUST00000132140.1	sense_intronic	chr4:59135068-59137454
chr4	59138815	59139313	-	MT2_Mm	LTR	ERVL	chr4	59138982	59138984	-	ENSMUST00000107547.1,ENSMUSG00000038598.9	AI481877	ENSMUSG00000038598.9	ENSMUST00000107547.1	protein_coding	chr4:59043753-59138983
chr4	59189542	59189576	+	GC_rich	Low_complexity	Low_complexity	chr4	59189557	59189559	+	ENSMUST00000133996.1,ENSMUSG00000028381.8	Ugcg	ENSMUSG00000028381.8	ENSMUST00000133996.1	protein_coding	chr4:59189558-59212203
chr4	59211656	59211797	-	B1_Mus2	SINE	Alu	chr4	59211719	59211721	+	ENSMUST00000128227.1,ENSMUSG00000028381.8	Ugcg	ENSMUSG00000028381.8	ENSMUST00000128227.1	protein_coding	chr4:59211720-59213909
chr4	59212252	59212826	-	Lx7	LINE	L1	chr4	59212655	59212657	+	ENSMUST00000155153.1,ENSMUSG00000028381.8	Ugcg	ENSMUSG00000028381.8	ENSMUST00000155153.1	protein_coding	chr4:59212656-59214293
chr4	59626217	59626261	+	GC_rich	Low_complexity	Low_complexity	chr4	59626242	59626244	+	ENSMUST00000052420.6,ENSMUSG00000045071.14	E130308A19Rik	ENSMUSG00000045071.14	ENSMUST00000052420.6	protein_coding	chr4:59626243-59721401
chr4	59801576	59801655	+	(TTC)n	Simple_repeat	Simple_repeat	chr4	59801588	59801590	-	ENSMUST00000143756.1,ENSMUSG00000038544.14	Inip	ENSMUSG00000038544.14	ENSMUST00000143756.1	protein_coding	chr4:59772372-59801589
chr4	59894727	59895048	-	ORR1A2	LTR	ERVL-MaLR	chr4	59894923	59894925	-	ENSMUST00000133015.1,ENSMUSG00000073843.3	Gm12542	ENSMUSG00000073843.3	ENSMUST00000133015.1	antisense	chr4:59889986-59894924
chr4	60155254	60155285	+	(CTG)n	Simple_repeat	Simple_repeat	chr4	60155273	60155275	+	ENSMUST00000142602.1,ENSMUSG00000073840.6	Mup-ps2	ENSMUSG00000073840.6	ENSMUST00000142602.1	unprocessed_pseudogene	chr4:60155274-60157966
chr4	60384391	60384501	+	IAPEY5_I-int	LTR	ERVK	chr4	60384493	60384495	+	ENSMUST00000122281.1,ENSMUSG00000096654.1	Mup-ps29	ENSMUSG00000096654.1	ENSMUST00000122281.1	processed_pseudogene	chr4:60384494-60384695
chr4	60385692	60390469	+	MMERVK10C-int	LTR	ERVK	chr4	60389860	60389862	+	ENSMUST00000120686.1,ENSMUSG00000083293.1	Mup-ps28	ENSMUSG00000083293.1	ENSMUST00000120686.1	processed_pseudogene	chr4:60389861-60390149
chr4	60479305	60479415	+	IAPEY5_I-int	LTR	ERVK	chr4	60479407	60479409	+	ENSMUST00000121751.1,ENSMUSG00000094202.1	Mup-ps26	ENSMUSG00000094202.1	ENSMUST00000121751.1	processed_pseudogene	chr4:60479408-60479609
chr4	60553382	60558178	+	MMERVK10C-int	LTR	ERVK	chr4	60557569	60557571	+	ENSMUST00000119939.1,ENSMUSG00000094235.1	Mup-ps24	ENSMUSG00000094235.1	ENSMUST00000119939.1	processed_pseudogene	chr4:60557570-60557855
chr4	61228274	61228315	+	(TTTTTG)n	Simple_repeat	Simple_repeat	chr4	61228285	61228287	-	ENSMUST00000098042.9,ENSMUSG00000089873.8	Mup13	ENSMUSG00000089873.8	ENSMUST00000098042.9	protein_coding	chr4:61224307-61228286
chr4	61452244	61452270	+	(CTG)n	Simple_repeat	Simple_repeat	chr4	61452243	61452245	+	ENSMUST00000126217.1,ENSMUSG00000073835.5	Mup-ps12	ENSMUSG00000073835.5	ENSMUST00000126217.1	unprocessed_pseudogene	chr4:61452244-61454952
chr4	61608277	61608303	+	(CTG)n	Simple_repeat	Simple_repeat	chr4	61608291	61608293	+	ENSMUST00000118437.1,ENSMUSG00000082065.1	Mup-ps14	ENSMUSG00000082065.1	ENSMUST00000118437.1	unprocessed_pseudogene	chr4:61608292-61610983
chr4	61745895	61750683	+	MMERVK10C-int	LTR	ERVK	chr4	61750074	61750076	+	ENSMUST00000118158.1,ENSMUSG00000095307.1	Gm12573	ENSMUSG00000095307.1	ENSMUST00000118158.1	processed_pseudogene	chr4:61750075-61750360
chr4	61883284	61883316	+	(CAG)n	Simple_repeat	Simple_repeat	chr4	61883295	61883297	-	ENSMUST00000120145.1,ENSMUSG00000082363.1	Mup-ps18	ENSMUSG00000082363.1	ENSMUST00000120145.1	unprocessed_pseudogene	chr4:61874700-61883296
chr4	62112905	62113025	+	B3	SINE	B2	chr4	62112930	62112932	+	ENSMUST00000135902.1,ENSMUSG00000086530.1	Gm12910	ENSMUSG00000086530.1	ENSMUST00000135902.1	antisense	chr4:62112931-62120929
chr4	62264313	62264420	+	U6	snRNA	snRNA	chr4	62264313	62264315	+	ENSMUST00000180367.1,ENSMUSG00000096713.1	Gm23148	ENSMUSG00000096713.1	ENSMUST00000180367.1	snRNA	chr4:62264314-62264420
chr4	62291486	62291586	-	B1F	SINE	Alu	chr4	62291546	62291548	+	ENSMUST00000107467.2,ENSMUSG00000066152.11	Slc31a2	ENSMUSG00000066152.11	ENSMUST00000107467.2	protein_coding	chr4:62291547-62297477
chr4	62435179	62435444	+	B4A	SINE	B4	chr4	62435251	62435253	-	ENSMUST00000107455.7,ENSMUSG00000063851.12	Rnf183	ENSMUSG00000063851.12	ENSMUST00000107455.7	protein_coding	chr4:62427540-62435252
chr4	62460801	62460990	+	B2_Mm1t	SINE	B2	chr4	62460848	62460850	-	ENSMUST00000149281.1,ENSMUSG00000028391.16	Wdr31	ENSMUSG00000028391.16	ENSMUST00000149281.1	protein_coding	chr4:62458386-62460849
chr4	62700675	62700894	-	MIRb	SINE	MIR	chr4	62700694	62700696	+	ENSMUST00000153875.2,ENSMUSG00000059810.18	Rgs3	ENSMUSG00000059810.18	ENSMUST00000153875.2	protein_coding	chr4:62700695-62704001
chr4	62965561	62965602	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	62965572	62965574	+	ENSMUST00000030043.12,ENSMUSG00000028358.15	Zfp618	ENSMUSG00000028358.15	ENSMUST00000030043.12	protein_coding	chr4:62965573-63115748
chr4	62965561	62965602	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	62965572	62965574	+	ENSMUST00000107415.7,ENSMUSG00000028358.15	Zfp618	ENSMUSG00000028358.15	ENSMUST00000107415.7	protein_coding	chr4:62965573-63139708
chr4	62965561	62965602	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	62965573	62965575	+	ENSMUST00000064814.5,ENSMUSG00000028358.15	Zfp618	ENSMUSG00000028358.15	ENSMUST00000064814.5	protein_coding	chr4:62965574-63134030
chr4	63154783	63154905	+	MIR	SINE	MIR	chr4	63154798	63154800	-	ENSMUST00000142901.1,ENSMUSG00000028356.4	Ambp	ENSMUSG00000028356.4	ENSMUST00000142901.1	protein_coding	chr4:63152698-63154799
chr4	63283127	63283613	-	Charlie1b	DNA	hAT-Charlie	chr4	63283512	63283514	+	ENSMUST00000149856.1,ENSMUSG00000045672.15	Col27a1	ENSMUSG00000045672.15	ENSMUST00000149856.1	protein_coding	chr4:63283513-63333749
chr4	63631682	63631788	-	U6	snRNA	snRNA	chr4	63631787	63631789	-	ENSMUST00000104316.1,ENSMUSG00000077504.1	Gm24234	ENSMUSG00000077504.1	ENSMUST00000104316.1	snRNA	chr4:63631682-63631788
chr4	63634326	63634425	+	MER2	DNA	TcMar-Tigger	chr4	63634420	63634422	+	ENSMUST00000147067.1,ENSMUSG00000086817.1	Gm11482	ENSMUSG00000086817.1	ENSMUST00000147067.1	lincRNA	chr4:63634421-63639440
chr4	64444641	64444733	+	Lx9	LINE	L1	chr4	64444729	64444731	+	ENSMUST00000104026.1,ENSMUSG00000077214.1	Gm23950	ENSMUSG00000077214.1	ENSMUST00000104026.1	snoRNA	chr4:64444730-64444858
chr4	66828159	66828255	+	MIRc	SINE	MIR	chr4	66828201	66828203	+	ENSMUST00000147008.1,ENSMUSG00000039005.13	Tlr4	ENSMUSG00000039005.13	ENSMUST00000147008.1	protein_coding	chr4:66828202-66839618
chr4	68182531	68182685	+	U1	snRNA	snRNA	chr4	68182531	68182533	+	ENSMUST00000082828.1,ENSMUSG00000064762.1	Gm23738	ENSMUSG00000064762.1	ENSMUST00000082828.1	snRNA	chr4:68182532-68182702
chr4	68321717	68326015	+	L1_Mus2	LINE	L1	chr4	68321960	68321962	-	ENSMUST00000140639.1,ENSMUSG00000086790.1	Gm12911	ENSMUSG00000086790.1	ENSMUST00000140639.1	lincRNA	chr4:68312657-68321961
chr4	69110670	69110776	+	U6	snRNA	snRNA	chr4	69110670	69110672	+	ENSMUST00000083881.1,ENSMUSG00000065815.1	Gm24697	ENSMUSG00000065815.1	ENSMUST00000083881.1	snRNA	chr4:69110671-69110777
chr4	70412907	70412961	+	ORR1F	LTR	ERVL-MaLR	chr4	70412922	70412924	-	ENSMUST00000157742.1,ENSMUSG00000088367.1	Gm26320	ENSMUSG00000088367.1	ENSMUST00000157742.1	misc_RNA	chr4:70412618-70412923
chr4	71980339	71980502	-	RLTR42-int	LTR	ERVK	chr4	71980476	71980478	+	ENSMUST00000141030.1,ENSMUSG00000086696.1	Gm11234	ENSMUSG00000086696.1	ENSMUST00000141030.1	lincRNA	chr4:71980477-71999559
chr4	73418423	73420263	+	RMER15-int	LTR	ERVL	chr4	73418689	73418691	-	ENSMUST00000107322.3,ENSMUSG00000080222.2	Gm11486	ENSMUSG00000080222.2	ENSMUST00000107322.3	unprocessed_pseudogene	chr4:73415301-73418690
chr4	76958374	76958509	+	MT2B	LTR	ERVL	chr4	76958497	76958499	-	ENSMUST00000175088.1,ENSMUSG00000092829.1	Gm23159	ENSMUSG00000092829.1	ENSMUST00000175088.1	miRNA	chr4:76958422-76958498
chr4	76958399	76958546	+	B1_Mur4	SINE	Alu	chr4	76958497	76958499	-	ENSMUST00000175088.1,ENSMUSG00000092829.1	Gm23159	ENSMUSG00000092829.1	ENSMUST00000175088.1	miRNA	chr4:76958422-76958498
chr4	76958402	76958564	+	B4	SINE	B4	chr4	76958497	76958499	-	ENSMUST00000175088.1,ENSMUSG00000092829.1	Gm23159	ENSMUSG00000092829.1	ENSMUST00000175088.1	miRNA	chr4:76958422-76958498
chr4	78211876	78211908	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	78211894	78211896	-	ENSMUST00000107287.8,ENSMUSG00000028399.18	Ptprd	ENSMUSG00000028399.18	ENSMUST00000107287.8	protein_coding	chr4:76139382-78211895
chr4	78660289	78660419	-	RLTR10-int	LTR	ERVK	chr4	78660381	78660383	-	ENSMUST00000126647.1,ENSMUSG00000085840.1	Gm11261	ENSMUSG00000085840.1	ENSMUST00000126647.1	lincRNA	chr4:78659967-78660382
chr4	78661396	78661834	-	RLTR10	LTR	ERVK	chr4	78661587	78661589	-	ENSMUST00000132470.1,ENSMUSG00000085840.1	Gm11261	ENSMUSG00000085840.1	ENSMUST00000132470.1	lincRNA	chr4:78659858-78661588
chr4	78661396	78661834	-	RLTR10	LTR	ERVK	chr4	78661574	78661576	-	ENSMUST00000123051.1,ENSMUSG00000085840.1	Gm11261	ENSMUSG00000085840.1	ENSMUST00000123051.1	lincRNA	chr4:78659960-78661575
chr4	82859917	82860051	+	MER5A1	DNA	hAT-Charlie	chr4	82859957	82859959	-	ENSMUST00000107239.7,ENSMUSG00000028403.15	Zdhhc21	ENSMUSG00000028403.15	ENSMUST00000107239.7	protein_coding	chr4:82806209-82859958
chr4	83285803	83285910	-	U6	snRNA	snRNA	chr4	83285909	83285911	-	ENSMUST00000083017.1,ENSMUSG00000096801.1	Gm23412	ENSMUSG00000096801.1	ENSMUST00000083017.1	snRNA	chr4:83285804-83285910
chr4	83390630	83390995	+	MLTR14	LTR	ERV1	chr4	83390667	83390669	-	ENSMUST00000155822.1,ENSMUSG00000086321.1	Gm11413	ENSMUSG00000086321.1	ENSMUST00000155822.1	antisense	chr4:83378317-83390668
chr4	83463905	83464013	+	B1_Mur3	SINE	Alu	chr4	83463975	83463977	+	ENSMUST00000130676.2,ENSMUSG00000028483.13	Snapc3	ENSMUSG00000028483.13	ENSMUST00000130676.2	protein_coding	chr4:83463976-83467211
chr4	83465010	83465140	+	T-rich	Low_complexity	Low_complexity	chr4	83465042	83465044	-	ENSMUST00000144349.1,ENSMUSG00000028484.16	Psip1	ENSMUSG00000028484.16	ENSMUST00000144349.1	protein_coding	chr4:83462830-83465043
chr4	83527624	83527768	-	U4	snRNA	snRNA	chr4	83527767	83527769	-	ENSMUST00000082672.1,ENSMUSG00000064606.1	Gm25899	ENSMUSG00000064606.1	ENSMUST00000082672.1	snRNA	chr4:83527628-83527768
chr4	83695910	83695955	+	(CA)n	Simple_repeat	Simple_repeat	chr4	83695954	83695956	+	ENSMUST00000183729.1,ENSMUSG00000052407.17	Ccdc171	ENSMUSG00000052407.17	ENSMUST00000183729.1	protein_coding	chr4:83695955-83798676
chr4	83695955	83696153	-	B3A	SINE	B2	chr4	83695954	83695956	+	ENSMUST00000183729.1,ENSMUSG00000052407.17	Ccdc171	ENSMUSG00000052407.17	ENSMUST00000183729.1	protein_coding	chr4:83695955-83798676
chr4	83701064	83701085	+	AT_rich	Low_complexity	Low_complexity	chr4	83701083	83701085	+	ENSMUST00000118595.1,ENSMUSG00000080793.1	Cbx3-ps3	ENSMUSG00000080793.1	ENSMUST00000118595.1	processed_pseudogene	chr4:83701084-83702036
chr4	84675042	84675164	+	C-rich	Low_complexity	Low_complexity	chr4	84675066	84675068	-	ENSMUST00000107198.8,ENSMUSG00000028487.18	Bnc2	ENSMUSG00000028487.18	ENSMUST00000107198.8	protein_coding	chr4:84275229-84675067
chr4	84675042	84675164	+	C-rich	Low_complexity	Low_complexity	chr4	84675085	84675087	-	ENSMUST00000176691.7,ENSMUSG00000028487.18	Bnc2	ENSMUSG00000028487.18	ENSMUST00000176691.7	protein_coding	chr4:84275610-84675086
chr4	84675042	84675164	+	C-rich	Low_complexity	Low_complexity	chr4	84675077	84675079	-	ENSMUST00000175756.7,ENSMUSG00000028487.18	Bnc2	ENSMUSG00000028487.18	ENSMUST00000175756.7	protein_coding	chr4:84391052-84675078
chr4	85205444	85205473	+	GC_rich	Low_complexity	Low_complexity	chr4	85205468	85205470	+	ENSMUST00000107189.7,ENSMUSG00000028488.15	Sh3gl2	ENSMUSG00000028488.15	ENSMUST00000107189.7	protein_coding	chr4:85205469-85639195
chr4	85245749	85245776	+	GC_rich	Low_complexity	Low_complexity	chr4	85245761	85245763	-	ENSMUST00000121508.1,ENSMUSG00000081862.1	Gm12413	ENSMUSG00000081862.1	ENSMUST00000121508.1	processed_pseudogene	chr4:85245451-85245762
chr4	86043393	86043494	-	U6	snRNA	snRNA	chr4	86043493	86043495	-	ENSMUST00000082753.1,ENSMUSG00000064687.1	Gm25811	ENSMUSG00000064687.1	ENSMUST00000082753.1	snRNA	chr4:86043394-86043494
chr4	86538918	86539280	-	ORR1F	LTR	ERVL-MaLR	chr4	86539116	86539118	-	ENSMUST00000151481.7,ENSMUSG00000028492.13	Saxo1	ENSMUSG00000028492.13	ENSMUST00000151481.7	protein_coding	chr4:86444641-86539117
chr4	86659043	86659195	+	B1F2	SINE	Alu	chr4	86659147	86659149	-	ENSMUST00000134437.1,ENSMUSG00000028494.12	Plin2	ENSMUSG00000028494.12	ENSMUST00000134437.1	protein_coding	chr4:86657156-86659148
chr4	86665566	86665842	+	B4A	SINE	B4	chr4	86665724	86665726	-	ENSMUST00000147097.2,ENSMUSG00000028494.12	Plin2	ENSMUSG00000028494.12	ENSMUST00000147097.2	protein_coding	chr4:86660121-86665725
chr4	86930604	86930763	+	RLTR51A_Mm	LTR	ERVK?	chr4	86930690	86930692	+	ENSMUST00000135874.1,ENSMUSG00000038007.14	Acer2	ENSMUSG00000038007.14	ENSMUST00000135874.1	protein_coding	chr4:86930691-86934822
chr4	87298022	87298891	-	Charlie24	DNA	hAT-Charlie	chr4	87298361	87298363	+	ENSMUST00000146704.1,ENSMUSG00000086512.1	Gm12600	ENSMUSG00000086512.1	ENSMUST00000146704.1	lincRNA	chr4:87298362-87301270
chr4	88124365	88124448	+	MIR	SINE	MIR	chr4	88124435	88124437	+	ENSMUST00000147527.1,ENSMUSG00000038368.16	Focad	ENSMUSG00000038368.16	ENSMUST00000147527.1	protein_coding	chr4:88124436-88154720
chr4	88281214	88288079	-	L1Md_T	LINE	L1	chr4	88287634	88287636	+	ENSMUST00000144388.1,ENSMUSG00000038368.16	Focad	ENSMUSG00000038368.16	ENSMUST00000144388.1	protein_coding	chr4:88287635-88303630
chr4	88400195	88400693	-	RLTR30D2_MM	LTR	ERV1	chr4	88400349	88400351	+	ENSMUST00000162039.1,ENSMUSG00000038368.16	Focad	ENSMUSG00000038368.16	ENSMUST00000162039.1	protein_coding	chr4:88400350-88407219
chr4	88400195	88400693	-	RLTR30D2_MM	LTR	ERV1	chr4	88400564	88400566	+	ENSMUST00000107147.1,ENSMUSG00000038368.16	Focad	ENSMUSG00000038368.16	ENSMUST00000107147.1	protein_coding	chr4:88400565-88411011
chr4	88938290	88938657	+	L1M4b	LINE	L1	chr4	88938520	88938522	-	ENSMUST00000233522.1,ENSMUSG00000117123.1	AL805899.1	ENSMUSG00000117123.1	ENSMUST00000233522.1	lincRNA	chr4:88909855-88938521
chr4	89038820	89039251	-	L1MB2	LINE	L1	chr4	89039191	89039193	-	ENSMUST00000232991.1,ENSMUSG00000117251.1	AL805899.2	ENSMUSG00000117251.1	ENSMUST00000232991.1	lincRNA	chr4:88995118-89039192
chr4	89176311	89176566	-	ORR1D1	LTR	ERVL-MaLR	chr4	89176373	89176375	+	ENSMUST00000204571.1,ENSMUSG00000062937.7	Mtap	ENSMUSG00000062937.7	ENSMUST00000204571.1	protein_coding	chr4:89176374-89179474
chr4	89272377	89272731	+	Lx4A	LINE	L1	chr4	89272586	89272588	-	ENSMUST00000129527.7,ENSMUSG00000087659.7	Gm12606	ENSMUSG00000087659.7	ENSMUST00000129527.7	lincRNA	chr4:89235699-89272587
chr4	90185040	90185810	+	Lx3_Mus	LINE	L1	chr4	90185526	90185528	+	ENSMUST00000145751.1,ENSMUSG00000085690.1	Gm12629	ENSMUSG00000085690.1	ENSMUST00000145751.1	lincRNA	chr4:90185527-90190009
chr4	90218706	90219073	+	MT2B1	LTR	ERVL	chr4	90218819	90218821	+	ENSMUST00000107129.1,ENSMUSG00000070902.5	Zfp352	ENSMUSG00000070902.5	ENSMUST00000107129.1	protein_coding	chr4:90218820-90225702
chr4	90544370	90544505	+	MTD	LTR	ERVL-MaLR	chr4	90544369	90544371	-	ENSMUST00000117395.1,ENSMUSG00000082502.1	Gm12636	ENSMUSG00000082502.1	ENSMUST00000117395.1	processed_pseudogene	chr4:90543747-90544370
chr4	91626461	91626854	+	MTA_Mm	LTR	ERVL-MaLR	chr4	91626588	91626590	+	ENSMUST00000134966.1,ENSMUSG00000085817.1	Gm12668	ENSMUSG00000085817.1	ENSMUST00000134966.1	lincRNA	chr4:91626589-91630139
chr4	91646187	91646383	+	Lx9	LINE	L1	chr4	91646314	91646316	+	ENSMUST00000123606.1,ENSMUSG00000086042.1	Gm12670	ENSMUSG00000086042.1	ENSMUST00000123606.1	lincRNA	chr4:91646315-91651152
chr4	93600978	93601085	+	U6	snRNA	snRNA	chr4	93600978	93600980	+	ENSMUST00000104007.1,ENSMUSG00000095898.1	Gm24796	ENSMUSG00000095898.1	ENSMUST00000104007.1	snRNA	chr4:93600979-93601085
chr4	93670893	93671353	-	RMER15	LTR	ERVL	chr4	93671069	93671071	-	ENSMUST00000137509.1,ENSMUSG00000084833.1	Gm12649	ENSMUSG00000084833.1	ENSMUST00000137509.1	lincRNA	chr4:93453258-93671070
chr4	93745687	93746205	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr4	93745996	93745998	-	ENSMUST00000179516.1,ENSMUSG00000095856.1	Gm22619	ENSMUSG00000095856.1	ENSMUST00000179516.1	miRNA	chr4:93745888-93745997
chr4	94425500	94425793	-	IAPLTR4	LTR	ERVK	chr4	94425587	94425589	-	ENSMUST00000126270.1,ENSMUSG00000085931.1	Gm12648	ENSMUSG00000085931.1	ENSMUST00000126270.1	lincRNA	chr4:94089576-94425588
chr4	94477114	94477427	-	MTEa	LTR	ERVL-MaLR	chr4	94477179	94477181	-	ENSMUST00000133884.7,ENSMUSG00000087128.7	Gm12655	ENSMUSG00000087128.7	ENSMUST00000133884.7	processed_transcript	chr4:94460931-94477180
chr4	94477114	94477427	-	MTEa	LTR	ERVL-MaLR	chr4	94477166	94477168	-	ENSMUST00000127678.1,ENSMUSG00000087128.7	Gm12655	ENSMUSG00000087128.7	ENSMUST00000127678.1	processed_transcript	chr4:94462019-94477167
chr4	94556534	94556609	+	C-rich	Low_complexity	Low_complexity	chr4	94556545	94556547	+	ENSMUST00000094969.1,ENSMUSG00000070900.1	Gm10306	ENSMUSG00000070900.1	ENSMUST00000094969.1	protein_coding	chr4:94556546-94557078
chr4	94576379	94576401	+	(A)n	Simple_repeat	Simple_repeat	chr4	94576387	94576389	-	ENSMUST00000129748.1,ENSMUSG00000028577.13	Plaa	ENSMUSG00000028577.13	ENSMUST00000129748.1	protein_coding	chr4:94567514-94576388
chr4	94935421	94935643	+	RLTR16	LTR	ERVK	chr4	94935620	94935622	+	ENSMUST00000121965.1,ENSMUSG00000083179.3	Gm12693	ENSMUSG00000083179.3	ENSMUST00000121965.1	processed_pseudogene	chr4:94935621-94936103
chr4	96916199	96917215	+	RLTR25B	LTR	ERVK	chr4	96916944	96916946	+	ENSMUST00000158113.2,ENSMUSG00000088738.2	Gm27579	ENSMUSG00000088738.2	ENSMUST00000158113.2	snRNA	chr4:96916945-96917007
chr4	96916199	96917215	+	RLTR25B	LTR	ERVK	chr4	96917019	96917021	+	ENSMUST00000184022.1,ENSMUSG00000098261.1	Gm27521	ENSMUSG00000098261.1	ENSMUST00000184022.1	snRNA	chr4:96917020-96917083
chr4	97182959	97183407	+	L1_Mus2	LINE	L1	chr4	97183165	97183167	-	ENSMUST00000086672.2,ENSMUSG00000066990.2	Gm10192	ENSMUSG00000066990.2	ENSMUST00000086672.2	protein_coding	chr4:97182840-97183166
chr4	97777588	97777690	+	G-rich	Low_complexity	Low_complexity	chr4	97777607	97777609	+	ENSMUST00000075448.12,ENSMUSG00000028565.18	Nfia	ENSMUSG00000028565.18	ENSMUST00000075448.12	protein_coding	chr4:97777608-98118871
chr4	97777588	97777690	+	G-rich	Low_complexity	Low_complexity	chr4	97777625	97777627	+	ENSMUST00000092532.12,ENSMUSG00000028565.18	Nfia	ENSMUSG00000028565.18	ENSMUST00000092532.12	protein_coding	chr4:97777626-98118874
chr4	98275725	98275832	+	HY1	scRNA	scRNA	chr4	98275724	98275726	+	ENSMUST00000082949.1,ENSMUSG00000064883.1	Gm24203	ENSMUSG00000064883.1	ENSMUST00000082949.1	misc_RNA	chr4:98275725-98275838
chr4	98557737	98557875	+	B1_Mus1	SINE	Alu	chr4	98557864	98557866	-	ENSMUST00000175382.1,ENSMUSG00000094456.1	Gm22625	ENSMUSG00000094456.1	ENSMUST00000175382.1	miRNA	chr4:98557740-98557865
chr4	98745587	98746007	-	MTC	LTR	ERVL-MaLR	chr4	98745734	98745736	+	ENSMUST00000166016.1,ENSMUSG00000090718.1	Gm17376	ENSMUSG00000090718.1	ENSMUST00000166016.1	pseudogene	chr4:98745735-98745822
chr4	98793649	98794061	+	RLTR31C_MM	LTR	ERVK	chr4	98793767	98793769	+	ENSMUST00000133455.1,ENSMUSG00000085843.1	Kank4os	ENSMUSG00000085843.1	ENSMUST00000133455.1	antisense	chr4:98793768-98798900
chr4	98823619	98824087	-	MT2C_Mm	LTR	ERVL	chr4	98823839	98823841	-	ENSMUST00000097964.2,ENSMUSG00000073794.3	I0C0044D17Rik	ENSMUSG00000073794.3	ENSMUST00000097964.2	protein_coding	chr4:98818475-98823840
chr4	98994945	98994977	+	(TTTTC)n	Simple_repeat	Simple_repeat	chr4	98994957	98994959	-	ENSMUST00000205783.1,ENSMUSG00000028556.15	Dock7	ENSMUSG00000028556.15	ENSMUST00000205783.1	protein_coding	chr4:98992629-98994958
chr4	99067107	99067159	+	Lx7	LINE	L1	chr4	99067110	99067112	-	ENSMUST00000206604.1,ENSMUSG00000028556.15	Dock7	ENSMUSG00000028556.15	ENSMUST00000206604.1	protein_coding	chr4:99063753-99067111
chr4	99569304	99569545	-	RLTR27	LTR	ERVK	chr4	99569499	99569501	+	ENSMUST00000132108.1,ENSMUSG00000087332.1	Gm12690	ENSMUSG00000087332.1	ENSMUST00000132108.1	lincRNA	chr4:99569500-99573011
chr4	99909796	99909864	+	U4	snRNA	snRNA	chr4	99909796	99909798	+	ENSMUST00000122529.1,ENSMUSG00000084478.1	Gm26425	ENSMUSG00000084478.1	ENSMUST00000122529.1	snRNA	chr4:99909797-99909878
chr4	100052412	100052522	-	MIRb	SINE	MIR	chr4	100052519	100052521	+	ENSMUST00000123258.1,ENSMUSG00000085142.1	Gm12702	ENSMUSG00000085142.1	ENSMUST00000123258.1	lincRNA	chr4:100052520-100065984
chr4	100119442	100119707	+	ORR1A2	LTR	ERVL-MaLR	chr4	100119620	100119622	+	ENSMUST00000134206.1,ENSMUSG00000086385.1	Gm12701	ENSMUSG00000086385.1	ENSMUST00000134206.1	sense_intronic	chr4:100119621-100120841
chr4	101054643	101060251	+	L1Md_A	LINE	L1	chr4	101055262	101055264	-	ENSMUST00000191927.1,ENSMUSG00000102578.1	Gm10576	ENSMUSG00000102578.1	ENSMUST00000191927.1	TEC	chr4:101054439-101055263
chr4	101054643	101060251	+	L1Md_A	LINE	L1	chr4	101055261	101055263	-	ENSMUST00000192528.1,ENSMUSG00000102578.1	Gm10576	ENSMUSG00000102578.1	ENSMUST00000192528.1	TEC	chr4:101054558-101055262
chr4	101068966	101069052	+	GC_rich	Low_complexity	Low_complexity	chr4	101068982	101068984	+	ENSMUST00000106955.1,ENSMUSG00000035275.14	Raver2	ENSMUSG00000035275.14	ENSMUST00000106955.1	protein_coding	chr4:101068983-101135356
chr4	101068966	101069052	+	GC_rich	Low_complexity	Low_complexity	chr4	101068982	101068984	+	ENSMUST00000038463.14,ENSMUSG00000035275.14	Raver2	ENSMUSG00000035275.14	ENSMUST00000038463.14	protein_coding	chr4:101068983-101152370
chr4	101103445	101104501	-	MLTR25A	LTR	ERVK	chr4	101103649	101103651	-	ENSMUST00000157926.1,ENSMUSG00000088551.1	Gm22100	ENSMUSG00000088551.1	ENSMUST00000157926.1	snRNA	chr4:101103588-101103650
chr4	101186763	101186865	+	U6	snRNA	snRNA	chr4	101186763	101186765	+	ENSMUST00000104489.1,ENSMUSG00000077677.1	Gm24468	ENSMUSG00000077677.1	ENSMUST00000104489.1	snRNA	chr4:101186764-101186867
chr4	101321543	101321866	-	ORR1A2	LTR	ERVL-MaLR	chr4	101321744	101321746	-	ENSMUST00000131864.1,ENSMUSG00000085721.1	Gm12796	ENSMUSG00000085721.1	ENSMUST00000131864.1	lincRNA	chr4:101292414-101321745
chr4	101402598	101403214	-	RMER6-int	LTR	ERVK	chr4	101403080	101403082	+	ENSMUST00000124786.1,ENSMUSG00000084758.1	Gm12798	ENSMUSG00000084758.1	ENSMUST00000124786.1	lincRNA	chr4:101403081-101407856
chr4	101555094	101555321	+	7SK	RNA	RNA	chr4	101555094	101555096	+	ENSMUST00000158821.1,ENSMUSG00000089446.1	Gm22533	ENSMUSG00000089446.1	ENSMUST00000158821.1	misc_RNA	chr4:101555095-101555368
chr4	101788706	101789052	+	ORR1A0	LTR	ERVL-MaLR	chr4	101788913	101788915	+	ENSMUST00000151733.1,ENSMUSG00000057722.17	Lepr	ENSMUSG00000057722.17	ENSMUST00000151733.1	protein_coding	chr4:101788914-101792156
chr4	101843829	101844302	-	MT2_Mm	LTR	ERVL	chr4	101844022	101844024	-	ENSMUST00000106919.7,ENSMUSG00000035201.15	B020004J07Rik	ENSMUSG00000035201.15	ENSMUST00000106919.7	protein_coding	chr4:101834969-101844023
chr4	101980859	101981352	-	MT2_Mm	LTR	ERVL	chr4	101981048	101981050	-	ENSMUST00000106916.1,ENSMUSG00000078626.2	Gm12790	ENSMUSG00000078626.2	ENSMUST00000106916.1	protein_coding	chr4:101967453-101981049
chr4	101986552	101987025	+	MT2C_Mm	LTR	ERVL	chr4	101986625	101986627	+	ENSMUST00000106914.7,ENSMUSG00000078625.10	Gm12789	ENSMUSG00000078625.10	ENSMUST00000106914.7	protein_coding	chr4:101986626-101990053
chr4	101986552	101987025	+	MT2C_Mm	LTR	ERVL	chr4	101986859	101986861	+	ENSMUST00000151553.1,ENSMUSG00000078625.10	Gm12789	ENSMUSG00000078625.10	ENSMUST00000151553.1	protein_coding	chr4:101986860-101989084
chr4	102988478	102988825	-	ORR1D2	LTR	ERVL-MaLR	chr4	102988572	102988574	+	ENSMUST00000116317.8,ENSMUSG00000028523.14	Tctex1d1	ENSMUSG00000028523.14	ENSMUST00000116317.8	protein_coding	chr4:102988573-103005594
chr4	103075564	103075875	+	L1MDa	LINE	L1	chr4	103075618	103075620	-	ENSMUST00000136355.1,ENSMUSG00000035126.19	Wdr78	ENSMUSG00000035126.19	ENSMUST00000136355.1	protein_coding	chr4:103038101-103075619
chr4	103158584	103158619	+	(T)n	Simple_repeat	Simple_repeat	chr4	103158585	103158587	+	ENSMUST00000128536.1,ENSMUSG00000028522.16	Mier1	ENSMUSG00000028522.16	ENSMUST00000128536.1	protein_coding	chr4:103158586-103162823
chr4	103217627	103217739	-	B3A	SINE	B2	chr4	103217701	103217703	+	ENSMUST00000204816.1,ENSMUSG00000107726.1	Gm44037	ENSMUSG00000107726.1	ENSMUST00000204816.1	lincRNA	chr4:103217702-103219592
chr4	103324449	103324663	-	ID_B1	SINE	B4	chr4	103324483	103324485	+	ENSMUST00000143399.1,ENSMUSG00000035069.3	Oma1	ENSMUSG00000035069.3	ENSMUST00000143399.1	protein_coding	chr4:103324484-103328889
chr4	103382159	103382516	+	MTEb	LTR	ERVL-MaLR	chr4	103382499	103382501	+	ENSMUST00000156144.1,ENSMUSG00000086136.1	Gm12718	ENSMUSG00000086136.1	ENSMUST00000156144.1	lincRNA	chr4:103382500-103492040
chr4	103471790	103472184	+	MTA_Mm	LTR	ERVL-MaLR	chr4	103471858	103471860	+	ENSMUST00000179866.1,ENSMUSG00000094477.1	Gm23064	ENSMUSG00000094477.1	ENSMUST00000179866.1	miRNA	chr4:103471859-103471959
chr4	103586388	103586794	-	L1MB2	LINE	L1	chr4	103586399	103586401	-	ENSMUST00000104326.1,ENSMUSG00000077514.1	Gm25877	ENSMUSG00000077514.1	ENSMUST00000104326.1	snoRNA	chr4:103586272-103586400
chr4	104857279	104857624	+	ORR1D1	LTR	ERVL-MaLR	chr4	104857328	104857330	+	ENSMUST00000179793.1,ENSMUSG00000095386.1	Gm17662	ENSMUSG00000095386.1	ENSMUST00000179793.1	protein_coding	chr4:104857329-104859137
chr4	105109835	105109893	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	105109889	105109891	-	ENSMUST00000030243.7,ENSMUSG00000028518.8	Prkaa2	ENSMUSG00000028518.8	ENSMUST00000030243.7	protein_coding	chr4:105029874-105109890
chr4	106118963	106119439	-	RLTR16	LTR	ERVK	chr4	106119079	106119081	-	ENSMUST00000157308.1,ENSMUSG00000087933.1	Gm26047	ENSMUSG00000087933.1	ENSMUST00000157308.1	snoRNA	chr4:106118968-106119080
chr4	106118963	106119439	-	RLTR16	LTR	ERVK	chr4	106119081	106119083	-	ENSMUST00000198840.1,ENSMUSG00000106163.1	Gm26047	ENSMUSG00000106163.1	ENSMUST00000198840.1	snoRNA	chr4:106118968-106119082
chr4	106240912	106241405	+	MT2_Mm	LTR	ERVL	chr4	106241215	106241217	+	ENSMUST00000140196.1,ENSMUSG00000086249.1	Gm12724	ENSMUSG00000086249.1	ENSMUST00000140196.1	processed_transcript	chr4:106241216-106290026
chr4	106911500	106911528	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	106911510	106911512	+	ENSMUST00000149926.7,ENSMUSG00000061887.14	Ssbp3	ENSMUSG00000061887.14	ENSMUST00000149926.7	protein_coding	chr4:106911511-107038742
chr4	107046913	107047130	+	B4A	SINE	B4	chr4	107046953	107046955	+	ENSMUST00000136487.1,ENSMUSG00000061887.14	Ssbp3	ENSMUSG00000061887.14	ENSMUST00000136487.1	protein_coding	chr4:107046954-107048450
chr4	107235936	107236083	-	B1_Mus2	SINE	Alu	chr4	107235979	107235981	-	ENSMUST00000142657.1,ENSMUSG00000028617.10	Lrrc42	ENSMUSG00000028617.10	ENSMUST00000142657.1	protein_coding	chr4:107233759-107235980
chr4	107253099	107253226	+	C-rich	Low_complexity	Low_complexity	chr4	107253159	107253161	-	ENSMUST00000156771.1,ENSMUSG00000028617.10	Lrrc42	ENSMUSG00000028617.10	ENSMUST00000156771.1	protein_coding	chr4:107247413-107253160
chr4	107253841	107253909	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	107253897	107253899	+	ENSMUST00000156934.7,ENSMUSG00000063172.13	Hspb11	ENSMUSG00000063172.13	ENSMUST00000156934.7	protein_coding	chr4:107253898-107264779
chr4	107253841	107253909	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	107253902	107253904	+	ENSMUST00000106749.7,ENSMUSG00000063172.13	Hspb11	ENSMUSG00000063172.13	ENSMUST00000106749.7	protein_coding	chr4:107253903-107279938
chr4	107315130	107315342	-	L1MEc	LINE	L1	chr4	107315131	107315133	+	ENSMUST00000155975.1,ENSMUSG00000057375.13	Yipf1	ENSMUSG00000057375.13	ENSMUST00000155975.1	protein_coding	chr4:107315132-107315837
chr4	107324599	107324729	-	B1_Mus1	SINE	Alu	chr4	107324654	107324656	+	ENSMUST00000128507.1,ENSMUSG00000057375.13	Yipf1	ENSMUSG00000057375.13	ENSMUST00000128507.1	protein_coding	chr4:107324655-107336502
chr4	107381265	107381518	-	Tigger6b	DNA	TcMar-Tigger	chr4	107381461	107381463	+	ENSMUST00000132950.1,ENSMUSG00000028614.14	Ndc1	ENSMUSG00000028614.14	ENSMUST00000132950.1	protein_coding	chr4:107381462-107390292
chr4	107434557	107434579	+	GC_rich	Low_complexity	Low_complexity	chr4	107434571	107434573	+	ENSMUST00000174982.1,ENSMUSG00000092723.1	Gm24804	ENSMUSG00000092723.1	ENSMUST00000174982.1	miRNA	chr4:107434572-107434656
chr4	107434595	107434640	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	107434616	107434618	+	ENSMUST00000135835.7,ENSMUSG00000034762.9	Glis1	ENSMUSG00000034762.9	ENSMUST00000135835.7	protein_coding	chr4:107434617-107563900
chr4	107434701	107434722	+	GC_rich	Low_complexity	Low_complexity	chr4	107434718	107434720	+	ENSMUST00000046005.8,ENSMUSG00000034762.9	Glis1	ENSMUSG00000034762.9	ENSMUST00000046005.8	protein_coding	chr4:107434719-107635061
chr4	107689005	107689760	+	RMER6A	LTR	ERVK	chr4	107689700	107689702	+	ENSMUST00000143064.7,ENSMUSG00000085549.7	1700047F07Rik	ENSMUSG00000085549.7	ENSMUST00000143064.7	lincRNA	chr4:107689701-107758985
chr4	107689005	107689760	+	RMER6A	LTR	ERVK	chr4	107689732	107689734	+	ENSMUST00000151438.1,ENSMUSG00000085549.7	1700047F07Rik	ENSMUSG00000085549.7	ENSMUST00000151438.1	lincRNA	chr4:107689733-107708587
chr4	107697720	107698207	-	MT2_Mm	LTR	ERVL	chr4	107697953	107697955	-	ENSMUST00000179154.1,ENSMUSG00000094267.1	Gm25123	ENSMUSG00000094267.1	ENSMUST00000179154.1	miRNA	chr4:107697834-107697954
chr4	107802285	107802324	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	107802313	107802315	+	ENSMUST00000030356.9,ENSMUSG00000028613.14	Lrp8	ENSMUSG00000028613.14	ENSMUST00000030356.9	protein_coding	chr4:107802314-107873899
chr4	107822788	107823121	-	RLTR15	LTR	ERVK	chr4	107823021	107823023	-	ENSMUST00000188737.6,ENSMUSG00000073779.7	Lrp8os2	ENSMUSG00000073779.7	ENSMUST00000188737.6	antisense	chr4:107806033-107823022
chr4	107822788	107823121	-	RLTR15	LTR	ERVK	chr4	107822973	107822975	-	ENSMUST00000138289.1,ENSMUSG00000073779.7	Lrp8os2	ENSMUSG00000073779.7	ENSMUST00000138289.1	antisense	chr4:107807988-107822974
chr4	107822788	107823121	-	RLTR15	LTR	ERVK	chr4	107823009	107823011	-	ENSMUST00000150323.1,ENSMUSG00000073779.7	Lrp8os2	ENSMUSG00000073779.7	ENSMUST00000150323.1	antisense	chr4:107810808-107823010
chr4	107953467	107953944	-	RMER17C	LTR	ERVK	chr4	107953931	107953933	+	ENSMUST00000145831.1,ENSMUSG00000086713.1	4930407G08Rik	ENSMUSG00000086713.1	ENSMUST00000145831.1	lincRNA	chr4:107953932-107960721
chr4	107953920	107954142	+	RLTR15	LTR	ERVK	chr4	107953931	107953933	+	ENSMUST00000145831.1,ENSMUSG00000086713.1	4930407G08Rik	ENSMUSG00000086713.1	ENSMUST00000145831.1	lincRNA	chr4:107953932-107960721
chr4	108041696	108041800	-	U6	snRNA	snRNA	chr4	108041799	108041801	-	ENSMUST00000158426.1,ENSMUSG00000089051.1	Gm23354	ENSMUSG00000089051.1	ENSMUST00000158426.1	snRNA	chr4:108041697-108041800
chr4	108144834	108145188	-	MTD	LTR	ERVL-MaLR	chr4	108144993	108144995	-	ENSMUST00000143340.1,ENSMUSG00000028603.15	Scp2	ENSMUSG00000028603.15	ENSMUST00000143340.1	protein_coding	chr4:108091313-108144994
chr4	108144834	108145188	-	MTD	LTR	ERVL-MaLR	chr4	108144997	108144999	-	ENSMUST00000130776.1,ENSMUSG00000028603.15	Scp2	ENSMUSG00000028603.15	ENSMUST00000130776.1	protein_coding	chr4:108102309-108144998
chr4	108169974	108170178	-	MIRb	SINE	MIR	chr4	108170142	108170144	+	ENSMUST00000133049.8,ENSMUSG00000028601.18	Echdc2	ENSMUSG00000028601.18	ENSMUST00000133049.8	protein_coding	chr4:108170143-108179307
chr4	108169974	108170178	-	MIRb	SINE	MIR	chr4	108170153	108170155	+	ENSMUST00000123280.7,ENSMUSG00000028601.18	Echdc2	ENSMUSG00000028601.18	ENSMUST00000123280.7	protein_coding	chr4:108170154-108173851
chr4	108301093	108301261	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr4	108301095	108301097	-	ENSMUST00000043616.6,ENSMUSG00000034636.9	Zyg11b	ENSMUSG00000034636.9	ENSMUST00000043616.6	protein_coding	chr4:108229724-108301096
chr4	108466943	108467050	-	U6	snRNA	snRNA	chr4	108467049	108467051	-	ENSMUST00000179791.1,ENSMUSG00000095361.1	Gm24967	ENSMUSG00000095361.1	ENSMUST00000179791.1	snRNA	chr4:108466944-108467050
chr4	108467050	108467136	-	L1MB7	LINE	L1	chr4	108467049	108467051	-	ENSMUST00000179791.1,ENSMUSG00000095361.1	Gm24967	ENSMUSG00000095361.1	ENSMUST00000179791.1	snRNA	chr4:108466944-108467050
chr4	108513736	108513919	-	B3	SINE	B2	chr4	108513780	108513782	+	ENSMUST00000142835.1,ENSMUSG00000085093.1	Gm12737	ENSMUSG00000085093.1	ENSMUST00000142835.1	sense_intronic	chr4:108513781-108516817
chr4	108537490	108537597	-	U6	snRNA	snRNA	chr4	108537596	108537598	-	ENSMUST00000122644.1,ENSMUSG00000084593.1	Gm22345	ENSMUSG00000084593.1	ENSMUST00000122644.1	snRNA	chr4:108537491-108537597
chr4	108567025	108567048	+	(C)n	Simple_repeat	Simple_repeat	chr4	108567026	108567028	-	ENSMUST00000132951.1,ENSMUSG00000063800.5	Prpf38a	ENSMUSG00000063800.5	ENSMUST00000132951.1	protein_coding	chr4:108563172-108567027
chr4	108834634	108834655	+	(A)n	Simple_repeat	Simple_repeat	chr4	108834634	108834636	+	ENSMUST00000147581.1,ENSMUSG00000028567.8	Txndc12	ENSMUSG00000028567.8	ENSMUST00000147581.1	protein_coding	chr4:108834635-108846472
chr4	108857483	108857745	-	L2a	LINE	L2	chr4	108857491	108857493	+	ENSMUST00000154017.1,ENSMUSG00000028567.8	Txndc12	ENSMUSG00000028567.8	ENSMUST00000154017.1	protein_coding	chr4:108857492-108859282
chr4	108998610	108998709	-	U6	snRNA	snRNA	chr4	108998705	108998707	-	ENSMUST00000157660.1,ENSMUSG00000088285.1	Gm23589	ENSMUSG00000088285.1	ENSMUST00000157660.1	snRNA	chr4:108998602-108998706
chr4	109000744	109000791	+	GA-rich	Low_complexity	Low_complexity	chr4	109000769	109000771	+	ENSMUST00000106644.8,ENSMUSG00000053510.12	Nrd1	ENSMUSG00000053510.12	ENSMUST00000106644.8	protein_coding	chr4:109000770-109061161
chr4	109046259	109046369	+	PB1D9	SINE	Alu	chr4	109046309	109046311	+	ENSMUST00000148444.1,ENSMUSG00000053510.12	Nrd1	ENSMUSG00000053510.12	ENSMUST00000148444.1	protein_coding	chr4:109046310-109050900
chr4	109088725	109088789	+	ID4_	SINE	ID	chr4	109088778	109088780	-	ENSMUST00000160895.1,ENSMUSG00000028559.17	Osbpl9	ENSMUSG00000028559.17	ENSMUST00000160895.1	protein_coding	chr4:109086402-109088779
chr4	109234327	109234602	+	B4	SINE	B4	chr4	109234484	109234486	+	ENSMUST00000106629.7,ENSMUSG00000028558.14	Calr4	ENSMUSG00000028558.14	ENSMUST00000106629.7	protein_coding	chr4:109234485-109254251
chr4	109234948	109235540	+	Tigger20a	DNA	TcMar-Tigger	chr4	109235261	109235263	+	ENSMUST00000106631.8,ENSMUSG00000028558.14	Calr4	ENSMUSG00000028558.14	ENSMUST00000106631.8	protein_coding	chr4:109235262-109254571
chr4	109234948	109235540	+	Tigger20a	DNA	TcMar-Tigger	chr4	109235412	109235414	+	ENSMUST00000106628.7,ENSMUSG00000028558.14	Calr4	ENSMUSG00000028558.14	ENSMUST00000106628.7	protein_coding	chr4:109235413-109254345
chr4	109280248	109280273	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	109280267	109280269	+	ENSMUST00000102729.9,ENSMUSG00000028552.13	Eps15	ENSMUSG00000028552.13	ENSMUST00000102729.9	protein_coding	chr4:109280268-109387817
chr4	109406510	109406660	+	MIRb	SINE	MIR	chr4	109406622	109406624	+	ENSMUST00000124209.7,ENSMUSG00000028555.15	Ttc39a	ENSMUSG00000028555.15	ENSMUST00000124209.7	protein_coding	chr4:109406623-109428134
chr4	109407079	109407115	+	GC_rich	Low_complexity	Low_complexity	chr4	109407086	109407088	+	ENSMUST00000064129.13,ENSMUSG00000028555.15	Ttc39a	ENSMUSG00000028555.15	ENSMUST00000064129.13	protein_coding	chr4:109407087-109444745
chr4	109407079	109407115	+	GC_rich	Low_complexity	Low_complexity	chr4	109407109	109407111	+	ENSMUST00000106619.7,ENSMUSG00000028555.15	Ttc39a	ENSMUSG00000028555.15	ENSMUST00000106619.7	protein_coding	chr4:109407110-109424238
chr4	109531145	109531267	+	MLT1J1	LTR	ERVL-MaLR	chr4	109531203	109531205	-	ENSMUST00000082306.7,ENSMUSG00000060491.14	4930522H14Rik	ENSMUSG00000060491.14	ENSMUST00000082306.7	protein_coding	chr4:109505365-109531204
chr4	111415052	111415090	+	GC_rich	Low_complexity	Low_complexity	chr4	111415087	111415089	+	ENSMUST00000129760.7,ENSMUSG00000028545.13	Bend5	ENSMUSG00000028545.13	ENSMUST00000129760.7	protein_coding	chr4:111415088-111459920
chr4	111925037	111925241	-	L1_Mus2	LINE	L1	chr4	111925084	111925086	+	ENSMUST00000129547.1,ENSMUSG00000078599.9	Skint8	ENSMUSG00000078599.9	ENSMUST00000129547.1	protein_coding	chr4:111925085-111928845
chr4	111988713	111988958	-	7SK	RNA	RNA	chr4	111988957	111988959	-	ENSMUST00000122587.1,ENSMUSG00000084536.1	Gm25844	ENSMUSG00000084536.1	ENSMUST00000122587.1	misc_RNA	chr4:111988650-111988958
chr4	111988958	111990060	+	L1_Mus1	LINE	L1	chr4	111988957	111988959	-	ENSMUST00000122587.1,ENSMUSG00000084536.1	Gm25844	ENSMUSG00000084536.1	ENSMUST00000122587.1	misc_RNA	chr4:111988650-111988958
chr4	112071829	112072126	-	L1_Mus4	LINE	L1	chr4	112072015	112072017	+	ENSMUST00000106565.7,ENSMUSG00000055960.12	Skint4	ENSMUSG00000055960.12	ENSMUST00000106565.7	protein_coding	chr4:112072016-112167386
chr4	112590771	112590878	-	U6	snRNA	snRNA	chr4	112590877	112590879	-	ENSMUST00000083384.1,ENSMUSG00000096564.1	Gm24099	ENSMUSG00000096564.1	ENSMUST00000083384.1	snRNA	chr4:112590772-112590878
chr4	112923378	112923865	+	MT2_Mm	LTR	ERVL	chr4	112923695	112923697	+	ENSMUST00000134494.1,ENSMUSG00000085878.1	Gm12823	ENSMUSG00000085878.1	ENSMUST00000134494.1	antisense	chr4:112923696-112945317
chr4	114987964	114988055	+	HY1	scRNA	scRNA	chr4	114987963	114987965	+	ENSMUST00000083113.1,ENSMUSG00000065047.1	Gm24045	ENSMUSG00000065047.1	ENSMUST00000083113.1	misc_RNA	chr4:114987964-114988061
chr4	115925533	115925723	-	B2_Mm2	SINE	B2	chr4	115925637	115925639	-	ENSMUST00000064806.12,ENSMUSG00000028707.15	Dmbx1	ENSMUSG00000028707.15	ENSMUST00000064806.12	protein_coding	chr4:115915119-115925638
chr4	116000041	116000115	-	L3b	LINE	CR1	chr4	116000067	116000069	-	ENSMUST00000133225.1,ENSMUSG00000034171.13	Faah	ENSMUSG00000034171.13	ENSMUST00000133225.1	protein_coding	chr4:115998306-116000068
chr4	116046911	116046972	+	L2a	LINE	L2	chr4	116046959	116046961	-	ENSMUST00000136655.2,ENSMUSG00000028706.14	Nsun4	ENSMUSG00000028706.14	ENSMUST00000136655.2	protein_coding	chr4:116040069-116046960
chr4	116049289	116049425	+	MT2B2	LTR	ERVL	chr4	116049395	116049397	-	ENSMUST00000151720.1,ENSMUSG00000028706.14	Nsun4	ENSMUSG00000028706.14	ENSMUST00000151720.1	protein_coding	chr4:116048460-116049396
chr4	116049317	116049429	+	ID_B1	SINE	B4	chr4	116049395	116049397	-	ENSMUST00000151720.1,ENSMUSG00000028706.14	Nsun4	ENSMUSG00000028706.14	ENSMUST00000151720.1	protein_coding	chr4:116048460-116049396
chr4	116053339	116053448	+	G-rich	Low_complexity	Low_complexity	chr4	116053379	116053381	-	ENSMUST00000165493.7,ENSMUSG00000028706.14	Nsun4	ENSMUSG00000028706.14	ENSMUST00000165493.7	protein_coding	chr4:116033907-116053380
chr4	116112766	116112903	-	B1_Mus2	SINE	Alu	chr4	116112796	116112798	-	ENSMUST00000138320.1,ENSMUSG00000028702.15	Rad54l	ENSMUSG00000028702.15	ENSMUST00000138320.1	protein_coding	chr4:116111300-116112797
chr4	116144587	116144610	+	GC_rich	Low_complexity	Low_complexity	chr4	116144608	116144610	-	ENSMUST00000030469.4,ENSMUSG00000028701.4	Lurap1	ENSMUSG00000028701.4	ENSMUST00000030469.4	protein_coding	chr4:116132406-116144609
chr4	116150493	116150518	+	GC_rich	Low_complexity	Low_complexity	chr4	116150517	116150519	+	ENSMUST00000106498.7,ENSMUSG00000028700.14	Pomgnt1	ENSMUSG00000028700.14	ENSMUST00000106498.7	protein_coding	chr4:116150518-116159844
chr4	116464131	116464269	+	C-rich	Low_complexity	Low_complexity	chr4	116464182	116464184	-	ENSMUST00000106486.7,ENSMUSG00000003810.12	Mast2	ENSMUSG00000003810.12	ENSMUST00000106486.7	protein_coding	chr4:116306763-116464183
chr4	116464131	116464269	+	C-rich	Low_complexity	Low_complexity	chr4	116464182	116464184	-	ENSMUST00000106485.7,ENSMUSG00000003810.12	Mast2	ENSMUSG00000003810.12	ENSMUST00000106485.7	protein_coding	chr4:116306763-116464183
chr4	116551583	116551911	-	ORR1A4	LTR	ERVL-MaLR	chr4	116551739	116551741	+	ENSMUST00000138426.1,ENSMUSG00000087299.1	Gm12953	ENSMUSG00000087299.1	ENSMUST00000138426.1	antisense	chr4:116551740-116552627
chr4	116674152	116674262	+	U6	snRNA	snRNA	chr4	116674152	116674154	+	ENSMUST00000083251.1,ENSMUSG00000065185.1	Gm25137	ENSMUSG00000065185.1	ENSMUST00000083251.1	snRNA	chr4:116674153-116674262
chr4	116904636	116904735	+	U6	snRNA	snRNA	chr4	116904636	116904638	+	ENSMUST00000158220.1,ENSMUSG00000088845.1	Gm26355	ENSMUSG00000088845.1	ENSMUST00000158220.1	snRNA	chr4:116904637-116904741
chr4	116914428	116915231	+	L1MEc	LINE	L1	chr4	116915226	116915228	+	ENSMUST00000158277.1,ENSMUSG00000088902.1	Gm25435	ENSMUSG00000088902.1	ENSMUST00000158277.1	misc_RNA	chr4:116915227-116915493
chr4	116922383	116922490	-	U6	snRNA	snRNA	chr4	116922489	116922491	-	ENSMUST00000178290.1,ENSMUSG00000095805.1	Gm22092	ENSMUSG00000095805.1	ENSMUST00000178290.1	snRNA	chr4:116922384-116922490
chr4	116922490	116923667	-	L1_Mur1	LINE	L1	chr4	116922489	116922491	-	ENSMUST00000178290.1,ENSMUSG00000095805.1	Gm22092	ENSMUSG00000095805.1	ENSMUST00000178290.1	snRNA	chr4:116922384-116922490
chr4	117027210	117027309	+	U6	snRNA	snRNA	chr4	117027210	117027212	+	ENSMUST00000157724.1,ENSMUSG00000088349.1	Gm22335	ENSMUSG00000088349.1	ENSMUST00000157724.1	snRNA	chr4:117027211-117027309
chr4	117067356	117067553	+	B2_Mm2	SINE	B2	chr4	117067462	117067464	+	ENSMUST00000155181.1,ENSMUSG00000028683.14	Eif2b3	ENSMUSG00000028683.14	ENSMUST00000155181.1	protein_coding	chr4:117067463-117087306
chr4	117113336	117113512	+	B2_Mm2	SINE	B2	chr4	117113423	117113425	+	ENSMUST00000123226.1,ENSMUSG00000028681.11	Ptch2	ENSMUSG00000028681.11	ENSMUST00000123226.1	protein_coding	chr4:117113424-117116101
chr4	117121746	117121878	-	B1_Mus2	SINE	Alu	chr4	117121876	117121878	-	ENSMUST00000181979.1,ENSMUSG00000073771.11	Btbd19	ENSMUSG00000073771.11	ENSMUST00000181979.1	protein_coding	chr4:117120729-117121877
chr4	117121797	117121979	-	MT2B	LTR	ERVL	chr4	117121876	117121878	-	ENSMUST00000181979.1,ENSMUSG00000073771.11	Btbd19	ENSMUSG00000073771.11	ENSMUST00000181979.1	protein_coding	chr4:117120729-117121877
chr4	117133778	117133826	+	GC_rich	Low_complexity	Low_complexity	chr4	117133798	117133800	-	ENSMUST00000147730.1,ENSMUSG00000028680.14	Plk3	ENSMUSG00000028680.14	ENSMUST00000147730.1	protein_coding	chr4:117128657-117133799
chr4	117158305	117158452	+	B1_Mus2	SINE	Alu	chr4	117158432	117158434	-	ENSMUST00000174941.1,ENSMUSG00000095209.1	Gm22398	ENSMUSG00000095209.1	ENSMUST00000174941.1	miRNA	chr4:117158309-117158433
chr4	117189941	117190058	+	U5	snRNA	snRNA	chr4	117189941	117189943	+	ENSMUST00000093716.2,ENSMUSG00000095676.1	Gm25099	ENSMUSG00000095676.1	ENSMUST00000093716.2	snRNA	chr4:117189942-117190057
chr4	117202527	117202644	+	U5	snRNA	snRNA	chr4	117202527	117202529	+	ENSMUST00000180137.1,ENSMUSG00000094405.1	Gm23143	ENSMUSG00000094405.1	ENSMUST00000180137.1	snRNA	chr4:117202528-117202643
chr4	117210843	117210960	+	U5	snRNA	snRNA	chr4	117210843	117210845	+	ENSMUST00000179427.1,ENSMUSG00000096280.1	Gm23287	ENSMUSG00000096280.1	ENSMUST00000179427.1	snRNA	chr4:117210844-117210959
chr4	117265370	117265529	+	RSINE1	SINE	B4	chr4	117265370	117265372	+	ENSMUST00000145836.1,ENSMUSG00000048772.15	Tmem53	ENSMUSG00000048772.15	ENSMUST00000145836.1	protein_coding	chr4:117265371-117268582
chr4	117273645	117273801	+	B1_Mur4	SINE	Alu	chr4	117273782	117273784	-	ENSMUST00000223371.1,ENSMUSG00000028677.19	Rnf220	ENSMUSG00000028677.19	ENSMUST00000223371.1	protein_coding	chr4:117272260-117273783
chr4	117289281	117289309	+	GC_rich	Low_complexity	Low_complexity	chr4	117289284	117289286	-	ENSMUST00000223182.1,ENSMUSG00000028677.19	Rnf220	ENSMUSG00000028677.19	ENSMUST00000223182.1	protein_coding	chr4:117278007-117289285
chr4	117570012	117570268	+	Eulor9A	DNA	DNA	chr4	117570133	117570135	+	ENSMUST00000157182.1,ENSMUSG00000087807.1	Gm25559	ENSMUSG00000087807.1	ENSMUST00000157182.1	miRNA	chr4:117570134-117570207
chr4	117700133	117700299	+	MMVL30-int	LTR	ERV1	chr4	117700187	117700189	+	ENSMUST00000156081.1,ENSMUSG00000086320.1	Gm12840	ENSMUSG00000086320.1	ENSMUST00000156081.1	lincRNA	chr4:117700188-117700923
chr4	117849117	117849215	+	RLTR20A4	LTR	ERVK	chr4	117849192	117849194	+	ENSMUST00000132043.8,ENSMUSG00000028542.17	Slc6a9	ENSMUSG00000028542.17	ENSMUST00000132043.8	protein_coding	chr4:117849193-117864004
chr4	117849117	117849215	+	RLTR20A4	LTR	ERVK	chr4	117849198	117849200	+	ENSMUST00000169990.7,ENSMUSG00000028542.17	Slc6a9	ENSMUSG00000028542.17	ENSMUST00000169990.7	protein_coding	chr4:117849199-117864004
chr4	117871244	117871406	+	MIR	SINE	MIR	chr4	117871294	117871296	-	ENSMUST00000154439.7,ENSMUSG00000078588.10	Ccdc24	ENSMUSG00000078588.10	ENSMUST00000154439.7	protein_coding	chr4:117868749-117871295
chr4	117871244	117871406	+	MIR	SINE	MIR	chr4	117871328	117871330	-	ENSMUST00000130758.7,ENSMUSG00000078588.10	Ccdc24	ENSMUSG00000078588.10	ENSMUST00000130758.7	protein_coding	chr4:117869765-117871329
chr4	117883483	117883565	+	C-rich	Low_complexity	Low_complexity	chr4	117883486	117883488	-	ENSMUST00000030266.11,ENSMUSG00000028541.14	B4galt2	ENSMUSG00000028541.14	ENSMUST00000030266.11	protein_coding	chr4:117873131-117883487
chr4	117968127	117968703	-	L1MC5	LINE	L1	chr4	117968447	117968449	-	ENSMUST00000126336.1,ENSMUSG00000028538.12	St3gal3	ENSMUSG00000028538.12	ENSMUST00000126336.1	protein_coding	chr4:117940446-117968448
chr4	118291243	118291368	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	118291273	118291275	-	ENSMUST00000222620.1,ENSMUSG00000033295.14	Ptprf	ENSMUSG00000033295.14	ENSMUST00000222620.1	protein_coding	chr4:118236373-118291274
chr4	118291369	118291459	+	C-rich	Low_complexity	Low_complexity	chr4	118291404	118291406	-	ENSMUST00000049074.12,ENSMUSG00000033295.14	Ptprf	ENSMUSG00000033295.14	ENSMUST00000049074.12	protein_coding	chr4:118208213-118291405
chr4	118361296	118361331	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr4	118361321	118361323	+	ENSMUST00000132882.1,ENSMUSG00000006395.16	Hyi	ENSMUSG00000006395.16	ENSMUST00000132882.1	polymorphic_pseudogene	chr4:118361322-118362495
chr4	118664300	118664579	-	L1MEg	LINE	L1	chr4	118664392	118664394	+	ENSMUST00000217013.1,ENSMUSG00000043698.9	Olfr62	ENSMUSG00000043698.9	ENSMUST00000217013.1	protein_coding	chr4:118664393-118668042
chr4	118809893	118810068	+	B3	SINE	B2	chr4	118809943	118809945	-	ENSMUST00000084313.4,ENSMUSG00000066061.6	Olfr1335	ENSMUSG00000066061.6	ENSMUST00000084313.4	protein_coding	chr4:118808797-118809944
chr4	118809893	118810068	+	B3	SINE	B2	chr4	118809943	118809945	-	ENSMUST00000219094.1,ENSMUSG00000066061.6	Olfr1335	ENSMUSG00000066061.6	ENSMUST00000219094.1	protein_coding	chr4:118808797-118809944
chr4	118997108	118997506	-	RLTR44B	LTR	ERVK	chr4	118997197	118997199	-	ENSMUST00000137353.1,ENSMUSG00000087238.1	Gm12865	ENSMUSG00000087238.1	ENSMUST00000137353.1	lincRNA	chr4:118984058-118997198
chr4	119000428	119000535	+	RSINE1	SINE	B4	chr4	119000484	119000486	-	ENSMUST00000150754.1,ENSMUSG00000087464.1	Gm12862	ENSMUSG00000087464.1	ENSMUST00000150754.1	lincRNA	chr4:118999660-119000485
chr4	119129777	119129855	+	ID4	SINE	ID	chr4	119129778	119129780	+	ENSMUST00000157927.1,ENSMUSG00000088552.1	Mir1957a	ENSMUSG00000088552.1	ENSMUST00000157927.1	miRNA	chr4:119129779-119129844
chr4	119188613	119188814	+	B3	SINE	B2	chr4	119188746	119188748	-	ENSMUST00000133956.7,ENSMUSG00000028644.16	Ermap	ENSMUSG00000028644.16	ENSMUST00000133956.7	protein_coding	chr4:119185692-119188747
chr4	119492588	119492637	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	119492627	119492629	-	ENSMUST00000049994.7,ENSMUSG00000048899.8	Rimkla	ENSMUSG00000048899.8	ENSMUST00000049994.7	protein_coding	chr4:119465283-119492628
chr4	119527999	119528106	+	U6	snRNA	snRNA	chr4	119527999	119528001	+	ENSMUST00000178059.1,ENSMUSG00000094494.1	Rnu6-ps2	ENSMUSG00000094494.1	ENSMUST00000178059.1	snRNA	chr4:119528000-119528106
chr4	119536941	119537234	-	MT2B2	LTR	ERVL	chr4	119537003	119537005	+	ENSMUST00000176012.7,ENSMUSG00000032998.16	Foxj3	ENSMUSG00000032998.16	ENSMUST00000176012.7	protein_coding	chr4:119537004-119573617
chr4	119539695	119539721	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	119539697	119539699	+	ENSMUST00000138845.8,ENSMUSG00000032998.16	Foxj3	ENSMUSG00000032998.16	ENSMUST00000138845.8	protein_coding	chr4:119539698-119588547
chr4	119539695	119539721	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	119539706	119539708	+	ENSMUST00000131413.1,ENSMUSG00000032998.16	Foxj3	ENSMUSG00000032998.16	ENSMUST00000131413.1	protein_coding	chr4:119539707-119562910
chr4	119760861	119761451	+	Lx8	LINE	L1	chr4	119761244	119761246	+	ENSMUST00000125069.7,ENSMUSG00000028634.17	Hivep3	ENSMUSG00000028634.17	ENSMUST00000125069.7	protein_coding	chr4:119761245-119872717
chr4	120032729	120032792	+	GC_rich	Low_complexity	Low_complexity	chr4	120032765	120032767	+	ENSMUST00000227491.1,ENSMUSG00000028634.17	Hivep3	ENSMUSG00000028634.17	ENSMUST00000227491.1	protein_coding	chr4:120032766-120065063
chr4	120405271	120405298	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	120405280	120405282	+	ENSMUST00000134375.7,ENSMUSG00000000085.16	Scmh1	ENSMUSG00000000085.16	ENSMUST00000134375.7	protein_coding	chr4:120405281-120454515
chr4	120405423	120405444	+	GC_rich	Low_complexity	Low_complexity	chr4	120405427	120405429	+	ENSMUST00000132116.7,ENSMUSG00000000085.16	Scmh1	ENSMUSG00000000085.16	ENSMUST00000132116.7	protein_coding	chr4:120405428-120463084
chr4	120447012	120447157	-	MIR3	SINE	MIR	chr4	120447146	120447148	+	ENSMUST00000106301.7,ENSMUSG00000000085.16	Scmh1	ENSMUSG00000000085.16	ENSMUST00000106301.7	protein_coding	chr4:120447147-120530184
chr4	120503821	120504022	-	B4	SINE	B4	chr4	120503878	120503880	+	ENSMUST00000144555.7,ENSMUSG00000000085.16	Scmh1	ENSMUSG00000000085.16	ENSMUST00000144555.7	protein_coding	chr4:120503879-120530184
chr4	120831360	120831940	-	MT2B	LTR	ERVL	chr4	120831571	120831573	-	ENSMUST00000118902.7,ENSMUSG00000032897.17	Nfyc	ENSMUSG00000032897.17	ENSMUST00000118902.7	protein_coding	chr4:120757438-120831572
chr4	120837277	120837798	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr4	120837487	120837489	+	ENSMUST00000179354.1,ENSMUSG00000096876.1	Gm23936	ENSMUSG00000096876.1	ENSMUST00000179354.1	miRNA	chr4:120837488-120837597
chr4	120861739	120861992	-	MLT1O	LTR	ERVL-MaLR	chr4	120861776	120861778	+	ENSMUST00000106283.7,ENSMUSG00000032890.17	Rims3	ENSMUSG00000032890.17	ENSMUST00000106283.7	protein_coding	chr4:120861777-120896579
chr4	120903460	120903557	+	U6	snRNA	snRNA	chr4	120903459	120903461	+	ENSMUST00000158756.1,ENSMUSG00000089381.1	Gm24678	ENSMUSG00000089381.1	ENSMUST00000158756.1	snRNA	chr4:120903460-120903563
chr4	121052975	121053006	+	(CCCCCT)n	Simple_repeat	Simple_repeat	chr4	121052998	121053000	+	ENSMUST00000140119.1,ENSMUSG00000028626.5	Col9a2	ENSMUSG00000028626.5	ENSMUST00000140119.1	protein_coding	chr4:121052999-121054819
chr4	121077726	121077874	-	B1_Mus1	SINE	Alu	chr4	121077737	121077739	-	ENSMUST00000143768.1,ENSMUSG00000043207.10	Zmpste24	ENSMUSG00000043207.10	ENSMUST00000143768.1	protein_coding	chr4:121068132-121077738
chr4	121130060	121130135	+	RSINE1	SINE	B4	chr4	121130117	121130119	+	ENSMUST00000120003.1,ENSMUSG00000081305.1	Gm12879	ENSMUSG00000081305.1	ENSMUST00000120003.1	processed_pseudogene	chr4:121130118-121131299
chr4	121134656	121134885	+	7SK	RNA	RNA	chr4	121134656	121134658	+	ENSMUST00000082613.1,ENSMUSG00000064547.1	Gm22982	ENSMUSG00000064547.1	ENSMUST00000082613.1	misc_RNA	chr4:121134657-121134975
chr4	121379656	121379960	+	SRV_MM-int	LTR	ERVK	chr4	121379793	121379795	+	ENSMUST00000118684.1,ENSMUSG00000083941.1	Gm12889	ENSMUSG00000083941.1	ENSMUST00000118684.1	processed_pseudogene	chr4:121379794-121380034
chr4	121380462	121381166	+	SRV_MM-int	LTR	ERVK	chr4	121380594	121380596	+	ENSMUST00000122246.1,ENSMUSG00000083901.1	Gm12885	ENSMUSG00000083901.1	ENSMUST00000122246.1	processed_pseudogene	chr4:121380595-121380922
chr4	121381297	121382015	+	SRV_MM-int	LTR	ERVK	chr4	121381428	121381430	+	ENSMUST00000120371.1,ENSMUSG00000081465.1	Gm12884	ENSMUSG00000081465.1	ENSMUST00000120371.1	processed_pseudogene	chr4:121381429-121381753
chr4	121392840	121393028	+	B3	SINE	B2	chr4	121392991	121392993	+	ENSMUST00000117867.1,ENSMUSG00000081667.1	Gm12883	ENSMUSG00000081667.1	ENSMUST00000117867.1	unprocessed_pseudogene	chr4:121392992-121396557
chr4	121641383	121642028	+	SRV_MM-int	LTR	ERVK	chr4	121641445	121641447	+	ENSMUST00000118744.1,ENSMUSG00000083615.1	Gm12878	ENSMUSG00000083615.1	ENSMUST00000118744.1	processed_pseudogene	chr4:121641446-121641777
chr4	123282891	123282960	+	A-rich	Low_complexity	Low_complexity	chr4	123282910	123282912	+	ENSMUST00000080178.12,ENSMUSG00000011257.19	Pabpc4	ENSMUSG00000011257.19	ENSMUST00000080178.12	protein_coding	chr4:123282911-123298832
chr4	123297158	123297241	+	ID_B1	SINE	B4	chr4	123297179	123297181	+	ENSMUST00000146156.1,ENSMUSG00000011257.19	Pabpc4	ENSMUSG00000011257.19	ENSMUST00000146156.1	protein_coding	chr4:123297180-123298832
chr4	123490230	123490366	+	7SK	RNA	RNA	chr4	123490230	123490232	+	ENSMUST00000158963.1,ENSMUSG00000089588.1	Gm23548	ENSMUSG00000089588.1	ENSMUST00000158963.1	misc_RNA	chr4:123490231-123490336
chr4	123665875	123665928	+	B4A	SINE	B4	chr4	123665880	123665882	+	ENSMUST00000140510.1,ENSMUSG00000087307.1	Gm12925	ENSMUSG00000087307.1	ENSMUST00000140510.1	antisense	chr4:123665881-123668727
chr4	123665881	123665984	+	PB1D7	SINE	Alu	chr4	123665880	123665882	+	ENSMUST00000140510.1,ENSMUSG00000087307.1	Gm12925	ENSMUSG00000087307.1	ENSMUST00000140510.1	antisense	chr4:123665881-123668727
chr4	123684303	123684375	+	MIRb	SINE	MIR	chr4	123684359	123684361	-	ENSMUST00000097897.10,ENSMUSG00000028649.18	Macf1	ENSMUSG00000028649.18	ENSMUST00000097897.10	protein_coding	chr4:123349633-123684360
chr4	123684303	123684375	+	MIRb	SINE	MIR	chr4	123684359	123684361	-	ENSMUST00000082108.11,ENSMUSG00000028649.18	Macf1	ENSMUSG00000028649.18	ENSMUST00000082108.11	protein_coding	chr4:123349716-123684360
chr4	123684303	123684375	+	MIRb	SINE	MIR	chr4	123684359	123684361	-	ENSMUST00000084301.11,ENSMUSG00000028649.18	Macf1	ENSMUSG00000028649.18	ENSMUST00000084301.11	protein_coding	chr4:123349718-123684360
chr4	123684303	123684375	+	MIRb	SINE	MIR	chr4	123684359	123684361	-	ENSMUST00000106224.7,ENSMUSG00000028649.18	Macf1	ENSMUSG00000028649.18	ENSMUST00000106224.7	protein_coding	chr4:123349720-123684360
chr4	123813239	123813449	-	B3	SINE	B2	chr4	123813334	123813336	+	ENSMUST00000148797.1,ENSMUSG00000043333.12	Rhbdl2	ENSMUSG00000043333.12	ENSMUST00000148797.1	protein_coding	chr4:123813335-123816299
chr4	123902269	123902439	+	B2_Mm1t	SINE	B2	chr4	123902421	123902423	+	ENSMUST00000121015.1,ENSMUSG00000080993.1	Gm12903	ENSMUSG00000080993.1	ENSMUST00000121015.1	processed_pseudogene	chr4:123902422-123902965
chr4	123917430	123917485	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	123917445	123917447	+	ENSMUST00000030399.6,ENSMUSG00000028646.16	Rragc	ENSMUSG00000028646.16	ENSMUST00000030399.6	protein_coding	chr4:123917446-123936997
chr4	123917430	123917485	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	123917473	123917475	+	ENSMUST00000155757.7,ENSMUSG00000028646.16	Rragc	ENSMUSG00000028646.16	ENSMUST00000155757.7	protein_coding	chr4:123917474-123936993
chr4	124332436	124332764	-	MTEb	LTR	ERVL-MaLR	chr4	124332507	124332509	-	ENSMUST00000154878.1,ENSMUSG00000086978.1	4933435F18Rik	ENSMUSG00000086978.1	ENSMUST00000154878.1	lincRNA	chr4:124326308-124332508
chr4	124332436	124332764	-	MTEb	LTR	ERVL-MaLR	chr4	124332466	124332468	-	ENSMUST00000125578.1,ENSMUSG00000086978.1	4933435F18Rik	ENSMUSG00000086978.1	ENSMUST00000125578.1	lincRNA	chr4:124331406-124332467
chr4	124697505	124697607	-	U6	snRNA	snRNA	chr4	124697606	124697608	-	ENSMUST00000157442.1,ENSMUSG00000088067.1	Gm24480	ENSMUSG00000088067.1	ENSMUST00000157442.1	snRNA	chr4:124697505-124697607
chr4	124735633	124736152	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr4	124735838	124735840	+	ENSMUST00000103849.1,ENSMUSG00000096411.1	Gm24721	ENSMUSG00000096411.1	ENSMUST00000103849.1	miRNA	chr4:124735839-124735948
chr4	124769234	124769392	-	MIRc	SINE	MIR	chr4	124769327	124769329	+	ENSMUST00000142652.1,ENSMUSG00000028894.18	Inpp5b	ENSMUSG00000028894.18	ENSMUST00000142652.1	protein_coding	chr4:124769328-124782467
chr4	124851170	124851199	+	GC_rich	Low_complexity	Low_complexity	chr4	124851195	124851197	-	ENSMUST00000185036.1,ENSMUSG00000078570.10	1110065P20Rik	ENSMUSG00000078570.10	ENSMUST00000185036.1	protein_coding	chr4:124849490-124851196
chr4	124899226	124899481	-	L1M3	LINE	L1	chr4	124899401	124899403	+	ENSMUST00000151791.1,ENSMUSG00000028876.7	Epha10	ENSMUSG00000028876.7	ENSMUST00000151791.1	protein_coding	chr4:124899402-124902709
chr4	124986402	124986431	+	GC_rich	Low_complexity	Low_complexity	chr4	124986429	124986431	+	ENSMUST00000030687.7,ENSMUSG00000028871.7	Rspo1	ENSMUSG00000028871.7	ENSMUST00000030687.7	protein_coding	chr4:124986430-125009099
chr4	125053128	125053202	-	ID4	SINE	ID	chr4	125053150	125053152	+	ENSMUST00000147550.1,ENSMUSG00000028869.13	Gnl2	ENSMUSG00000028869.13	ENSMUST00000147550.1	protein_coding	chr4:125053151-125055380
chr4	126070256	126070273	+	B4A	SINE	B4	chr4	126070258	126070260	-	ENSMUST00000116058.2,ENSMUSG00000079942.5	Rpl28-ps3	ENSMUSG00000079942.5	ENSMUST00000116058.2	processed_pseudogene	chr4:126069867-126070259
chr4	126168414	126168527	-	B1_Mus1	SINE	Alu	chr4	126168448	126168450	-	ENSMUST00000140390.1,ENSMUSG00000043962.16	Thrap3	ENSMUSG00000043962.16	ENSMUST00000140390.1	protein_coding	chr4:126164086-126168449
chr4	126178469	126178551	+	CT-rich	Low_complexity	Low_complexity	chr4	126178525	126178527	-	ENSMUST00000163306.1,ENSMUSG00000043962.16	Thrap3	ENSMUSG00000043962.16	ENSMUST00000163306.1	protein_coding	chr4:126175366-126178526
chr4	126201039	126201161	+	B1F2	SINE	Alu	chr4	126201116	126201118	-	ENSMUST00000136157.7,ENSMUSG00000043962.16	Thrap3	ENSMUSG00000043962.16	ENSMUST00000136157.7	protein_coding	chr4:126180791-126201117
chr4	126201068	126201162	+	ID_B1	SINE	B4	chr4	126201116	126201118	-	ENSMUST00000136157.7,ENSMUSG00000043962.16	Thrap3	ENSMUSG00000043962.16	ENSMUST00000136157.7	protein_coding	chr4:126180791-126201117
chr4	126201210	126201279	-	U6	snRNA	snRNA	chr4	126201276	126201278	-	ENSMUST00000122555.1,ENSMUSG00000084504.1	Gm25323	ENSMUSG00000084504.1	ENSMUST00000122555.1	snRNA	chr4:126201175-126201277
chr4	126286748	126286812	+	GC_rich	Low_complexity	Low_complexity	chr4	126286792	126286794	+	ENSMUST00000070132.6,ENSMUSG00000056174.8	Col8a2	ENSMUSG00000056174.8	ENSMUST00000070132.6	protein_coding	chr4:126286793-126314330
chr4	126321614	126321714	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	126321702	126321704	-	ENSMUST00000102617.4,ENSMUSG00000042558.16	Adprhl2	ENSMUSG00000042558.16	ENSMUST00000102617.4	protein_coding	chr4:126316047-126321703
chr4	126468544	126468588	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	126468582	126468584	-	ENSMUST00000097888.9,ENSMUSG00000041530.16	Ago1	ENSMUSG00000041530.16	ENSMUST00000097888.9	protein_coding	chr4:126435012-126468583
chr4	126477295	126477372	+	B2_Mm1a	SINE	B2	chr4	126477298	126477300	-	ENSMUST00000117115.1,ENSMUSG00000082381.1	Gm12928	ENSMUSG00000082381.1	ENSMUST00000117115.1	processed_pseudogene	chr4:126476727-126477299
chr4	126533462	126533497	+	GC_rich	Low_complexity	Low_complexity	chr4	126533471	126533473	-	ENSMUST00000084289.4,ENSMUSG00000042500.11	Ago4	ENSMUSG00000042500.11	ENSMUST00000084289.4	protein_coding	chr4:126489541-126533472
chr4	126967872	126967921	+	GC_rich	Low_complexity	Low_complexity	chr4	126967898	126967900	-	ENSMUST00000154821.1,ENSMUSG00000042446.16	Zmym4	ENSMUSG00000042446.16	ENSMUST00000154821.1	protein_coding	chr4:126925560-126967899
chr4	127057505	127057595	+	MIR3	SINE	MIR	chr4	127057572	127057574	-	ENSMUST00000140605.1,ENSMUSG00000043872.14	Zmym1	ENSMUSG00000043872.14	ENSMUST00000140605.1	protein_coding	chr4:127054288-127057573
chr4	127104023	127104053	+	(TG)n	Simple_repeat	Simple_repeat	chr4	127104033	127104035	+	ENSMUST00000125160.1,ENSMUSG00000042408.13	Zmym6	ENSMUSG00000042408.13	ENSMUST00000125160.1	protein_coding	chr4:127104034-127107522
chr4	127108470	127108571	-	U6	snRNA	snRNA	chr4	127108570	127108572	-	ENSMUST00000158357.1,ENSMUSG00000088982.1	Gm25600	ENSMUSG00000088982.1	ENSMUST00000158357.1	snRNA	chr4:127108466-127108571
chr4	127284732	127284833	-	U6	snRNA	snRNA	chr4	127284832	127284834	-	ENSMUST00000157362.1,ENSMUSG00000087987.1	Gm22221	ENSMUSG00000087987.1	ENSMUST00000157362.1	snRNA	chr4:127284731-127284833
chr4	127330727	127330875	+	MIRb	SINE	MIR	chr4	127330843	127330845	-	ENSMUST00000046532.3,ENSMUSG00000042367.12	Gjb3	ENSMUSG00000042367.12	ENSMUST00000046532.3	protein_coding	chr4:127325235-127330844
chr4	127812153	127812200	+	ORR1C2	LTR	ERVL-MaLR	chr4	127812172	127812174	-	ENSMUST00000141892.1,ENSMUSG00000087510.1	1700112K13Rik	ENSMUSG00000087510.1	ENSMUST00000141892.1	lincRNA	chr4:127810638-127812173
chr4	128547931	128547958	+	(CAGA)n	Simple_repeat	Simple_repeat	chr4	128547935	128547937	+	ENSMUST00000139561.1,ENSMUSG00000028804.20	Csmd2	ENSMUSG00000028804.20	ENSMUST00000139561.1	protein_coding	chr4:128547936-128552733
chr4	128727662	128727691	+	GC_rich	Low_complexity	Low_complexity	chr4	128727681	128727683	+	ENSMUST00000138445.1,ENSMUSG00000028796.17	Phc2	ENSMUSG00000028796.17	ENSMUST00000138445.1	protein_coding	chr4:128727682-128748217
chr4	128794842	128794985	+	L2c	LINE	L2	chr4	128794887	128794889	-	ENSMUST00000071108.13,ENSMUSG00000028799.15	Zfp362	ENSMUSG00000028799.15	ENSMUST00000071108.13	protein_coding	chr4:128773104-128794888
chr4	128846186	128846325	-	RSINE1	SINE	B4	chr4	128846196	128846198	+	ENSMUST00000138291.1,ENSMUSG00000085701.1	Gm12968	ENSMUSG00000085701.1	ENSMUST00000138291.1	lincRNA	chr4:128846197-128873698
chr4	128962363	128962516	+	C-rich	Low_complexity	Low_complexity	chr4	128962419	128962421	-	ENSMUST00000119354.7,ENSMUSG00000028789.16	Azin2	ENSMUSG00000028789.16	ENSMUST00000119354.7	protein_coding	chr4:128930233-128962420
chr4	128962363	128962516	+	C-rich	Low_complexity	Low_complexity	chr4	128962427	128962429	-	ENSMUST00000106068.7,ENSMUSG00000028789.16	Azin2	ENSMUSG00000028789.16	ENSMUST00000106068.7	protein_coding	chr4:128932022-128962428
chr4	128962363	128962516	+	C-rich	Low_complexity	Low_complexity	chr4	128962438	128962440	-	ENSMUST00000030581.9,ENSMUSG00000028789.16	Azin2	ENSMUSG00000028789.16	ENSMUST00000030581.9	protein_coding	chr4:128932022-128962439
chr4	128962363	128962516	+	C-rich	Low_complexity	Low_complexity	chr4	128962438	128962440	-	ENSMUST00000128820.7,ENSMUSG00000028789.16	Azin2	ENSMUSG00000028789.16	ENSMUST00000128820.7	protein_coding	chr4:128945697-128962439
chr4	128962363	128962516	+	C-rich	Low_complexity	Low_complexity	chr4	128962441	128962443	-	ENSMUST00000143912.7,ENSMUSG00000028789.16	Azin2	ENSMUSG00000028789.16	ENSMUST00000143912.7	protein_coding	chr4:128947237-128962442
chr4	128962363	128962516	+	C-rich	Low_complexity	Low_complexity	chr4	128962427	128962429	-	ENSMUST00000156739.1,ENSMUSG00000028789.16	Azin2	ENSMUSG00000028789.16	ENSMUST00000156739.1	protein_coding	chr4:128960705-128962428
chr4	129058394	129058417	+	GC_rich	Low_complexity	Low_complexity	chr4	129058408	129058410	+	ENSMUST00000152565.7,ENSMUSG00000028793.15	Rnf19b	ENSMUSG00000028793.15	ENSMUST00000152565.7	protein_coding	chr4:129058409-129080549
chr4	129136990	129137044	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	129136998	129137000	+	ENSMUST00000102600.3,ENSMUSG00000001334.9	Fndc5	ENSMUSG00000001334.9	ENSMUST00000102600.3	protein_coding	chr4:129136999-129144593
chr4	129209511	129209566	+	L1MD	LINE	L1	chr4	129209537	129209539	+	ENSMUST00000146106.1,ENSMUSG00000028811.11	Yars	ENSMUSG00000028811.11	ENSMUST00000146106.1	protein_coding	chr4:129209538-129210852
chr4	129212239	129212363	+	B1_Mur4	SINE	Alu	chr4	129212243	129212245	+	ENSMUST00000148619.7,ENSMUSG00000028811.11	Yars	ENSMUSG00000028811.11	ENSMUST00000148619.7	protein_coding	chr4:129212244-129215726
chr4	129212630	129212808	-	B2_Mm1t	SINE	B2	chr4	129212695	129212697	+	ENSMUST00000137591.1,ENSMUSG00000028811.11	Yars	ENSMUSG00000028811.11	ENSMUST00000137591.1	protein_coding	chr4:129212696-129218663
chr4	129213695	129213793	+	PB1D10	SINE	Alu	chr4	129213761	129213763	+	ENSMUST00000147248.1,ENSMUSG00000028811.11	Yars	ENSMUSG00000028811.11	ENSMUST00000147248.1	protein_coding	chr4:129213762-129214934
chr4	129343855	129343992	-	B1_Mus2	SINE	Alu	chr4	129343939	129343941	+	ENSMUST00000140272.1,ENSMUSG00000057572.15	Zbtb8os	ENSMUSG00000057572.15	ENSMUST00000140272.1	protein_coding	chr4:129343940-129346930
chr4	129458350	129458487	+	U1	snRNA	snRNA	chr4	129458350	129458352	+	ENSMUST00000082679.1,ENSMUSG00000064613.1	Gm24621	ENSMUSG00000064613.1	ENSMUST00000082679.1	snRNA	chr4:129458351-129458490
chr4	129524375	129524567	-	B2_Mm1a	SINE	B2	chr4	129524541	129524543	-	ENSMUST00000132909.1,ENSMUSG00000028800.15	Hdac1	ENSMUSG00000028800.15	ENSMUST00000132909.1	protein_coding	chr4:129522826-129524542
chr4	129601974	129602140	+	URR1A	DNA	hAT-Charlie	chr4	129602009	129602011	+	ENSMUST00000172635.1,ENSMUSG00000028797.20	Tmem234	ENSMUSG00000028797.20	ENSMUST00000172635.1	protein_coding	chr4:129602010-129607330
chr4	129678790	129678890	+	MIR	SINE	MIR	chr4	129678889	129678891	-	ENSMUST00000154747.1,ENSMUSG00000053730.15	Tmem39b	ENSMUSG00000053730.15	ENSMUST00000154747.1	protein_coding	chr4:129676599-129678890
chr4	129696600	129696626	+	(CCCCCT)n	Simple_repeat	Simple_repeat	chr4	129696619	129696621	-	ENSMUST00000137640.2,ENSMUSG00000053730.15	Tmem39b	ENSMUSG00000053730.15	ENSMUST00000137640.2	protein_coding	chr4:129691968-129696620
chr4	129762308	129762455	+	B1_Mus1	SINE	Alu	chr4	129762435	129762437	-	ENSMUST00000183434.1,ENSMUSG00000099322.1	Gm28017	ENSMUSG00000099322.1	ENSMUST00000183434.1	miRNA	chr4:129762311-129762436
chr4	129820218	129820403	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	129820220	129820222	+	ENSMUST00000030578.13,ENSMUSG00000028788.14	Ptp4a2	ENSMUSG00000028788.14	ENSMUST00000030578.13	protein_coding	chr4:129820221-129849978
chr4	129855028	129855125	-	PB1D10	SINE	Alu	chr4	129855070	129855072	+	ENSMUST00000097869.4,ENSMUSG00000073753.4	Gm10571	ENSMUSG00000073753.4	ENSMUST00000097869.4	pseudogene	chr4:129855071-129856710
chr4	129895354	129895580	+	ORR1B1	LTR	ERVL-MaLR	chr4	129895572	129895574	+	ENSMUST00000083834.1,ENSMUSG00000065768.1	Gm23845	ENSMUSG00000065768.1	ENSMUST00000083834.1	snRNA	chr4:129895573-129895724
chr4	129906424	129906581	-	LTR81A	LTR	Gypsy	chr4	129906432	129906434	+	ENSMUST00000139190.1,ENSMUSG00000086369.7	E330017L17Rik	ENSMUSG00000086369.7	ENSMUST00000139190.1	lincRNA	chr4:129906433-129919787
chr4	130166526	130166651	-	ID_B1	SINE	B4	chr4	130166610	130166612	-	ENSMUST00000145000.2,ENSMUSG00000028776.14	Tinagl1	ENSMUSG00000028776.14	ENSMUST00000145000.2	protein_coding	chr4:130165604-130166611
chr4	130222256	130222433	-	RLTR26	LTR	ERVK	chr4	130222400	130222402	-	ENSMUST00000023884.6,ENSMUSG00000023120.9	Gm853	ENSMUSG00000023120.9	ENSMUST00000023884.6	protein_coding	chr4:130209109-130222401
chr4	130318677	130318874	+	MIRb	SINE	MIR	chr4	130318738	130318740	-	ENSMUST00000141615.1,ENSMUSG00000028772.19	Zcchc17	ENSMUSG00000028772.19	ENSMUST00000141615.1	protein_coding	chr4:130316279-130318739
chr4	130344808	130344953	+	B4	SINE	B4	chr4	130344858	130344860	-	ENSMUST00000149755.8,ENSMUSG00000028772.19	Zcchc17	ENSMUSG00000028772.19	ENSMUST00000149755.8	protein_coding	chr4:130316695-130344859
chr4	130758431	130758576	-	B1_Mus2	SINE	Alu	chr4	130758562	130758564	+	ENSMUST00000154720.1,ENSMUSG00000087449.1	Gm12971	ENSMUSG00000087449.1	ENSMUST00000154720.1	sense_intronic	chr4:130758563-130762379
chr4	130779059	130779423	-	MTD	LTR	ERVL-MaLR	chr4	130779245	130779247	-	ENSMUST00000180943.1,ENSMUSG00000097158.1	Gm26516	ENSMUSG00000097158.1	ENSMUST00000180943.1	lincRNA	chr4:130774817-130779246
chr4	130792513	130792544	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	130792536	130792538	+	ENSMUST00000070478.3,ENSMUSG00000025743.14	Sdc3	ENSMUSG00000025743.14	ENSMUST00000070478.3	protein_coding	chr4:130792537-130826319
chr4	130811908	130811953	-	MIR3	SINE	MIR	chr4	130811937	130811939	+	ENSMUST00000152591.7,ENSMUSG00000025743.14	Sdc3	ENSMUSG00000025743.14	ENSMUST00000152591.7	protein_coding	chr4:130811938-130819059
chr4	131677764	131677847	-	MIRb	SINE	MIR	chr4	131677844	131677846	-	ENSMUST00000138697.1,ENSMUSG00000087171.1	Gm12962	ENSMUSG00000087171.1	ENSMUST00000138697.1	lincRNA	chr4:131647376-131677845
chr4	131710475	131710541	+	MIR	SINE	MIR	chr4	131710507	131710509	-	ENSMUST00000152128.1,ENSMUSG00000086856.1	Gm16080	ENSMUSG00000086856.1	ENSMUST00000152128.1	lincRNA	chr4:131694607-131710508
chr4	131803494	131803666	+	MIRb	SINE	MIR	chr4	131803619	131803621	-	ENSMUST00000139641.1,ENSMUSG00000028909.17	Ptpru	ENSMUSG00000028909.17	ENSMUST00000139641.1	protein_coding	chr4:131799740-131803620
chr4	131992286	131992545	+	B4A	SINE	B4	chr4	131992288	131992290	-	ENSMUST00000184484.1,ENSMUSG00000098577.1	Gm27445	ENSMUSG00000098577.1	ENSMUST00000184484.1	miRNA	chr4:131992218-131992289
chr4	132218502	132218534	+	(CA)n	Simple_repeat	Simple_repeat	chr4	132218527	132218529	-	ENSMUST00000116947.2,ENSMUSG00000080597.2	Gm22033	ENSMUSG00000080597.2	ENSMUST00000116947.2	miRNA	chr4:132218439-132218528
chr4	132261499	132261541	+	(CGGG)n	Simple_repeat	Simple_repeat	chr4	132261520	132261522	-	ENSMUST00000105965.7,ENSMUSG00000028901.13	Gmeb1	ENSMUSG00000028901.13	ENSMUST00000105965.7	protein_coding	chr4:132222946-132261521
chr4	132265706	132265728	+	AT_rich	Low_complexity	Low_complexity	chr4	132265707	132265709	+	ENSMUST00000190917.1,ENSMUSG00000100813.1	Gm28874	ENSMUSG00000100813.1	ENSMUST00000190917.1	lincRNA	chr4:132265708-132268841
chr4	132352324	132352527	-	U17	snRNA	snRNA	chr4	132352525	132352527	-	ENSMUST00000083419.1,ENSMUSG00000065353.1	Snora73b	ENSMUSG00000065353.1	ENSMUST00000083419.1	snoRNA	chr4:132352322-132352526
chr4	132352776	132352980	-	U17	snRNA	snRNA	chr4	132352932	132352934	-	ENSMUST00000141090.7,ENSMUSG00000085241.7	Snhg3	ENSMUSG00000085241.7	ENSMUST00000141090.7	processed_transcript	chr4:132351934-132352933
chr4	132352776	132352980	-	U17	snRNA	snRNA	chr4	132352978	132352980	-	ENSMUST00000082453.1,ENSMUSG00000064387.1	Snora73a	ENSMUSG00000064387.1	ENSMUST00000082453.1	snoRNA	chr4:132352775-132352979
chr4	132408284	132408406	+	B1_Mur4	SINE	Alu	chr4	132408308	132408310	+	ENSMUST00000175120.3,ENSMUSG00000096350.1	Gm25707	ENSMUSG00000096350.1	ENSMUST00000175120.3	miRNA	chr4:132408309-132408404
chr4	132441947	132442041	+	RMER4A	LTR	ERVK	chr4	132442033	132442035	+	ENSMUST00000082805.1,ENSMUSG00000064739.1	Gm23055	ENSMUSG00000064739.1	ENSMUST00000082805.1	snRNA	chr4:132442034-132442127
chr4	132547206	132547235	+	AT_rich	Low_complexity	Low_complexity	chr4	132547206	132547208	-	ENSMUST00000083689.1,ENSMUSG00000065623.1	Gm24762	ENSMUSG00000065623.1	ENSMUST00000083689.1	snRNA	chr4:132547104-132547207
chr4	132551140	132551320	+	G-rich	Low_complexity	Low_complexity	chr4	132551294	132551296	+	ENSMUST00000105937.2,ENSMUSG00000054405.14	Dnajc8	ENSMUSG00000054405.14	ENSMUST00000105937.2	protein_coding	chr4:132551295-132553443
chr4	132922513	132922583	+	G-rich	Low_complexity	Low_complexity	chr4	132922557	132922559	-	ENSMUST00000030696.10,ENSMUSG00000028878.11	Fam76a	ENSMUSG00000028878.11	ENSMUST00000030696.10	protein_coding	chr4:132899213-132922558
chr4	132931213	132931317	-	U6	snRNA	snRNA	chr4	132931316	132931318	-	ENSMUST00000157286.1,ENSMUSG00000087911.1	Gm24913	ENSMUSG00000087911.1	ENSMUST00000157286.1	snRNA	chr4:132931211-132931317
chr4	133011560	133011660	+	G-rich	Low_complexity	Low_complexity	chr4	133011564	133011566	+	ENSMUST00000145682.1,ENSMUSG00000037692.14	Ahdc1	ENSMUSG00000037692.14	ENSMUST00000145682.1	protein_coding	chr4:133011565-133055083
chr4	133011834	133011864	+	G-rich	Low_complexity	Low_complexity	chr4	133011837	133011839	+	ENSMUST00000156677.7,ENSMUSG00000037692.14	Ahdc1	ENSMUSG00000037692.14	ENSMUST00000156677.7	protein_coding	chr4:133011838-133077628
chr4	133175819	133176040	-	ID_B1	SINE	B4	chr4	133176000	133176002	+	ENSMUST00000123578.1,ENSMUSG00000028868.13	Wasf2	ENSMUSG00000028868.13	ENSMUST00000123578.1	protein_coding	chr4:133176001-133176612
chr4	133263110	133263140	+	(GGA)n	Simple_repeat	Simple_repeat	chr4	133263112	133263114	-	ENSMUST00000030674.7,ENSMUSG00000028860.13	Sytl1	ENSMUSG00000028860.13	ENSMUST00000030674.7	protein_coding	chr4:133253090-133263113
chr4	133353390	133353523	-	B1F1	SINE	Alu	chr4	133353480	133353482	-	ENSMUST00000140976.1,ENSMUSG00000037622.14	Wdtc1	ENSMUSG00000037622.14	ENSMUST00000140976.1	protein_coding	chr4:133313799-133353481
chr4	133558821	133558958	+	B1_Mus1	SINE	Alu	chr4	133558948	133558950	-	ENSMUST00000175076.2,ENSMUSG00000093886.1	Gm23158	ENSMUSG00000093886.1	ENSMUST00000175076.2	miRNA	chr4:133558824-133558949
chr4	133633389	133633485	+	GC_rich	Low_complexity	Low_complexity	chr4	133633468	133633470	-	ENSMUST00000084238.4,ENSMUSG00000037553.14	Zdhhc18	ENSMUSG00000037553.14	ENSMUST00000084238.4	protein_coding	chr4:133605299-133633469
chr4	133650002	133650272	-	LTR50	LTR	ERVL	chr4	133650153	133650155	-	ENSMUST00000146464.1,ENSMUSG00000037553.14	Zdhhc18	ENSMUSG00000037553.14	ENSMUST00000146464.1	protein_coding	chr4:133627277-133650154
chr4	133654000	133654157	+	B1_Mm	SINE	Alu	chr4	133654001	133654003	+	ENSMUST00000175290.2,ENSMUSG00000093031.2	Gm22662	ENSMUSG00000093031.2	ENSMUST00000175290.2	misc_RNA	chr4:133654002-133654257
chr4	133672626	133672670	+	GC_rich	Low_complexity	Low_complexity	chr4	133672646	133672648	-	ENSMUST00000062118.10,ENSMUSG00000043257.15	Pigv	ENSMUSG00000043257.15	ENSMUST00000062118.10	protein_coding	chr4:133660387-133672647
chr4	133672626	133672670	+	GC_rich	Low_complexity	Low_complexity	chr4	133672646	133672648	-	ENSMUST00000067902.12,ENSMUSG00000043257.15	Pigv	ENSMUSG00000043257.15	ENSMUST00000067902.12	protein_coding	chr4:133662254-133672647
chr4	133672626	133672670	+	GC_rich	Low_complexity	Low_complexity	chr4	133672646	133672648	-	ENSMUST00000151837.1,ENSMUSG00000043257.15	Pigv	ENSMUSG00000043257.15	ENSMUST00000151837.1	protein_coding	chr4:133668757-133672647
chr4	133797652	133797719	-	U4	snRNA	snRNA	chr4	133797718	133797720	-	ENSMUST00000122606.1,ENSMUSG00000084555.1	Gm25270	ENSMUSG00000084555.1	ENSMUST00000122606.1	snRNA	chr4:133797582-133797719
chr4	133980480	133980623	-	B1_Mur1	SINE	Alu	chr4	133980609	133980611	-	ENSMUST00000134096.1,ENSMUSG00000012117.13	Dhdds	ENSMUSG00000012117.13	ENSMUST00000134096.1	protein_coding	chr4:133969058-133980610
chr4	134009279	134009422	+	RSINE1	SINE	B4	chr4	134009410	134009412	-	ENSMUST00000176292.1,ENSMUSG00000050966.9	Lin28a	ENSMUSG00000050966.9	ENSMUST00000176292.1	protein_coding	chr4:134006250-134009411
chr4	134139267	134139300	+	(TTTC)n	Simple_repeat	Simple_repeat	chr4	134139276	134139278	-	ENSMUST00000126014.1,ENSMUSG00000037443.13	Cep85	ENSMUSG00000037443.13	ENSMUST00000126014.1	protein_coding	chr4:134132232-134139277
chr4	134383622	134383922	-	ORR1A2	LTR	ERVL-MaLR	chr4	134383849	134383851	-	ENSMUST00000132387.7,ENSMUSG00000028838.11	Extl1	ENSMUSG00000028838.11	ENSMUST00000132387.7	protein_coding	chr4:134360548-134383850
chr4	134552165	134552208	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	134552165	134552167	-	ENSMUST00000060435.6,ENSMUSG00000050989.9	Selenon	ENSMUSG00000050989.9	ENSMUST00000060435.6	protein_coding	chr4:134537892-134552166
chr4	134853126	134853163	+	GC_rich	Low_complexity	Low_complexity	chr4	134853148	134853150	-	ENSMUST00000137707.7,ENSMUSG00000028826.14	Maco1	ENSMUSG00000028826.14	ENSMUST00000137707.7	protein_coding	chr4:134811194-134853149
chr4	134853318	134853361	+	GC_rich	Low_complexity	Low_complexity	chr4	134853344	134853346	-	ENSMUST00000030628.14,ENSMUSG00000028826.14	Maco1	ENSMUSG00000028826.14	ENSMUST00000030628.14	protein_coding	chr4:134802759-134853345
chr4	135374626	135374746	-	L1ME4b	LINE	L1	chr4	135374687	135374689	-	ENSMUST00000134717.1,ENSMUSG00000043924.16	Ncmap	ENSMUSG00000043924.16	ENSMUST00000134717.1	protein_coding	chr4:135370517-135374688
chr4	135455282	135455373	-	PB1D10	SINE	Alu	chr4	135455334	135455336	-	ENSMUST00000148023.2,ENSMUSG00000028803.18	Nipal3	ENSMUSG00000028803.18	ENSMUST00000148023.2	protein_coding	chr4:135452267-135455335
chr4	135512322	135512479	+	MER53	DNA	hAT	chr4	135512478	135512480	-	ENSMUST00000116824.1,ENSMUSG00000080474.1	Gm25317	ENSMUSG00000080474.1	ENSMUST00000116824.1	miRNA	chr4:135512351-135512479
chr4	135583671	135583750	+	PB1D11	SINE	Alu	chr4	135583747	135583749	+	ENSMUST00000157554.1,ENSMUSG00000088179.1	Gm23106	ENSMUSG00000088179.1	ENSMUST00000157554.1	snRNA	chr4:135583748-135583848
chr4	135798149	135798262	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	135798189	135798191	+	ENSMUST00000145304.7,ENSMUSG00000037139.15	Myom3	ENSMUSG00000037139.15	ENSMUST00000145304.7	protein_coding	chr4:135798190-135815564
chr4	135800592	135800677	+	RSINE1	SINE	B4	chr4	135800643	135800645	+	ENSMUST00000142177.1,ENSMUSG00000037139.15	Myom3	ENSMUSG00000037139.15	ENSMUST00000142177.1	protein_coding	chr4:135800644-135806112
chr4	135853527	135853679	-	B1_Mur3	SINE	Alu	chr4	135853677	135853679	+	ENSMUST00000120937.1,ENSMUSG00000081672.1	Gm13000	ENSMUSG00000081672.1	ENSMUST00000120937.1	processed_pseudogene	chr4:135853678-135854173
chr4	135863241	135863362	+	7SLRNA	srpRNA	srpRNA	chr4	135863294	135863296	+	ENSMUST00000142002.1,ENSMUSG00000028676.17	Srsf10	ENSMUSG00000028676.17	ENSMUST00000142002.1	protein_coding	chr4:135863295-135863869
chr4	135960329	135960430	-	RSINE1	SINE	B4	chr4	135960331	135960333	+	ENSMUST00000135644.1,ENSMUSG00000028672.13	Hmgcl	ENSMUSG00000028672.13	ENSMUST00000135644.1	protein_coding	chr4:135960332-135962216
chr4	135965067	135965224	-	MIR	SINE	MIR	chr4	135965164	135965166	+	ENSMUST00000102540.1,ENSMUSG00000028671.16	Gale	ENSMUSG00000028671.16	ENSMUST00000102540.1	protein_coding	chr4:135965165-135968178
chr4	135965067	135965224	-	MIR	SINE	MIR	chr4	135965194	135965196	+	ENSMUST00000153542.7,ENSMUSG00000028671.16	Gale	ENSMUSG00000028671.16	ENSMUST00000153542.7	protein_coding	chr4:135965195-135966926
chr4	136028757	136028829	-	ID4	SINE	ID	chr4	136028797	136028799	-	ENSMUST00000153223.7,ENSMUSG00000059291.15	Rpl11	ENSMUSG00000059291.15	ENSMUST00000153223.7	protein_coding	chr4:136028265-136028798
chr4	136137495	136137595	+	U6	snRNA	snRNA	chr4	136137495	136137497	+	ENSMUST00000157989.1,ENSMUSG00000088614.1	Gm26001	ENSMUSG00000088614.1	ENSMUST00000157989.1	snRNA	chr4:136137496-136137598
chr4	136338919	136339114	-	B3	SINE	B2	chr4	136339018	136339020	+	ENSMUST00000182327.1,ENSMUSG00000066037.14	Hnrnpr	ENSMUSG00000066037.14	ENSMUST00000182327.1	protein_coding	chr4:136339019-136342966
chr4	136639537	136639613	-	L1ME1	LINE	L1	chr4	136639581	136639583	+	ENSMUST00000195460.1,ENSMUSG00000103119.1	Gm37583	ENSMUSG00000103119.1	ENSMUST00000195460.1	TEC	chr4:136639582-136642068
chr4	136956725	136956898	+	GC_rich	Low_complexity	Low_complexity	chr4	136956815	136956817	-	ENSMUST00000030420.8,ENSMUSG00000028661.8	Epha8	ENSMUSG00000028661.8	ENSMUST00000030420.8	protein_coding	chr4:136929419-136956816
chr4	137025655	137025693	+	B1_Mur2	SINE	Alu	chr4	137025683	137025685	+	ENSMUST00000104436.1,ENSMUSG00000077624.1	Gm23834	ENSMUSG00000077624.1	ENSMUST00000104436.1	snoRNA	chr4:137025684-137025812
chr4	137183948	137184146	+	(GTCTG)n	Simple_repeat	Simple_repeat	chr4	137183986	137183988	+	ENSMUST00000175553.1,ENSMUSG00000093294.1	Gm25399	ENSMUSG00000093294.1	ENSMUST00000175553.1	miRNA	chr4:137183987-137184062
chr4	137183948	137184146	+	(GTCTG)n	Simple_repeat	Simple_repeat	chr4	137184064	137184066	+	ENSMUST00000175107.1,ENSMUSG00000092848.1	Gm23263	ENSMUSG00000092848.1	ENSMUST00000175107.1	miRNA	chr4:137184065-137184140
chr4	137220392	137220416	+	(TG)n	Simple_repeat	Simple_repeat	chr4	137220398	137220400	-	ENSMUST00000119518.1,ENSMUSG00000080806.1	Gm13005	ENSMUSG00000080806.1	ENSMUST00000119518.1	processed_pseudogene	chr4:137219760-137220399
chr4	137325536	137325611	+	U6	snRNA	snRNA	chr4	137325558	137325560	+	ENSMUST00000158574.1,ENSMUSG00000089199.1	Gm25772	ENSMUSG00000089199.1	ENSMUST00000158574.1	snRNA	chr4:137325559-137325614
chr4	137422684	137422884	+	ID_B1	SINE	B4	chr4	137422790	137422792	-	ENSMUST00000134565.1,ENSMUSG00000023433.8	Cela3b	ENSMUSG00000023433.8	ENSMUST00000134565.1	protein_coding	chr4:137421008-137422791
chr4	137438043	137438429	-	MTD	LTR	ERVL-MaLR	chr4	137438394	137438396	-	ENSMUST00000140495.1,ENSMUSG00000086845.1	Gm13010	ENSMUSG00000086845.1	ENSMUST00000140495.1	antisense	chr4:137436579-137438395
chr4	137468692	137468784	+	G-rich	Low_complexity	Low_complexity	chr4	137468768	137468770	+	ENSMUST00000030547.14,ENSMUSG00000028763.17	Hspg2	ENSMUSG00000028763.17	ENSMUST00000030547.14	protein_coding	chr4:137468769-137570630
chr4	137594210	137594248	+	GC_rich	Low_complexity	Low_complexity	chr4	137594227	137594229	+	ENSMUST00000105838.7,ENSMUSG00000043411.15	Usp48	ENSMUSG00000043411.15	ENSMUST00000105838.7	protein_coding	chr4:137594228-137625291
chr4	137619725	137619795	-	ID4_	SINE	ID	chr4	137619727	137619729	+	ENSMUST00000138599.1,ENSMUSG00000043411.15	Usp48	ENSMUSG00000043411.15	ENSMUST00000138599.1	protein_coding	chr4:137619728-137623370
chr4	137664730	137664762	+	(CGG)n	Simple_repeat	Simple_repeat	chr4	137664753	137664755	+	ENSMUST00000156683.7,ENSMUSG00000041351.16	Rap1gap	ENSMUSG00000041351.16	ENSMUST00000156683.7	protein_coding	chr4:137664754-137711842
chr4	137687311	137687519	-	L2b	LINE	L2	chr4	137687417	137687419	+	ENSMUST00000131536.1,ENSMUSG00000041351.16	Rap1gap	ENSMUSG00000041351.16	ENSMUST00000131536.1	protein_coding	chr4:137687418-137715821
chr4	137796365	137796408	+	GC_rich	Low_complexity	Low_complexity	chr4	137796383	137796385	-	ENSMUST00000030551.10,ENSMUSG00000028766.10	Alpl	ENSMUSG00000028766.10	ENSMUST00000030551.10	protein_coding	chr4:137741733-137796384
chr4	137883396	137883541	-	L1MC3	LINE	L1	chr4	137883411	137883413	-	ENSMUST00000152368.1,ENSMUSG00000085823.7	Gm13012	ENSMUSG00000085823.7	ENSMUST00000152368.1	antisense	chr4:137882370-137883412
chr4	138201498	138201643	-	B1_Mur3	SINE	Alu	chr4	138201588	138201590	+	ENSMUST00000148074.1,ENSMUSG00000028760.16	Eif4g3	ENSMUSG00000028760.16	ENSMUST00000148074.1	protein_coding	chr4:138201589-138203469
chr4	138201532	138201656	-	B4	SINE	B4	chr4	138201588	138201590	+	ENSMUST00000148074.1,ENSMUSG00000028760.16	Eif4g3	ENSMUSG00000028760.16	ENSMUST00000148074.1	protein_coding	chr4:138201589-138203469
chr4	138216565	138216633	+	G-rich	Low_complexity	Low_complexity	chr4	138216599	138216601	+	ENSMUST00000142420.1,ENSMUSG00000028759.13	Hp1bp3	ENSMUSG00000028759.13	ENSMUST00000142420.1	protein_coding	chr4:138216600-138221657
chr4	138216565	138216633	+	G-rich	Low_complexity	Low_complexity	chr4	138216625	138216627	+	ENSMUST00000137865.7,ENSMUSG00000028759.13	Hp1bp3	ENSMUSG00000028759.13	ENSMUST00000137865.7	protein_coding	chr4:138216626-138226023
chr4	138216565	138216633	+	G-rich	Low_complexity	Low_complexity	chr4	138216626	138216628	+	ENSMUST00000105826.7,ENSMUSG00000028759.13	Hp1bp3	ENSMUSG00000028759.13	ENSMUST00000105826.7	protein_coding	chr4:138216627-138243148
chr4	138216565	138216633	+	G-rich	Low_complexity	Low_complexity	chr4	138216626	138216628	+	ENSMUST00000097836.9,ENSMUSG00000028759.13	Hp1bp3	ENSMUSG00000028759.13	ENSMUST00000097836.9	protein_coding	chr4:138216627-138243170
chr4	138216565	138216633	+	G-rich	Low_complexity	Low_complexity	chr4	138216626	138216628	+	ENSMUST00000030541.12,ENSMUSG00000028759.13	Hp1bp3	ENSMUSG00000028759.13	ENSMUST00000030541.12	protein_coding	chr4:138216627-138243170
chr4	138250402	138250432	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr4	138250402	138250404	+	ENSMUST00000105824.7,ENSMUSG00000045349.15	Sh2d5	ENSMUSG00000045349.15	ENSMUST00000105824.7	protein_coding	chr4:138250403-138261332
chr4	138250402	138250432	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr4	138250412	138250414	+	ENSMUST00000124239.7,ENSMUSG00000045349.15	Sh2d5	ENSMUSG00000045349.15	ENSMUST00000124239.7	protein_coding	chr4:138250413-138257279
chr4	138250402	138250432	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr4	138250422	138250424	+	ENSMUST00000139033.7,ENSMUSG00000045349.15	Sh2d5	ENSMUSG00000045349.15	ENSMUST00000139033.7	protein_coding	chr4:138250423-138255690
chr4	138395183	138395220	+	(TCC)n	Simple_repeat	Simple_repeat	chr4	138395197	138395199	+	ENSMUST00000062902.6,ENSMUSG00000046109.6	AB041806	ENSMUSG00000046109.6	ENSMUST00000062902.6	antisense	chr4:138395198-138397714
chr4	138587721	138587890	-	B4	SINE	B4	chr4	138587728	138587730	-	ENSMUST00000157964.1,ENSMUSG00000088589.1	Gm22961	ENSMUSG00000088589.1	ENSMUST00000157964.1	snRNA	chr4:138587624-138587729
chr4	138606899	138607042	-	MIRc	SINE	MIR	chr4	138606998	138607000	-	ENSMUST00000133319.1,ENSMUSG00000028753.12	Vwa5b1	ENSMUSG00000028753.12	ENSMUST00000133319.1	protein_coding	chr4:138600144-138606999
chr4	138737110	138737207	-	L2a	LINE	L2	chr4	138737166	138737168	-	ENSMUST00000105810.7,ENSMUSG00000043621.13	Ubxn10	ENSMUSG00000043621.13	ENSMUST00000105810.7	protein_coding	chr4:138718538-138737167
chr4	138737110	138737207	-	L2a	LINE	L2	chr4	138737135	138737137	-	ENSMUST00000135156.1,ENSMUSG00000043621.13	Ubxn10	ENSMUSG00000043621.13	ENSMUST00000135156.1	protein_coding	chr4:138731877-138737136
chr4	138863368	138863504	-	MTE2b	LTR	ERVL-MaLR	chr4	138863481	138863483	-	ENSMUST00000102513.7,ENSMUSG00000041193.15	Pla2g5	ENSMUSG00000041193.15	ENSMUST00000102513.7	protein_coding	chr4:138799244-138863482
chr4	138863368	138863504	-	MTE2b	LTR	ERVL-MaLR	chr4	138863468	138863470	-	ENSMUST00000030524.13,ENSMUSG00000041193.15	Pla2g5	ENSMUSG00000041193.15	ENSMUST00000030524.13	protein_coding	chr4:138799249-138863469
chr4	138863368	138863504	-	MTE2b	LTR	ERVL-MaLR	chr4	138863448	138863450	-	ENSMUST00000140100.1,ENSMUSG00000041193.15	Pla2g5	ENSMUSG00000041193.15	ENSMUST00000140100.1	protein_coding	chr4:138859065-138863449
chr4	139092968	139093010	+	GC_rich	Low_complexity	Low_complexity	chr4	139092992	139092994	-	ENSMUST00000042844.6,ENSMUSG00000041120.6	Nbl1	ENSMUSG00000041120.6	ENSMUST00000042844.6	protein_coding	chr4:139082284-139092993
chr4	139092968	139093010	+	GC_rich	Low_complexity	Low_complexity	chr4	139092967	139092969	-	ENSMUST00000132900.1,ENSMUSG00000041120.6	Nbl1	ENSMUSG00000041120.6	ENSMUST00000132900.1	protein_coding	chr4:139092076-139092968
chr4	139192880	139192916	+	GC_rich	Low_complexity	Low_complexity	chr4	139192898	139192900	+	ENSMUST00000102508.9,ENSMUSG00000028745.18	Capzb	ENSMUSG00000028745.18	ENSMUST00000102508.9	protein_coding	chr4:139192899-139291818
chr4	139316442	139316600	-	B2_Mm1a	SINE	B2	chr4	139316581	139316583	+	ENSMUST00000153645.1,ENSMUSG00000028743.7	Akr7a5	ENSMUSG00000028743.7	ENSMUST00000153645.1	protein_coding	chr4:139316582-139317410
chr4	139338106	139338445	+	LSU-rRNA_Hsa	rRNA	rRNA	chr4	139338205	139338207	+	ENSMUST00000175168.1,ENSMUSG00000092909.1	Gm25732	ENSMUSG00000092909.1	ENSMUST00000175168.1	miRNA	chr4:139338206-139338265
chr4	139338106	139338445	+	LSU-rRNA_Hsa	rRNA	rRNA	chr4	139338303	139338305	+	ENSMUST00000157318.1,ENSMUSG00000087943.1	Gm24245	ENSMUSG00000087943.1	ENSMUST00000157318.1	miRNA	chr4:139338304-139338360
chr4	139416183	139416291	-	PB1D10	SINE	Alu	chr4	139416211	139416213	+	ENSMUST00000149995.1,ENSMUSG00000066036.14	Ubr4	ENSMUSG00000066036.14	ENSMUST00000149995.1	protein_coding	chr4:139416212-139417026
chr4	139480243	139480423	+	B2_Mm2	SINE	B2	chr4	139480379	139480381	+	ENSMUST00000135534.1,ENSMUSG00000066036.14	Ubr4	ENSMUSG00000066036.14	ENSMUST00000135534.1	protein_coding	chr4:139480380-139482682
chr4	139530336	139530728	+	MTA_Mm	LTR	ERVL-MaLR	chr4	139530547	139530549	+	ENSMUST00000123827.8,ENSMUSG00000041025.15	Iffo2	ENSMUSG00000041025.15	ENSMUST00000123827.8	protein_coding	chr4:139530548-139617082
chr4	139588648	139589047	-	MTA_Mm	LTR	ERVL-MaLR	chr4	139588976	139588978	-	ENSMUST00000178322.1,ENSMUSG00000094359.1	Gm25571	ENSMUSG00000094359.1	ENSMUST00000178322.1	miRNA	chr4:139588876-139588977
chr4	139832963	139833059	+	C-rich	Low_complexity	Low_complexity	chr4	139833006	139833008	-	ENSMUST00000174681.1,ENSMUSG00000028736.13	Pax7	ENSMUSG00000028736.13	ENSMUST00000174681.1	protein_coding	chr4:139740676-139833007
chr4	139910466	139910546	+	Tigger19a	DNA	TcMar-Tigger	chr4	139910487	139910489	+	ENSMUST00000151651.1,ENSMUSG00000087646.1	Gm1667	ENSMUSG00000087646.1	ENSMUST00000151651.1	lincRNA	chr4:139910488-139912133
chr4	140246777	140246895	+	C-rich	Low_complexity	Low_complexity	chr4	140246783	140246785	-	ENSMUST00000039331.8,ENSMUSG00000040972.8	Igsf21	ENSMUSG00000040972.8	ENSMUST00000039331.8	protein_coding	chr4:140026846-140246784
chr4	140422477	140422875	+	GA-rich	Low_complexity	Low_complexity	chr4	140422523	140422525	+	ENSMUST00000135716.2,ENSMUSG00000086437.2	Gm13021	ENSMUSG00000086437.2	ENSMUST00000135716.2	lincRNA	chr4:140422524-140431931
chr4	140648681	140648791	+	GC_rich	Low_complexity	Low_complexity	chr4	140648749	140648751	-	ENSMUST00000105799.7,ENSMUSG00000040964.16	Arhgef10l	ENSMUSG00000040964.16	ENSMUST00000105799.7	protein_coding	chr4:140514485-140648750
chr4	140648681	140648791	+	GC_rich	Low_complexity	Low_complexity	chr4	140648749	140648751	-	ENSMUST00000039204.9,ENSMUSG00000040964.16	Arhgef10l	ENSMUSG00000040964.16	ENSMUST00000039204.9	protein_coding	chr4:140514485-140648750
chr4	140648681	140648791	+	GC_rich	Low_complexity	Low_complexity	chr4	140648755	140648757	-	ENSMUST00000097820.8,ENSMUSG00000040964.16	Arhgef10l	ENSMUSG00000040964.16	ENSMUST00000097820.8	protein_coding	chr4:140514485-140648756
chr4	140679731	140679823	+	PB1D7	SINE	Alu	chr4	140679752	140679754	+	ENSMUST00000141469.1,ENSMUSG00000086159.1	Gm13025	ENSMUSG00000086159.1	ENSMUST00000141469.1	lincRNA	chr4:140679753-140684617
chr4	140692654	140692799	+	B1_Mur4	SINE	Alu	chr4	140692696	140692698	+	ENSMUST00000175041.3,ENSMUSG00000095878.1	Gm23045	ENSMUSG00000095878.1	ENSMUST00000175041.3	miRNA	chr4:140692697-140692792
chr4	140803979	140804107	+	B1_Mur2	SINE	Alu	chr4	140804021	140804023	-	ENSMUST00000172098.1,ENSMUSG00000025328.9	Padi3	ENSMUSG00000025328.9	ENSMUST00000172098.1	protein_coding	chr4:140785369-140804022
chr4	140918683	140918756	+	U6	snRNA	snRNA	chr4	140918683	140918685	+	ENSMUST00000082509.1,ENSMUSG00000064443.1	Gm26226	ENSMUSG00000064443.1	ENSMUST00000082509.1	snRNA	chr4:140918684-140918799
chr4	141010376	141010440	+	GA-rich	Low_complexity	Low_complexity	chr4	141010417	141010419	+	ENSMUST00000166376.8,ENSMUSG00000060572.17	Mfap2	ENSMUSG00000060572.17	ENSMUST00000166376.8	protein_coding	chr4:141010418-141015814
chr4	141068800	141068878	-	MIRb	SINE	MIR	chr4	141068837	141068839	-	ENSMUST00000132704.1,ENSMUSG00000028923.14	Necap2	ENSMUSG00000028923.14	ENSMUST00000132704.1	protein_coding	chr4:141067395-141068838
chr4	141265852	141266157	-	ORR1A1	LTR	ERVL-MaLR	chr4	141266015	141266017	-	ENSMUST00000127875.1,ENSMUSG00000085774.1	Gm13055	ENSMUSG00000085774.1	ENSMUST00000127875.1	antisense	chr4:141261762-141266016
chr4	141346124	141346267	-	B1_Mur3	SINE	Alu	chr4	141346163	141346165	+	ENSMUST00000175439.1,ENSMUSG00000093180.1	Gm25690	ENSMUSG00000093180.1	ENSMUST00000175439.1	miRNA	chr4:141346164-141346240
chr4	141347557	141347889	-	L2b	LINE	L2	chr4	141347813	141347815	+	ENSMUST00000124848.1,ENSMUSG00000085836.1	Gm13074	ENSMUSG00000085836.1	ENSMUST00000124848.1	lincRNA	chr4:141347814-141350853
chr4	141488312	141488335	+	(A)n	Simple_repeat	Simple_repeat	chr4	141488311	141488313	-	ENSMUST00000152411.1,ENSMUSG00000040761.16	Spen	ENSMUSG00000040761.16	ENSMUST00000152411.1	protein_coding	chr4:141484593-141488312
chr4	141596462	141596599	+	B1_Mus2	SINE	Alu	chr4	141596468	141596470	-	ENSMUST00000137491.1,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000137491.1	protein_coding	chr4:141590050-141596469
chr4	141599833	141599932	+	C-rich	Low_complexity	Low_complexity	chr4	141599923	141599925	-	ENSMUST00000105784.7,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000105784.7	protein_coding	chr4:141576062-141599924
chr4	141599833	141599932	+	C-rich	Low_complexity	Low_complexity	chr4	141599834	141599836	-	ENSMUST00000141518.7,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000141518.7	protein_coding	chr4:141589298-141599835
chr4	141599833	141599932	+	C-rich	Low_complexity	Low_complexity	chr4	141599887	141599889	-	ENSMUST00000127455.7,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000127455.7	protein_coding	chr4:141590066-141599888
chr4	141605983	141606227	+	MLT1F1	LTR	ERVL-MaLR	chr4	141606051	141606053	-	ENSMUST00000105785.8,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000105785.8	protein_coding	chr4:141576062-141606052
chr4	141605983	141606227	+	MLT1F1	LTR	ERVL-MaLR	chr4	141606036	141606038	-	ENSMUST00000130181.7,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000130181.7	protein_coding	chr4:141589320-141606037
chr4	141605983	141606227	+	MLT1F1	LTR	ERVL-MaLR	chr4	141606095	141606097	-	ENSMUST00000153189.7,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000153189.7	protein_coding	chr4:141589320-141606096
chr4	141605983	141606227	+	MLT1F1	LTR	ERVL-MaLR	chr4	141606024	141606026	-	ENSMUST00000123150.1,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000123150.1	protein_coding	chr4:141595252-141606025
chr4	141605983	141606227	+	MLT1F1	LTR	ERVL-MaLR	chr4	141606035	141606037	-	ENSMUST00000136831.1,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000136831.1	protein_coding	chr4:141595303-141606036
chr4	141605983	141606227	+	MLT1F1	LTR	ERVL-MaLR	chr4	141606026	141606028	-	ENSMUST00000133874.1,ENSMUSG00000006219.12	Fblim1	ENSMUSG00000006219.12	ENSMUST00000133874.1	protein_coding	chr4:141595370-141606027
chr4	141793692	141793724	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	141793709	141793711	+	ENSMUST00000153094.1,ENSMUSG00000028914.13	Casp9	ENSMUSG00000028914.13	ENSMUST00000153094.1	protein_coding	chr4:141793710-141805442
chr4	141819183	141819323	+	B4A	SINE	B4	chr4	141819201	141819203	-	ENSMUST00000127962.1,ENSMUSG00000058579.5	Cela2a	ENSMUSG00000058579.5	ENSMUST00000127962.1	protein_coding	chr4:141814962-141819202
chr4	141951936	141952149	-	B4A	SINE	B4	chr4	141952075	141952077	-	ENSMUST00000129192.7,ENSMUSG00000051435.11	Fhad1	ENSMUSG00000051435.11	ENSMUST00000129192.7	protein_coding	chr4:141928388-141952076
chr4	142048348	142048789	+	MLT1J	LTR	ERVL-MaLR	chr4	142048577	142048579	-	ENSMUST00000128385.1,ENSMUSG00000085574.1	Gm13053	ENSMUSG00000085574.1	ENSMUST00000128385.1	sense_intronic	chr4:142042912-142048578
chr4	143243360	143243469	-	ORR1A3	LTR	ERVL-MaLR	chr4	143243367	143243369	-	ENSMUST00000122149.1,ENSMUSG00000082575.1	Gm13050	ENSMUSG00000082575.1	ENSMUST00000122149.1	processed_pseudogene	chr4:143242024-143243368
chr4	143340388	143340619	+	7SK	RNA	RNA	chr4	143340398	143340400	+	ENSMUST00000157770.1,ENSMUSG00000088395.1	Gm26313	ENSMUSG00000088395.1	ENSMUST00000157770.1	misc_RNA	chr4:143340399-143340706
chr4	143412327	143412467	-	B1_Mur2	SINE	Alu	chr4	143412425	143412427	+	ENSMUST00000059790.10,ENSMUSG00000046862.14	Pramef8	ENSMUSG00000046862.14	ENSMUST00000059790.10	protein_coding	chr4:143412426-143421091
chr4	143745633	143746036	+	ERVB4_1-I_MM-int	LTR	ERVK	chr4	143745786	143745788	+	ENSMUST00000121527.1,ENSMUSG00000082030.1	Gm13081	ENSMUSG00000082030.1	ENSMUST00000121527.1	processed_pseudogene	chr4:143745787-143751385
chr4	144058836	144059305	+	MT2C_Mm	LTR	ERVL	chr4	144059125	144059127	+	ENSMUST00000091676.11,ENSMUSG00000073724.12	Pramel4	ENSMUSG00000073724.12	ENSMUST00000091676.11	protein_coding	chr4:144059126-144069318
chr4	144058836	144059305	+	MT2C_Mm	LTR	ERVL	chr4	144059125	144059127	+	ENSMUST00000156324.2,ENSMUSG00000073724.12	Pramel4	ENSMUSG00000073724.12	ENSMUST00000156324.2	protein_coding	chr4:144059126-144069324
chr4	144058836	144059305	+	MT2C_Mm	LTR	ERVL	chr4	144059138	144059140	+	ENSMUST00000133626.7,ENSMUSG00000073724.12	Pramel4	ENSMUSG00000073724.12	ENSMUST00000133626.7	protein_coding	chr4:144059139-144066731
chr4	144213246	144213326	+	B1_Mus1	SINE	Alu	chr4	144213317	144213319	-	ENSMUST00000105755.1,ENSMUSG00000046262.14	C87977	ENSMUSG00000046262.14	ENSMUST00000105755.1	protein_coding	chr4:144206776-144213318
chr4	144280303	144280760	-	MT2C_Mm	LTR	ERVL	chr4	144280465	144280467	-	ENSMUST00000035757.12,ENSMUSG00000036749.15	Pramel5	ENSMUSG00000036749.15	ENSMUST00000035757.12	protein_coding	chr4:144270633-144280466
chr4	144280303	144280760	-	MT2C_Mm	LTR	ERVL	chr4	144280478	144280480	-	ENSMUST00000144127.7,ENSMUSG00000036749.15	Pramel5	ENSMUSG00000036749.15	ENSMUST00000144127.7	protein_coding	chr4:144272819-144280479
chr4	144280303	144280760	-	MT2C_Mm	LTR	ERVL	chr4	144280487	144280489	-	ENSMUST00000133357.1,ENSMUSG00000036749.15	Pramel5	ENSMUSG00000036749.15	ENSMUST00000133357.1	protein_coding	chr4:144273462-144280488
chr4	144958793	144958888	+	PB1D10	SINE	Alu	chr4	144958847	144958849	-	ENSMUST00000193467.1,ENSMUSG00000103911.1	Gm38074	ENSMUSG00000103911.1	ENSMUST00000193467.1	TEC	chr4:144957155-144958848
chr4	145072569	145072658	+	PB1D10	SINE	Alu	chr4	145072601	145072603	-	ENSMUST00000155670.1,ENSMUSG00000020220.16	Vps13d	ENSMUSG00000020220.16	ENSMUST00000155670.1	protein_coding	chr4:145069968-145072602
chr4	145762889	145763117	-	RMER17C	LTR	ERVK	chr4	145762928	145762930	+	ENSMUST00000153010.1,ENSMUSG00000087513.1	Gm13236	ENSMUSG00000087513.1	ENSMUST00000153010.1	lincRNA	chr4:145762929-145764958
chr4	145899310	145899975	+	MMSAT4	Satellite	Satellite	chr4	145899899	145899901	+	ENSMUST00000166629.1,ENSMUSG00000078500.3	Zfp986	ENSMUSG00000078500.3	ENSMUST00000166629.1	protein_coding	chr4:145899900-145899962
chr4	146251774	146252030	-	RMER17C	LTR	ERVK	chr4	146251828	146251830	+	ENSMUST00000123828.1,ENSMUSG00000085525.7	Gm13166	ENSMUSG00000085525.7	ENSMUST00000123828.1	lincRNA	chr4:146251829-146253858
chr4	146252150	146252227	+	RMER5	LTR	ERV1	chr4	146252172	146252174	+	ENSMUST00000154592.7,ENSMUSG00000085525.7	Gm13166	ENSMUSG00000085525.7	ENSMUST00000154592.7	lincRNA	chr4:146252173-146272975
chr4	146480272	146480704	+	Lx	LINE	L1	chr4	146480666	146480668	+	ENSMUST00000119646.1,ENSMUSG00000081998.1	Gm13245	ENSMUSG00000081998.1	ENSMUST00000119646.1	processed_pseudogene	chr4:146480667-146480926
chr4	146511542	146511841	+	RLTR4_Mm	LTR	ERV1	chr4	146511763	146511765	-	ENSMUST00000181610.1,ENSMUSG00000096979.1	Gm26880	ENSMUSG00000096979.1	ENSMUST00000181610.1	lincRNA	chr4:146509094-146511764
chr4	147024927	147024969	+	(CAAT)n	Simple_repeat	Simple_repeat	chr4	147024958	147024960	-	ENSMUST00000181199.1,ENSMUSG00000096958.1	Gm26573	ENSMUSG00000096958.1	ENSMUST00000181199.1	lincRNA	chr4:146153456-147024959
chr4	147135712	147136480	-	RMER6A	LTR	ERVK	chr4	147136277	147136279	+	ENSMUST00000181486.1,ENSMUSG00000097122.1	Gm26624	ENSMUSG00000097122.1	ENSMUST00000181486.1	lincRNA	chr4:147136278-147457019
chr4	147331649	147333183	+	MMSAT4	Satellite	Satellite	chr4	147332406	147332408	+	ENSMUST00000166764.1,ENSMUSG00000078498.5	Zfp988	ENSMUSG00000078498.5	ENSMUST00000166764.1	protein_coding	chr4:147332407-147332469
chr4	147540132	147540309	-	B2_Mm1t	SINE	B2	chr4	147540217	147540219	+	ENSMUST00000104964.2,ENSMUSG00000078160.2	Gm16503	ENSMUSG00000078160.2	ENSMUST00000104964.2	protein_coding	chr4:147540218-147543500
chr4	147670743	147670901	-	B3A	SINE	B2	chr4	147670853	147670855	-	ENSMUST00000147722.1,ENSMUSG00000086130.1	Gm16211	ENSMUSG00000086130.1	ENSMUST00000147722.1	lincRNA	chr4:147668518-147670854
chr4	147746560	147746696	+	MYSERV6-int	LTR	ERVK	chr4	147746560	147746562	-	ENSMUST00000118892.1,ENSMUSG00000083642.1	Gm13148	ENSMUSG00000083642.1	ENSMUST00000118892.1	processed_pseudogene	chr4:147745817-147746561
chr4	147868953	147869560	+	ERVL-B4-int	LTR	ERVL	chr4	147868978	147868980	+	ENSMUST00000094481.1,ENSMUSG00000070583.1	Fv1	ENSMUSG00000070583.1	ENSMUST00000094481.1	protein_coding	chr4:147868979-147870358
chr4	148287937	148287971	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	148287964	148287966	-	ENSMUST00000047720.8,ENSMUSG00000041544.11	Disp3	ENSMUSG00000041544.11	ENSMUST00000047720.8	protein_coding	chr4:148240264-148287965
chr4	148443484	148443683	-	B2_Mm2	SINE	B2	chr4	148443484	148443486	-	ENSMUST00000082714.2,ENSMUSG00000064648.2	Gm23303	ENSMUSG00000064648.2	ENSMUST00000082714.2	snRNA	chr4:148443334-148443485
chr4	148539126	148539230	+	U6	snRNA	snRNA	chr4	148539126	148539128	+	ENSMUST00000158456.1,ENSMUSG00000089081.1	Gm24002	ENSMUSG00000089081.1	ENSMUST00000158456.1	snRNA	chr4:148539127-148539230
chr4	148555692	148555776	+	U6	snRNA	snRNA	chr4	148555696	148555698	+	ENSMUST00000158000.1,ENSMUSG00000088625.1	Gm23318	ENSMUSG00000088625.1	ENSMUST00000158000.1	snRNA	chr4:148555697-148555804
chr4	148585933	148586468	-	RMER16-int	LTR	ERVK	chr4	148586006	148586008	-	ENSMUST00000138492.1,ENSMUSG00000087217.1	Gm13209	ENSMUSG00000087217.1	ENSMUST00000138492.1	antisense	chr4:148584721-148586007
chr4	149336060	149336259	+	B3A	SINE	B2	chr4	149336107	149336109	-	ENSMUST00000153430.1,ENSMUSG00000028960.18	Ube4b	ENSMUSG00000028960.18	ENSMUST00000153430.1	protein_coding	chr4:149335202-149336108
chr4	149337994	149338210	-	B4	SINE	B4	chr4	149338086	149338088	+	ENSMUST00000154000.1,ENSMUSG00000085807.1	Ube4bos2	ENSMUSG00000085807.1	ENSMUST00000154000.1	antisense	chr4:149338087-149338531
chr4	149387464	149387906	-	RMER4A	LTR	ERVK	chr4	149387661	149387663	-	ENSMUST00000138027.1,ENSMUSG00000028960.18	Ube4b	ENSMUSG00000028960.18	ENSMUST00000138027.1	protein_coding	chr4:149387081-149387662
chr4	149517183	149517282	-	U6	snRNA	snRNA	chr4	149517281	149517283	-	ENSMUST00000122697.1,ENSMUSG00000084646.1	Gm24381	ENSMUSG00000084646.1	ENSMUST00000122697.1	snRNA	chr4:149517179-149517282
chr4	149586571	149586708	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr4	149586637	149586639	+	ENSMUST00000039144.6,ENSMUSG00000039953.13	Clstn1	ENSMUSG00000039953.13	ENSMUST00000039144.6	protein_coding	chr4:149586638-149647899
chr4	149676080	149676170	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr4	149676092	149676094	-	ENSMUST00000137430.7,ENSMUSG00000039936.18	Pik3cd	ENSMUSG00000039936.18	ENSMUST00000137430.7	protein_coding	chr4:149673439-149676093
chr4	149701453	149701798	-	MTC	LTR	ERVL-MaLR	chr4	149701589	149701591	-	ENSMUST00000122059.7,ENSMUSG00000039936.18	Pik3cd	ENSMUSG00000039936.18	ENSMUST00000122059.7	protein_coding	chr4:149649170-149701590
chr4	149701453	149701798	-	MTC	LTR	ERVL-MaLR	chr4	149701589	149701591	-	ENSMUST00000124510.1,ENSMUSG00000039936.18	Pik3cd	ENSMUSG00000039936.18	ENSMUST00000124510.1	protein_coding	chr4:149673765-149701590
chr4	149730569	149730711	-	RSINE1	SINE	B4	chr4	149730686	149730688	-	ENSMUST00000139923.1,ENSMUSG00000044700.15	Tmem201	ENSMUSG00000044700.15	ENSMUST00000139923.1	protein_coding	chr4:149724864-149730687
chr4	149748352	149748697	+	ORR1A0	LTR	ERVL-MaLR	chr4	149748517	149748519	+	ENSMUST00000146250.1,ENSMUSG00000085403.1	Gm13068	ENSMUSG00000085403.1	ENSMUST00000146250.1	antisense	chr4:149748518-149749607
chr4	149748352	149748697	+	ORR1A0	LTR	ERVL-MaLR	chr4	149748531	149748533	+	ENSMUST00000129397.1,ENSMUSG00000085403.1	Gm13068	ENSMUSG00000085403.1	ENSMUST00000129397.1	antisense	chr4:149748532-149749482
chr4	149780693	149780803	+	L1MD	LINE	L1	chr4	149780713	149780715	-	ENSMUST00000134059.1,ENSMUSG00000084807.1	Gm13073	ENSMUSG00000084807.1	ENSMUST00000134059.1	lincRNA	chr4:149780024-149780714
chr4	149817731	149817821	+	5S	rRNA	rRNA	chr4	149817731	149817733	+	ENSMUST00000082864.1,ENSMUSG00000064798.1	n-R5s193	ENSMUSG00000064798.1	ENSMUST00000082864.1	rRNA	chr4:149817732-149817840
chr4	149817731	149817821	+	5S	rRNA	rRNA	chr4	149817763	149817765	+	ENSMUST00000199807.1,ENSMUSG00000106221.1	Gm47301	ENSMUSG00000106221.1	ENSMUST00000199807.1	miRNA	chr4:149817764-149817823
chr4	150157761	150157896	-	B4	SINE	B4	chr4	150157827	150157829	+	ENSMUST00000133379.1,ENSMUSG00000062064.6	Slc2a7	ENSMUSG00000062064.6	ENSMUST00000133379.1	protein_coding	chr4:150157828-150158700
chr4	150246364	150246444	+	(TAGA)n	Simple_repeat	Simple_repeat	chr4	150246396	150246398	+	ENSMUST00000133789.1,ENSMUSG00000063524.13	Eno1	ENSMUSG00000063524.13	ENSMUST00000133789.1	protein_coding	chr4:150246397-150247557
chr4	150406348	150406437	+	(CAGAGA)n	Simple_repeat	Simple_repeat	chr4	150406393	150406395	+	ENSMUST00000131600.1,ENSMUSG00000039852.17	Rere	ENSMUSG00000039852.17	ENSMUST00000131600.1	protein_coding	chr4:150406394-150470381
chr4	150678662	150678798	-	RSINE1	SINE	B4	chr4	150678791	150678793	-	ENSMUST00000149065.1,ENSMUSG00000085869.1	Gm16079	ENSMUSG00000085869.1	ENSMUST00000149065.1	lincRNA	chr4:150668248-150678792
chr4	150914110	150914228	-	PB1D9	SINE	Alu	chr4	150914205	150914207	-	ENSMUST00000146184.2,ENSMUSG00000028964.14	Park7	ENSMUSG00000028964.14	ENSMUST00000146184.2	protein_coding	chr4:150905250-150914206
chr4	150925085	150925382	+	L1M3	LINE	L1	chr4	150925305	150925307	+	ENSMUST00000105671.7,ENSMUSG00000028965.13	Tnfrsf9	ENSMUSG00000028965.13	ENSMUST00000105671.7	protein_coding	chr4:150925306-150945232
chr4	150929578	150929714	-	ID_B1	SINE	B4	chr4	150929675	150929677	+	ENSMUST00000060901.10,ENSMUSG00000028965.13	Tnfrsf9	ENSMUSG00000028965.13	ENSMUST00000060901.10	protein_coding	chr4:150929676-150945067
chr4	150964735	150964893	+	U1	snRNA	snRNA	chr4	150964734	150964736	+	ENSMUST00000082542.1,ENSMUSG00000064476.1	Gm23405	ENSMUSG00000064476.1	ENSMUST00000082542.1	snRNA	chr4:150964735-150964894
chr4	151108302	151108342	+	C-rich	Low_complexity	Low_complexity	chr4	151108302	151108304	-	ENSMUST00000131948.1,ENSMUSG00000014592.20	Camta1	ENSMUSG00000014592.20	ENSMUST00000131948.1	protein_coding	chr4:151086124-151108303
chr4	151861712	151861751	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	151861745	151861747	-	ENSMUST00000049790.13,ENSMUSG00000014592.20	Camta1	ENSMUSG00000014592.20	ENSMUST00000049790.13	protein_coding	chr4:151059526-151861746
chr4	151861712	151861751	+	(CCG)n	Simple_repeat	Simple_repeat	chr4	151861737	151861739	-	ENSMUST00000135780.1,ENSMUSG00000014592.20	Camta1	ENSMUSG00000014592.20	ENSMUST00000135780.1	protein_coding	chr4:151792230-151861738
chr4	151967720	151968065	+	MTC	LTR	ERVL-MaLR	chr4	151967837	151967839	+	ENSMUST00000142198.7,ENSMUSG00000039768.16	Dnajc11	ENSMUSG00000039768.16	ENSMUST00000142198.7	protein_coding	chr4:151967838-151974284
chr4	152086795	152086920	+	C-rich	Low_complexity	Low_complexity	chr4	152086857	152086859	+	ENSMUST00000118648.7,ENSMUSG00000039713.16	Plekhg5	ENSMUSG00000039713.16	ENSMUST00000118648.7	protein_coding	chr4:152086858-152115390
chr4	152202140	152202265	-	B1_Mur1	SINE	Alu	chr4	152202141	152202143	-	ENSMUST00000184331.1,ENSMUSG00000098385.1	Gm27500	ENSMUSG00000098385.1	ENSMUST00000184331.1	misc_RNA	chr4:152201807-152202142
chr4	152203847	152204143	-	MERV1_LTR	LTR	ERV1	chr4	152203925	152203927	+	ENSMUST00000127752.1,ENSMUSG00000085724.1	Gm13096	ENSMUSG00000085724.1	ENSMUST00000127752.1	sense_intronic	chr4:152203926-152204467
chr4	152297587	152297758	+	(CCGGA)n	Simple_repeat	Simple_repeat	chr4	152297655	152297657	+	ENSMUST00000125617.1,ENSMUSG00000039662.16	Icmt	ENSMUSG00000039662.16	ENSMUST00000125617.1	protein_coding	chr4:152297656-152300754
chr4	152316298	152316362	-	B3A	SINE	B2	chr4	152316327	152316329	-	ENSMUST00000146496.1,ENSMUSG00000058498.12	Rnf207	ENSMUSG00000058498.12	ENSMUST00000146496.1	protein_coding	chr4:152315461-152316328
chr4	152338639	152338742	+	GC_rich	Low_complexity	Low_complexity	chr4	152338650	152338652	+	ENSMUST00000030775.11,ENSMUSG00000005045.16	Chd5	ENSMUSG00000005045.16	ENSMUST00000030775.11	protein_coding	chr4:152338651-152390194
chr4	152338639	152338742	+	GC_rich	Low_complexity	Low_complexity	chr4	152338650	152338652	+	ENSMUST00000164662.7,ENSMUSG00000005045.16	Chd5	ENSMUSG00000005045.16	ENSMUST00000164662.7	protein_coding	chr4:152338651-152390194
chr4	152353621	152353688	+	(GAA)n	Simple_repeat	Simple_repeat	chr4	152353640	152353642	-	ENSMUST00000145163.1,ENSMUSG00000085179.1	Gm13645	ENSMUSG00000085179.1	ENSMUST00000145163.1	processed_transcript	chr4:152352198-152353641
chr4	153146838	153147006	+	MTD	LTR	ERVL-MaLR	chr4	153146942	153146944	-	ENSMUST00000151703.1,ENSMUSG00000085648.1	Gm13173	ENSMUSG00000085648.1	ENSMUST00000151703.1	lincRNA	chr4:153145590-153146943
chr4	153950495	153950953	+	RLTR31C_MM	LTR	ERVK	chr4	153950502	153950504	-	ENSMUST00000141582.1,ENSMUSG00000086272.1	BC039966	ENSMUSG00000086272.1	ENSMUST00000141582.1	antisense	chr4:153947633-153950503
chr4	153972379	153972522	+	CT-rich	Low_complexity	Low_complexity	chr4	153972408	153972410	-	ENSMUST00000219093.1,ENSMUSG00000029027.9	Dffb	ENSMUSG00000029027.9	ENSMUST00000219093.1	protein_coding	chr4:153970012-153972409
chr4	154048128	154048499	-	RLTR18	LTR	ERVK	chr4	154048127	154048129	-	ENSMUST00000117605.1,ENSMUSG00000082073.1	Gm13114	ENSMUSG00000082073.1	ENSMUST00000117605.1	processed_pseudogene	chr4:154048023-154048128
chr4	154160656	154160695	+	GC_rich	Low_complexity	Low_complexity	chr4	154160665	154160667	-	ENSMUST00000030896.14,ENSMUSG00000029030.14	Tprgl	ENSMUSG00000029030.14	ENSMUST00000030896.14	protein_coding	chr4:154157485-154160666
chr4	154160656	154160695	+	GC_rich	Low_complexity	Low_complexity	chr4	154160665	154160667	-	ENSMUST00000134492.1,ENSMUSG00000029030.14	Tprgl	ENSMUSG00000029030.14	ENSMUST00000134492.1	protein_coding	chr4:154158140-154160666
chr4	154170633	154170750	+	G-rich	Low_complexity	Low_complexity	chr4	154170729	154170731	+	ENSMUST00000030897.14,ENSMUSG00000057751.14	Megf6	ENSMUSG00000057751.14	ENSMUST00000030897.14	protein_coding	chr4:154170730-154275713
chr4	154264515	154264636	-	B1_Mm	SINE	Alu	chr4	154264614	154264616	+	ENSMUST00000127088.7,ENSMUSG00000057751.14	Megf6	ENSMUSG00000057751.14	ENSMUST00000127088.7	protein_coding	chr4:154264615-154275184
chr4	155222531	155222680	+	C-rich	Low_complexity	Low_complexity	chr4	155222534	155222536	-	ENSMUST00000084103.9,ENSMUSG00000029050.15	Ski	ENSMUSG00000029050.15	ENSMUST00000084103.9	protein_coding	chr4:155154075-155222535
chr4	155222531	155222680	+	C-rich	Low_complexity	Low_complexity	chr4	155222591	155222593	-	ENSMUST00000030917.5,ENSMUSG00000029050.15	Ski	ENSMUSG00000029050.15	ENSMUST00000030917.5	protein_coding	chr4:155154075-155222592
chr4	155398104	155398134	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr4	155398111	155398113	-	ENSMUST00000030925.2,ENSMUSG00000029054.8	Gabrd	ENSMUSG00000029054.8	ENSMUST00000030925.2	protein_coding	chr4:155384980-155398112
chr4	155414662	155414907	-	L1MC5a	LINE	L1	chr4	155414776	155414778	-	ENSMUST00000152780.1,ENSMUSG00000084803.8	5830444B04Rik	ENSMUSG00000084803.8	ENSMUST00000152780.1	processed_transcript	chr4:155408309-155414777
chr4	155414662	155414907	-	L1MC5a	LINE	L1	chr4	155414755	155414757	-	ENSMUST00000166858.1,ENSMUSG00000084803.8	5830444B04Rik	ENSMUSG00000084803.8	ENSMUST00000166858.1	processed_transcript	chr4:155409518-155414756
chr4	155421681	155422048	+	IAPLTR1_Mm	LTR	ERVK	chr4	155421703	155421705	-	ENSMUST00000166921.7,ENSMUSG00000084803.8	5830444B04Rik	ENSMUSG00000084803.8	ENSMUST00000166921.7	processed_transcript	chr4:155398763-155421704
chr4	155421681	155422048	+	IAPLTR1_Mm	LTR	ERVK	chr4	155421694	155421696	-	ENSMUST00000145520.2,ENSMUSG00000084803.8	5830444B04Rik	ENSMUSG00000084803.8	ENSMUST00000145520.2	processed_transcript	chr4:155408310-155421695
chr4	155421681	155422048	+	IAPLTR1_Mm	LTR	ERVK	chr4	155421905	155421907	+	ENSMUST00000050128.10,ENSMUSG00000078490.9	Cfap74	ENSMUSG00000078490.9	ENSMUST00000050128.10	protein_coding	chr4:155421906-155447944
chr4	155492807	155492985	-	B3	SINE	B2	chr4	155492908	155492910	+	ENSMUST00000176411.7,ENSMUSG00000029064.15	Gnb1	ENSMUSG00000029064.15	ENSMUST00000176411.7	protein_coding	chr4:155492909-155543087
chr4	155542871	155542974	-	PB1D9	SINE	Alu	chr4	155542927	155542929	+	ENSMUST00000175705.1,ENSMUSG00000029064.15	Gnb1	ENSMUSG00000029064.15	ENSMUST00000175705.1	protein_coding	chr4:155542928-155555205
chr4	155616393	155616512	-	B1_Mus2	SINE	Alu	chr4	155616408	155616410	+	ENSMUST00000128841.1,ENSMUSG00000085063.1	Gm16024	ENSMUSG00000085063.1	ENSMUST00000128841.1	antisense	chr4:155616409-155616787
chr4	155645404	155645546	-	B1_Mus1	SINE	Alu	chr4	155645407	155645409	-	ENSMUST00000115821.2,ENSMUSG00000073682.3	Gm10563	ENSMUSG00000073682.3	ENSMUST00000115821.2	protein_coding	chr4:155614413-155645408
chr4	155647187	155647362	-	B1_Mus2	SINE	Alu	chr4	155647202	155647204	+	ENSMUST00000155100.7,ENSMUSG00000029062.14	Cdk11b	ENSMUSG00000029062.14	ENSMUST00000155100.7	protein_coding	chr4:155647203-155648405
chr4	155647363	155647442	-	PB1D7	SINE	Alu	chr4	155647367	155647369	+	ENSMUST00000143196.1,ENSMUSG00000029062.14	Cdk11b	ENSMUSG00000029062.14	ENSMUST00000143196.1	protein_coding	chr4:155647368-155648292
chr4	155734733	155734825	+	GA-rich	Low_complexity	Low_complexity	chr4	155734799	155734801	+	ENSMUST00000147721.7,ENSMUSG00000084845.9	Tmem240	ENSMUSG00000084845.9	ENSMUST00000147721.7	protein_coding	chr4:155734800-155740142
chr4	155734733	155734825	+	GA-rich	Low_complexity	Low_complexity	chr4	155734803	155734805	+	ENSMUST00000176526.1,ENSMUSG00000084845.9	Tmem240	ENSMUSG00000084845.9	ENSMUST00000176526.1	protein_coding	chr4:155734804-155740564
chr4	155789562	155789708	-	B1_Mus1	SINE	Alu	chr4	155789580	155789582	+	ENSMUST00000185136.1,ENSMUSG00000098638.1	Gm27743	ENSMUSG00000098638.1	ENSMUST00000185136.1	miRNA	chr4:155789581-155789706
chr4	155802739	155802909	-	B2_Mm1a	SINE	B2	chr4	155802877	155802879	+	ENSMUST00000184339.1,ENSMUSG00000029066.12	Mrpl20	ENSMUSG00000029066.12	ENSMUST00000184339.1	protein_coding	chr4:155802878-155803642
chr4	155842212	155842377	+	(TTCC)n	Simple_repeat	Simple_repeat	chr4	155842303	155842305	+	ENSMUST00000143886.1,ENSMUSG00000029070.9	Mxra8	ENSMUSG00000029070.9	ENSMUST00000143886.1	protein_coding	chr4:155842304-155842974
chr4	155842391	155842520	-	B1_Mur4	SINE	Alu	chr4	155842450	155842452	+	ENSMUST00000141766.7,ENSMUSG00000029070.9	Mxra8	ENSMUSG00000029070.9	ENSMUST00000141766.7	protein_coding	chr4:155842451-155843464
chr4	155842391	155842520	-	B1_Mur4	SINE	Alu	chr4	155842471	155842473	+	ENSMUST00000126487.1,ENSMUSG00000029070.9	Mxra8	ENSMUSG00000029070.9	ENSMUST00000126487.1	protein_coding	chr4:155842472-155843577
chr4	155847539	155847657	+	G-rich	Low_complexity	Low_complexity	chr4	155847565	155847567	+	ENSMUST00000133184.7,ENSMUSG00000029071.16	Dvl1	ENSMUSG00000029071.16	ENSMUST00000133184.7	protein_coding	chr4:155847566-155859303
chr4	155847539	155847657	+	G-rich	Low_complexity	Low_complexity	chr4	155847585	155847587	+	ENSMUST00000141539.7,ENSMUSG00000029071.16	Dvl1	ENSMUSG00000029071.16	ENSMUST00000141539.7	protein_coding	chr4:155847586-155859303
chr4	155892269	155892293	+	(CGGG)n	Simple_repeat	Simple_repeat	chr4	155892271	155892273	+	ENSMUST00000131168.7,ENSMUSG00000029033.16	Acap3	ENSMUSG00000029033.16	ENSMUST00000131168.7	protein_coding	chr4:155892272-155899691
chr4	155911429	155911863	+	MT2_Mm	LTR	ERVL	chr4	155911629	155911631	+	ENSMUST00000178126.1,ENSMUSG00000096174.1	Gm22991	ENSMUSG00000096174.1	ENSMUST00000178126.1	miRNA	chr4:155911630-155911750
chr4	156031295	156031811	-	RLTR20B4_MM	LTR	ERVK	chr4	156031642	156031644	-	ENSMUST00000151836.7,ENSMUSG00000087381.8	Gm16008	ENSMUSG00000087381.8	ENSMUST00000151836.7	antisense	chr4:156023727-156031643
chr4	156031295	156031811	-	RLTR20B4_MM	LTR	ERVK	chr4	156031621	156031623	-	ENSMUST00000126009.1,ENSMUSG00000087381.8	Gm16008	ENSMUSG00000087381.8	ENSMUST00000126009.1	antisense	chr4:156026297-156031622
chr5	3500049	3500607	-	Lx10	LINE	L1	chr5	3500071	3500073	-	ENSMUST00000196630.1,ENSMUSG00000105534.1	Gm42435	ENSMUSG00000105534.1	ENSMUST00000196630.1	antisense	chr5:3498625-3500072
chr5	3561153	3561275	+	5S	rRNA	rRNA	chr5	3561153	3561155	+	ENSMUST00000083110.1,ENSMUSG00000065044.1	n-R5s169	ENSMUSG00000065044.1	ENSMUST00000083110.1	rRNA	chr5:3561154-3561273
chr5	3566412	3566877	-	RLTR48C	LTR	ERV1	chr5	3566835	3566837	+	ENSMUST00000200354.1,ENSMUSG00000058503.11	Fam133b	ENSMUSG00000058503.11	ENSMUST00000200354.1	protein_coding	chr5:3566836-3569031
chr5	3585052	3585190	+	B1_Mm	SINE	Alu	chr5	3585111	3585113	+	ENSMUST00000198718.1,ENSMUSG00000104891.1	2510017J16Rik	ENSMUSG00000104891.1	ENSMUST00000198718.1	antisense	chr5:3585112-3586374
chr5	3592135	3592265	-	B1_Mus2	SINE	Alu	chr5	3592141	3592143	-	ENSMUST00000135809.1,ENSMUSG00000040302.17	Rbm48	ENSMUSG00000040302.17	ENSMUST00000135809.1	protein_coding	chr5:3590779-3592142
chr5	3619650	3619793	-	B1_Mus1	SINE	Alu	chr5	3619770	3619772	+	ENSMUST00000199035.1,ENSMUSG00000005907.14	Pex1	ENSMUSG00000005907.14	ENSMUST00000199035.1	protein_coding	chr5:3619771-3620757
chr5	3627199	3627341	-	L2a	LINE	L2	chr5	3627203	3627205	+	ENSMUST00000196692.1,ENSMUSG00000005907.14	Pex1	ENSMUSG00000005907.14	ENSMUST00000196692.1	protein_coding	chr5:3627204-3627841
chr5	3652452	3652577	-	Lx10	LINE	L1	chr5	3652543	3652545	+	ENSMUST00000175538.1,ENSMUSG00000093279.1	Gm26238	ENSMUSG00000093279.1	ENSMUST00000175538.1	miRNA	chr5:3652544-3652660
chr5	3655596	3657055	+	L1_Mus2	LINE	L1	chr5	3657003	3657005	+	ENSMUST00000014673.8,ENSMUSG00000014529.9	Tmbim7	ENSMUSG00000014529.9	ENSMUST00000014673.8	protein_coding	chr5:3657004-3679416
chr5	3695942	3696027	+	(CCCTAA)n	Simple_repeat	Simple_repeat	chr5	3695963	3695965	+	ENSMUST00000174957.1,ENSMUSG00000092698.1	Gm22926	ENSMUSG00000092698.1	ENSMUST00000174957.1	miRNA	chr5:3695964-3696031
chr5	3823092	3823232	-	ID_B1	SINE	B4	chr5	3823157	3823159	+	ENSMUST00000199234.1,ENSMUSG00000000600.15	Krit1	ENSMUSG00000000600.15	ENSMUST00000199234.1	protein_coding	chr5:3823158-3825071
chr5	3827129	3827573	-	L1VL2	LINE	L1	chr5	3827537	3827539	+	ENSMUST00000200004.1,ENSMUSG00000000600.15	Krit1	ENSMUSG00000000600.15	ENSMUST00000200004.1	protein_coding	chr5:3827538-3831018
chr5	4033268	4033922	-	L1Md_A	LINE	L1	chr5	4033758	4033760	+	ENSMUST00000196350.1,ENSMUSG00000040407.17	Akap9	ENSMUSG00000040407.17	ENSMUST00000196350.1	protein_coding	chr5:4033759-4036081
chr5	4059205	4059271	-	L1M5	LINE	L1	chr5	4059249	4059251	+	ENSMUST00000196918.1,ENSMUSG00000040407.17	Akap9	ENSMUSG00000040407.17	ENSMUST00000196918.1	protein_coding	chr5:4059250-4060925
chr5	4798892	4799199	-	RMER19B	LTR	ERVK	chr5	4799093	4799095	-	ENSMUST00000196517.1,ENSMUSG00000105560.1	Gm42744	ENSMUSG00000105560.1	ENSMUST00000196517.1	lincRNA	chr5:4784753-4799094
chr5	5311460	5311628	+	(GAAA)n	Simple_repeat	Simple_repeat	chr5	5311622	5311624	-	ENSMUST00000198817.1,ENSMUSG00000104867.1	Gm43728	ENSMUSG00000104867.1	ENSMUST00000198817.1	sense_intronic	chr5:5309002-5311623
chr5	5420178	5420423	-	ORR1F	LTR	ERVL-MaLR	chr5	5420311	5420313	-	ENSMUST00000167567.1,ENSMUSG00000028926.15	Cdk14	ENSMUSG00000028926.15	ENSMUST00000167567.1	protein_coding	chr5:5227215-5420312
chr5	5622087	5622394	+	MLT1A0	LTR	ERVL-MaLR	chr5	5622178	5622180	-	ENSMUST00000199314.4,ENSMUSG00000040473.15	Cfap69	ENSMUSG00000040473.15	ENSMUST00000199314.4	protein_coding	chr5:5580982-5622179
chr5	5696701	5697078	+	ORR1C1	LTR	ERVL-MaLR	chr5	5696857	5696859	+	ENSMUST00000197972.1,ENSMUSG00000105996.1	Gm43219	ENSMUSG00000105996.1	ENSMUST00000197972.1	TEC	chr5:5696858-5698794
chr5	5781494	5781571	-	L1MEg	LINE	L1	chr5	5781529	5781531	+	ENSMUST00000181751.1,ENSMUSG00000097554.1	Gm26825	ENSMUSG00000097554.1	ENSMUST00000181751.1	lincRNA	chr5:5781530-5783636
chr5	6014860	6015024	-	U1	snRNA	snRNA	chr5	6015023	6015025	-	ENSMUST00000158067.1,ENSMUSG00000088692.1	Gm23838	ENSMUSG00000088692.1	ENSMUST00000158067.1	snRNA	chr5:6014863-6015024
chr5	6309483	6315398	-	L1Md_F2	LINE	L1	chr5	6313990	6313992	-	ENSMUST00000197319.1,ENSMUSG00000105370.1	Gm42718	ENSMUSG00000105370.1	ENSMUST00000197319.1	processed_pseudogene	chr5:6311311-6313991
chr5	6410437	6410530	+	U6	snRNA	snRNA	chr5	6410437	6410439	+	ENSMUST00000157755.1,ENSMUSG00000088380.1	Gm24686	ENSMUSG00000088380.1	ENSMUST00000157755.1	snRNA	chr5:6410438-6410530
chr5	6413824	6415704	-	Lx3A	LINE	L1	chr5	6414398	6414400	+	ENSMUST00000197468.1,ENSMUSG00000106064.1	Gm40263	ENSMUSG00000106064.1	ENSMUST00000197468.1	lincRNA	chr5:6414399-6427065
chr5	7235787	7236304	-	L1Md_F2	LINE	L1	chr5	7235836	7235838	-	ENSMUST00000200110.1,ENSMUSG00000105711.1	Gm42598	ENSMUSG00000105711.1	ENSMUST00000200110.1	TEC	chr5:7233401-7235837
chr5	7262026	7264210	+	Lx7	LINE	L1	chr5	7262398	7262400	-	ENSMUST00000196663.1,ENSMUSG00000105980.1	Gm42597	ENSMUSG00000105980.1	ENSMUST00000196663.1	TEC	chr5:7260856-7262399
chr5	8052536	8052711	-	ORR1F	LTR	ERVL-MaLR	chr5	8052706	8052708	-	ENSMUST00000146887.1,ENSMUSG00000086528.1	Gm15731	ENSMUSG00000086528.1	ENSMUST00000146887.1	antisense	chr5:8037294-8052707
chr5	8203746	8204182	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr5	8203974	8203976	-	ENSMUST00000179161.1,ENSMUSG00000095290.1	Gm24196	ENSMUSG00000095290.1	ENSMUST00000179161.1	miRNA	chr5:8203866-8203975
chr5	8422842	8422870	+	GC_rich	Low_complexity	Low_complexity	chr5	8422849	8422851	+	ENSMUST00000066921.9,ENSMUSG00000054099.11	Slc25a40	ENSMUSG00000054099.11	ENSMUST00000066921.9	protein_coding	chr5:8422850-8454797
chr5	8422842	8422870	+	GC_rich	Low_complexity	Low_complexity	chr5	8422857	8422859	+	ENSMUST00000199817.4,ENSMUSG00000054099.11	Slc25a40	ENSMUSG00000054099.11	ENSMUST00000199817.4	protein_coding	chr5:8422858-8428634
chr5	8422842	8422870	+	GC_rich	Low_complexity	Low_complexity	chr5	8422857	8422859	+	ENSMUST00000196727.4,ENSMUSG00000054099.11	Slc25a40	ENSMUSG00000054099.11	ENSMUST00000196727.4	protein_coding	chr5:8422858-8454789
chr5	8514805	8514927	-	RSINE1	SINE	B4	chr5	8514851	8514853	-	ENSMUST00000200378.1,ENSMUSG00000105740.1	Gm42685	ENSMUSG00000105740.1	ENSMUST00000200378.1	TEC	chr5:8512463-8514852
chr5	8735297	8735791	-	RLTR19-int	LTR	ERVK	chr5	8735767	8735769	-	ENSMUST00000199172.1,ENSMUSG00000104535.1	Gm42686	ENSMUSG00000104535.1	ENSMUST00000199172.1	TEC	chr5:8731661-8735768
chr5	8840183	8840579	+	MTA_Mm	LTR	ERVL-MaLR	chr5	8840360	8840362	+	ENSMUST00000197961.1,ENSMUSG00000028970.9	Abcb1b	ENSMUSG00000028970.9	ENSMUST00000197961.1	protein_coding	chr5:8840361-8853626
chr5	8849307	8849376	-	MIRc	SINE	MIR	chr5	8849332	8849334	+	ENSMUST00000196819.1,ENSMUSG00000028970.9	Abcb1b	ENSMUSG00000028970.9	ENSMUST00000196819.1	protein_coding	chr5:8849333-8849821
chr5	8999553	9000000	-	RLTR13E	LTR	ERVK	chr5	8999668	8999670	-	ENSMUST00000146928.1,ENSMUSG00000084923.1	Gm15611	ENSMUSG00000084923.1	ENSMUST00000146928.1	lincRNA	chr5:8998402-8999669
chr5	9034828	9035021	-	L1MD2	LINE	L1	chr5	9034880	9034882	+	ENSMUST00000225021.1,ENSMUSG00000114430.1	Gm40264	ENSMUSG00000114430.1	ENSMUST00000225021.1	lincRNA	chr5:9034881-9040817
chr5	9035019	9035439	+	Lx10	LINE	L1	chr5	9035123	9035125	+	ENSMUST00000224996.1,ENSMUSG00000114430.1	Gm40264	ENSMUSG00000114430.1	ENSMUST00000224996.1	lincRNA	chr5:9035124-9061316
chr5	9152888	9153069	+	B3	SINE	B2	chr5	9152937	9152939	-	ENSMUST00000185100.1,ENSMUSG00000042508.16	Dmtf1	ENSMUSG00000042508.16	ENSMUST00000185100.1	protein_coding	chr5:9150434-9152938
chr5	9153069	9153231	-	L2c	LINE	L2	chr5	9153147	9153149	-	ENSMUST00000184401.7,ENSMUSG00000042508.16	Dmtf1	ENSMUSG00000042508.16	ENSMUST00000184401.7	protein_coding	chr5:9118877-9153148
chr5	9155637	9155808	-	B2_Mm2	SINE	B2	chr5	9155732	9155734	+	ENSMUST00000200542.1,ENSMUSG00000079659.5	Tmem243	ENSMUSG00000079659.5	ENSMUST00000200542.1	protein_coding	chr5:9155733-9160986
chr5	9161753	9161826	+	GC_rich	Low_complexity	Low_complexity	chr5	9161775	9161777	-	ENSMUST00000071921.12,ENSMUSG00000042508.16	Dmtf1	ENSMUSG00000042508.16	ENSMUST00000071921.12	protein_coding	chr5:9118801-9161776
chr5	9161753	9161826	+	GC_rich	Low_complexity	Low_complexity	chr5	9161758	9161760	-	ENSMUST00000184888.7,ENSMUSG00000042508.16	Dmtf1	ENSMUSG00000042508.16	ENSMUST00000184888.7	protein_coding	chr5:9118873-9161759
chr5	9169062	9169119	+	U2	snRNA	snRNA	chr5	9169062	9169064	+	ENSMUST00000158937.1,ENSMUSG00000089562.1	Gm24666	ENSMUSG00000089562.1	ENSMUST00000158937.1	snRNA	chr5:9169063-9169229
chr5	9266024	9266120	+	C-rich	Low_complexity	Low_complexity	chr5	9266117	9266119	+	ENSMUST00000155764.7,ENSMUSG00000056004.16	9330182L06Rik	ENSMUSG00000056004.16	ENSMUST00000155764.7	protein_coding	chr5:9266118-9479736
chr5	9416988	9417634	+	Lx8	LINE	L1	chr5	9417614	9417616	+	ENSMUST00000142202.1,ENSMUSG00000056004.16	9330182L06Rik	ENSMUSG00000056004.16	ENSMUST00000142202.1	protein_coding	chr5:9417615-9422330
chr5	9601911	9602851	+	L1_Mus1	LINE	L1	chr5	9602606	9602608	-	ENSMUST00000199761.1,ENSMUSG00000106637.1	Gm42455	ENSMUSG00000106637.1	ENSMUST00000199761.1	TEC	chr5:9599872-9602607
chr5	9758839	9758942	-	U6	snRNA	snRNA	chr5	9758939	9758941	-	ENSMUST00000158774.1,ENSMUSG00000089399.1	Gm23312	ENSMUSG00000089399.1	ENSMUST00000158774.1	snRNA	chr5:9758839-9758940
chr5	10187731	10188077	+	ORR1A0	LTR	ERVL-MaLR	chr5	10187865	10187867	+	ENSMUST00000190891.6,ENSMUSG00000073226.9	Gm10482	ENSMUSG00000073226.9	ENSMUST00000190891.6	lincRNA	chr5:10187866-10237890
chr5	10187731	10188077	+	ORR1A0	LTR	ERVL-MaLR	chr5	10187871	10187873	+	ENSMUST00000189825.1,ENSMUSG00000073226.9	Gm10482	ENSMUSG00000073226.9	ENSMUST00000189825.1	lincRNA	chr5:10187872-10237755
chr5	10249117	10249459	+	ORR1A3-int	LTR	ERVL-MaLR	chr5	10249141	10249143	+	ENSMUST00000196240.1,ENSMUSG00000105157.1	Gm31831	ENSMUSG00000105157.1	ENSMUST00000196240.1	lincRNA	chr5:10249142-10340777
chr5	10743053	10743594	+	L1_Mus1	LINE	L1	chr5	10743174	10743176	-	ENSMUST00000196019.1,ENSMUSG00000105657.1	Gm42833	ENSMUSG00000105657.1	ENSMUST00000196019.1	TEC	chr5:10741052-10743175
chr5	10862953	10865327	+	Lx2A1	LINE	L1	chr5	10865028	10865030	+	ENSMUST00000095015.10,ENSMUSG00000091422.8	Gm6455	ENSMUSG00000091422.8	ENSMUST00000095015.10	lincRNA	chr5:10865029-10870808
chr5	10944659	10947029	+	Lx2A1	LINE	L1	chr5	10946570	10946572	-	ENSMUST00000199217.1,ENSMUSG00000106652.1	Gm43358	ENSMUSG00000106652.1	ENSMUST00000199217.1	lincRNA	chr5:10930423-10946571
chr5	11036991	11039377	+	Lx2A1	LINE	L1	chr5	11038938	11038940	-	ENSMUST00000199522.1,ENSMUSG00000105978.1	Gm43492	ENSMUSG00000105978.1	ENSMUST00000199522.1	lincRNA	chr5:11022260-11038939
chr5	11124507	11126879	+	Lx2A1	LINE	L1	chr5	11126454	11126456	-	ENSMUST00000197789.1,ENSMUSG00000106506.1	4930558F17Rik	ENSMUSG00000106506.1	ENSMUST00000197789.1	lincRNA	chr5:11109800-11126455
chr5	11179904	11182283	+	Lx2A1	LINE	L1	chr5	11181824	11181826	-	ENSMUST00000196310.1,ENSMUSG00000104982.1	Gm32554	ENSMUSG00000104982.1	ENSMUST00000196310.1	lincRNA	chr5:11165537-11181825
chr5	11252796	11255177	+	Lx2A1	LINE	L1	chr5	11254752	11254754	-	ENSMUST00000197751.1,ENSMUSG00000104811.1	Gm33093	ENSMUSG00000104811.1	ENSMUST00000197751.1	lincRNA	chr5:11238536-11254753
chr5	11338370	11340763	+	Lx2A1	LINE	L1	chr5	11340296	11340298	-	ENSMUST00000197419.1,ENSMUSG00000106148.1	Gm32877	ENSMUSG00000106148.1	ENSMUST00000197419.1	lincRNA	chr5:11320804-11340297
chr5	11413281	11415662	+	Lx2A1	LINE	L1	chr5	11415203	11415205	-	ENSMUST00000196572.1,ENSMUSG00000106034.1	1700108N06Rik	ENSMUSG00000106034.1	ENSMUST00000196572.1	lincRNA	chr5:11400212-11415204
chr5	11459533	11463950	+	L1Md_T	LINE	L1	chr5	11460423	11460425	+	ENSMUST00000196320.1,ENSMUSG00000105549.1	Gm43540	ENSMUSG00000105549.1	ENSMUST00000196320.1	processed_pseudogene	chr5:11460424-11464271
chr5	11500000	11501910	+	Lx2A1	LINE	L1	chr5	11501451	11501453	-	ENSMUST00000197456.1,ENSMUSG00000105688.1	4930437M23Rik	ENSMUSG00000105688.1	ENSMUST00000197456.1	lincRNA	chr5:11485335-11501452
chr5	11591831	11594203	+	Lx2A1	LINE	L1	chr5	11593778	11593780	-	ENSMUST00000199000.1,ENSMUSG00000104789.1	Gm43640	ENSMUSG00000104789.1	ENSMUST00000199000.1	lincRNA	chr5:11577108-11593779
chr5	11678875	11681247	+	Lx2A1	LINE	L1	chr5	11680822	11680824	-	ENSMUST00000199294.1,ENSMUSG00000105299.1	Gm33847	ENSMUSG00000105299.1	ENSMUST00000199294.1	lincRNA	chr5:11664167-11680823
chr5	11767381	11769760	+	Lx2A1	LINE	L1	chr5	11769282	11769284	-	ENSMUST00000185360.2,ENSMUSG00000099391.2	1700003C15Rik	ENSMUSG00000099391.2	ENSMUST00000185360.2	lincRNA	chr5:11689253-11769283
chr5	11767381	11769760	+	Lx2A1	LINE	L1	chr5	11769307	11769309	-	ENSMUST00000188236.1,ENSMUSG00000099391.2	1700003C15Rik	ENSMUSG00000099391.2	ENSMUST00000188236.1	lincRNA	chr5:11749832-11769308
chr5	11842402	11844783	+	Lx2A1	LINE	L1	chr5	11844358	11844360	-	ENSMUST00000199106.1,ENSMUSG00000105479.1	Gm43132	ENSMUSG00000105479.1	ENSMUST00000199106.1	lincRNA	chr5:11828046-11844359
chr5	11914916	11917294	+	Lx2A1	LINE	L1	chr5	11916835	11916837	-	ENSMUST00000200042.1,ENSMUSG00000106026.1	Gm43131	ENSMUSG00000106026.1	ENSMUST00000200042.1	lincRNA	chr5:11900483-11916836
chr5	12089341	12089714	+	IAPLTR2a	LTR	ERVK	chr5	12089536	12089538	+	ENSMUST00000188502.1,ENSMUSG00000099516.1	Gm29066	ENSMUSG00000099516.1	ENSMUST00000188502.1	lincRNA	chr5:12089537-12097647
chr5	12144806	12145158	+	RLTR10	LTR	ERVK	chr5	12144960	12144962	-	ENSMUST00000198917.1,ENSMUSG00000105155.1	Gm42910	ENSMUSG00000105155.1	ENSMUST00000198917.1	TEC	chr5:12142041-12144961
chr5	12355564	12355854	-	MT2B1	LTR	ERVL	chr5	12355786	12355788	-	ENSMUST00000198497.1,ENSMUSG00000104941.1	Gm8953	ENSMUSG00000104941.1	ENSMUST00000198497.1	lincRNA	chr5:12354697-12355787
chr5	12940158	12940679	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr5	12940369	12940371	+	ENSMUST00000180047.1,ENSMUSG00000094310.1	Gm23243	ENSMUSG00000094310.1	ENSMUST00000180047.1	miRNA	chr5:12940370-12940479
chr5	13398992	13399088	+	(CA)n	Simple_repeat	Simple_repeat	chr5	13398996	13398998	+	ENSMUST00000137798.7,ENSMUSG00000028883.17	Sema3a	ENSMUSG00000028883.17	ENSMUST00000137798.7	protein_coding	chr5:13398997-13599348
chr5	13480580	13481271	+	RMER6C	LTR	ERVK	chr5	13481027	13481029	+	ENSMUST00000197721.1,ENSMUSG00000105750.1	Gm43130	ENSMUSG00000105750.1	ENSMUST00000197721.1	TEC	chr5:13481028-13484934
chr5	13603920	13604045	-	ID_B1	SINE	B4	chr5	13604034	13604036	+	ENSMUST00000200088.1,ENSMUSG00000105366.1	Gm43719	ENSMUSG00000105366.1	ENSMUST00000200088.1	TEC	chr5:13604035-13606233
chr5	13807716	13808750	+	Lx2A1	LINE	L1	chr5	13808342	13808344	-	ENSMUST00000199961.1,ENSMUSG00000104638.1	4930568A13Rik	ENSMUSG00000104638.1	ENSMUST00000199961.1	lincRNA	chr5:13748111-13808343
chr5	13839520	13839759	-	RMER6-int	LTR	ERVK	chr5	13839534	13839536	-	ENSMUST00000199133.1,ENSMUSG00000106615.1	Gm8968	ENSMUSG00000106615.1	ENSMUST00000199133.1	processed_pseudogene	chr5:13838233-13839535
chr5	13877009	13877166	-	L1_Mur2	LINE	L1	chr5	13877165	13877167	+	ENSMUST00000198653.1,ENSMUSG00000105521.1	Gm35702	ENSMUSG00000105521.1	ENSMUST00000198653.1	processed_pseudogene	chr5:13877166-13877676
chr5	13902589	13902951	-	ORR1B2	LTR	ERVL-MaLR	chr5	13902873	13902875	-	ENSMUST00000158619.1,ENSMUSG00000089244.1	Gm24054	ENSMUSG00000089244.1	ENSMUST00000158619.1	miRNA	chr5:13902770-13902874
chr5	14027872	14027916	+	(T)n	Simple_repeat	Simple_repeat	chr5	14027893	14027895	+	ENSMUST00000197239.1,ENSMUSG00000105528.1	Gm43519	ENSMUSG00000105528.1	ENSMUST00000197239.1	TEC	chr5:14027894-14029765
chr5	14073959	14074355	-	BGLII_Mus	LTR	ERVK	chr5	14074156	14074158	-	ENSMUST00000154338.1,ENSMUSG00000085352.1	Gm4128	ENSMUSG00000085352.1	ENSMUST00000154338.1	antisense	chr5:14056438-14074157
chr5	14242414	14242561	+	Lx8b	LINE	L1	chr5	14242461	14242463	+	ENSMUST00000197397.1,ENSMUSG00000106310.1	Gm43523	ENSMUSG00000106310.1	ENSMUST00000197397.1	TEC	chr5:14242462-14245339
chr5	14514834	14514950	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr5	14514917	14514919	+	ENSMUST00000182407.7,ENSMUSG00000061601.15	Pclo	ENSMUSG00000061601.15	ENSMUST00000182407.7	protein_coding	chr5:14514918-14795993
chr5	14514834	14514950	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr5	14514917	14514919	+	ENSMUST00000030691.16,ENSMUSG00000061601.15	Pclo	ENSMUSG00000061601.15	ENSMUST00000030691.16	protein_coding	chr5:14514918-14863459
chr5	14563326	14564137	-	Lx8	LINE	L1	chr5	14563337	14563339	+	ENSMUST00000199783.1,ENSMUSG00000106491.1	Gm42446	ENSMUSG00000106491.1	ENSMUST00000199783.1	TEC	chr5:14563338-14566621
chr5	14596819	14597140	+	MTD	LTR	ERVL-MaLR	chr5	14596863	14596865	+	ENSMUST00000200102.1,ENSMUSG00000105485.1	Gm42447	ENSMUSG00000105485.1	ENSMUST00000200102.1	TEC	chr5:14596864-14599766
chr5	14603547	14604171	+	Lx2A1	LINE	L1	chr5	14604048	14604050	+	ENSMUST00000199366.1,ENSMUSG00000106048.1	Gm42444	ENSMUSG00000106048.1	ENSMUST00000199366.1	TEC	chr5:14604049-14608606
chr5	14611208	14611805	+	L1MB8	LINE	L1	chr5	14611651	14611653	+	ENSMUST00000196996.1,ENSMUSG00000106411.1	Gm42445	ENSMUSG00000106411.1	ENSMUST00000196996.1	TEC	chr5:14611652-14614544
chr5	14665282	14665677	-	MTA_Mm	LTR	ERVL-MaLR	chr5	14665648	14665650	+	ENSMUST00000198643.1,ENSMUSG00000105578.1	Gm43663	ENSMUSG00000105578.1	ENSMUST00000198643.1	TEC	chr5:14665649-14667153
chr5	15464169	15464624	+	L1_Mus4	LINE	L1	chr5	15464170	15464172	+	ENSMUST00000196145.4,ENSMUSG00000106004.4	Gm43391	ENSMUSG00000106004.4	ENSMUST00000196145.4	antisense	chr5:15464171-15476857
chr5	15470337	15470795	+	L1_Mus4	LINE	L1	chr5	15470338	15470340	+	ENSMUST00000197796.1,ENSMUSG00000106004.4	Gm43391	ENSMUSG00000106004.4	ENSMUST00000197796.1	antisense	chr5:15470339-15478876
chr5	15523082	15523549	+	L1_Mus4	LINE	L1	chr5	15523083	15523085	+	ENSMUST00000198681.1,ENSMUSG00000094230.5	Gm21847	ENSMUSG00000094230.5	ENSMUST00000198681.1	antisense	chr5:15523084-15529612
chr5	15805442	15805600	-	MIR	SINE	MIR	chr5	15805563	15805565	+	ENSMUST00000196805.1,ENSMUSG00000105515.1	Gm42454	ENSMUSG00000105515.1	ENSMUST00000196805.1	TEC	chr5:15805564-15806744
chr5	15882879	15884166	+	RMER1A	Other	Other	chr5	15883765	15883767	-	ENSMUST00000198907.4,ENSMUSG00000105185.4	4930519H02Rik	ENSMUSG00000105185.4	ENSMUST00000198907.4	lincRNA	chr5:15863928-15883766
chr5	15882879	15884166	+	RMER1A	Other	Other	chr5	15883828	15883830	-	ENSMUST00000198603.1,ENSMUSG00000105185.4	4930519H02Rik	ENSMUSG00000105185.4	ENSMUST00000198603.1	lincRNA	chr5:15867204-15883829
chr5	15934625	15934691	+	C-rich	Low_complexity	Low_complexity	chr5	15934690	15934692	+	ENSMUST00000167946.8,ENSMUSG00000040118.15	Cacna2d1	ENSMUSG00000040118.15	ENSMUST00000167946.8	protein_coding	chr5:15934691-16374511
chr5	16325928	16326022	+	(GGGA)n	Simple_repeat	Simple_repeat	chr5	16325984	16325986	+	ENSMUST00000200158.1,ENSMUSG00000040118.15	Cacna2d1	ENSMUSG00000040118.15	ENSMUST00000200158.1	protein_coding	chr5:16325985-16329883
chr5	16572947	16573086	+	URR1A	DNA	hAT-Charlie	chr5	16572950	16572952	+	ENSMUST00000196810.1,ENSMUSG00000106339.1	Gm43489	ENSMUSG00000106339.1	ENSMUST00000196810.1	TEC	chr5:16572951-16573943
chr5	18490179	18490203	+	AT_rich	Low_complexity	Low_complexity	chr5	18490193	18490195	-	ENSMUST00000199456.1,ENSMUSG00000104718.1	Gm31752	ENSMUSG00000104718.1	ENSMUST00000199456.1	lincRNA	chr5:18481705-18490194
chr5	19515412	19515509	-	U6	snRNA	snRNA	chr5	19515506	19515508	-	ENSMUST00000158043.1,ENSMUSG00000088668.1	Gm25335	ENSMUSG00000088668.1	ENSMUST00000158043.1	snRNA	chr5:19515405-19515507
chr5	19907655	19907751	+	(GA)n	Simple_repeat	Simple_repeat	chr5	19907744	19907746	+	ENSMUST00000115267.6,ENSMUSG00000040003.18	Magi2	ENSMUSG00000040003.18	ENSMUST00000115267.6	protein_coding	chr5:19907745-20702925
chr5	20092614	20092718	+	U6	snRNA	snRNA	chr5	20092614	20092616	+	ENSMUST00000083029.2,ENSMUSG00000096882.1	Gm23570	ENSMUSG00000096882.1	ENSMUST00000083029.2	snRNA	chr5:20092615-20092718
chr5	20202081	20203382	+	MERVL_2A-int	LTR	ERVL	chr5	20202568	20202570	+	ENSMUST00000197822.4,ENSMUSG00000040003.18	Magi2	ENSMUSG00000040003.18	ENSMUST00000197822.4	protein_coding	chr5:20202569-20465613
chr5	20805632	20805727	+	L3	LINE	CR1	chr5	20805706	20805708	-	ENSMUST00000124431.7,ENSMUSG00000039987.15	Phtf2	ENSMUSG00000039987.15	ENSMUST00000124431.7	protein_coding	chr5:20782388-20805707
chr5	20945461	20945640	+	MLT1B	LTR	ERVL-MaLR	chr5	20945503	20945505	-	ENSMUST00000197089.1,ENSMUSG00000039968.9	Rsbn1l	ENSMUSG00000039968.9	ENSMUST00000197089.1	protein_coding	chr5:20920142-20945504
chr5	21009606	21009796	+	B2_Mm2	SINE	B2	chr5	21009605	21009607	-	ENSMUST00000126853.7,ENSMUSG00000028771.13	Ptpn12	ENSMUSG00000028771.13	ENSMUST00000126853.7	protein_coding	chr5:20998453-21009606
chr5	21055740	21055841	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	21055752	21055754	-	ENSMUST00000151813.7,ENSMUSG00000028771.13	Ptpn12	ENSMUSG00000028771.13	ENSMUST00000151813.7	protein_coding	chr5:21001288-21055753
chr5	21434639	21434775	-	RSINE1	SINE	B4	chr5	21434728	21434730	+	ENSMUST00000146056.1,ENSMUSG00000047221.5	Fam185a	ENSMUSG00000047221.5	ENSMUST00000146056.1	protein_coding	chr5:21434729-21480804
chr5	21603561	21603907	-	ORR1A1	LTR	ERVL-MaLR	chr5	21603657	21603659	-	ENSMUST00000153598.1,ENSMUSG00000048520.16	Fbxl13	ENSMUSG00000048520.16	ENSMUST00000153598.1	protein_coding	chr5:21581181-21603658
chr5	21737924	21738104	-	ORR1C1	LTR	ERVL-MaLR	chr5	21738035	21738037	+	ENSMUST00000149648.1,ENSMUSG00000029017.13	Pmpcb	ENSMUSG00000029017.13	ENSMUST00000149648.1	protein_coding	chr5:21738036-21742765
chr5	21748512	21748625	+	B1F1	SINE	Alu	chr5	21748512	21748514	-	ENSMUST00000118032.1,ENSMUSG00000083006.1	Gm15715	ENSMUSG00000083006.1	ENSMUST00000118032.1	processed_pseudogene	chr5:21748231-21748513
chr5	21794101	21794277	-	B2_Mm1t	SINE	B2	chr5	21794102	21794104	+	ENSMUST00000132720.1,ENSMUSG00000028932.7	Psmc2	ENSMUSG00000028932.7	ENSMUST00000132720.1	protein_coding	chr5:21794103-21798185
chr5	22404557	22405197	-	Lx5c	LINE	L1	chr5	22404717	22404719	-	ENSMUST00000200336.1,ENSMUSG00000105106.1	Gm43657	ENSMUSG00000105106.1	ENSMUST00000200336.1	lincRNA	chr5:22400886-22404718
chr5	22430439	22430949	+	Lx2	LINE	L1	chr5	22430442	22430444	-	ENSMUST00000083726.1,ENSMUSG00000065660.1	n-R5s170	ENSMUSG00000065660.1	ENSMUST00000083726.1	rRNA	chr5:22430331-22430443
chr5	22522648	22522678	+	(A)n	Simple_repeat	Simple_repeat	chr5	22522665	22522667	-	ENSMUST00000199943.1,ENSMUSG00000029012.11	Orc5	ENSMUSG00000029012.11	ENSMUST00000199943.1	protein_coding	chr5:22518925-22522666
chr5	22534736	22534843	-	U6	snRNA	snRNA	chr5	22534842	22534844	-	ENSMUST00000178586.1,ENSMUSG00000096346.1	Gm22887	ENSMUSG00000096346.1	ENSMUST00000178586.1	snRNA	chr5:22534737-22534843
chr5	22553870	22553915	+	(TGGGGG)n	Simple_repeat	Simple_repeat	chr5	22553914	22553916	+	ENSMUST00000199660.1,ENSMUSG00000097207.7	6030443J06Rik	ENSMUSG00000097207.7	ENSMUST00000199660.1	lincRNA	chr5:22553915-22557363
chr5	22644896	22645625	-	RLTR25B	LTR	ERVK	chr5	22645182	22645184	-	ENSMUST00000174963.1,ENSMUSG00000092704.1	Gm24512	ENSMUSG00000092704.1	ENSMUST00000174963.1	snRNA	chr5:22645119-22645183
chr5	22738961	22739060	-	Lx9	LINE	L1	chr5	22739018	22739020	+	ENSMUST00000196064.1,ENSMUSG00000105029.1	Gm44363	ENSMUSG00000105029.1	ENSMUST00000196064.1	miRNA	chr5:22739019-22739111
chr5	22868471	22868883	+	Lx5c	LINE	L1	chr5	22868544	22868546	-	ENSMUST00000199544.1,ENSMUSG00000105543.1	Gm43169	ENSMUSG00000105543.1	ENSMUST00000199544.1	TEC	chr5:22863812-22868545
chr5	23279800	23280110	+	B4	SINE	B4	chr5	23279910	23279912	-	ENSMUST00000184168.1,ENSMUSG00000098903.1	Gm28022	ENSMUSG00000098903.1	ENSMUST00000184168.1	miRNA	chr5:23279866-23279911
chr5	23347073	23347474	-	BGLII_Mus	LTR	ERVK	chr5	23347273	23347275	-	ENSMUST00000199688.1,ENSMUSG00000105254.1	Gm42951	ENSMUSG00000105254.1	ENSMUST00000199688.1	lincRNA	chr5:23330370-23347274
chr5	23388240	23388289	+	C-rich	Low_complexity	Low_complexity	chr5	23388243	23388245	-	ENSMUST00000197645.1,ENSMUSG00000104765.1	Gm43058	ENSMUSG00000104765.1	ENSMUST00000197645.1	processed_pseudogene	chr5:23387620-23388244
chr5	23434404	23434455	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	23434440	23434442	+	ENSMUST00000196889.4,ENSMUSG00000029004.15	Kmt2e	ENSMUSG00000029004.15	ENSMUST00000196889.4	protein_coding	chr5:23434441-23486400
chr5	23434404	23434455	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	23434440	23434442	+	ENSMUST00000094962.8,ENSMUSG00000029004.15	Kmt2e	ENSMUSG00000029004.15	ENSMUST00000094962.8	protein_coding	chr5:23434441-23504235
chr5	23434404	23434455	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	23434448	23434450	+	ENSMUST00000115128.7,ENSMUSG00000029004.15	Kmt2e	ENSMUSG00000029004.15	ENSMUST00000115128.7	protein_coding	chr5:23434449-23504235
chr5	23487518	23487723	-	7SK	RNA	RNA	chr5	23487722	23487724	-	ENSMUST00000157545.1,ENSMUSG00000088170.1	Gm25219	ENSMUSG00000088170.1	ENSMUST00000157545.1	misc_RNA	chr5:23487394-23487723
chr5	23492938	23493085	-	B1_Mur4	SINE	Alu	chr5	23492957	23492959	+	ENSMUST00000197591.1,ENSMUSG00000029004.15	Kmt2e	ENSMUSG00000029004.15	ENSMUST00000197591.1	protein_coding	chr5:23492958-23496358
chr5	23542108	23542178	-	B4A	SINE	B4	chr5	23542117	23542119	-	ENSMUST00000200173.1,ENSMUSG00000062604.11	Srpk2	ENSMUSG00000062604.11	ENSMUST00000200173.1	protein_coding	chr5:23525731-23542118
chr5	23674293	23674389	-	5S	rRNA	rRNA	chr5	23674380	23674382	-	ENSMUST00000157734.1,ENSMUSG00000088359.1	Gm24009	ENSMUSG00000088359.1	ENSMUST00000157734.1	rRNA	chr5:23674289-23674381
chr5	23675543	23675587	+	GC_rich	Low_complexity	Low_complexity	chr5	23675545	23675547	-	ENSMUST00000196851.1,ENSMUSG00000105565.1	Gm43566	ENSMUSG00000105565.1	ENSMUST00000196851.1	sense_intronic	chr5:23674739-23675546
chr5	23684343	23684725	-	MLT1F1	LTR	ERVL-MaLR	chr5	23684616	23684618	-	ENSMUST00000197985.4,ENSMUSG00000062604.11	Srpk2	ENSMUSG00000062604.11	ENSMUST00000197985.4	protein_coding	chr5:23546979-23684617
chr5	23684343	23684725	-	MLT1F1	LTR	ERVL-MaLR	chr5	23684599	23684601	-	ENSMUST00000198549.1,ENSMUSG00000062604.11	Srpk2	ENSMUSG00000062604.11	ENSMUST00000198549.1	protein_coding	chr5:23565238-23684600
chr5	23750023	23750114	+	B3A	SINE	B2	chr5	23750111	23750113	-	ENSMUST00000129848.7,ENSMUSG00000057541.14	Pus7	ENSMUSG00000057541.14	ENSMUST00000129848.7	protein_coding	chr5:23742365-23750112
chr5	23779382	23779595	+	B3	SINE	B2	chr5	23779557	23779559	-	ENSMUST00000131992.7,ENSMUSG00000057541.14	Pus7	ENSMUSG00000057541.14	ENSMUST00000131992.7	protein_coding	chr5:23740656-23779558
chr5	23783682	23783725	+	GC_rich	Low_complexity	Low_complexity	chr5	23783710	23783712	-	ENSMUST00000119946.7,ENSMUSG00000057541.14	Pus7	ENSMUSG00000057541.14	ENSMUST00000119946.7	protein_coding	chr5:23740648-23783711
chr5	23790627	23790833	+	B2_Mm2	SINE	B2	chr5	23790701	23790703	+	ENSMUST00000199495.1,ENSMUSG00000104569.1	Gm43054	ENSMUSG00000104569.1	ENSMUST00000199495.1	TEC	chr5:23790702-23791585
chr5	23836197	23836321	-	U1	snRNA	snRNA	chr5	23836320	23836322	-	ENSMUST00000083395.1,ENSMUSG00000065329.1	Gm22054	ENSMUSG00000065329.1	ENSMUST00000083395.1	snRNA	chr5:23836167-23836321
chr5	23984950	23985076	-	B3A	SINE	B2	chr5	23985028	23985030	-	ENSMUST00000198867.1,ENSMUSG00000028995.14	Fam126a	ENSMUSG00000028995.14	ENSMUST00000198867.1	protein_coding	chr5:23981903-23985029
chr5	24393655	24393770	+	B1F	SINE	Alu	chr5	24393662	24393664	+	ENSMUST00000138168.2,ENSMUSG00000028973.18	Abcb8	ENSMUSG00000028973.18	ENSMUST00000138168.2	protein_coding	chr5:24393663-24400222
chr5	24393655	24393770	+	B1F	SINE	Alu	chr5	24393675	24393677	+	ENSMUST00000115077.7,ENSMUSG00000028973.18	Abcb8	ENSMUSG00000028973.18	ENSMUST00000115077.7	protein_coding	chr5:24393676-24410054
chr5	24425222	24425263	+	GC_rich	Low_complexity	Low_complexity	chr5	24425231	24425233	+	ENSMUST00000080067.12,ENSMUSG00000028962.14	Slc4a2	ENSMUSG00000028962.14	ENSMUST00000080067.12	protein_coding	chr5:24425232-24440950
chr5	24438485	24438586	-	U6	snRNA	snRNA	chr5	24438585	24438587	-	ENSMUST00000158071.1,ENSMUSG00000088696.1	Gm22333	ENSMUSG00000088696.1	ENSMUST00000158071.1	snRNA	chr5:24438486-24438586
chr5	24452313	24452350	+	GC_rich	Low_complexity	Low_complexity	chr5	24452333	24452335	+	ENSMUST00000199647.1,ENSMUSG00000023353.14	Agap3	ENSMUSG00000023353.14	ENSMUST00000199647.1	protein_coding	chr5:24452334-24482328
chr5	24480062	24480245	-	MIR3	SINE	MIR	chr5	24480171	24480173	+	ENSMUST00000199250.1,ENSMUSG00000023353.14	Agap3	ENSMUSG00000023353.14	ENSMUST00000199250.1	protein_coding	chr5:24480172-24483182
chr5	24601878	24601914	+	CT-rich	Low_complexity	Low_complexity	chr5	24601899	24601901	-	ENSMUST00000140744.1,ENSMUSG00000028949.13	Smarcd3	ENSMUSG00000028949.13	ENSMUST00000140744.1	protein_coding	chr5:24595867-24601900
chr5	24645398	24645678	+	ORR1F	LTR	ERVL-MaLR	chr5	24645452	24645454	+	ENSMUST00000182910.1,ENSMUSG00000038165.8	1700022A21Rik	ENSMUSG00000038165.8	ENSMUST00000182910.1	transcribed_processed_pseudogene	chr5:24645453-24648860
chr5	24908474	24908512	+	GC_rich	Low_complexity	Low_complexity	chr5	24908508	24908510	-	ENSMUST00000150135.7,ENSMUSG00000028944.14	Prkag2	ENSMUSG00000028944.14	ENSMUST00000150135.7	protein_coding	chr5:24869255-24908509
chr5	25168413	25168506	+	(CA)n	Simple_repeat	Simple_repeat	chr5	25168463	25168465	-	ENSMUST00000104642.1,ENSMUSG00000077832.1	Gm26051	ENSMUSG00000077832.1	ENSMUST00000104642.1	miRNA	chr5:25168372-25168464
chr5	25188446	25188643	-	7SK	RNA	RNA	chr5	25188642	25188644	-	ENSMUST00000158217.1,ENSMUSG00000088842.1	Gm26356	ENSMUSG00000088842.1	ENSMUST00000158217.1	misc_RNA	chr5:25188361-25188643
chr5	25498691	25498711	+	(CAG)n	Simple_repeat	Simple_repeat	chr5	25498701	25498703	-	ENSMUST00000173073.7,ENSMUSG00000038056.15	Kmt2c	ENSMUSG00000038056.15	ENSMUST00000173073.7	protein_coding	chr5:25315737-25498702
chr5	25498763	25498814	+	GC_rich	Low_complexity	Low_complexity	chr5	25498782	25498784	-	ENSMUST00000172626.1,ENSMUSG00000038056.15	Kmt2c	ENSMUSG00000038056.15	ENSMUST00000172626.1	protein_coding	chr5:25382632-25498783
chr5	25510864	25511035	+	U1	snRNA	snRNA	chr5	25510864	25510866	+	ENSMUST00000104199.1,ENSMUSG00000077387.1	Gm22656	ENSMUSG00000077387.1	ENSMUST00000104199.1	snRNA	chr5:25510865-25511035
chr5	25660153	25660371	-	Charlie17	DNA	hAT-Charlie	chr5	25660154	25660156	-	ENSMUST00000196473.1,ENSMUSG00000059244.6	Gm10062	ENSMUSG00000059244.6	ENSMUST00000196473.1	lincRNA	chr5:25659806-25660155
chr5	25661271	25661417	-	B1_Mm	SINE	Alu	chr5	25661281	25661283	-	ENSMUST00000072180.4,ENSMUSG00000059244.6	Gm10062	ENSMUSG00000059244.6	ENSMUST00000072180.4	lincRNA	chr5:25659813-25661282
chr5	27533688	27533873	+	MTA_Mm	LTR	ERVL-MaLR	chr5	27533776	27533778	+	ENSMUST00000134175.1,ENSMUSG00000061576.15	Dpp6	ENSMUSG00000061576.15	ENSMUST00000134175.1	protein_coding	chr5:27533777-27697025
chr5	27817208	27817530	-	RMER17C	LTR	ERVK	chr5	27817489	27817491	+	ENSMUST00000196573.1,ENSMUSG00000105223.1	Gm43433	ENSMUSG00000105223.1	ENSMUST00000196573.1	processed_pseudogene	chr5:27817490-27817970
chr5	27820293	27820980	+	RMER6-int	LTR	ERVK	chr5	27820969	27820971	+	ENSMUST00000196610.1,ENSMUSG00000105375.1	Gm20239	ENSMUSG00000105375.1	ENSMUST00000196610.1	processed_pseudogene	chr5:27820970-27821951
chr5	28036391	28036549	+	(GAGAA)n	Simple_repeat	Simple_repeat	chr5	28036405	28036407	-	ENSMUST00000196656.1,ENSMUSG00000106030.1	Gm43611	ENSMUSG00000106030.1	ENSMUST00000196656.1	TEC	chr5:28032055-28036406
chr5	29223686	29223945	-	MER34A	LTR	ERV1	chr5	29223785	29223787	+	ENSMUST00000163050.4,ENSMUSG00000029130.12	Rnf32	ENSMUSG00000029130.12	ENSMUST00000163050.4	protein_coding	chr5:29223786-29228457
chr5	29279979	29280701	-	Lx8b	LINE	L1	chr5	29280296	29280298	-	ENSMUST00000199610.1,ENSMUSG00000105741.1	C79130	ENSMUSG00000105741.1	ENSMUST00000199610.1	TEC	chr5:29276002-29280297
chr5	29336700	29336898	-	MTA_Mm	LTR	ERVL-MaLR	chr5	29336845	29336847	-	ENSMUST00000175561.1,ENSMUSG00000093302.1	Gm23801	ENSMUSG00000093302.1	ENSMUST00000175561.1	miRNA	chr5:29336780-29336846
chr5	29481524	29481631	-	U6	snRNA	snRNA	chr5	29481630	29481632	-	ENSMUST00000082612.1,ENSMUSG00000093875.1	Gm24538	ENSMUSG00000093875.1	ENSMUST00000082612.1	snRNA	chr5:29481525-29481631
chr5	29569395	29569494	+	GC_rich	Low_complexity	Low_complexity	chr5	29569445	29569447	+	ENSMUST00000199032.1,ENSMUSG00000039000.8	Ube3c	ENSMUSG00000039000.8	ENSMUST00000199032.1	protein_coding	chr5:29569446-29632484
chr5	29569395	29569494	+	GC_rich	Low_complexity	Low_complexity	chr5	29569485	29569487	+	ENSMUST00000197193.1,ENSMUSG00000039000.8	Ube3c	ENSMUSG00000039000.8	ENSMUST00000197193.1	protein_coding	chr5:29569486-29600187
chr5	29630263	29630963	-	L1Md_F3	LINE	L1	chr5	29630912	29630914	+	ENSMUST00000199598.1,ENSMUSG00000039000.8	Ube3c	ENSMUSG00000039000.8	ENSMUST00000199598.1	protein_coding	chr5:29630913-29632484
chr5	29736023	29736067	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	29736023	29736025	+	ENSMUST00000127753.1,ENSMUSG00000029131.14	Dnajb6	ENSMUSG00000029131.14	ENSMUST00000127753.1	protein_coding	chr5:29736024-29739089
chr5	29736023	29736067	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	29736032	29736034	+	ENSMUST00000196528.4,ENSMUSG00000029131.14	Dnajb6	ENSMUSG00000029131.14	ENSMUST00000196528.4	protein_coding	chr5:29736033-29818134
chr5	29750613	29750760	-	B1_Mus2	SINE	Alu	chr5	29750721	29750723	+	ENSMUST00000151976.1,ENSMUSG00000029131.14	Dnajb6	ENSMUSG00000029131.14	ENSMUST00000151976.1	protein_coding	chr5:29750722-29752738
chr5	29891821	29892220	+	L2	LINE	L2	chr5	29891963	29891965	-	ENSMUST00000199286.1,ENSMUSG00000105437.1	Gm42450	ENSMUSG00000105437.1	ENSMUST00000199286.1	lincRNA	chr5:29886728-29891964
chr5	29950587	29950868	+	L1MA9	LINE	L1	chr5	29950717	29950719	-	ENSMUST00000199654.1,ENSMUSG00000105926.1	Gm43386	ENSMUSG00000105926.1	ENSMUST00000199654.1	TEC	chr5:29946718-29950718
chr5	30149523	30149660	-	ID_B1	SINE	B4	chr5	30149542	30149544	-	ENSMUST00000199559.1,ENSMUSG00000025745.12	Hadha	ENSMUSG00000025745.12	ENSMUST00000199559.1	protein_coding	chr5:30147084-30149543
chr5	30354113	30354222	+	B1_Mur3	SINE	Alu	chr5	30354138	30354140	+	ENSMUST00000198023.1,ENSMUSG00000073102.7	Drc1	ENSMUSG00000073102.7	ENSMUST00000198023.1	protein_coding	chr5:30354139-30356320
chr5	30514681	30514778	-	B4	SINE	B4	chr5	30514683	30514685	-	ENSMUST00000157702.1,ENSMUSG00000088327.1	Gm25666	ENSMUSG00000088327.1	ENSMUST00000157702.1	snRNA	chr5:30514578-30514684
chr5	30588125	30588170	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	30588169	30588171	+	ENSMUST00000066295.3,ENSMUSG00000049265.7	Kcnk3	ENSMUSG00000049265.7	ENSMUST00000066295.3	protein_coding	chr5:30588170-30625271
chr5	30588610	30588638	+	GC_rich	Low_complexity	Low_complexity	chr5	30588618	30588620	-	ENSMUST00000199326.1,ENSMUSG00000053214.7	Gm9899	ENSMUSG00000053214.7	ENSMUST00000199326.1	processed_transcript	chr5:30573987-30588619
chr5	30759024	30760020	-	RLTR10-int	LTR	ERVK	chr5	30759031	30759033	+	ENSMUST00000197835.1,ENSMUSG00000106173.1	Gm42764	ENSMUSG00000106173.1	ENSMUST00000197835.1	sense_intronic	chr5:30759032-30760477
chr5	30791756	30792007	-	MLT1B	LTR	ERVL-MaLR	chr5	30791998	30792000	+	ENSMUST00000136657.1,ENSMUSG00000029168.14	Dpysl5	ENSMUSG00000029168.14	ENSMUST00000136657.1	protein_coding	chr5:30791999-30796414
chr5	30913368	30913407	+	G-rich	Low_complexity	Low_complexity	chr5	30913401	30913403	+	ENSMUST00000031055.7,ENSMUSG00000029163.9	Emilin1	ENSMUSG00000029163.9	ENSMUST00000031055.7	protein_coding	chr5:30913402-30921277
chr5	30959516	30959567	+	T-rich	Low_complexity	Low_complexity	chr5	30959554	30959556	-	ENSMUST00000201730.1,ENSMUSG00000045302.13	Preb	ENSMUSG00000045302.13	ENSMUST00000201730.1	protein_coding	chr5:30958881-30959555
chr5	31048061	31048169	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	31048078	31048080	-	ENSMUST00000200816.1,ENSMUSG00000006641.12	Slc5a6	ENSMUSG00000006641.12	ENSMUST00000200816.1	protein_coding	chr5:31043095-31048079
chr5	31053830	31053895	+	A-rich	Low_complexity	Low_complexity	chr5	31053869	31053871	+	ENSMUST00000200800.1,ENSMUSG00000013622.15	Atraid	ENSMUSG00000013622.15	ENSMUST00000200800.1	protein_coding	chr5:31053870-31054623
chr5	31166088	31166234	-	B1_Mur4	SINE	Alu	chr5	31166131	31166133	-	ENSMUST00000201087.1,ENSMUSG00000106864.3	Gtf3c2	ENSMUSG00000106864.3	ENSMUST00000201087.1	protein_coding	chr5:31159495-31166132
chr5	31205030	31205096	+	CT-rich	Low_complexity	Low_complexity	chr5	31205082	31205084	-	ENSMUST00000202402.1,ENSMUSG00000029147.11	Ppm1g	ENSMUSG00000029147.11	ENSMUST00000202402.1	protein_coding	chr5:31203102-31205083
chr5	31214276	31214464	+	B4	SINE	B4	chr5	31214314	31214316	-	ENSMUST00000200853.1,ENSMUSG00000106717.1	Gm42798	ENSMUSG00000106717.1	ENSMUST00000200853.1	TEC	chr5:31210344-31214315
chr5	31356760	31356813	+	T-rich	Low_complexity	Low_complexity	chr5	31356794	31356796	-	ENSMUST00000200995.1,ENSMUSG00000106935.1	Gm19457	ENSMUSG00000106935.1	ENSMUST00000200995.1	processed_pseudogene	chr5:31356348-31356795
chr5	31461011	31461033	+	(A)n	Simple_repeat	Simple_repeat	chr5	31461021	31461023	+	ENSMUST00000202437.1,ENSMUSG00000107120.1	Gm43059	ENSMUSG00000107120.1	ENSMUST00000202437.1	TEC	chr5:31461022-31462409
chr5	31527727	31527873	-	B1_Mus2	SINE	Alu	chr5	31527806	31527808	-	ENSMUST00000202932.1,ENSMUSG00000053134.13	Supt7l	ENSMUSG00000053134.13	ENSMUST00000202932.1	protein_coding	chr5:31521549-31527807
chr5	31543735	31543786	+	(GGA)n	Simple_repeat	Simple_repeat	chr5	31543782	31543784	+	ENSMUST00000202273.3,ENSMUSG00000029141.16	Slc4a1ap	ENSMUSG00000029141.16	ENSMUST00000202273.3	protein_coding	chr5:31543783-31554042
chr5	31580880	31581098	+	L1ME3G	LINE	L1	chr5	31581078	31581080	+	ENSMUST00000202297.1,ENSMUSG00000107015.1	2900076G11Rik	ENSMUSG00000107015.1	ENSMUST00000202297.1	TEC	chr5:31581079-31581709
chr5	31598663	31598759	+	MER5A	DNA	hAT-Charlie	chr5	31598732	31598734	+	ENSMUST00000202953.1,ENSMUSG00000106918.3	Mrpl33	ENSMUSG00000106918.3	ENSMUST00000202953.1	protein_coding	chr5:31598733-31622644
chr5	31686023	31686286	+	Lx5	LINE	L1	chr5	31686092	31686094	-	ENSMUST00000202036.1,ENSMUSG00000029136.9	Rbks	ENSMUSG00000029136.9	ENSMUST00000202036.1	protein_coding	chr5:31660045-31686093
chr5	31870045	31870270	+	7SK	RNA	RNA	chr5	31870045	31870047	+	ENSMUST00000157889.1,ENSMUSG00000088514.1	Gm24436	ENSMUSG00000088514.1	ENSMUST00000157889.1	misc_RNA	chr5:31870046-31870347
chr5	32175098	32175205	+	U6	snRNA	snRNA	chr5	32175098	32175100	+	ENSMUST00000178449.1,ENSMUSG00000096091.1	Gm26335	ENSMUSG00000096091.1	ENSMUST00000178449.1	snRNA	chr5:32175099-32175205
chr5	32239006	32239230	-	L2	LINE	L2	chr5	32239083	32239085	+	ENSMUST00000202201.3,ENSMUSG00000029134.14	Plb1	ENSMUSG00000029134.14	ENSMUST00000202201.3	protein_coding	chr5:32239084-32322244
chr5	32629637	32630018	+	MTA_Mm	LTR	ERVL-MaLR	chr5	32629841	32629843	+	ENSMUST00000200773.1,ENSMUSG00000107018.1	Gm43694	ENSMUSG00000107018.1	ENSMUST00000200773.1	TEC	chr5:32629842-32630960
chr5	32650860	32651185	-	ORR1A1	LTR	ERVL-MaLR	chr5	32651064	32651066	-	ENSMUST00000155976.1,ENSMUSG00000085234.1	Gm15614	ENSMUSG00000085234.1	ENSMUST00000155976.1	antisense	chr5:32507184-32651065
chr5	32800815	32801191	+	RMER20A	LTR	ERVK	chr5	32800964	32800966	-	ENSMUST00000198236.1,ENSMUSG00000105429.1	Gm43692	ENSMUSG00000105429.1	ENSMUST00000198236.1	TEC	chr5:32799904-32800965
chr5	32913545	32913637	+	(GA)n	Simple_repeat	Simple_repeat	chr5	32913630	32913632	+	ENSMUST00000158455.1,ENSMUSG00000089080.1	Gm24003	ENSMUSG00000089080.1	ENSMUST00000158455.1	snRNA	chr5:32913631-32913730
chr5	32984391	32984601	-	B3	SINE	B2	chr5	32984569	32984571	+	ENSMUST00000196072.1,ENSMUSG00000105929.1	Gm43693	ENSMUSG00000105929.1	ENSMUST00000196072.1	TEC	chr5:32984570-32985818
chr5	33018815	33018836	+	(CCCG)n	Simple_repeat	Simple_repeat	chr5	33018815	33018817	+	ENSMUST00000019109.7,ENSMUSG00000018965.11	Ywhah	ENSMUSG00000018965.11	ENSMUST00000019109.7	protein_coding	chr5:33018816-33027966
chr5	33218444	33218477	+	(TG)n	Simple_repeat	Simple_repeat	chr5	33218454	33218456	-	ENSMUST00000046186.7,ENSMUSG00000037379.7	Spon2	ENSMUSG00000037379.7	ENSMUST00000046186.7	protein_coding	chr5:33213927-33218455
chr5	33254892	33255356	+	ORR1D1-int	LTR	ERVL-MaLR	chr5	33255317	33255319	+	ENSMUST00000202021.1,ENSMUSG00000107161.1	Gm43850	ENSMUSG00000107161.1	ENSMUST00000202021.1	processed_pseudogene	chr5:33255318-33256362
chr5	33269414	33269526	-	X9_LINE	LINE	L1?	chr5	33269487	33269489	-	ENSMUST00000201275.3,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000201275.3	protein_coding	chr5:33250383-33269488
chr5	33269414	33269526	-	X9_LINE	LINE	L1?	chr5	33269523	33269525	-	ENSMUST00000202632.1,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000202632.1	protein_coding	chr5:33260643-33269524
chr5	33274912	33275020	+	GC_rich	Low_complexity	Low_complexity	chr5	33274993	33274995	-	ENSMUST00000079746.9,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000079746.9	protein_coding	chr5:33247723-33274994
chr5	33274912	33275020	+	GC_rich	Low_complexity	Low_complexity	chr5	33274991	33274993	-	ENSMUST00000202868.3,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000202868.3	protein_coding	chr5:33247754-33274992
chr5	33274912	33275020	+	GC_rich	Low_complexity	Low_complexity	chr5	33274991	33274993	-	ENSMUST00000201575.3,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000201575.3	protein_coding	chr5:33247754-33274992
chr5	33274912	33275020	+	GC_rich	Low_complexity	Low_complexity	chr5	33274980	33274982	-	ENSMUST00000202962.3,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000202962.3	protein_coding	chr5:33248025-33274981
chr5	33274912	33275020	+	GC_rich	Low_complexity	Low_complexity	chr5	33274978	33274980	-	ENSMUST00000201372.2,ENSMUSG00000037373.12	Ctbp1	ENSMUSG00000037373.12	ENSMUST00000201372.2	protein_coding	chr5:33250858-33274979
chr5	33311139	33311496	+	ORR1B2	LTR	ERVL-MaLR	chr5	33311149	33311151	-	ENSMUST00000174768.1,ENSMUSG00000092275.1	Gm20465	ENSMUSG00000092275.1	ENSMUST00000174768.1	lincRNA	chr5:33293614-33311150
chr5	33642162	33642308	+	B1_Mus2	SINE	Alu	chr5	33642161	33642163	-	ENSMUST00000146889.1,ENSMUSG00000004642.13	Slbp	ENSMUSG00000004642.13	ENSMUST00000146889.1	protein_coding	chr5:33640386-33642162
chr5	33682482	33683452	+	RMER19A	LTR	ERVK	chr5	33682973	33682975	-	ENSMUST00000201254.1,ENSMUSG00000106971.1	Gm42965	ENSMUSG00000106971.1	ENSMUST00000201254.1	processed_pseudogene	chr5:33682725-33682974
chr5	33753327	33753651	+	RMER4B	LTR	ERVK	chr5	33753561	33753563	-	ENSMUST00000149886.1,ENSMUSG00000005299.6	Letm1	ENSMUSG00000005299.6	ENSMUST00000149886.1	protein_coding	chr5:33742534-33753562
chr5	33820695	33820726	+	GC_rich	Low_complexity	Low_complexity	chr5	33820724	33820726	+	ENSMUST00000075812.10,ENSMUSG00000057406.16	Nsd2	ENSMUSG00000057406.16	ENSMUST00000075812.10	protein_coding	chr5:33820725-33897966
chr5	33820752	33820836	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	33820828	33820830	+	ENSMUST00000155880.7,ENSMUSG00000057406.16	Nsd2	ENSMUSG00000057406.16	ENSMUST00000155880.7	protein_coding	chr5:33820829-33846182
chr5	33946969	33947287	-	RLTR46	LTR	ERVK	chr5	33947025	33947027	+	ENSMUST00000202834.1,ENSMUSG00000107043.1	Gm42849	ENSMUSG00000107043.1	ENSMUST00000202834.1	lincRNA	chr5:33947026-33948832
chr5	33947756	33951038	-	MMERVK10C-int	LTR	ERVK	chr5	33948989	33948991	-	ENSMUST00000201325.1,ENSMUSG00000106688.1	Gm42851	ENSMUSG00000106688.1	ENSMUST00000201325.1	lincRNA	chr5:33947580-33948990
chr5	33993015	33993411	-	MTA_Mm	LTR	ERVL-MaLR	chr5	33993061	33993063	-	ENSMUST00000201732.1,ENSMUSG00000106743.1	Gm42847	ENSMUSG00000106743.1	ENSMUST00000201732.1	TEC	chr5:33990510-33993062
chr5	34105464	34106340	-	RMER19B	LTR	ERVK	chr5	34105802	34105804	-	ENSMUST00000202741.4,ENSMUSG00000045102.12	Poln	ENSMUSG00000045102.12	ENSMUST00000202741.4	protein_coding	chr5:34014346-34105803
chr5	34105464	34106340	-	RMER19B	LTR	ERVK	chr5	34105742	34105744	-	ENSMUST00000202027.1,ENSMUSG00000045102.12	Poln	ENSMUSG00000045102.12	ENSMUST00000202027.1	protein_coding	chr5:34032746-34105743
chr5	34105464	34106340	-	RMER19B	LTR	ERVK	chr5	34105818	34105820	-	ENSMUST00000202076.1,ENSMUSG00000045102.12	Poln	ENSMUSG00000045102.12	ENSMUST00000202076.1	protein_coding	chr5:34101699-34105819
chr5	34162323	34162426	+	U6	snRNA	snRNA	chr5	34162323	34162325	+	ENSMUST00000104266.1,ENSMUSG00000077454.1	Gm25918	ENSMUSG00000077454.1	ENSMUST00000104266.1	snRNA	chr5:34162324-34162426
chr5	34220959	34221353	+	MTA_Mm	LTR	ERVL-MaLR	chr5	34221161	34221163	+	ENSMUST00000201477.1,ENSMUSG00000106888.1	Gm42848	ENSMUSG00000106888.1	ENSMUST00000201477.1	antisense	chr5:34221162-34225984
chr5	34469643	34469781	-	B1_Mus1	SINE	Alu	chr5	34469663	34469665	+	ENSMUST00000201811.1,ENSMUSG00000107227.1	Gm42559	ENSMUSG00000107227.1	ENSMUST00000201811.1	TEC	chr5:34469664-34473195
chr5	34530648	34530739	+	U1	snRNA	snRNA	chr5	34530648	34530650	+	ENSMUST00000157707.1,ENSMUSG00000088332.1	Gm22847	ENSMUSG00000088332.1	ENSMUST00000157707.1	snRNA	chr5:34530649-34530753
chr5	34573740	34573835	+	G-rich	Low_complexity	Low_complexity	chr5	34573764	34573766	+	ENSMUST00000147574.7,ENSMUSG00000029106.14	Add1	ENSMUSG00000029106.14	ENSMUST00000147574.7	protein_coding	chr5:34573765-34605893
chr5	34573740	34573835	+	G-rich	Low_complexity	Low_complexity	chr5	34573768	34573770	+	ENSMUST00000146295.7,ENSMUSG00000029106.14	Add1	ENSMUSG00000029106.14	ENSMUST00000146295.7	protein_coding	chr5:34573769-34605893
chr5	34573740	34573835	+	G-rich	Low_complexity	Low_complexity	chr5	34573803	34573805	+	ENSMUST00000145986.1,ENSMUSG00000029106.14	Add1	ENSMUSG00000029106.14	ENSMUST00000145986.1	protein_coding	chr5:34573804-34601625
chr5	34596214	34596397	+	B3	SINE	B2	chr5	34596339	34596341	+	ENSMUST00000201368.1,ENSMUSG00000029106.14	Add1	ENSMUSG00000029106.14	ENSMUST00000201368.1	protein_coding	chr5:34596340-34599113
chr5	34706636	34707031	-	MTA_Mm	LTR	ERVL-MaLR	chr5	34706830	34706832	-	ENSMUST00000201216.1,ENSMUSG00000107246.1	Gm42560	ENSMUSG00000107246.1	ENSMUST00000201216.1	antisense	chr5:34679523-34706831
chr5	34732821	34732979	-	RLTR17B_Mm	LTR	ERVK	chr5	34732971	34732973	-	ENSMUST00000116906.1,ENSMUSG00000080556.1	Mir467g	ENSMUSG00000080556.1	ENSMUST00000116906.1	miRNA	chr5:34732853-34732972
chr5	34973778	34974037	+	L1MB3	LINE	L1	chr5	34973816	34973818	+	ENSMUST00000202915.1,ENSMUSG00000029101.16	Rgs12	ENSMUSG00000029101.16	ENSMUST00000202915.1	protein_coding	chr5:34973817-34975281
chr5	35361496	35361875	+	MTE2b	LTR	ERVL-MaLR	chr5	35361540	35361542	+	ENSMUST00000201379.3,ENSMUSG00000106762.3	4930478P22Rik	ENSMUSG00000106762.3	ENSMUST00000201379.3	lincRNA	chr5:35361541-35367441
chr5	35361496	35361875	+	MTE2b	LTR	ERVL-MaLR	chr5	35361552	35361554	+	ENSMUST00000202026.3,ENSMUSG00000106762.3	4930478P22Rik	ENSMUSG00000106762.3	ENSMUST00000202026.3	lincRNA	chr5:35361553-35367677
chr5	35361496	35361875	+	MTE2b	LTR	ERVL-MaLR	chr5	35361558	35361560	+	ENSMUST00000201921.1,ENSMUSG00000106762.3	4930478P22Rik	ENSMUSG00000106762.3	ENSMUST00000201921.1	lincRNA	chr5:35361559-35366903
chr5	35391848	35391936	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	35391911	35391913	-	ENSMUST00000193163.1,ENSMUSG00000103608.1	4930442P19Rik	ENSMUSG00000103608.1	ENSMUST00000193163.1	TEC	chr5:35390673-35391912
chr5	35719198	35719319	+	MIRb	SINE	MIR	chr5	35719237	35719239	-	ENSMUST00000151555.1,ENSMUSG00000036553.16	Sh3tc1	ENSMUSG00000036553.16	ENSMUST00000151555.1	protein_coding	chr5:35697185-35719238
chr5	35722470	35722581	+	L1M5	LINE	L1	chr5	35722554	35722556	+	ENSMUST00000135451.1,ENSMUSG00000087703.1	Gm15650	ENSMUSG00000087703.1	ENSMUST00000135451.1	antisense	chr5:35722555-35724485
chr5	35912536	35913370	+	MTD-int	LTR	ERVL-MaLR	chr5	35913081	35913083	+	ENSMUST00000141824.1,ENSMUSG00000029094.12	Afap1	ENSMUSG00000029094.12	ENSMUST00000141824.1	protein_coding	chr5:35913082-35996024
chr5	35917591	35917903	+	MTD	LTR	ERVL-MaLR	chr5	35917896	35917898	+	ENSMUST00000119066.2,ENSMUSG00000082692.2	H2af-ps	ENSMUSG00000082692.2	ENSMUST00000119066.2	processed_pseudogene	chr5:35917897-35918191
chr5	36484083	36484280	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	36484111	36484113	-	ENSMUST00000119916.1,ENSMUSG00000029196.9	Tada2b	ENSMUSG00000029196.9	ENSMUST00000119916.1	protein_coding	chr5:36475742-36484112
chr5	36574256	36574383	+	MIRb	SINE	MIR	chr5	36574324	36574326	-	ENSMUST00000146430.7,ENSMUSG00000029192.17	Tbc1d14	ENSMUSG00000029192.17	ENSMUST00000146430.7	protein_coding	chr5:36490604-36574325
chr5	36666408	36666512	-	U6	snRNA	snRNA	chr5	36666511	36666513	-	ENSMUST00000158782.1,ENSMUSG00000089407.1	Gm24878	ENSMUSG00000089407.1	ENSMUST00000158782.1	snRNA	chr5:36666409-36666512
chr5	36666512	36666864	-	L1MB7	LINE	L1	chr5	36666511	36666513	-	ENSMUST00000158782.1,ENSMUSG00000089407.1	Gm24878	ENSMUSG00000089407.1	ENSMUST00000158782.1	snRNA	chr5:36666409-36666512
chr5	36695949	36696000	+	GC_rich	Low_complexity	Low_complexity	chr5	36695960	36695962	-	ENSMUST00000140063.4,ENSMUSG00000029190.19	D5Ertd579e	ENSMUSG00000029190.19	ENSMUST00000140063.4	protein_coding	chr5:36617865-36695961
chr5	36695949	36696000	+	GC_rich	Low_complexity	Low_complexity	chr5	36695969	36695971	-	ENSMUST00000202510.1,ENSMUSG00000029190.19	D5Ertd579e	ENSMUSG00000029190.19	ENSMUST00000202510.1	protein_coding	chr5:36689017-36695970
chr5	36868578	36868712	+	C-rich	Low_complexity	Low_complexity	chr5	36868662	36868664	+	ENSMUST00000201156.1,ENSMUSG00000029120.10	Ppp2r2c	ENSMUSG00000029120.10	ENSMUST00000201156.1	protein_coding	chr5:36868663-36931257
chr5	36938914	36939719	-	RLTR13C2	LTR	ERVK	chr5	36939429	36939431	+	ENSMUST00000138124.1,ENSMUSG00000029120.10	Ppp2r2c	ENSMUSG00000029120.10	ENSMUST00000138124.1	protein_coding	chr5:36939430-36940187
chr5	37092281	37092360	-	5S	rRNA	rRNA	chr5	37092359	37092361	-	ENSMUST00000158082.1,ENSMUSG00000088707.1	Gm25551	ENSMUSG00000088707.1	ENSMUST00000158082.1	rRNA	chr5:37092258-37092360
chr5	37717137	37717207	+	GA-rich	Low_complexity	Low_complexity	chr5	37717170	37717172	-	ENSMUST00000094836.5,ENSMUSG00000029123.8	Stk32b	ENSMUSG00000029123.8	ENSMUST00000094836.5	protein_coding	chr5:37446825-37717171
chr5	37894295	37894368	+	MIR3	SINE	MIR	chr5	37894349	37894351	+	ENSMUST00000202451.1,ENSMUSG00000106718.1	Gm20052	ENSMUSG00000106718.1	ENSMUST00000202451.1	lincRNA	chr5:37894350-37896799
chr5	38134335	38134687	-	IAPLTR1_Mm	LTR	ERVK	chr5	38134394	38134396	+	ENSMUST00000141286.1,ENSMUSG00000029125.14	Stx18	ENSMUSG00000029125.14	ENSMUST00000141286.1	protein_coding	chr5:38134395-38136435
chr5	38136076	38136112	+	(A)n	Simple_repeat	Simple_repeat	chr5	38136096	38136098	-	ENSMUST00000202512.1,ENSMUSG00000107276.1	Gm42858	ENSMUSG00000107276.1	ENSMUST00000202512.1	TEC	chr5:38134394-38136097
chr5	38344055	38344765	-	Lx8b	LINE	L1	chr5	38344434	38344436	+	ENSMUST00000201983.1,ENSMUSG00000106932.1	4930487D11Rik	ENSMUSG00000106932.1	ENSMUST00000201983.1	lincRNA	chr5:38344435-38349197
chr5	38546457	38546524	+	U4	snRNA	snRNA	chr5	38546457	38546459	+	ENSMUST00000082485.1,ENSMUSG00000064419.1	Gm22249	ENSMUSG00000064419.1	ENSMUST00000082485.1	snRNA	chr5:38546458-38546593
chr5	38561602	38561637	+	GC_rich	Low_complexity	Low_complexity	chr5	38561634	38561636	-	ENSMUST00000201260.3,ENSMUSG00000005103.12	Wdr1	ENSMUSG00000005103.12	ENSMUST00000201260.3	protein_coding	chr5:38527587-38561635
chr5	38699708	38699812	-	U6	snRNA	snRNA	chr5	38699811	38699813	-	ENSMUST00000104085.1,ENSMUSG00000077273.1	Gm22779	ENSMUSG00000077273.1	ENSMUST00000104085.1	snRNA	chr5:38699706-38699812
chr5	39443481	39443624	-	MIRc	SINE	MIR	chr5	39443573	39443575	-	ENSMUST00000200814.1,ENSMUSG00000106851.1	4930421C12Rik	ENSMUSG00000106851.1	ENSMUST00000200814.1	TEC	chr5:39442001-39443574
chr5	39603344	39603678	+	ORR1D2	LTR	ERVL-MaLR	chr5	39603530	39603532	-	ENSMUST00000202800.3,ENSMUSG00000106741.3	4930513D17Rik	ENSMUSG00000106741.3	ENSMUST00000202800.3	lincRNA	chr5:39461749-39603531
chr5	39603344	39603678	+	ORR1D2	LTR	ERVL-MaLR	chr5	39603573	39603575	-	ENSMUST00000202742.3,ENSMUSG00000106741.3	4930513D17Rik	ENSMUSG00000106741.3	ENSMUST00000202742.3	lincRNA	chr5:39462565-39603574
chr5	39603344	39603678	+	ORR1D2	LTR	ERVL-MaLR	chr5	39603528	39603530	-	ENSMUST00000200770.1,ENSMUSG00000106741.3	4930513D17Rik	ENSMUSG00000106741.3	ENSMUST00000200770.1	lincRNA	chr5:39476985-39603529
chr5	39755390	39755737	-	RLTR10D2	LTR	ERVK	chr5	39755474	39755476	-	ENSMUST00000117944.1,ENSMUSG00000051022.7	Hs3st1	ENSMUSG00000051022.7	ENSMUST00000117944.1	protein_coding	chr5:39613935-39755475
chr5	39985422	39985810	-	MTB	LTR	ERVL-MaLR	chr5	39985627	39985629	-	ENSMUST00000200925.1,ENSMUSG00000107070.1	Gm35191	ENSMUSG00000107070.1	ENSMUST00000200925.1	lincRNA	chr5:39975671-39985628
chr5	40328261	40328443	-	B2_Mm1t	SINE	B2	chr5	40328437	40328439	+	ENSMUST00000118681.1,ENSMUSG00000082938.1	Gm2810	ENSMUSG00000082938.1	ENSMUST00000118681.1	processed_pseudogene	chr5:40328438-40329427
chr5	43038226	43038323	-	L2a	LINE	L2	chr5	43038235	43038237	-	ENSMUST00000200967.1,ENSMUSG00000107193.1	Gm43700	ENSMUSG00000107193.1	ENSMUST00000200967.1	lincRNA	chr5:43026548-43038236
chr5	43043957	43044158	-	MLT1A0	LTR	ERVL-MaLR	chr5	43044060	43044062	-	ENSMUST00000197060.1,ENSMUSG00000106501.1	Gm42711	ENSMUSG00000106501.1	ENSMUST00000197060.1	lincRNA	chr5:43039737-43044061
chr5	43059051	43059446	+	MTA_Mm	LTR	ERVL-MaLR	chr5	43059254	43059256	+	ENSMUST00000196390.1,ENSMUSG00000105416.1	Gm42553	ENSMUSG00000105416.1	ENSMUST00000196390.1	TEC	chr5:43059255-43060883
chr5	43376188	43376622	+	IAPLTR2a2_Mm	LTR	ERVK	chr5	43376446	43376448	+	ENSMUST00000201312.1,ENSMUSG00000107244.1	Gm43699	ENSMUSG00000107244.1	ENSMUST00000201312.1	lincRNA	chr5:43376447-43379637
chr5	43575788	43575955	-	B2_Mm2	SINE	B2	chr5	43575820	43575822	+	ENSMUST00000197583.1,ENSMUSG00000104912.1	Gm43023	ENSMUSG00000104912.1	ENSMUST00000197583.1	TEC	chr5:43575821-43577926
chr5	43754018	43754619	+	L1M2a	LINE	L1	chr5	43754270	43754272	-	ENSMUST00000196543.1,ENSMUSG00000104728.1	Gm42462	ENSMUSG00000104728.1	ENSMUST00000196543.1	TEC	chr5:43752909-43754271
chr5	43782121	43782216	+	GC_rich	Low_complexity	Low_complexity	chr5	43782142	43782144	-	ENSMUST00000119523.7,ENSMUSG00000039753.16	Fbxl5	ENSMUSG00000039753.16	ENSMUST00000119523.7	protein_coding	chr5:43744615-43782143
chr5	43782121	43782216	+	GC_rich	Low_complexity	Low_complexity	chr5	43782149	43782151	-	ENSMUST00000047857.15,ENSMUSG00000039753.16	Fbxl5	ENSMUSG00000039753.16	ENSMUST00000047857.15	protein_coding	chr5:43744616-43782150
chr5	43782121	43782216	+	GC_rich	Low_complexity	Low_complexity	chr5	43782120	43782122	-	ENSMUST00000087465.10,ENSMUSG00000039753.16	Fbxl5	ENSMUSG00000039753.16	ENSMUST00000087465.10	protein_coding	chr5:43755905-43782121
chr5	43782121	43782216	+	GC_rich	Low_complexity	Low_complexity	chr5	43782136	43782138	-	ENSMUST00000121736.5,ENSMUSG00000039753.16	Fbxl5	ENSMUSG00000039753.16	ENSMUST00000121736.5	protein_coding	chr5:43757885-43782137
chr5	43785673	43786506	-	RMER19B	LTR	ERVK	chr5	43786116	43786118	-	ENSMUST00000197001.1,ENSMUSG00000106609.1	Gm43181	ENSMUSG00000106609.1	ENSMUST00000197001.1	TEC	chr5:43784046-43786117
chr5	43875905	43876232	+	MTEb	LTR	ERVL-MaLR	chr5	43876029	43876031	+	ENSMUST00000123363.2,ENSMUSG00000086479.2	Gm16014	ENSMUSG00000086479.2	ENSMUST00000123363.2	sense_intronic	chr5:43876030-43877304
chr5	43913048	43913147	-	MT2B1	LTR	ERVL	chr5	43913143	43913145	+	ENSMUST00000122204.2,ENSMUSG00000033036.9	Gm7879	ENSMUSG00000033036.9	ENSMUST00000122204.2	protein_coding	chr5:43913144-43913917
chr5	43913048	43913147	-	MT2B1	LTR	ERVL	chr5	43913146	43913148	+	ENSMUST00000200338.1,ENSMUSG00000033036.9	Gm7879	ENSMUSG00000033036.9	ENSMUST00000200338.1	protein_coding	chr5:43913147-43913910
chr5	44044519	44044655	-	MER20	DNA	hAT-Charlie	chr5	44044646	44044648	-	ENSMUST00000197749.1,ENSMUSG00000029086.15	Prom1	ENSMUSG00000029086.15	ENSMUST00000197749.1	protein_coding	chr5:44029680-44044647
chr5	44090735	44091132	+	MTB	LTR	ERVL-MaLR	chr5	44090853	44090855	-	ENSMUST00000196555.1,ENSMUSG00000105264.1	Gm42716	ENSMUSG00000105264.1	ENSMUST00000196555.1	processed_transcript	chr5:44089085-44090854
chr5	44134359	44135056	+	RLTR4_Mm	LTR	ERV1	chr5	44134392	44134394	+	ENSMUST00000198579.1,ENSMUSG00000105373.1	Gm42429	ENSMUSG00000105373.1	ENSMUST00000198579.1	TEC	chr5:44134393-44134950
chr5	44135056	44142644	+	RLTR4_MM-int	LTR	ERV1	chr5	44136619	44136621	+	ENSMUST00000198677.1,ENSMUSG00000105353.1	Gm42428	ENSMUSG00000105353.1	ENSMUST00000198677.1	lincRNA	chr5:44136620-44136921
chr5	44135056	44142644	+	RLTR4_MM-int	LTR	ERV1	chr5	44137979	44137981	+	ENSMUST00000200473.1,ENSMUSG00000105263.1	Gm42427	ENSMUSG00000105263.1	ENSMUST00000200473.1	TEC	chr5:44137980-44143271
chr5	44226625	44226817	+	C-rich	Low_complexity	Low_complexity	chr5	44226625	44226627	-	ENSMUST00000196151.1,ENSMUSG00000046985.11	Tapt1	ENSMUSG00000046985.11	ENSMUST00000196151.1	protein_coding	chr5:44217829-44226626
chr5	44514494	44514630	+	B1_Mm	SINE	Alu	chr5	44514559	44514561	-	ENSMUST00000200244.1,ENSMUSG00000105136.1	8030487O14Rik	ENSMUSG00000105136.1	ENSMUST00000200244.1	TEC	chr5:44513658-44514560
chr5	44517691	44517844	+	B1_Mur4	SINE	Alu	chr5	44517712	44517714	-	ENSMUST00000200675.1,ENSMUSG00000106332.1	Gm43506	ENSMUSG00000106332.1	ENSMUST00000200675.1	TEC	chr5:44516961-44517713
chr5	44641177	44641707	+	MER89	LTR	ERV1	chr5	44641483	44641485	+	ENSMUST00000196411.4,ENSMUSG00000104894.4	Gm43507	ENSMUSG00000104894.4	ENSMUST00000196411.4	antisense	chr5:44641484-44660742
chr5	44683579	44683624	+	(CA)n	Simple_repeat	Simple_repeat	chr5	44683600	44683602	-	ENSMUST00000200033.1,ENSMUSG00000105347.1	Gm43503	ENSMUSG00000105347.1	ENSMUST00000200033.1	TEC	chr5:44680194-44683601
chr5	44799582	44799621	+	(CA)n	Simple_repeat	Simple_repeat	chr5	44799618	44799620	-	ENSMUST00000199534.4,ENSMUSG00000039706.11	Ldb2	ENSMUSG00000039706.11	ENSMUST00000199534.4	protein_coding	chr5:44472132-44799619
chr5	44799582	44799621	+	(CA)n	Simple_repeat	Simple_repeat	chr5	44799601	44799603	-	ENSMUST00000199261.1,ENSMUSG00000039706.11	Ldb2	ENSMUSG00000039706.11	ENSMUST00000199261.1	protein_coding	chr5:44472140-44799602
chr5	44799622	44799642	+	(CAGG)n	Simple_repeat	Simple_repeat	chr5	44799638	44799640	-	ENSMUST00000070748.9,ENSMUSG00000039706.11	Ldb2	ENSMUSG00000039706.11	ENSMUST00000070748.9	protein_coding	chr5:44472132-44799639
chr5	44960950	44967138	-	L1Md_F2	LINE	L1	chr5	44966199	44966201	+	ENSMUST00000199309.4,ENSMUSG00000062496.9	4930431F12Rik	ENSMUSG00000062496.9	ENSMUST00000199309.4	lincRNA	chr5:44966200-44978805
chr5	44960950	44967138	-	L1Md_F2	LINE	L1	chr5	44966582	44966584	+	ENSMUST00000079389.5,ENSMUSG00000062496.9	4930431F12Rik	ENSMUSG00000062496.9	ENSMUST00000079389.5	lincRNA	chr5:44966583-44967867
chr5	44983820	44987683	+	L1Md_F	LINE	L1	chr5	44984241	44984243	-	ENSMUST00000087431.4,ENSMUSG00000067331.5	Gm10205	ENSMUSG00000067331.5	ENSMUST00000087431.4	pseudogene	chr5:44983861-44984242
chr5	45175567	45175744	-	ORR1F	LTR	ERVL-MaLR	chr5	45175692	45175694	-	ENSMUST00000198493.1,ENSMUSG00000029092.9	D5Ertd615e	ENSMUSG00000029092.9	ENSMUST00000198493.1	lincRNA	chr5:45110629-45175693
chr5	45243492	45248659	+	L1Md_A	LINE	L1	chr5	45247306	45247308	-	ENSMUST00000199282.1,ENSMUSG00000105247.1	Gm42519	ENSMUSG00000105247.1	ENSMUST00000199282.1	TEC	chr5:45243652-45247307
chr5	45251822	45252204	-	RLTR10A	LTR	ERVK	chr5	45251928	45251930	-	ENSMUST00000200133.1,ENSMUSG00000104781.1	Gm43303	ENSMUSG00000104781.1	ENSMUST00000200133.1	lincRNA	chr5:45192669-45251929
chr5	45521002	45521081	-	RSINE1	SINE	B4	chr5	45521006	45521008	+	ENSMUST00000015948.13,ENSMUSG00000015804.14	Med28	ENSMUSG00000015804.14	ENSMUST00000015948.13	protein_coding	chr5:45521007-45525605
chr5	45531010	45531073	-	MIR	SINE	MIR	chr5	45531071	45531073	+	ENSMUST00000199190.1,ENSMUSG00000105745.1	Gm42521	ENSMUSG00000105745.1	ENSMUST00000199190.1	TEC	chr5:45531072-45533111
chr5	45535588	45536901	+	Lx7	LINE	L1	chr5	45536541	45536543	-	ENSMUST00000198680.1,ENSMUSG00000015879.8	Fam184b	ENSMUSG00000015879.8	ENSMUST00000198680.1	protein_coding	chr5:45529705-45536542
chr5	45556580	45556782	+	L1MB1	LINE	L1	chr5	45556679	45556681	+	ENSMUST00000199642.1,ENSMUSG00000104837.1	Gm42520	ENSMUSG00000104837.1	ENSMUST00000199642.1	TEC	chr5:45556680-45558181
chr5	45659118	45662468	+	MMERVK10D3_I-int	LTR	ERVK	chr5	45660066	45660068	+	ENSMUST00000199829.1,ENSMUSG00000104665.1	Gm43366	ENSMUSG00000104665.1	ENSMUST00000199829.1	TEC	chr5:45660067-45662721
chr5	45677580	45677978	+	MTD	LTR	ERVL-MaLR	chr5	45677863	45677865	+	ENSMUST00000129562.1,ENSMUSG00000015880.13	Ncapg	ENSMUSG00000015880.13	ENSMUST00000129562.1	protein_coding	chr5:45677864-45680026
chr5	45677580	45677978	+	MTD	LTR	ERVL-MaLR	chr5	45677914	45677916	+	ENSMUST00000198274.1,ENSMUSG00000015880.13	Ncapg	ENSMUSG00000015880.13	ENSMUST00000198274.1	protein_coding	chr5:45677915-45700073
chr5	45761668	45761690	+	AT_rich	Low_complexity	Low_complexity	chr5	45761689	45761691	-	ENSMUST00000195925.1,ENSMUSG00000104852.1	Gm43201	ENSMUSG00000104852.1	ENSMUST00000195925.1	TEC	chr5:45758275-45761690
chr5	45769707	45769872	-	Lx9	LINE	L1	chr5	45769742	45769744	-	ENSMUST00000189967.2,ENSMUSG00000101587.2	Gm29036	ENSMUSG00000101587.2	ENSMUST00000189967.2	transcribed_processed_pseudogene	chr5:45768867-45769743
chr5	45857435	45857473	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	45857466	45857468	-	ENSMUST00000190036.6,ENSMUSG00000015882.17	Lcorl	ENSMUSG00000015882.17	ENSMUST00000190036.6	protein_coding	chr5:45697184-45857467
chr5	45857435	45857473	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	45857466	45857468	-	ENSMUST00000189859.6,ENSMUSG00000015882.17	Lcorl	ENSMUSG00000015882.17	ENSMUST00000189859.6	protein_coding	chr5:45747255-45857467
chr5	47153318	47158644	+	MERVL-int	LTR	ERVL	chr5	47153650	47153652	+	ENSMUST00000196294.1,ENSMUSG00000104660.1	Gm43601	ENSMUSG00000104660.1	ENSMUST00000196294.1	TEC	chr5:47153651-47154595
chr5	47699782	47699997	-	MLT1A0	LTR	ERVL-MaLR	chr5	47699844	47699846	+	ENSMUST00000198805.1,ENSMUSG00000105616.1	Gm3010	ENSMUSG00000105616.1	ENSMUST00000198805.1	processed_pseudogene	chr5:47699845-47700292
chr5	47974999	47975087	+	GA-rich	Low_complexity	Low_complexity	chr5	47975004	47975006	+	ENSMUST00000198188.1,ENSMUSG00000105994.1	Gm43427	ENSMUSG00000105994.1	ENSMUST00000198188.1	processed_pseudogene	chr5:47975005-47975335
chr5	48127061	48127098	+	(TTTA)n	Simple_repeat	Simple_repeat	chr5	48127083	48127085	+	ENSMUST00000197562.1,ENSMUSG00000105502.1	Gm42536	ENSMUSG00000105502.1	ENSMUST00000197562.1	TEC	chr5:48127084-48128696
chr5	48169035	48169260	+	MamSINE1	SINE	tRNA	chr5	48169190	48169192	+	ENSMUST00000173774.7,ENSMUSG00000031558.15	Slit2	ENSMUSG00000031558.15	ENSMUST00000173774.7	protein_coding	chr5:48169191-48192209
chr5	48231435	48231636	+	B4	SINE	B4	chr5	48231489	48231491	+	ENSMUST00000172484.7,ENSMUSG00000031558.15	Slit2	ENSMUSG00000031558.15	ENSMUST00000172484.7	protein_coding	chr5:48231490-48282948
chr5	48244936	48245322	-	ORR1C1	LTR	ERVL-MaLR	chr5	48245201	48245203	+	ENSMUST00000199024.1,ENSMUSG00000031558.15	Slit2	ENSMUSG00000031558.15	ENSMUST00000199024.1	protein_coding	chr5:48245202-48248078
chr5	48324585	48324721	+	B3A	SINE	B2	chr5	48324611	48324613	+	ENSMUST00000197312.1,ENSMUSG00000106604.1	Gm42535	ENSMUSG00000106604.1	ENSMUST00000197312.1	TEC	chr5:48324612-48326010
chr5	48327100	48328181	+	Lx3B	LINE	L1	chr5	48327951	48327953	+	ENSMUST00000196604.1,ENSMUSG00000029089.8	5730480H06Rik	ENSMUSG00000029089.8	ENSMUST00000196604.1	protein_coding	chr5:48327952-48380205
chr5	48391758	48394065	-	L1VL2	LINE	L1	chr5	48392836	48392838	+	ENSMUST00000197072.1,ENSMUSG00000029089.8	5730480H06Rik	ENSMUSG00000029089.8	ENSMUST00000197072.1	protein_coding	chr5:48392837-48398241
chr5	48537928	48538117	-	B4A	SINE	B4	chr5	48537940	48537942	-	ENSMUST00000200461.1,ENSMUSG00000105653.1	Gm43831	ENSMUSG00000105653.1	ENSMUST00000200461.1	TEC	chr5:48535344-48537941
chr5	48754501	48754832	+	RLTR10B	LTR	ERVK	chr5	48754569	48754571	-	ENSMUST00000172363.8,ENSMUSG00000029088.16	Kcnip4	ENSMUSG00000029088.16	ENSMUST00000172363.8	protein_coding	chr5:48389502-48754570
chr5	48754501	48754832	+	RLTR10B	LTR	ERVK	chr5	48754563	48754565	-	ENSMUST00000101214.3,ENSMUSG00000029088.16	Kcnip4	ENSMUSG00000029088.16	ENSMUST00000101214.3	protein_coding	chr5:48396034-48754564
chr5	48803959	48804011	+	A-rich	Low_complexity	Low_complexity	chr5	48804010	48804012	-	ENSMUST00000197753.1,ENSMUSG00000106404.1	Gm42919	ENSMUSG00000106404.1	ENSMUST00000197753.1	TEC	chr5:48802728-48804011
chr5	48923287	48924667	-	L1Md_F2	LINE	L1	chr5	48924115	48924117	+	ENSMUST00000079568.2,ENSMUSG00000057577.2	Gm10025	ENSMUSG00000057577.2	ENSMUST00000079568.2	pseudogene	chr5:48924116-48924491
chr5	48927361	48928282	+	L1_Mus3	LINE	L1	chr5	48928233	48928235	-	ENSMUST00000194196.1,ENSMUSG00000103544.2	Gm10048	ENSMUSG00000103544.2	ENSMUST00000194196.1	TEC	chr5:48927861-48928234
chr5	48928282	48928872	+	Lx	LINE	L1	chr5	48928739	48928741	-	ENSMUST00000200465.1,ENSMUSG00000103544.2	Gm10048	ENSMUSG00000103544.2	ENSMUST00000200465.1	TEC	chr5:48924954-48928740
chr5	48949904	48949980	+	B1_Mm	SINE	Alu	chr5	48949968	48949970	-	ENSMUST00000199939.1,ENSMUSG00000105974.1	Gm43318	ENSMUSG00000105974.1	ENSMUST00000199939.1	TEC	chr5:48948021-48949969
chr5	48998526	48998692	-	L1_Mus2	LINE	L1	chr5	48998538	48998540	-	ENSMUST00000198148.1,ENSMUSG00000106469.1	C030015E24Rik	ENSMUSG00000106469.1	ENSMUST00000198148.1	TEC	chr5:48997712-48998539
chr5	49007502	49007984	+	Charlie1a	DNA	hAT-Charlie	chr5	49007954	49007956	-	ENSMUST00000197924.1,ENSMUSG00000104655.1	Gm43317	ENSMUSG00000104655.1	ENSMUST00000197924.1	TEC	chr5:49005412-49007955
chr5	49018734	49019308	-	L1Md_F2	LINE	L1	chr5	49018806	49018808	-	ENSMUST00000197252.1,ENSMUSG00000105332.1	Gm43316	ENSMUSG00000105332.1	ENSMUST00000197252.1	TEC	chr5:49017513-49018807
chr5	49022327	49022361	+	(GA)n	Simple_repeat	Simple_repeat	chr5	49022337	49022339	-	ENSMUST00000200233.1,ENSMUSG00000104929.1	Gm42766	ENSMUSG00000104929.1	ENSMUST00000200233.1	TEC	chr5:49021007-49022338
chr5	49069929	49070048	-	B1F1	SINE	Alu	chr5	49070002	49070004	+	ENSMUST00000200089.1,ENSMUSG00000105620.1	Gm43047	ENSMUSG00000105620.1	ENSMUST00000200089.1	TEC	chr5:49070003-49073462
chr5	49085543	49086804	+	L1_Mus4	LINE	L1	chr5	49086769	49086771	-	ENSMUST00000197734.1,ENSMUSG00000104661.1	Gm42768	ENSMUSG00000104661.1	ENSMUST00000197734.1	TEC	chr5:49083874-49086770
chr5	49117081	49117579	+	RLTR31_Mm	LTR	ERVK	chr5	49117416	49117418	-	ENSMUST00000198576.1,ENSMUSG00000105922.1	Gm42769	ENSMUSG00000105922.1	ENSMUST00000198576.1	TEC	chr5:49115759-49117417
chr5	49217675	49218253	+	L1Md_T	LINE	L1	chr5	49217687	49217689	-	ENSMUST00000196101.1,ENSMUSG00000105828.1	Gm43048	ENSMUSG00000105828.1	ENSMUST00000196101.1	TEC	chr5:49217301-49217688
chr5	49221714	49222180	+	Lx3C	LINE	L1	chr5	49222160	49222162	-	ENSMUST00000198342.1,ENSMUSG00000106579.1	Gm42771	ENSMUSG00000106579.1	ENSMUST00000198342.1	TEC	chr5:49219676-49222161
chr5	49524890	49524915	+	GC_rich	Low_complexity	Low_complexity	chr5	49524906	49524908	-	ENSMUST00000087395.10,ENSMUSG00000029088.16	Kcnip4	ENSMUSG00000029088.16	ENSMUST00000087395.10	protein_coding	chr5:48389502-49524907
chr5	50001324	50001428	+	B1_Mur1	SINE	Alu	chr5	50001325	50001327	-	ENSMUST00000198818.1,ENSMUSG00000029090.12	Adgra3	ENSMUSG00000029090.12	ENSMUST00000198818.1	protein_coding	chr5:49987521-50001326
chr5	50151298	50151458	+	RMER19B2	LTR	ERVK	chr5	50151332	50151334	+	ENSMUST00000197958.1,ENSMUSG00000104870.1	4930448I18Rik	ENSMUSG00000104870.1	ENSMUST00000197958.1	lincRNA	chr5:50151333-50156095
chr5	50248140	50253248	-	L1Md_T	LINE	L1	chr5	50252761	50252763	+	ENSMUST00000184773.1,ENSMUSG00000099124.1	Mir8117	ENSMUSG00000099124.1	ENSMUST00000184773.1	miRNA	chr5:50252762-50252868
chr5	50679636	50679786	+	ORR1A4	LTR	ERVL-MaLR	chr5	50679715	50679717	+	ENSMUST00000199640.1,ENSMUSG00000106038.1	Gm4962	ENSMUSG00000106038.1	ENSMUST00000199640.1	transcribed_processed_pseudogene	chr5:50679716-50682692
chr5	51223643	51223708	-	RLTR20A4	LTR	ERVK	chr5	51223673	51223675	-	ENSMUST00000199039.1,ENSMUSG00000104635.1	Gm44377	ENSMUSG00000104635.1	ENSMUST00000199039.1	miRNA	chr5:51223588-51223674
chr5	51893125	51893244	-	B4A	SINE	B4	chr5	51893213	51893215	-	ENSMUST00000197640.1,ENSMUSG00000104919.1	Gm42617	ENSMUSG00000104919.1	ENSMUST00000197640.1	TEC	chr5:51891986-51893214
chr5	52117176	52117353	-	MER126	DNA	DNA	chr5	52117311	52117313	+	ENSMUST00000197032.1,ENSMUSG00000104847.1	Gm43177	ENSMUSG00000104847.1	ENSMUST00000197032.1	lincRNA	chr5:52117312-52118523
chr5	52135977	52136474	-	RMER4B	LTR	ERVK	chr5	52136016	52136018	-	ENSMUST00000183815.1,ENSMUSG00000098726.1	Mir6417	ENSMUSG00000098726.1	ENSMUST00000183815.1	miRNA	chr5:52135902-52136017
chr5	52187370	52187510	+	B1_Mur2	SINE	Alu	chr5	52187413	52187415	-	ENSMUST00000196230.1,ENSMUSG00000029169.11	Dhx15	ENSMUSG00000029169.11	ENSMUST00000196230.1	protein_coding	chr5:52184815-52187414
chr5	52239323	52239445	-	B1F	SINE	Alu	chr5	52239335	52239337	+	ENSMUST00000197541.1,ENSMUSG00000105328.1	Gm43180	ENSMUSG00000105328.1	ENSMUST00000197541.1	TEC	chr5:52239336-52242221
chr5	52342254	52342442	+	MLT1B	LTR	ERVL-MaLR	chr5	52342359	52342361	-	ENSMUST00000198797.1,ENSMUSG00000104751.1	Gm43179	ENSMUSG00000104751.1	ENSMUST00000198797.1	lincRNA	chr5:52342086-52342360
chr5	52363676	52363820	+	GA-rich	Low_complexity	Low_complexity	chr5	52363790	52363792	+	ENSMUST00000101208.5,ENSMUSG00000072941.5	Sod3	ENSMUSG00000072941.5	ENSMUST00000101208.5	protein_coding	chr5:52363791-52371418
chr5	52471461	52471495	+	GC_rich	Low_complexity	Low_complexity	chr5	52471482	52471484	-	ENSMUST00000198008.4,ENSMUSG00000045790.10	Ccdc149	ENSMUSG00000045790.10	ENSMUST00000198008.4	protein_coding	chr5:52374651-52471483
chr5	52566302	52566345	+	GC_rich	Low_complexity	Low_complexity	chr5	52566302	52566304	-	ENSMUST00000199942.4,ENSMUSG00000039252.11	Lgi2	ENSMUSG00000039252.11	ENSMUST00000199942.4	protein_coding	chr5:52533517-52566303
chr5	52797881	52798113	+	B4A	SINE	B4	chr5	52798029	52798031	+	ENSMUST00000149612.7,ENSMUSG00000029179.14	Zcchc4	ENSMUSG00000029179.14	ENSMUST00000149612.7	protein_coding	chr5:52798030-52819184
chr5	52833867	52834031	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	52834011	52834013	+	ENSMUST00000031072.13,ENSMUSG00000029176.13	Anapc4	ENSMUSG00000029176.13	ENSMUST00000031072.13	protein_coding	chr5:52834012-52867797
chr5	52847418	52847822	-	ORR1F	LTR	ERVL-MaLR	chr5	52847556	52847558	+	ENSMUST00000141641.1,ENSMUSG00000029176.13	Anapc4	ENSMUSG00000029176.13	ENSMUST00000141641.1	protein_coding	chr5:52847557-52848694
chr5	52850015	52850156	+	B1_Mur1	SINE	Alu	chr5	52850142	52850144	+	ENSMUST00000142035.5,ENSMUSG00000029176.13	Anapc4	ENSMUSG00000029176.13	ENSMUST00000142035.5	protein_coding	chr5:52850143-52859166
chr5	52855344	52855386	+	(TTTTC)n	Simple_repeat	Simple_repeat	chr5	52855346	52855348	+	ENSMUST00000199850.1,ENSMUSG00000029176.13	Anapc4	ENSMUSG00000029176.13	ENSMUST00000199850.1	protein_coding	chr5:52855347-52856973
chr5	52919122	52919287	-	RLTR11A	LTR	ERVK	chr5	52919208	52919210	-	ENSMUST00000196038.1,ENSMUSG00000105054.1	Gm43664	ENSMUSG00000105054.1	ENSMUST00000196038.1	processed_pseudogene	chr5:52917619-52919209
chr5	53143159	53143248	+	5S	rRNA	rRNA	chr5	53143159	53143161	+	ENSMUST00000104128.1,ENSMUSG00000077316.1	n-R5s171	ENSMUSG00000077316.1	ENSMUST00000104128.1	rRNA	chr5:53143160-53143238
chr5	53213424	53213490	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	53213451	53213453	-	ENSMUST00000031090.7,ENSMUSG00000029189.10	Sel1l3	ENSMUSG00000029189.10	ENSMUST00000031090.7	protein_coding	chr5:53107083-53213452
chr5	53346282	53346372	-	5S	rRNA	rRNA	chr5	53346371	53346373	-	ENSMUST00000104508.1,ENSMUSG00000077696.1	n-R5s172	ENSMUSG00000077696.1	ENSMUST00000104508.1	rRNA	chr5:53346259-53346372
chr5	53418570	53418660	+	5S	rRNA	rRNA	chr5	53418572	53418574	+	ENSMUST00000158021.1,ENSMUSG00000088646.1	Gm26486	ENSMUSG00000088646.1	ENSMUST00000158021.1	rRNA	chr5:53418573-53418682
chr5	53522592	53522920	-	ORR1E	LTR	ERVL-MaLR	chr5	53522730	53522732	-	ENSMUST00000200950.1,ENSMUSG00000106807.1	Gm10441	ENSMUSG00000106807.1	ENSMUST00000200950.1	antisense	chr5:53519260-53522731
chr5	53555798	53555925	-	B1F	SINE	Alu	chr5	53555833	53555835	+	ENSMUST00000087360.8,ENSMUSG00000039191.12	Rbpj	ENSMUSG00000039191.12	ENSMUST00000087360.8	protein_coding	chr5:53555834-53657358
chr5	53624788	53625066	+	ORR1C2	LTR	ERVL-MaLR	chr5	53624913	53624915	+	ENSMUST00000200856.3,ENSMUSG00000039191.12	Rbpj	ENSMUSG00000039191.12	ENSMUST00000200856.3	protein_coding	chr5:53624914-53642065
chr5	53890849	53891244	+	MTB	LTR	ERVL-MaLR	chr5	53891103	53891105	+	ENSMUST00000202880.1,ENSMUSG00000039178.9	Tbc1d19	ENSMUSG00000039178.9	ENSMUST00000202880.1	protein_coding	chr5:53891104-53903738
chr5	53905122	53905224	+	MIRc	SINE	MIR	chr5	53905163	53905165	+	ENSMUST00000201536.1,ENSMUSG00000107182.1	Gm43268	ENSMUSG00000107182.1	ENSMUST00000201536.1	TEC	chr5:53905164-53909218
chr5	53918246	53918509	-	L1M4	LINE	L1	chr5	53918443	53918445	+	ENSMUST00000201049.1,ENSMUSG00000107173.1	Gm43266	ENSMUSG00000107173.1	ENSMUST00000201049.1	TEC	chr5:53918444-53920214
chr5	53998486	53998542	+	GC_rich	Low_complexity	Low_complexity	chr5	53998498	53998500	+	ENSMUST00000117661.8,ENSMUSG00000039156.19	Stim2	ENSMUSG00000039156.19	ENSMUST00000117661.8	protein_coding	chr5:53998499-54121057
chr5	54074521	54074930	+	MTA_Mm	LTR	ERVL-MaLR	chr5	54074736	54074738	+	ENSMUST00000200873.1,ENSMUSG00000039156.19	Stim2	ENSMUSG00000039156.19	ENSMUST00000200873.1	protein_coding	chr5:54074737-54104489
chr5	55652724	55653200	+	IAPLTR2_Mm	LTR	ERVK	chr5	55652948	55652950	+	ENSMUST00000199438.1,ENSMUSG00000105186.1	Gm43778	ENSMUSG00000105186.1	ENSMUST00000199438.1	TEC	chr5:55652949-55653147
chr5	57617837	57618066	-	MIRb	SINE	MIR	chr5	57617843	57617845	+	ENSMUST00000200310.1,ENSMUSG00000104924.1	Gm43002	ENSMUSG00000104924.1	ENSMUST00000200310.1	TEC	chr5:57617844-57617998
chr5	57696246	57696583	+	IAPLTR1_Mm	LTR	ERVK	chr5	57696376	57696378	-	ENSMUST00000197362.1,ENSMUSG00000106517.1	Gm42634	ENSMUSG00000106517.1	ENSMUST00000197362.1	TEC	chr5:57695997-57696377
chr5	57717919	57718045	+	G-rich	Low_complexity	Low_complexity	chr5	57717919	57717921	-	ENSMUST00000180708.2,ENSMUSG00000097216.3	4932441J04Rik	ENSMUSG00000097216.3	ENSMUST00000180708.2	processed_transcript	chr5:57570082-57717920
chr5	57717919	57718045	+	G-rich	Low_complexity	Low_complexity	chr5	57717966	57717968	+	ENSMUST00000191837.5,ENSMUSG00000029108.14	Pcdh7	ENSMUSG00000029108.14	ENSMUST00000191837.5	protein_coding	chr5:57717967-58133230
chr5	57717919	57718045	+	G-rich	Low_complexity	Low_complexity	chr5	57718019	57718021	+	ENSMUST00000068110.9,ENSMUSG00000029108.14	Pcdh7	ENSMUSG00000029108.14	ENSMUST00000068110.9	protein_coding	chr5:57718020-57729465
chr5	57904590	57904790	-	Lx8b	LINE	L1	chr5	57904638	57904640	+	ENSMUST00000196307.1,ENSMUSG00000105079.1	Gm43715	ENSMUSG00000105079.1	ENSMUST00000196307.1	TEC	chr5:57904639-57907353
chr5	57925578	57925779	-	B3	SINE	B2	chr5	57925619	57925621	+	ENSMUST00000198654.1,ENSMUSG00000105877.1	Gm42479	ENSMUSG00000105877.1	ENSMUST00000198654.1	TEC	chr5:57925620-57926975
chr5	58452519	58453038	-	RMER19C	LTR	ERVK	chr5	58452998	58453000	-	ENSMUST00000199751.1,ENSMUSG00000105234.1	4930459L07Rik	ENSMUSG00000105234.1	ENSMUST00000199751.1	lincRNA	chr5:58443239-58452999
chr5	59079435	59079836	-	L1_Mur3	LINE	L1	chr5	59079437	59079439	+	ENSMUST00000198717.1,ENSMUSG00000106467.1	Gm43395	ENSMUSG00000106467.1	ENSMUST00000198717.1	TEC	chr5:59079438-59081677
chr5	59214945	59215052	-	U6	snRNA	snRNA	chr5	59215051	59215053	-	ENSMUST00000177609.1,ENSMUSG00000096124.1	Gm22308	ENSMUSG00000096124.1	ENSMUST00000177609.1	snRNA	chr5:59214946-59215052
chr5	59574048	59574429	-	MTA_Mm	LTR	ERVL-MaLR	chr5	59574241	59574243	-	ENSMUST00000198676.1,ENSMUSG00000106634.1	Gm43042	ENSMUSG00000106634.1	ENSMUST00000198676.1	lincRNA	chr5:59569702-59574242
chr5	59956090	59956408	-	ERVB7_1-LTR_MM	LTR	ERVK	chr5	59956139	59956141	-	ENSMUST00000200022.1,ENSMUSG00000104563.1	Gm43041	ENSMUSG00000104563.1	ENSMUST00000200022.1	TEC	chr5:59953511-59956140
chr5	60807311	60808640	-	IAPEz-int	LTR	ERVK	chr5	60807705	60807707	-	ENSMUST00000196492.2,ENSMUSG00000106044.2	Gm42860	ENSMUSG00000106044.2	ENSMUST00000196492.2	TEC	chr5:60803716-60807706
chr5	60945349	60946105	+	Lx2A1	LINE	L1	chr5	60945648	60945650	-	ENSMUST00000199566.1,ENSMUSG00000105903.1	1700014F14Rik	ENSMUSG00000105903.1	ENSMUST00000199566.1	lincRNA	chr5:60940938-60945649
chr5	61338632	61338775	+	MIR	SINE	MIR	chr5	61338732	61338734	-	ENSMUST00000198954.2,ENSMUSG00000106370.2	Gm43382	ENSMUSG00000106370.2	ENSMUST00000198954.2	processed_pseudogene	chr5:61337896-61338733
chr5	61717491	61718667	+	RLTR42-int	LTR	ERVK	chr5	61717665	61717667	-	ENSMUST00000200569.2,ENSMUSG00000105573.2	Gm43384	ENSMUSG00000105573.2	ENSMUST00000200569.2	processed_pseudogene	chr5:61717030-61717666
chr5	62004094	62004363	+	Lx	LINE	L1	chr5	62004219	62004221	+	ENSMUST00000197209.2,ENSMUSG00000106530.2	Gm42430	ENSMUSG00000106530.2	ENSMUST00000197209.2	processed_pseudogene	chr5:62004220-62004835
chr5	62427513	62432978	+	L1Md_T	LINE	L1	chr5	62428718	62428720	+	ENSMUST00000196463.1,ENSMUSG00000105285.1	Gm43238	ENSMUSG00000105285.1	ENSMUST00000196463.1	TEC	chr5:62428719-62429077
chr5	62613332	62613781	+	RMER16A3	LTR	ERVK	chr5	62613457	62613459	-	ENSMUST00000196835.1,ENSMUSG00000105694.1	Gm43237	ENSMUSG00000105694.1	ENSMUST00000196835.1	TEC	chr5:62612415-62613458
chr5	64101428	64101523	+	B1_Mur3	SINE	Alu	chr5	64101506	64101508	-	ENSMUST00000175062.2,ENSMUSG00000094244.1	Gm23967	ENSMUSG00000094244.1	ENSMUST00000175062.2	miRNA	chr5:64101430-64101507
chr5	64107399	64107546	-	B1_Mur4	SINE	Alu	chr5	64107501	64107503	-	ENSMUST00000177427.1,ENSMUSG00000093780.1	Gm22395	ENSMUSG00000093780.1	ENSMUST00000177427.1	miRNA	chr5:64107407-64107502
chr5	64433683	64434218	+	RMER19C	LTR	ERVK	chr5	64433954	64433956	+	ENSMUST00000199362.1,ENSMUSG00000105105.1	Gm31363	ENSMUSG00000105105.1	ENSMUST00000199362.1	lincRNA	chr5:64433955-64473588
chr5	64467944	64468394	+	MLTR14	LTR	ERV1	chr5	64468056	64468058	+	ENSMUST00000197305.1,ENSMUSG00000105251.1	4930526M16Rik	ENSMUSG00000105251.1	ENSMUST00000197305.1	TEC	chr5:64468057-64469010
chr5	64557960	64558313	-	IAPLTR1_Mm	LTR	ERVK	chr5	64558182	64558184	+	ENSMUST00000196532.1,ENSMUSG00000106566.1	Gm43836	ENSMUSG00000106566.1	ENSMUST00000196532.1	TEC	chr5:64558183-64558563
chr5	64558313	64564709	-	IAPEz-int	LTR	ERVK	chr5	64563770	64563772	+	ENSMUST00000195932.1,ENSMUSG00000104961.1	Gm43835	ENSMUSG00000104961.1	ENSMUST00000195932.1	TEC	chr5:64563771-64563919
chr5	64564709	64565062	-	IAPLTR1_Mm	LTR	ERVK	chr5	64564818	64564820	-	ENSMUST00000197120.1,ENSMUSG00000104806.1	Gm42566	ENSMUSG00000104806.1	ENSMUST00000197120.1	TEC	chr5:64564177-64564819
chr5	64647716	64647763	+	(TCCC)n	Simple_repeat	Simple_repeat	chr5	64647748	64647750	-	ENSMUST00000175288.1,ENSMUSG00000093029.1	Gm25306	ENSMUSG00000093029.1	ENSMUST00000175288.1	miRNA	chr5:64647633-64647749
chr5	64708930	64709052	+	(GAAA)n	Simple_repeat	Simple_repeat	chr5	64708947	64708949	-	ENSMUST00000192228.1,ENSMUSG00000097640.7	Gm20033	ENSMUSG00000097640.7	ENSMUST00000192228.1	processed_transcript	chr5:64708211-64708948
chr5	64721228	64721799	+	RMER6C	LTR	ERVK	chr5	64721756	64721758	-	ENSMUST00000180799.2,ENSMUSG00000097640.7	Gm20033	ENSMUSG00000097640.7	ENSMUST00000180799.2	processed_transcript	chr5:64709767-64721757
chr5	64826752	64826914	+	L2b	LINE	L2	chr5	64826808	64826810	+	ENSMUST00000198946.1,ENSMUSG00000029178.14	Klf3	ENSMUSG00000029178.14	ENSMUST00000198946.1	protein_coding	chr5:64826809-64829550
chr5	64970309	64970352	+	(TG)n	Simple_repeat	Simple_repeat	chr5	64970317	64970319	+	ENSMUST00000103854.2,ENSMUSG00000077042.2	Mir574	ENSMUSG00000077042.2	ENSMUST00000103854.2	miRNA	chr5:64970318-64970395
chr5	65136301	65136380	+	5S	rRNA	rRNA	chr5	65136301	65136303	+	ENSMUST00000157123.1,ENSMUSG00000087748.1	Gm25154	ENSMUSG00000087748.1	ENSMUST00000157123.1	rRNA	chr5:65136302-65136420
chr5	65308860	65309195	+	MTE2b	LTR	ERVL-MaLR	chr5	65308993	65308995	-	ENSMUST00000197871.1,ENSMUSG00000105935.1	Gm43628	ENSMUSG00000105935.1	ENSMUST00000197871.1	TEC	chr5:65307808-65308994
chr5	65458291	65458561	+	B4	SINE	B4	chr5	65458510	65458512	-	ENSMUST00000200111.2,ENSMUSG00000037822.12	Smim14	ENSMUSG00000037822.12	ENSMUST00000200111.2	protein_coding	chr5:65453020-65458511
chr5	65477725	65478319	+	L1_Mus3	LINE	L1	chr5	65478060	65478062	-	ENSMUST00000200359.1,ENSMUSG00000104641.1	Gm43290	ENSMUSG00000104641.1	ENSMUST00000200359.1	TEC	chr5:65476505-65478061
chr5	65535643	65535837	+	B2_Mm2	SINE	B2	chr5	65535759	65535761	-	ENSMUST00000199296.1,ENSMUSG00000105601.1	Gm42725	ENSMUSG00000105601.1	ENSMUST00000199296.1	TEC	chr5:65531568-65535760
chr5	65537180	65537201	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr5	65537183	65537185	-	ENSMUST00000149167.1,ENSMUSG00000037822.12	Smim14	ENSMUSG00000037822.12	ENSMUST00000149167.1	protein_coding	chr5:65460558-65537184
chr5	65569382	65569574	-	B2_Mm1t	SINE	B2	chr5	65569382	65569384	+	ENSMUST00000202721.1,ENSMUSG00000029203.16	Ube2k	ENSMUSG00000029203.16	ENSMUST00000202721.1	protein_coding	chr5:65569383-65572160
chr5	65591297	65591444	+	B1_Mus1	SINE	Alu	chr5	65591439	65591441	-	ENSMUST00000202274.1,ENSMUSG00000107102.1	Gm42726	ENSMUSG00000107102.1	ENSMUST00000202274.1	antisense	chr5:65587716-65591440
chr5	65591465	65591615	+	B3	SINE	B2	chr5	65591595	65591597	+	ENSMUST00000202572.1,ENSMUSG00000029203.16	Ube2k	ENSMUSG00000029203.16	ENSMUST00000202572.1	protein_coding	chr5:65591596-65595145
chr5	65611757	65611939	-	B2_Mm2	SINE	B2	chr5	65611772	65611774	-	ENSMUST00000201673.1,ENSMUSG00000029202.12	Pds5a	ENSMUSG00000029202.12	ENSMUST00000201673.1	protein_coding	chr5:65605723-65611773
chr5	65682329	65682347	+	B2_Mm1a	SINE	B2	chr5	65682343	65682345	-	ENSMUST00000202959.1,ENSMUSG00000107050.1	C030017G13Rik	ENSMUSG00000107050.1	ENSMUST00000202959.1	TEC	chr5:65680014-65682344
chr5	65698135	65698172	+	GC_rich	Low_complexity	Low_complexity	chr5	65698167	65698169	-	ENSMUST00000201948.3,ENSMUSG00000029202.12	Pds5a	ENSMUSG00000029202.12	ENSMUST00000201948.3	protein_coding	chr5:65605721-65698168
chr5	65764374	65764438	+	G-rich	Low_complexity	Low_complexity	chr5	65764378	65764380	-	ENSMUST00000202069.1,ENSMUSG00000106978.1	N4bp2os	ENSMUSG00000106978.1	ENSMUST00000202069.1	processed_transcript	chr5:65762372-65764379
chr5	65776903	65777021	-	RMER4B	LTR	ERVK	chr5	65777013	65777015	+	ENSMUST00000158712.1,ENSMUSG00000089337.1	Gm24346	ENSMUSG00000089337.1	ENSMUST00000158712.1	snoRNA	chr5:65777014-65777207
chr5	65801038	65801094	+	(TC)n	Simple_repeat	Simple_repeat	chr5	65801072	65801074	+	ENSMUST00000200843.1,ENSMUSG00000037795.14	N4bp2	ENSMUSG00000037795.14	ENSMUST00000200843.1	protein_coding	chr5:65801073-65804207
chr5	65857304	65857394	+	L2a	LINE	L2	chr5	65857317	65857319	+	ENSMUST00000202233.1,ENSMUSG00000106776.1	Gm42646	ENSMUSG00000106776.1	ENSMUST00000202233.1	TEC	chr5:65857318-65858231
chr5	65862963	65863108	-	B1_Mur3	SINE	Alu	chr5	65863006	65863008	+	ENSMUST00000201533.1,ENSMUSG00000029204.7	Rhoh	ENSMUSG00000029204.7	ENSMUST00000201533.1	protein_coding	chr5:65863007-65893443
chr5	65963773	65963917	+	B3A	SINE	B2	chr5	65963850	65963852	+	ENSMUST00000202931.1,ENSMUSG00000107049.1	Gm43771	ENSMUSG00000107049.1	ENSMUST00000202931.1	TEC	chr5:65963851-65965428
chr5	65975891	65976109	-	B4A	SINE	B4	chr5	65975895	65975897	+	ENSMUST00000201664.1,ENSMUSG00000029205.12	Chrna9	ENSMUSG00000029205.12	ENSMUST00000201664.1	protein_coding	chr5:65975896-65977140
chr5	65989017	65989147	-	B1_Mur3	SINE	Alu	chr5	65989044	65989046	+	ENSMUST00000175329.1,ENSMUSG00000093070.1	Gm25952	ENSMUSG00000093070.1	ENSMUST00000175329.1	miRNA	chr5:65989045-65989118
chr5	65989034	65989174	-	B4	SINE	B4	chr5	65989044	65989046	+	ENSMUST00000175329.1,ENSMUSG00000093070.1	Gm25952	ENSMUSG00000093070.1	ENSMUST00000175329.1	miRNA	chr5:65989045-65989118
chr5	65991056	65991163	+	PB1D9	SINE	Alu	chr5	65991111	65991113	-	ENSMUST00000202278.1,ENSMUSG00000054598.13	9130230L23Rik	ENSMUSG00000054598.13	ENSMUST00000202278.1	protein_coding	chr5:65989090-65991112
chr5	66001781	66001809	+	(A)n	Simple_repeat	Simple_repeat	chr5	66001790	66001792	-	ENSMUST00000201302.1,ENSMUSG00000054598.13	9130230L23Rik	ENSMUSG00000054598.13	ENSMUST00000201302.1	protein_coding	chr5:66001063-66001791
chr5	66072886	66072999	-	PB1D9	SINE	Alu	chr5	66072894	66072896	-	ENSMUST00000201019.1,ENSMUSG00000107304.1	Gm43775	ENSMUSG00000107304.1	ENSMUST00000201019.1	TEC	chr5:66069501-66072895
chr5	66172848	66173134	+	MTD	LTR	ERVL-MaLR	chr5	66173117	66173119	-	ENSMUST00000201544.3,ENSMUSG00000070780.11	Rbm47	ENSMUSG00000070780.11	ENSMUST00000201544.3	protein_coding	chr5:66016549-66173118
chr5	66201201	66201336	-	B4A	SINE	B4	chr5	66201325	66201327	-	ENSMUST00000120182.2,ENSMUSG00000084108.2	Gm15794	ENSMUSG00000084108.2	ENSMUST00000120182.2	processed_pseudogene	chr5:66197912-66201326
chr5	66322917	66323037	+	(TG)n	Simple_repeat	Simple_repeat	chr5	66323016	66323018	-	ENSMUST00000202694.1,ENSMUSG00000106818.1	Gm43790	ENSMUSG00000106818.1	ENSMUST00000202694.1	TEC	chr5:66321005-66323017
chr5	66337673	66337696	+	GC_rich	Low_complexity	Low_complexity	chr5	66337681	66337683	-	ENSMUST00000160775.7,ENSMUSG00000029207.16	Apbb2	ENSMUSG00000029207.16	ENSMUST00000160775.7	protein_coding	chr5:66301872-66337682
chr5	66347145	66347445	-	ORR1F	LTR	ERVL-MaLR	chr5	66347224	66347226	-	ENSMUST00000201645.1,ENSMUSG00000107155.1	Gm43793	ENSMUSG00000107155.1	ENSMUST00000201645.1	TEC	chr5:66345893-66347225
chr5	66432108	66432147	+	(TG)n	Simple_repeat	Simple_repeat	chr5	66432125	66432127	-	ENSMUST00000202492.1,ENSMUSG00000106732.1	Gm43792	ENSMUSG00000106732.1	ENSMUST00000202492.1	TEC	chr5:66429917-66432126
chr5	66444358	66444965	-	L1Md_A	LINE	L1	chr5	66444422	66444424	-	ENSMUST00000200971.1,ENSMUSG00000106772.1	Gm43794	ENSMUSG00000106772.1	ENSMUST00000200971.1	TEC	chr5:66443732-66444423
chr5	66526030	66526228	+	RMER15-int	LTR	ERVL	chr5	66526111	66526113	-	ENSMUST00000202454.1,ENSMUSG00000107091.1	Gm43343	ENSMUSG00000107091.1	ENSMUST00000202454.1	TEC	chr5:66524187-66526112
chr5	66595548	66595590	+	(A)n	Simple_repeat	Simple_repeat	chr5	66595569	66595571	-	ENSMUST00000201865.1,ENSMUSG00000106706.1	C530043K16Rik	ENSMUSG00000106706.1	ENSMUST00000201865.1	TEC	chr5:66592462-66595570
chr5	66618768	66618871	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	66618783	66618785	-	ENSMUST00000159512.7,ENSMUSG00000029207.16	Apbb2	ENSMUSG00000029207.16	ENSMUST00000159512.7	protein_coding	chr5:66298728-66618784
chr5	66618768	66618871	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	66618773	66618775	-	ENSMUST00000162994.7,ENSMUSG00000029207.16	Apbb2	ENSMUSG00000029207.16	ENSMUST00000162994.7	protein_coding	chr5:66452228-66618774
chr5	66688878	66689004	-	ID_B1	SINE	B4	chr5	66688881	66688883	+	ENSMUST00000202376.1,ENSMUSG00000107300.1	Gm43279	ENSMUSG00000107300.1	ENSMUST00000202376.1	TEC	chr5:66688882-66691393
chr5	66967979	66968013	+	(TTTG)n	Simple_repeat	Simple_repeat	chr5	66968004	66968006	+	ENSMUST00000201322.3,ENSMUSG00000037736.18	Limch1	ENSMUSG00000037736.18	ENSMUST00000201322.3	protein_coding	chr5:66968005-67054694
chr5	66976668	66977039	-	ORR1E	LTR	ERVL-MaLR	chr5	66977017	66977019	+	ENSMUST00000147050.7,ENSMUSG00000037736.18	Limch1	ENSMUSG00000037736.18	ENSMUST00000147050.7	protein_coding	chr5:66977018-66999241
chr5	67038099	67043429	+	MERVL-int	LTR	ERVL	chr5	67039375	67039377	-	ENSMUST00000202709.1,ENSMUSG00000106785.1	Gm42713	ENSMUSG00000106785.1	ENSMUST00000202709.1	TEC	chr5:67038432-67039376
chr5	67043547	67044038	+	MT2_Mm	LTR	ERVL	chr5	67043848	67043850	+	ENSMUST00000135334.2,ENSMUSG00000037736.18	Limch1	ENSMUSG00000037736.18	ENSMUST00000135334.2	protein_coding	chr5:67043849-67054646
chr5	67053707	67053826	-	MER53	DNA	hAT	chr5	67053791	67053793	-	ENSMUST00000116951.1,ENSMUSG00000080601.1	Gm23841	ENSMUSG00000080601.1	ENSMUST00000116951.1	miRNA	chr5:67053679-67053792
chr5	67427259	67427346	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	67427329	67427331	-	ENSMUST00000201705.3,ENSMUSG00000092060.4	Bend4	ENSMUSG00000092060.4	ENSMUST00000201705.3	protein_coding	chr5:67392148-67427330
chr5	67463709	67464032	+	ORR1D2	LTR	ERVL-MaLR	chr5	67463896	67463898	+	ENSMUST00000201973.3,ENSMUSG00000107385.3	C330024D21Rik	ENSMUSG00000107385.3	ENSMUST00000201973.3	processed_transcript	chr5:67463897-67470831
chr5	67463709	67464032	+	ORR1D2	LTR	ERVL-MaLR	chr5	67463899	67463901	+	ENSMUST00000202634.3,ENSMUSG00000107385.3	C330024D21Rik	ENSMUSG00000107385.3	ENSMUST00000202634.3	processed_transcript	chr5:67463900-67477632
chr5	67463709	67464032	+	ORR1D2	LTR	ERVL-MaLR	chr5	67463902	67463904	+	ENSMUST00000202828.1,ENSMUSG00000107385.3	C330024D21Rik	ENSMUSG00000107385.3	ENSMUST00000202828.1	processed_transcript	chr5:67463903-67477298
chr5	67635298	67635346	+	C-rich	Low_complexity	Low_complexity	chr5	67635307	67635309	-	ENSMUST00000201718.1,ENSMUSG00000107041.1	Gm42735	ENSMUSG00000107041.1	ENSMUST00000201718.1	TEC	chr5:67633663-67635308
chr5	67836657	67836896	+	RMER4B	LTR	ERVK	chr5	67836827	67836829	-	ENSMUST00000202983.1,ENSMUSG00000106837.1	D630030B08Rik	ENSMUSG00000106837.1	ENSMUST00000202983.1	TEC	chr5:67833350-67836828
chr5	67847052	67847087	+	(CA)n	Simple_repeat	Simple_repeat	chr5	67847064	67847066	+	ENSMUST00000143945.2,ENSMUSG00000087261.2	Gm15477	ENSMUSG00000087261.2	ENSMUST00000143945.2	antisense	chr5:67847065-67909013
chr5	67941014	67941848	-	RMER17A	LTR	ERVK	chr5	67941668	67941670	+	ENSMUST00000202730.3,ENSMUSG00000094719.4	Gm5108	ENSMUSG00000094719.4	ENSMUST00000202730.3	protein_coding	chr5:67941669-67977070
chr5	67941014	67941848	-	RMER17A	LTR	ERVK	chr5	67941668	67941670	+	ENSMUST00000177891.1,ENSMUSG00000094719.4	Gm5108	ENSMUSG00000094719.4	ENSMUST00000177891.1	protein_coding	chr5:67941669-67977070
chr5	67941014	67941848	-	RMER17A	LTR	ERVK	chr5	67941738	67941740	+	ENSMUST00000201736.3,ENSMUSG00000094719.4	Gm5108	ENSMUSG00000094719.4	ENSMUST00000201736.3	protein_coding	chr5:67941739-67977000
chr5	67941014	67941848	-	RMER17A	LTR	ERVK	chr5	67941738	67941740	+	ENSMUST00000201798.1,ENSMUSG00000094719.4	Gm5108	ENSMUSG00000094719.4	ENSMUST00000201798.1	protein_coding	chr5:67941739-67977005
chr5	67983823	67989579	-	L1_Mus2	LINE	L1	chr5	67989006	67989008	-	ENSMUST00000202561.1,ENSMUSG00000107257.1	Gm43028	ENSMUSG00000107257.1	ENSMUST00000202561.1	processed_pseudogene	chr5:67988527-67989007
chr5	68084192	68084663	-	MT2C_Mm	LTR	ERVL	chr5	68084373	68084375	-	ENSMUST00000201764.1,ENSMUSG00000106747.1	Gm43025	ENSMUSG00000106747.1	ENSMUST00000201764.1	TEC	chr5:68082489-68084374
chr5	68566294	68566463	-	URR1B	DNA	hAT-Charlie	chr5	68566295	68566297	-	ENSMUST00000157255.1,ENSMUSG00000087880.1	Gm23605	ENSMUSG00000087880.1	ENSMUST00000157255.1	snoRNA	chr5:68566170-68566296
chr5	69386065	69386172	-	U6	snRNA	snRNA	chr5	69386171	69386173	-	ENSMUST00000082914.1,ENSMUSG00000096290.1	Gm23932	ENSMUSG00000096290.1	ENSMUST00000082914.1	snRNA	chr5:69386066-69386172
chr5	69386172	69386654	-	RMER12B	LTR	ERVK	chr5	69386171	69386173	-	ENSMUST00000082914.1,ENSMUSG00000096290.1	Gm23932	ENSMUSG00000096290.1	ENSMUST00000082914.1	snRNA	chr5:69386066-69386172
chr5	69504783	69505164	-	MTA_Mm	LTR	ERVL-MaLR	chr5	69504959	69504961	-	ENSMUST00000202469.1,ENSMUSG00000106986.1	Gm42887	ENSMUSG00000106986.1	ENSMUST00000202469.1	TEC	chr5:69503842-69504960
chr5	69566719	69566861	+	B1_Mus1	SINE	Alu	chr5	69566723	69566725	+	ENSMUST00000125660.2,ENSMUSG00000029208.16	Guf1	ENSMUSG00000029208.16	ENSMUST00000125660.2	protein_coding	chr5:69566724-69575973
chr5	69919094	69919166	+	U2	snRNA	snRNA	chr5	69919094	69919096	+	ENSMUST00000122630.1,ENSMUSG00000084579.1	Gm23661	ENSMUSG00000084579.1	ENSMUST00000122630.1	snRNA	chr5:69919095-69919181
chr5	70550844	70550947	-	U6	snRNA	snRNA	chr5	70550946	70550948	-	ENSMUST00000083135.1,ENSMUSG00000094803.1	Gm26072	ENSMUSG00000094803.1	ENSMUST00000083135.1	snRNA	chr5:70550841-70550947
chr5	70550947	70551147	-	ORR1D2	LTR	ERVL-MaLR	chr5	70550946	70550948	-	ENSMUST00000083135.1,ENSMUSG00000094803.1	Gm26072	ENSMUSG00000094803.1	ENSMUST00000083135.1	snRNA	chr5:70550841-70550947
chr5	70559676	70561322	+	MERVL-int	LTR	ERVL	chr5	70561264	70561266	+	ENSMUST00000200644.1,ENSMUSG00000106549.1	Gm42653	ENSMUSG00000106549.1	ENSMUST00000200644.1	TEC	chr5:70561265-70564103
chr5	71095842	71095871	+	(GGA)n	Simple_repeat	Simple_repeat	chr5	71095848	71095850	-	ENSMUST00000197284.4,ENSMUSG00000000560.9	Gabra2	ENSMUSG00000000560.9	ENSMUST00000197284.4	protein_coding	chr5:70957597-71095849
chr5	72165654	72165777	-	PB1D7	SINE	Alu	chr5	72165719	72165721	-	ENSMUST00000196152.1,ENSMUSG00000029213.11	Commd8	ENSMUSG00000029213.11	ENSMUST00000196152.1	protein_coding	chr5:72159876-72165720
chr5	72418712	72418819	-	U6	snRNA	snRNA	chr5	72418818	72418820	-	ENSMUST00000179713.1,ENSMUSG00000095112.1	Gm23712	ENSMUSG00000095112.1	ENSMUST00000179713.1	snRNA	chr5:72418713-72418819
chr5	72517271	72517352	+	(TCTA)n	Simple_repeat	Simple_repeat	chr5	72517346	72517348	-	ENSMUST00000149393.1,ENSMUSG00000072889.9	Nfxl1	ENSMUSG00000072889.9	ENSMUST00000149393.1	protein_coding	chr5:72513515-72517347
chr5	72559591	72559612	+	GC_rich	Low_complexity	Low_complexity	chr5	72559598	72559600	-	ENSMUST00000074948.4,ENSMUSG00000072889.9	Nfxl1	ENSMUSG00000072889.9	ENSMUST00000074948.4	protein_coding	chr5:72540364-72559599
chr5	72644202	72644295	-	L2a	LINE	L2	chr5	72644274	72644276	-	ENSMUST00000202230.1,ENSMUSG00000067220.12	Cnga1	ENSMUSG00000067220.12	ENSMUST00000202230.1	protein_coding	chr5:72642287-72644275
chr5	72844272	72845010	+	L1MB5	LINE	L1	chr5	72844448	72844450	-	ENSMUST00000202547.1,ENSMUSG00000029217.16	Tec	ENSMUSG00000029217.16	ENSMUST00000202547.1	protein_coding	chr5:72823462-72844449
chr5	72971178	72971264	-	U6	snRNA	snRNA	chr5	72971263	72971265	-	ENSMUST00000157643.1,ENSMUSG00000088268.1	Gm24776	ENSMUSG00000088268.1	ENSMUST00000157643.1	snRNA	chr5:72971179-72971264
chr5	72971264	72971354	+	Lx7	LINE	L1	chr5	72971263	72971265	-	ENSMUST00000157643.1,ENSMUSG00000088268.1	Gm24776	ENSMUSG00000088268.1	ENSMUST00000157643.1	snRNA	chr5:72971179-72971264
chr5	73045118	73045214	+	B1F	SINE	Alu	chr5	73045153	73045155	-	ENSMUST00000202292.1,ENSMUSG00000107171.1	Gm42572	ENSMUSG00000107171.1	ENSMUST00000202292.1	TEC	chr5:73041777-73045154
chr5	73156869	73157607	+	MTE-int	LTR	ERVL-MaLR	chr5	73157013	73157015	+	ENSMUST00000146728.2,ENSMUSG00000086376.2	1700071G01Rik	ENSMUSG00000086376.2	ENSMUST00000146728.2	antisense	chr5:73157014-73157884
chr5	73283879	73284560	+	Lx9	LINE	L1	chr5	73284174	73284176	-	ENSMUST00000188758.6,ENSMUSG00000100175.6	1700025M24Rik	ENSMUSG00000100175.6	ENSMUST00000188758.6	lincRNA	chr5:73268581-73284175
chr5	73283879	73284560	+	Lx9	LINE	L1	chr5	73284186	73284188	-	ENSMUST00000187620.6,ENSMUSG00000100175.6	1700025M24Rik	ENSMUSG00000100175.6	ENSMUST00000187620.6	lincRNA	chr5:73268581-73284187
chr5	73283879	73284560	+	Lx9	LINE	L1	chr5	73284180	73284182	-	ENSMUST00000191524.2,ENSMUSG00000100175.6	1700025M24Rik	ENSMUSG00000100175.6	ENSMUST00000191524.2	lincRNA	chr5:73268599-73284181
chr5	73338545	73338578	+	CT-rich	Low_complexity	Low_complexity	chr5	73338557	73338559	-	ENSMUST00000202012.1,ENSMUSG00000029153.11	Ociad2	ENSMUSG00000029153.11	ENSMUST00000202012.1	protein_coding	chr5:73323346-73338558
chr5	73459480	73466019	-	IAPEz-int	LTR	ERVK	chr5	73459721	73459723	-	ENSMUST00000202056.1,ENSMUSG00000106675.1	Gm43798	ENSMUSG00000106675.1	ENSMUST00000202056.1	TEC	chr5:73459329-73459722
chr5	73647535	73647611	+	C-rich	Low_complexity	Low_complexity	chr5	73647590	73647592	-	ENSMUST00000201845.1,ENSMUSG00000106773.1	Gm43799	ENSMUSG00000106773.1	ENSMUST00000201845.1	TEC	chr5:73647013-73647591
chr5	73912817	73913255	-	MLT2B4	LTR	ERVL	chr5	73912895	73912897	+	ENSMUST00000202487.1,ENSMUSG00000107027.1	1700019F05Rik	ENSMUSG00000107027.1	ENSMUST00000202487.1	lincRNA	chr5:73912896-73920421
chr5	73946182	73946846	+	RLTR17	LTR	ERVK	chr5	73946380	73946382	+	ENSMUST00000202711.1,ENSMUSG00000106968.1	C78283	ENSMUSG00000106968.1	ENSMUST00000202711.1	lincRNA	chr5:73946381-73948376
chr5	74060020	74060113	-	ORR1G	LTR	ERVL-MaLR	chr5	74060037	74060039	+	ENSMUST00000201934.1,ENSMUSG00000106973.1	Gm43415	ENSMUSG00000106973.1	ENSMUST00000201934.1	TEC	chr5:74060038-74060787
chr5	74068415	74068473	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	74068419	74068421	-	ENSMUST00000119154.7,ENSMUSG00000054814.14	Usp46	ENSMUSG00000054814.14	ENSMUST00000119154.7	protein_coding	chr5:73998453-74068420
chr5	74068415	74068473	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	74068430	74068432	-	ENSMUST00000068058.13,ENSMUSG00000054814.14	Usp46	ENSMUSG00000054814.14	ENSMUST00000068058.13	protein_coding	chr5:73998726-74068431
chr5	74288554	74288646	+	(TTCC)n	Simple_repeat	Simple_repeat	chr5	74288609	74288611	-	ENSMUST00000202465.1,ENSMUSG00000062110.14	Scfd2	ENSMUSG00000062110.14	ENSMUST00000202465.1	protein_coding	chr5:74205081-74288610
chr5	74369912	74369943	+	(CCCCCA)n	Simple_repeat	Simple_repeat	chr5	74369914	74369916	-	ENSMUST00000201755.1,ENSMUSG00000107009.1	6720475M21Rik	ENSMUSG00000107009.1	ENSMUST00000201755.1	TEC	chr5:74367163-74369915
chr5	74575941	74576071	-	B1_Mus2	SINE	Alu	chr5	74575946	74575948	+	ENSMUST00000201412.1,ENSMUSG00000107165.1	Gm43747	ENSMUSG00000107165.1	ENSMUST00000201412.1	TEC	chr5:74575947-74577276
chr5	74989026	74989368	+	IAPEz-int	LTR	ERVK	chr5	74989065	74989067	-	ENSMUST00000201367.1,ENSMUSG00000107306.1	Gm42577	ENSMUSG00000107306.1	ENSMUST00000201367.1	TEC	chr5:74985856-74989066
chr5	75023014	75023084	-	ID4	SINE	ID	chr5	75023080	75023082	-	ENSMUST00000202336.1,ENSMUSG00000107205.1	Gm42576	ENSMUSG00000107205.1	ENSMUST00000202336.1	TEC	chr5:75020236-75023081
chr5	75155301	75155419	+	(GGA)n	Simple_repeat	Simple_repeat	chr5	75155334	75155336	-	ENSMUST00000201051.1,ENSMUSG00000107245.1	Gm42803	ENSMUSG00000107245.1	ENSMUST00000201051.1	TEC	chr5:75154885-75155335
chr5	75372041	75372145	-	U6	snRNA	snRNA	chr5	75372144	75372146	-	ENSMUST00000157585.1,ENSMUSG00000088210.1	Gm22084	ENSMUSG00000088210.1	ENSMUST00000157585.1	snRNA	chr5:75372041-75372145
chr5	75610493	75610674	+	B3A	SINE	B2	chr5	75610573	75610575	+	ENSMUST00000143221.1,ENSMUSG00000005672.12	Kit	ENSMUSG00000005672.12	ENSMUST00000143221.1	protein_coding	chr5:75610574-75620949
chr5	75649188	75649209	+	(T)n	Simple_repeat	Simple_repeat	chr5	75649192	75649194	+	ENSMUST00000201240.1,ENSMUSG00000005672.12	Kit	ENSMUSG00000005672.12	ENSMUST00000201240.1	protein_coding	chr5:75649193-75652296
chr5	75909711	75910067	+	ORR1B2	LTR	ERVL-MaLR	chr5	75909826	75909828	+	ENSMUST00000158158.1,ENSMUSG00000088783.1	Gm25374	ENSMUSG00000088783.1	ENSMUST00000158158.1	miRNA	chr5:75909827-75909927
chr5	76042661	76043117	-	RMER17C	LTR	ERVK	chr5	76043097	76043099	+	ENSMUST00000201402.1,ENSMUSG00000106756.1	Gm32780	ENSMUSG00000106756.1	ENSMUST00000201402.1	lincRNA	chr5:76043098-76055899
chr5	76140258	76140289	+	(GGGA)n	Simple_repeat	Simple_repeat	chr5	76140270	76140272	+	ENSMUST00000138699.7,ENSMUSG00000029233.15	Srd5a3	ENSMUSG00000029233.15	ENSMUST00000138699.7	protein_coding	chr5:76140271-76151515
chr5	76140258	76140289	+	(GGGA)n	Simple_repeat	Simple_repeat	chr5	76140270	76140272	+	ENSMUST00000031143.12,ENSMUSG00000029233.15	Srd5a3	ENSMUSG00000029233.15	ENSMUST00000031143.12	protein_coding	chr5:76140271-76155479
chr5	76146323	76146674	-	ORR1B1	LTR	ERVL-MaLR	chr5	76146636	76146638	+	ENSMUST00000113507.7,ENSMUSG00000029233.15	Srd5a3	ENSMUSG00000029233.15	ENSMUST00000113507.7	protein_coding	chr5:76146637-76155244
chr5	76196384	76196669	+	ORR1A4	LTR	ERVL-MaLR	chr5	76196624	76196626	+	ENSMUST00000119356.1,ENSMUSG00000083152.1	Apc-ps1	ENSMUSG00000083152.1	ENSMUST00000119356.1	transcribed_processed_pseudogene	chr5:76196625-76197094
chr5	76410050	76410387	+	RLTR11A	LTR	ERVK	chr5	76410353	76410355	+	ENSMUST00000201954.1,ENSMUSG00000107160.1	Gm42666	ENSMUSG00000107160.1	ENSMUST00000201954.1	processed_pseudogene	chr5:76410354-76410505
chr5	76868787	76869253	-	RLTR11D	LTR	ERVK	chr5	76869187	76869189	+	ENSMUST00000149216.1,ENSMUSG00000036377.18	C530008M17Rik	ENSMUSG00000036377.18	ENSMUST00000149216.1	protein_coding	chr5:76869188-76870674
chr5	76884583	76884727	+	B1_Mus1	SINE	Alu	chr5	76884628	76884630	-	ENSMUST00000123059.1,ENSMUSG00000055923.16	Aasdh	ENSMUSG00000055923.16	ENSMUST00000123059.1	protein_coding	chr5:76882832-76884629
chr5	76993867	76994041	+	B2_Mm2	SINE	B2	chr5	76993992	76993994	+	ENSMUST00000125732.1,ENSMUSG00000036323.14	Srp72	ENSMUSG00000036323.14	ENSMUST00000125732.1	protein_coding	chr5:76993993-76994903
chr5	77016004	77016058	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	77016022	77016024	+	ENSMUST00000031161.10,ENSMUSG00000029248.14	Thegl	ENSMUSG00000029248.14	ENSMUST00000031161.10	protein_coding	chr5:77016023-77061522
chr5	77016004	77016058	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	77016022	77016024	+	ENSMUST00000117880.7,ENSMUSG00000029248.14	Thegl	ENSMUSG00000029248.14	ENSMUST00000117880.7	protein_coding	chr5:77016023-77061529
chr5	77018728	77018911	+	L2	LINE	L2	chr5	77018862	77018864	-	ENSMUST00000129353.1,ENSMUSG00000086632.1	1700112J05Rik	ENSMUSG00000086632.1	ENSMUST00000129353.1	lincRNA	chr5:77006449-77018863
chr5	77094491	77094566	+	MIR3	SINE	MIR	chr5	77094531	77094533	+	ENSMUST00000148568.1,ENSMUSG00000087541.1	Hopxos	ENSMUSG00000087541.1	ENSMUST00000148568.1	antisense	chr5:77094532-77102303
chr5	77211463	77211583	+	G-rich	Low_complexity	Low_complexity	chr5	77211470	77211472	-	ENSMUST00000065216.10,ENSMUSG00000053030.11	Spink2	ENSMUSG00000053030.11	ENSMUST00000065216.10	protein_coding	chr5:77205107-77211471
chr5	79506995	79507429	+	Lx5	LINE	L1	chr5	79507400	79507402	+	ENSMUST00000202968.1,ENSMUSG00000107183.1	Gm18452	ENSMUSG00000107183.1	ENSMUST00000202968.1	processed_pseudogene	chr5:79507401-79508511
chr5	79750387	79750529	-	U4	snRNA	snRNA	chr5	79750528	79750530	-	ENSMUST00000122486.1,ENSMUSG00000084435.1	Gm23429	ENSMUSG00000084435.1	ENSMUST00000122486.1	snRNA	chr5:79750381-79750529
chr5	80098908	80099014	+	U6	snRNA	snRNA	chr5	80098907	80098909	+	ENSMUST00000177635.1,ENSMUSG00000095594.1	Gm24304	ENSMUSG00000095594.1	ENSMUST00000177635.1	snRNA	chr5:80098908-80099014
chr5	81021184	81021236	+	T-rich	Low_complexity	Low_complexity	chr5	81021198	81021200	+	ENSMUST00000140356.7,ENSMUSG00000037605.16	Adgrl3	ENSMUSG00000037605.16	ENSMUST00000140356.7	protein_coding	chr5:81021199-81467610
chr5	81021184	81021236	+	T-rich	Low_complexity	Low_complexity	chr5	81021201	81021203	+	ENSMUST00000117253.7,ENSMUSG00000037605.16	Adgrl3	ENSMUSG00000037605.16	ENSMUST00000117253.7	protein_coding	chr5:81021202-81792978
chr5	81735894	81735929	+	(TA)n	Simple_repeat	Simple_repeat	chr5	81735926	81735928	+	ENSMUST00000104721.3,ENSMUSG00000106611.1	Gm22048	ENSMUSG00000106611.1	ENSMUST00000104721.3	miRNA	chr5:81735927-81736015
chr5	82120984	82121580	-	Lx2B2	LINE	L1	chr5	82121361	82121363	-	ENSMUST00000201220.1,ENSMUSG00000106860.1	1700008H02Rik	ENSMUSG00000106860.1	ENSMUST00000201220.1	TEC	chr5:82119679-82121362
chr5	82803765	82803846	+	U6	snRNA	snRNA	chr5	82803764	82803766	+	ENSMUST00000158537.1,ENSMUSG00000089162.1	Gm24129	ENSMUSG00000089162.1	ENSMUST00000158537.1	snRNA	chr5:82803765-82803861
chr5	83300414	83300528	-	B1_Mur4	SINE	Alu	chr5	83300451	83300453	-	ENSMUST00000117478.1,ENSMUSG00000081822.1	Gm15626	ENSMUSG00000081822.1	ENSMUST00000117478.1	processed_pseudogene	chr5:83299585-83300452
chr5	83690058	83690125	-	U4	snRNA	snRNA	chr5	83690124	83690126	-	ENSMUST00000122782.1,ENSMUSG00000084731.1	Gm25806	ENSMUSG00000084731.1	ENSMUST00000122782.1	snRNA	chr5:83690004-83690125
chr5	83861278	83863163	+	ORR1A3-int	LTR	ERVL-MaLR	chr5	83863162	83863164	+	ENSMUST00000197408.1,ENSMUSG00000106576.1	Gm4866	ENSMUSG00000106576.1	ENSMUST00000197408.1	unprocessed_pseudogene	chr5:83863163-83863751
chr5	84361985	84362121	+	IMPB_01	Satellite	Satellite	chr5	84362065	84362067	-	ENSMUST00000200076.1,ENSMUSG00000029245.16	Epha5	ENSMUSG00000029245.16	ENSMUST00000200076.1	protein_coding	chr5:84358390-84362066
chr5	84417342	84417371	+	(CTCG)n	Simple_repeat	Simple_repeat	chr5	84417358	84417360	-	ENSMUST00000113401.3,ENSMUSG00000029245.16	Epha5	ENSMUSG00000029245.16	ENSMUST00000113401.3	protein_coding	chr5:84065512-84417359
chr5	86079765	86079939	+	U1	snRNA	snRNA	chr5	86079765	86079767	+	ENSMUST00000082925.1,ENSMUSG00000064859.1	Gm24524	ENSMUSG00000064859.1	ENSMUST00000082925.1	snRNA	chr5:86079766-86079935
chr5	86172503	86172547	+	(CTCG)n	Simple_repeat	Simple_repeat	chr5	86172510	86172512	-	ENSMUST00000113373.1,ENSMUSG00000035898.13	Uba6	ENSMUSG00000035898.13	ENSMUST00000113373.1	protein_coding	chr5:86112342-86172511
chr5	86236854	86236961	-	U6	snRNA	snRNA	chr5	86236960	86236962	-	ENSMUST00000180191.1,ENSMUSG00000094833.1	Gm25473	ENSMUSG00000094833.1	ENSMUST00000180191.1	snRNA	chr5:86236855-86236961
chr5	86418276	86418467	-	L1Md_F2	LINE	L1	chr5	86418344	86418346	-	ENSMUST00000198504.1,ENSMUSG00000072845.3	Tmprss11a	ENSMUSG00000072845.3	ENSMUST00000198504.1	protein_coding	chr5:86415288-86418345
chr5	86685732	86690902	+	L1Md_T	LINE	L1	chr5	86686639	86686641	-	ENSMUST00000197865.1,ENSMUSG00000106507.1	Gm43056	ENSMUSG00000106507.1	ENSMUST00000197865.1	lincRNA	chr5:86683850-86686640
chr5	86806293	86806461	+	B4A	SINE	B4	chr5	86806410	86806412	+	ENSMUST00000198167.1,ENSMUSG00000035851.14	Ythdc1	ENSMUSG00000035851.14	ENSMUST00000198167.1	protein_coding	chr5:86806411-86809745
chr5	86806340	86806467	+	B1_Mus1	SINE	Alu	chr5	86806410	86806412	+	ENSMUST00000198167.1,ENSMUSG00000035851.14	Ythdc1	ENSMUSG00000035851.14	ENSMUST00000198167.1	protein_coding	chr5:86806411-86809745
chr5	86916215	86916322	-	U6	snRNA	snRNA	chr5	86916321	86916323	-	ENSMUST00000177553.1,ENSMUSG00000096303.1	Gm25211	ENSMUSG00000096303.1	ENSMUST00000177553.1	snRNA	chr5:86916216-86916322
chr5	86928902	86929008	-	U6	snRNA	snRNA	chr5	86929007	86929009	-	ENSMUST00000102029.1,ENSMUSG00000075983.1	Gm24121	ENSMUSG00000075983.1	ENSMUST00000102029.1	snRNA	chr5:86928903-86929008
chr5	87014092	87014179	+	ORR1B1	LTR	ERVL-MaLR	chr5	87014159	87014161	+	ENSMUST00000199020.1,ENSMUSG00000105315.1	Gm18635	ENSMUSG00000105315.1	ENSMUST00000199020.1	processed_pseudogene	chr5:87014160-87015219
chr5	87218107	87218587	+	L1Md_A	LINE	L1	chr5	87218110	87218112	-	ENSMUST00000197436.1,ENSMUSG00000105240.1	Gm19418	ENSMUSG00000105240.1	ENSMUST00000197436.1	unprocessed_pseudogene	chr5:87207117-87218111
chr5	87560142	87560577	+	Lx5c	LINE	L1	chr5	87560190	87560192	-	ENSMUST00000166996.1,ENSMUSG00000029273.10	Sult1d1	ENSMUSG00000029273.10	ENSMUST00000166996.1	protein_coding	chr5:87555940-87560191
chr5	87666843	87666995	+	RSINE1	SINE	B4	chr5	87666846	87666848	+	ENSMUST00000197911.4,ENSMUSG00000070702.9	Csn1s1	ENSMUSG00000070702.9	ENSMUST00000197911.4	protein_coding	chr5:87666847-87675080
chr5	87736066	87737496	-	L1_Mus3	LINE	L1	chr5	87737209	87737211	-	ENSMUST00000197766.1,ENSMUSG00000105796.1	Gm42845	ENSMUSG00000105796.1	ENSMUST00000197766.1	processed_pseudogene	chr5:87737106-87737210
chr5	87779580	87779689	-	B1F	SINE	Alu	chr5	87779605	87779607	+	ENSMUST00000200200.1,ENSMUSG00000061937.7	Csn1s2a	ENSMUSG00000061937.7	ENSMUST00000200200.1	protein_coding	chr5:87779606-87781885
chr5	87811338	87811708	-	Lx6	LINE	L1	chr5	87811346	87811348	+	ENSMUST00000200098.1,ENSMUSG00000061388.11	Csn1s2b	ENSMUSG00000061388.11	ENSMUST00000200098.1	protein_coding	chr5:87811347-87813409
chr5	88111522	88111588	+	RMER19B	LTR	ERVK	chr5	88111529	88111531	-	ENSMUST00000113257.1,ENSMUSG00000079439.1	Gm11116	ENSMUSG00000079439.1	ENSMUST00000113257.1	protein_coding	chr5:88110567-88111530
chr5	88423126	88423231	+	L1Md_A	LINE	L1	chr5	88423214	88423216	+	ENSMUST00000198577.1,ENSMUSG00000106633.1	Gm43431	ENSMUSG00000106633.1	ENSMUST00000198577.1	processed_pseudogene	chr5:88423215-88423554
chr5	88564910	88565085	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	88565039	88565041	+	ENSMUST00000196894.4,ENSMUSG00000029291.11	Rufy3	ENSMUSG00000029291.11	ENSMUST00000196894.4	protein_coding	chr5:88565040-88642695
chr5	88564910	88565085	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr5	88565039	88565041	+	ENSMUST00000198965.4,ENSMUSG00000029291.11	Rufy3	ENSMUSG00000029291.11	ENSMUST00000198965.4	protein_coding	chr5:88565040-88651392
chr5	88887204	88887264	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	88887260	88887262	+	ENSMUST00000135283.1,ENSMUSG00000060961.14	Slc4a4	ENSMUSG00000060961.14	ENSMUST00000135283.1	protein_coding	chr5:88887261-88888286
chr5	89681915	89682157	+	7SK	RNA	RNA	chr5	89681915	89681917	+	ENSMUST00000122551.1,ENSMUSG00000084500.1	Gm25320	ENSMUSG00000084500.1	ENSMUST00000122551.1	misc_RNA	chr5:89681916-89682239
chr5	90215917	90216028	+	RSINE1	SINE	B4	chr5	90216021	90216023	-	ENSMUST00000200475.1,ENSMUSG00000035505.14	Cox18	ENSMUSG00000035505.14	ENSMUST00000200475.1	protein_coding	chr5:90214730-90216022
chr5	90217792	90217898	-	B1F2	SINE	Alu	chr5	90217878	90217880	-	ENSMUST00000144898.3,ENSMUSG00000035505.14	Cox18	ENSMUSG00000035505.14	ENSMUST00000144898.3	protein_coding	chr5:90214727-90217879
chr5	90219763	90219849	+	ID_B1	SINE	B4	chr5	90219790	90219792	-	ENSMUST00000131068.1,ENSMUSG00000035505.14	Cox18	ENSMUSG00000035505.14	ENSMUST00000131068.1	protein_coding	chr5:90217534-90219791
chr5	90239645	90239829	+	B3	SINE	B2	chr5	90239687	90239689	-	ENSMUST00000197327.1,ENSMUSG00000055204.15	Ankrd17	ENSMUSG00000055204.15	ENSMUST00000197327.1	protein_coding	chr5:90236414-90239688
chr5	90295015	90295161	+	B1_Mus2	SINE	Alu	chr5	90295131	90295133	-	ENSMUST00000199905.1,ENSMUSG00000055204.15	Ankrd17	ENSMUSG00000055204.15	ENSMUST00000199905.1	protein_coding	chr5:90292291-90295132
chr5	90304067	90304141	+	A-rich	Low_complexity	Low_complexity	chr5	90304103	90304105	-	ENSMUST00000200012.4,ENSMUSG00000055204.15	Ankrd17	ENSMUSG00000055204.15	ENSMUST00000200012.4	protein_coding	chr5:90252712-90304104
chr5	90366149	90366205	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	90366184	90366186	-	ENSMUST00000218526.1,ENSMUSG00000055204.15	Ankrd17	ENSMUSG00000055204.15	ENSMUST00000218526.1	protein_coding	chr5:90253193-90366185
chr5	90366149	90366205	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	90366184	90366186	-	ENSMUST00000202226.1,ENSMUSG00000055204.15	Ankrd17	ENSMUSG00000055204.15	ENSMUST00000202226.1	protein_coding	chr5:90364095-90366185
chr5	90803214	90803512	-	B4	SINE	B4	chr5	90803260	90803262	+	ENSMUST00000202859.1,ENSMUSG00000106957.1	Gm43085	ENSMUSG00000106957.1	ENSMUST00000202859.1	TEC	chr5:90803261-90806392
chr5	90893379	90893467	+	5S	rRNA	rRNA	chr5	90893379	90893381	+	ENSMUST00000157450.1,ENSMUSG00000088075.1	Gm22816	ENSMUSG00000088075.1	ENSMUST00000157450.1	rRNA	chr5:90893380-90893496
chr5	90922590	90923246	+	BGLII_B	LTR	ERVK	chr5	90922731	90922733	+	ENSMUST00000202683.1,ENSMUSG00000107218.1	Gm42530	ENSMUSG00000107218.1	ENSMUST00000202683.1	lincRNA	chr5:90922732-90924902
chr5	91217897	91218004	-	U6	snRNA	snRNA	chr5	91218003	91218005	-	ENSMUST00000178688.1,ENSMUSG00000094938.1	Gm23092	ENSMUSG00000094938.1	ENSMUST00000178688.1	snRNA	chr5:91217898-91218004
chr5	91218004	91218340	-	ORR1E	LTR	ERVL-MaLR	chr5	91218003	91218005	-	ENSMUST00000178688.1,ENSMUSG00000094938.1	Gm23092	ENSMUSG00000094938.1	ENSMUST00000178688.1	snRNA	chr5:91217898-91218004
chr5	91953734	91953830	+	MIR3	SINE	MIR	chr5	91953753	91953755	-	ENSMUST00000138351.1,ENSMUSG00000029397.15	Rchy1	ENSMUSG00000029397.15	ENSMUST00000138351.1	protein_coding	chr5:91951854-91953754
chr5	91958890	91958978	+	ORR1D2	LTR	ERVL-MaLR	chr5	91958961	91958963	-	ENSMUST00000202883.1,ENSMUSG00000107200.1	Gm43039	ENSMUSG00000107200.1	ENSMUST00000202883.1	TEC	chr5:91958000-91958962
chr5	91962719	91962752	+	(TCC)n	Simple_repeat	Simple_repeat	chr5	91962734	91962736	-	ENSMUST00000169948.1,ENSMUSG00000029397.15	Rchy1	ENSMUSG00000029397.15	ENSMUST00000169948.1	protein_coding	chr5:91949001-91962735
chr5	91962719	91962752	+	(TCC)n	Simple_repeat	Simple_repeat	chr5	91962725	91962727	-	ENSMUST00000200905.1,ENSMUSG00000029397.15	Rchy1	ENSMUSG00000029397.15	ENSMUST00000200905.1	protein_coding	chr5:91961681-91962726
chr5	91982705	91982912	+	7SK	RNA	RNA	chr5	91982704	91982706	+	ENSMUST00000157477.1,ENSMUSG00000088102.1	Gm24113	ENSMUSG00000088102.1	ENSMUST00000157477.1	misc_RNA	chr5:91982705-91982980
chr5	92043871	92044047	-	B3	SINE	B2	chr5	92043882	92043884	-	ENSMUST00000201895.1,ENSMUSG00000029403.14	Cdkl2	ENSMUSG00000029403.14	ENSMUST00000201895.1	protein_coding	chr5:92042267-92043883
chr5	92067480	92067598	+	PB1D9	SINE	Alu	chr5	92067531	92067533	-	ENSMUST00000202352.3,ENSMUSG00000029405.16	G3bp2	ENSMUSG00000029405.16	ENSMUST00000202352.3	protein_coding	chr5:92056360-92067532
chr5	92067480	92067598	+	PB1D9	SINE	Alu	chr5	92067522	92067524	-	ENSMUST00000201824.1,ENSMUSG00000029405.16	G3bp2	ENSMUSG00000029405.16	ENSMUST00000201824.1	protein_coding	chr5:92057821-92067523
chr5	92073504	92073642	+	B1_Mus2	SINE	Alu	chr5	92073519	92073521	-	ENSMUST00000202123.3,ENSMUSG00000029405.16	G3bp2	ENSMUSG00000029405.16	ENSMUST00000202123.3	protein_coding	chr5:92066535-92073520
chr5	92191756	92191928	+	B4A	SINE	B4	chr5	92191916	92191918	-	ENSMUST00000202399.1,ENSMUSG00000107354.1	Gm43040	ENSMUSG00000107354.1	ENSMUST00000202399.1	TEC	chr5:92191360-92191917
chr5	92215384	92215409	+	(TG)n	Simple_repeat	Simple_repeat	chr5	92215407	92215409	-	ENSMUST00000201332.3,ENSMUSG00000029409.7	U90926	ENSMUSG00000029409.7	ENSMUST00000201332.3	protein_coding	chr5:92209893-92215408
chr5	92215384	92215409	+	(TG)n	Simple_repeat	Simple_repeat	chr5	92215407	92215409	-	ENSMUST00000031356.4,ENSMUSG00000029409.7	U90926	ENSMUSG00000029409.7	ENSMUST00000031356.4	protein_coding	chr5:92209896-92215408
chr5	92310420	92310625	+	ID_B1	SINE	B4	chr5	92310478	92310480	-	ENSMUST00000202870.1,ENSMUSG00000029415.4	Sdad1	ENSMUSG00000029415.4	ENSMUST00000202870.1	protein_coding	chr5:92305735-92310479
chr5	92571457	92571802	+	L2b	LINE	L2	chr5	92571476	92571478	+	ENSMUST00000176621.7,ENSMUSG00000057068.15	Fam47e	ENSMUSG00000057068.15	ENSMUST00000176621.7	protein_coding	chr5:92571477-92590882
chr5	92571457	92571802	+	L2b	LINE	L2	chr5	92571535	92571537	+	ENSMUST00000175974.1,ENSMUSG00000057068.15	Fam47e	ENSMUSG00000057068.15	ENSMUST00000175974.1	protein_coding	chr5:92571536-92591278
chr5	92571457	92571802	+	L2b	LINE	L2	chr5	92571536	92571538	+	ENSMUST00000131166.8,ENSMUSG00000057068.15	Fam47e	ENSMUSG00000057068.15	ENSMUST00000131166.8	protein_coding	chr5:92571537-92591279
chr5	92571457	92571802	+	L2b	LINE	L2	chr5	92571542	92571544	+	ENSMUST00000176448.7,ENSMUSG00000057068.15	Fam47e	ENSMUSG00000057068.15	ENSMUST00000176448.7	protein_coding	chr5:92571543-92585384
chr5	92571457	92571802	+	L2b	LINE	L2	chr5	92571555	92571557	+	ENSMUST00000082382.7,ENSMUSG00000057068.15	Fam47e	ENSMUSG00000057068.15	ENSMUST00000082382.7	protein_coding	chr5:92571556-92590731
chr5	92675266	92675432	+	G-rich	Low_complexity	Low_complexity	chr5	92675270	92675272	-	ENSMUST00000150359.1,ENSMUSG00000050050.17	Ccdc158	ENSMUSG00000050050.17	ENSMUST00000150359.1	protein_coding	chr5:92652054-92675271
chr5	92788554	92788714	+	ID_B1	SINE	B4	chr5	92788561	92788563	-	ENSMUST00000158643.1,ENSMUSG00000089268.1	Mir1961	ENSMUSG00000089268.1	ENSMUST00000158643.1	miRNA	chr5:92788451-92788562
chr5	92947764	92947908	-	B4A	SINE	B4	chr5	92947884	92947886	+	ENSMUST00000200869.1,ENSMUSG00000029381.16	Shroom3	ENSMUSG00000029381.16	ENSMUST00000200869.1	protein_coding	chr5:92947885-92948795
chr5	93493532	93494008	-	MT2C_Mm	LTR	ERVL	chr5	93493700	93493702	-	ENSMUST00000201432.3,ENSMUSG00000096044.4	Gm16427	ENSMUSG00000096044.4	ENSMUST00000201432.3	protein_coding	chr5:93481829-93493701
chr5	93540093	93540437	-	MTEa	LTR	ERVL-MaLR	chr5	93540199	93540201	-	ENSMUST00000200745.1,ENSMUSG00000096044.4	Gm16427	ENSMUSG00000096044.4	ENSMUST00000200745.1	protein_coding	chr5:93482216-93540200
chr5	93843456	93843932	+	MT2C_Mm	LTR	ERVL	chr5	93843775	93843777	+	ENSMUST00000201555.1,ENSMUSG00000107392.1	Gm7792	ENSMUSG00000107392.1	ENSMUST00000201555.1	protein_coding	chr5:93843776-93856107
chr5	94377033	94377526	+	MT2_Mm	LTR	ERVL	chr5	94377316	94377318	+	ENSMUST00000202253.1,ENSMUSG00000073497.6	AA792892	ENSMUSG00000073497.6	ENSMUST00000202253.1	protein_coding	chr5:94377317-94385079
chr5	94525996	94526472	+	MT2C_Mm	LTR	ERVL	chr5	94526286	94526288	+	ENSMUST00000201138.3,ENSMUSG00000095074.4	Gm3139	ENSMUSG00000095074.4	ENSMUST00000201138.3	protein_coding	chr5:94526287-94546423
chr5	94525996	94526472	+	MT2C_Mm	LTR	ERVL	chr5	94526303	94526305	+	ENSMUST00000202642.3,ENSMUSG00000095074.4	Gm3139	ENSMUSG00000095074.4	ENSMUST00000202642.3	protein_coding	chr5:94526304-94538371
chr5	94865145	94865621	+	MT2C_Mm	LTR	ERVL	chr5	94865435	94865437	+	ENSMUST00000202911.3,ENSMUSG00000095954.4	Gm3183	ENSMUSG00000095954.4	ENSMUST00000202911.3	protein_coding	chr5:94865436-94885388
chr5	94865145	94865621	+	MT2C_Mm	LTR	ERVL	chr5	94865452	94865454	+	ENSMUST00000201703.3,ENSMUSG00000095954.4	Gm3183	ENSMUSG00000095954.4	ENSMUST00000201703.3	protein_coding	chr5:94865453-94877335
chr5	95182316	95182792	+	MT2C_Mm	LTR	ERVL	chr5	95182623	95182625	+	ENSMUST00000201663.3,ENSMUSG00000095996.4	Gm16513	ENSMUSG00000095996.4	ENSMUST00000201663.3	protein_coding	chr5:95182624-95194966
chr5	95473237	95473709	+	MT2C_Mm	LTR	ERVL	chr5	95473552	95473554	+	ENSMUST00000202481.1,ENSMUSG00000070677.8	D5Ertd577e	ENSMUSG00000070677.8	ENSMUST00000202481.1	protein_coding	chr5:95473553-95485587
chr5	95510438	95510912	+	MT2C_Mm	LTR	ERVL	chr5	95510757	95510759	+	ENSMUST00000201629.3,ENSMUSG00000079423.6	Gm3286	ENSMUSG00000079423.6	ENSMUST00000201629.3	protein_coding	chr5:95510758-95522953
chr5	95867333	95867440	+	U6	snRNA	snRNA	chr5	95867333	95867335	+	ENSMUST00000083912.2,ENSMUSG00000094471.1	Gm25937	ENSMUSG00000094471.1	ENSMUST00000083912.2	snRNA	chr5:95867334-95867440
chr5	96086905	96086933	+	AT_rich	Low_complexity	Low_complexity	chr5	96086932	96086934	-	ENSMUST00000152490.7,ENSMUSG00000034724.18	Cnot6l	ENSMUSG00000034724.18	ENSMUST00000152490.7	protein_coding	chr5:96075576-96086933
chr5	96161498	96161547	+	(CA)n	Simple_repeat	Simple_repeat	chr5	96161546	96161548	-	ENSMUST00000122003.7,ENSMUSG00000034724.18	Cnot6l	ENSMUSG00000034724.18	ENSMUST00000122003.7	protein_coding	chr5:96076801-96161547
chr5	96161547	96161574	+	GC_rich	Low_complexity	Low_complexity	chr5	96161546	96161548	-	ENSMUST00000122003.7,ENSMUSG00000034724.18	Cnot6l	ENSMUSG00000034724.18	ENSMUST00000122003.7	protein_coding	chr5:96076801-96161547
chr5	96161854	96161888	+	GC_rich	Low_complexity	Low_complexity	chr5	96161870	96161872	-	ENSMUST00000141383.7,ENSMUSG00000034724.18	Cnot6l	ENSMUSG00000034724.18	ENSMUST00000141383.7	protein_coding	chr5:96131061-96161871
chr5	96161962	96162042	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	96161989	96161991	-	ENSMUST00000155901.7,ENSMUSG00000034724.18	Cnot6l	ENSMUSG00000034724.18	ENSMUST00000155901.7	protein_coding	chr5:96070333-96161990
chr5	96485498	96485896	-	IAPLTR1_Mm	LTR	ERVK	chr5	96485765	96485767	+	ENSMUST00000199565.1,ENSMUSG00000105446.1	Gm42605	ENSMUSG00000105446.1	ENSMUST00000199565.1	TEC	chr5:96485766-96486150
chr5	96798162	96798283	+	B4	SINE	B4	chr5	96798206	96798208	+	ENSMUST00000199893.1,ENSMUSG00000105356.1	Gm42603	ENSMUSG00000105356.1	ENSMUST00000199893.1	TEC	chr5:96798207-96800352
chr5	96827509	96828132	-	L1MC2	LINE	L1	chr5	96827929	96827931	+	ENSMUST00000197196.1,ENSMUSG00000029484.12	Anxa3	ENSMUSG00000029484.12	ENSMUST00000197196.1	protein_coding	chr5:96827930-96830488
chr5	96879236	96879374	-	LTR16C	LTR	ERVL	chr5	96879341	96879343	+	ENSMUST00000197025.1,ENSMUSG00000106319.1	Gm42601	ENSMUSG00000106319.1	ENSMUST00000197025.1	lincRNA	chr5:96879342-96891172
chr5	96907632	96907821	+	U2	snRNA	snRNA	chr5	96907631	96907633	+	ENSMUST00000082616.1,ENSMUSG00000064550.1	Gm24623	ENSMUSG00000064550.1	ENSMUST00000082616.1	snRNA	chr5:96907632-96907825
chr5	96997594	96997693	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	96997688	96997690	+	ENSMUST00000112974.5,ENSMUSG00000034663.13	Bmp2k	ENSMUSG00000034663.13	ENSMUST00000112974.5	protein_coding	chr5:96997689-97069649
chr5	96997594	96997693	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	96997688	96997690	+	ENSMUST00000035635.9,ENSMUSG00000034663.13	Bmp2k	ENSMUSG00000034663.13	ENSMUST00000035635.9	protein_coding	chr5:96997689-97091867
chr5	97046166	97046232	+	ID4_	SINE	ID	chr5	97046180	97046182	+	ENSMUST00000198963.1,ENSMUSG00000104591.1	Gm43145	ENSMUSG00000104591.1	ENSMUST00000198963.1	TEC	chr5:97046181-97046808
chr5	98185200	98185232	+	(CAG)n	Simple_repeat	Simple_repeat	chr5	98185209	98185211	-	ENSMUST00000197527.1,ENSMUSG00000045238.9	A730035I17Rik	ENSMUSG00000045238.9	ENSMUST00000197527.1	antisense	chr5:98183137-98185210
chr5	98185200	98185232	+	(CAG)n	Simple_repeat	Simple_repeat	chr5	98185212	98185214	-	ENSMUST00000198172.1,ENSMUSG00000045238.9	A730035I17Rik	ENSMUSG00000045238.9	ENSMUST00000198172.1	antisense	chr5:98184447-98185213
chr5	98185762	98185850	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	98185781	98185783	-	ENSMUST00000197382.1,ENSMUSG00000045238.9	A730035I17Rik	ENSMUSG00000045238.9	ENSMUST00000197382.1	antisense	chr5:98184024-98185782
chr5	98185984	98186040	+	GC_rich	Low_complexity	Low_complexity	chr5	98185983	98185985	-	ENSMUST00000057889.7,ENSMUSG00000045238.9	A730035I17Rik	ENSMUSG00000045238.9	ENSMUST00000057889.7	antisense	chr5:98183121-98185984
chr5	98185984	98186040	+	GC_rich	Low_complexity	Low_complexity	chr5	98185983	98185985	-	ENSMUST00000205851.1,ENSMUSG00000045238.9	A730035I17Rik	ENSMUSG00000045238.9	ENSMUST00000205851.1	antisense	chr5:98185296-98185984
chr5	98453618	98453748	-	L1Md_F2	LINE	L1	chr5	98453746	98453748	+	ENSMUST00000198933.1,ENSMUSG00000106273.1	Gm43767	ENSMUSG00000106273.1	ENSMUST00000198933.1	processed_pseudogene	chr5:98453747-98454127
chr5	98854348	98854431	+	C-rich	Low_complexity	Low_complexity	chr5	98854414	98854416	+	ENSMUST00000197143.1,ENSMUSG00000029335.5	Bmp3	ENSMUSG00000029335.5	ENSMUST00000197143.1	protein_coding	chr5:98854415-98873760
chr5	99036963	99037134	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr5	99037034	99037036	-	ENSMUST00000031277.6,ENSMUSG00000029334.14	Prkg2	ENSMUSG00000029334.14	ENSMUST00000031277.6	protein_coding	chr5:98931720-99037035
chr5	99171414	99171807	+	MTC	LTR	ERVL-MaLR	chr5	99171420	99171422	-	ENSMUST00000198339.2,ENSMUSG00000105579.2	Gm43251	ENSMUSG00000105579.2	ENSMUST00000198339.2	lincRNA	chr5:99039063-99171421
chr5	99966361	99966509	+	B1_Mm	SINE	Alu	chr5	99966386	99966388	-	ENSMUST00000170654.1,ENSMUSG00000000568.15	Hnrnpd	ENSMUSG00000000568.15	ENSMUST00000170654.1	protein_coding	chr5:99964743-99966387
chr5	100122557	100123124	-	MT2B2	LTR	ERVL	chr5	100122795	100122797	-	ENSMUST00000124145.7,ENSMUSG00000050640.16	Tmem150c	ENSMUSG00000050640.16	ENSMUST00000124145.7	protein_coding	chr5:100083947-100122796
chr5	100159226	100159296	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	100159280	100159282	-	ENSMUST00000139520.2,ENSMUSG00000050640.16	Tmem150c	ENSMUSG00000050640.16	ENSMUST00000139520.2	protein_coding	chr5:100086127-100159281
chr5	100210473	100211144	+	RMER19B	LTR	ERVK	chr5	100210691	100210693	+	ENSMUST00000185221.6,ENSMUSG00000100157.6	2310034O05Rik	ENSMUSG00000100157.6	ENSMUST00000185221.6	lincRNA	chr5:100210692-100218049
chr5	100210473	100211144	+	RMER19B	LTR	ERVK	chr5	100210707	100210709	+	ENSMUST00000188902.1,ENSMUSG00000100157.6	2310034O05Rik	ENSMUSG00000100157.6	ENSMUST00000188902.1	lincRNA	chr5:100210708-100216741
chr5	100563364	100563498	-	PB1D7	SINE	Alu	chr5	100563422	100563424	-	ENSMUST00000112910.1,ENSMUSG00000029322.12	Plac8	ENSMUSG00000029322.12	ENSMUST00000112910.1	protein_coding	chr5:100553727-100563423
chr5	100719713	100719787	+	C-rich	Low_complexity	Low_complexity	chr5	100719715	100719717	-	ENSMUST00000045617.14,ENSMUSG00000035273.14	Hpse	ENSMUSG00000035273.14	ENSMUST00000045617.14	protein_coding	chr5:100679484-100719716
chr5	100807190	100807368	+	ID_B1	SINE	B4	chr5	100807325	100807327	-	ENSMUST00000145429.1,ENSMUSG00000035234.18	Abraxas1	ENSMUSG00000035234.18	ENSMUST00000145429.1	protein_coding	chr5:100806337-100807326
chr5	100845701	100845830	-	B1F	SINE	Alu	chr5	100845712	100845714	+	ENSMUST00000144623.1,ENSMUSG00000029314.14	Gpat3	ENSMUSG00000029314.14	ENSMUST00000144623.1	protein_coding	chr5:100845713-100846810
chr5	101837257	101837662	+	BGLII	LTR	ERVK	chr5	101837415	101837417	+	ENSMUST00000173528.7,ENSMUSG00000092354.7	Gm20548	ENSMUSG00000092354.7	ENSMUST00000173528.7	antisense	chr5:101837416-101846199
chr5	101837257	101837662	+	BGLII	LTR	ERVK	chr5	101837441	101837443	+	ENSMUST00000173965.7,ENSMUSG00000092354.7	Gm20548	ENSMUSG00000092354.7	ENSMUST00000173965.7	antisense	chr5:101837442-101844277
chr5	101837257	101837662	+	BGLII	LTR	ERVK	chr5	101837451	101837453	+	ENSMUST00000174864.1,ENSMUSG00000092354.7	Gm20548	ENSMUSG00000092354.7	ENSMUST00000174864.1	antisense	chr5:101837452-101844240
chr5	101837257	101837662	+	BGLII	LTR	ERVK	chr5	101837457	101837459	+	ENSMUST00000174528.7,ENSMUSG00000092354.7	Gm20548	ENSMUSG00000092354.7	ENSMUST00000174528.7	antisense	chr5:101837458-101846410
chr5	101839916	101840307	+	BGLII	LTR	ERVK	chr5	101840154	101840156	+	ENSMUST00000174312.1,ENSMUSG00000092354.7	Gm20548	ENSMUSG00000092354.7	ENSMUST00000174312.1	antisense	chr5:101840155-101844332
chr5	102416175	102416228	+	(TG)n	Simple_repeat	Simple_repeat	chr5	102416202	102416204	+	ENSMUST00000197280.1,ENSMUSG00000106295.1	Gm42932	ENSMUSG00000106295.1	ENSMUST00000197280.1	processed_pseudogene	chr5:102416203-102416946
chr5	102768748	102768799	+	(GA)n	Simple_repeat	Simple_repeat	chr5	102768770	102768772	+	ENSMUST00000112852.7,ENSMUSG00000057315.14	Arhgap24	ENSMUSG00000057315.14	ENSMUST00000112852.7	protein_coding	chr5:102768771-102897937
chr5	103346171	103346751	-	Lx6	LINE	L1	chr5	103346593	103346595	+	ENSMUST00000197576.1,ENSMUSG00000105426.1	1700021F02Rik	ENSMUSG00000105426.1	ENSMUST00000197576.1	lincRNA	chr5:103346594-103348299
chr5	103356462	103356818	-	ORR1B1	LTR	ERVL-MaLR	chr5	103356697	103356699	-	ENSMUST00000200007.1,ENSMUSG00000104684.1	5430427N15Rik	ENSMUSG00000104684.1	ENSMUST00000200007.1	lincRNA	chr5:103354306-103356698
chr5	103602586	103602789	+	7SK	RNA	RNA	chr5	103602586	103602588	+	ENSMUST00000157849.1,ENSMUSG00000088474.1	Gm23085	ENSMUSG00000088474.1	ENSMUST00000157849.1	misc_RNA	chr5:103602587-103602879
chr5	103631211	103636499	-	MERVL-int	LTR	ERVL	chr5	103635224	103635226	+	ENSMUST00000196721.1,ENSMUSG00000105018.1	Gm43546	ENSMUSG00000105018.1	ENSMUST00000196721.1	TEC	chr5:103635225-103636167
chr5	103658237	103658405	+	U1	snRNA	snRNA	chr5	103658236	103658238	+	ENSMUST00000157496.1,ENSMUSG00000088121.1	Gm25721	ENSMUSG00000088121.1	ENSMUST00000157496.1	snRNA	chr5:103658237-103658407
chr5	103898878	103898985	+	U6	snRNA	snRNA	chr5	103898878	103898880	+	ENSMUST00000179033.1,ENSMUSG00000095133.1	Gm24897	ENSMUSG00000095133.1	ENSMUST00000179033.1	snRNA	chr5:103898879-103898985
chr5	104072321	104072363	+	(C)n	Simple_repeat	Simple_repeat	chr5	104072324	104072326	-	ENSMUST00000198340.1,ENSMUSG00000105261.1	Gm43333	ENSMUSG00000105261.1	ENSMUST00000198340.1	TEC	chr5:104070064-104072325
chr5	104246588	104246717	-	RSINE1	SINE	B4	chr5	104246701	104246703	-	ENSMUST00000196103.1,ENSMUSG00000105615.1	Gm31048	ENSMUSG00000105615.1	ENSMUST00000196103.1	lincRNA	chr5:104239313-104246702
chr5	104296977	104297497	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr5	104297187	104297189	+	ENSMUST00000177797.1,ENSMUSG00000094432.1	Gm23616	ENSMUSG00000094432.1	ENSMUST00000177797.1	miRNA	chr5:104297188-104297297
chr5	104540467	104540598	+	B1_Mur4	SINE	Alu	chr5	104540570	104540572	+	ENSMUST00000181418.1,ENSMUSG00000097392.2	D930016D06Rik	ENSMUSG00000097392.2	ENSMUST00000181418.1	lincRNA	chr5:104540571-104552074
chr5	104936650	104936757	+	U6	snRNA	snRNA	chr5	104936650	104936652	+	ENSMUST00000178720.1,ENSMUSG00000096561.1	Gm24097	ENSMUSG00000096561.1	ENSMUST00000178720.1	snRNA	chr5:104936651-104936757
chr5	105401229	105401574	+	MTD	LTR	ERVL-MaLR	chr5	105401244	105401246	+	ENSMUST00000181193.1,ENSMUSG00000097237.1	Gm26519	ENSMUSG00000097237.1	ENSMUST00000181193.1	lincRNA	chr5:105401245-105406970
chr5	105409233	105409561	+	ORR1B1	LTR	ERVL-MaLR	chr5	105409366	105409368	+	ENSMUST00000196818.1,ENSMUSG00000106438.1	Gm32051	ENSMUSG00000106438.1	ENSMUST00000196818.1	lincRNA	chr5:105409367-105413912
chr5	105558836	105558985	-	ID_B1	SINE	B4	chr5	105558857	105558859	+	ENSMUST00000153754.1,ENSMUSG00000054720.12	Lrrc8c	ENSMUSG00000054720.12	ENSMUST00000153754.1	protein_coding	chr5:105558858-105606872
chr5	105731315	105731442	+	RSINE1	SINE	B4	chr5	105731388	105731390	+	ENSMUST00000156630.7,ENSMUSG00000046079.16	Lrrc8d	ENSMUSG00000046079.16	ENSMUST00000156630.7	protein_coding	chr5:105731389-105811837
chr5	105866204	105866366	+	MTE-int	LTR	ERVL-MaLR	chr5	105866360	105866362	+	ENSMUST00000200605.1,ENSMUSG00000105074.1	Gm43818	ENSMUSG00000105074.1	ENSMUST00000200605.1	processed_pseudogene	chr5:105866361-105866826
chr5	105904914	105905093	-	B2_Mm2	SINE	B2	chr5	105904913	105904915	+	ENSMUST00000147683.1,ENSMUSG00000029290.12	Zfp326	ENSMUSG00000029290.12	ENSMUST00000147683.1	protein_coding	chr5:105904914-105907987
chr5	106072326	106072433	-	U6	snRNA	snRNA	chr5	106072432	106072434	-	ENSMUST00000180111.1,ENSMUSG00000095052.1	Gm25672	ENSMUSG00000095052.1	ENSMUST00000180111.1	snRNA	chr5:106072327-106072433
chr5	106355362	106355836	+	RLTR30D2_MM	LTR	ERV1	chr5	106355683	106355685	-	ENSMUST00000197478.1,ENSMUSG00000104604.1	Gm42915	ENSMUSG00000104604.1	ENSMUST00000197478.1	processed_pseudogene	chr5:106355362-106355684
chr5	106609039	106609138	+	B1_Mus1	SINE	Alu	chr5	106609097	106609099	+	ENSMUST00000167618.1,ENSMUSG00000091096.1	Gm17304	ENSMUSG00000091096.1	ENSMUST00000167618.1	protein_coding	chr5:106609098-106609201
chr5	106624229	106624589	-	MLT1A0-int	LTR	ERVL-MaLR	chr5	106624389	106624391	-	ENSMUST00000112694.5,ENSMUSG00000049606.16	Zfp644	ENSMUSG00000049606.16	ENSMUST00000112694.5	protein_coding	chr5:106617073-106624390
chr5	106667510	106667815	-	MER2	DNA	TcMar-Tigger	chr5	106667616	106667618	-	ENSMUST00000122980.7,ENSMUSG00000049606.16	Zfp644	ENSMUSG00000049606.16	ENSMUST00000122980.7	protein_coding	chr5:106638069-106667617
chr5	106738763	106738909	-	MTE2a	LTR	ERVL-MaLR	chr5	106738763	106738765	-	ENSMUST00000197334.1,ENSMUSG00000106301.1	Gm8365	ENSMUSG00000106301.1	ENSMUST00000197334.1	processed_pseudogene	chr5:106738117-106738764
chr5	106906494	106906740	+	L1_Mus1	LINE	L1	chr5	106906728	106906730	+	ENSMUST00000137795.2,ENSMUSG00000067047.4	Olfr719-ps	ENSMUSG00000067047.4	ENSMUST00000137795.2	unprocessed_pseudogene	chr5:106906729-106906980
chr5	107256163	107256856	+	RLTR10-int	LTR	ERVK	chr5	107256503	107256505	-	ENSMUST00000197184.1,ENSMUSG00000106671.1	Gm42900	ENSMUSG00000106671.1	ENSMUST00000197184.1	TEC	chr5:107254338-107256504
chr5	107302942	107303045	+	U6	snRNA	snRNA	chr5	107302945	107302947	+	ENSMUST00000157804.1,ENSMUSG00000088429.1	Gm22557	ENSMUSG00000088429.1	ENSMUST00000157804.1	snRNA	chr5:107302946-107303047
chr5	107401318	107401438	+	5S	rRNA	rRNA	chr5	107401318	107401320	+	ENSMUST00000082620.1,ENSMUSG00000064554.1	n-R5s173	ENSMUSG00000064554.1	ENSMUST00000082620.1	rRNA	chr5:107401319-107401437
chr5	107403444	107403575	+	GC_rich	Low_complexity	Low_complexity	chr5	107403479	107403481	-	ENSMUST00000199508.1,ENSMUSG00000106396.1	Gm42902	ENSMUSG00000106396.1	ENSMUST00000199508.1	antisense	chr5:107392731-107403480
chr5	107403444	107403575	+	GC_rich	Low_complexity	Low_complexity	chr5	107403495	107403497	+	ENSMUST00000049146.11,ENSMUSG00000033805.12	Ephx4	ENSMUSG00000033805.12	ENSMUST00000049146.11	protein_coding	chr5:107403496-107430035
chr5	107597615	107597728	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	107597638	107597640	-	ENSMUST00000078021.12,ENSMUSG00000029276.13	Glmn	ENSMUSG00000029276.13	ENSMUST00000078021.12	protein_coding	chr5:107548967-107597639
chr5	107597615	107597728	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	107597638	107597640	-	ENSMUST00000143113.1,ENSMUSG00000029276.13	Glmn	ENSMUSG00000029276.13	ENSMUST00000143113.1	protein_coding	chr5:107575287-107597639
chr5	107597615	107597728	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	107597695	107597697	+	ENSMUST00000112651.7,ENSMUSG00000033773.14	Rpap2	ENSMUSG00000033773.14	ENSMUST00000112651.7	protein_coding	chr5:107597696-107661838
chr5	107597615	107597728	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	107597716	107597718	+	ENSMUST00000112654.7,ENSMUSG00000033773.14	Rpap2	ENSMUSG00000033773.14	ENSMUST00000112654.7	protein_coding	chr5:107597717-107642922
chr5	107597615	107597728	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr5	107597720	107597722	+	ENSMUST00000147284.7,ENSMUSG00000033773.14	Rpap2	ENSMUSG00000033773.14	ENSMUST00000147284.7	protein_coding	chr5:107597721-107601969
chr5	107844212	107844396	+	B2_Mm2	SINE	B2	chr5	107844389	107844391	+	ENSMUST00000117837.1,ENSMUSG00000083609.1	Gm16007	ENSMUSG00000083609.1	ENSMUST00000117837.1	processed_pseudogene	chr5:107844390-107844675
chr5	107906523	107906655	-	B1_Mus2	SINE	Alu	chr5	107906621	107906623	+	ENSMUST00000151767.1,ENSMUSG00000058558.12	Rpl5	ENSMUSG00000058558.12	ENSMUST00000151767.1	protein_coding	chr5:107906622-107908055
chr5	107972941	107973109	+	ID_B1	SINE	B4	chr5	107972997	107972999	-	ENSMUST00000153172.1,ENSMUSG00000029270.10	Fam69a	ENSMUSG00000029270.10	ENSMUST00000153172.1	protein_coding	chr5:107914398-107972998
chr5	107987047	107987105	+	C-rich	Low_complexity	Low_complexity	chr5	107987084	107987086	-	ENSMUST00000031198.10,ENSMUSG00000029270.10	Fam69a	ENSMUSG00000029270.10	ENSMUST00000031198.10	protein_coding	chr5:107908053-107987085
chr5	108076618	108078637	+	ORR1B1-int	LTR	ERVL-MaLR	chr5	108078164	108078166	+	ENSMUST00000198662.4,ENSMUSG00000029267.17	Mtf2	ENSMUSG00000029267.17	ENSMUST00000198662.4	protein_coding	chr5:108078165-108107470
chr5	108276872	108276957	-	Tigger7	DNA	TcMar-Tigger	chr5	108276919	108276921	+	ENSMUST00000154862.1,ENSMUSG00000029265.4	Dr1	ENSMUSG00000029265.4	ENSMUST00000154862.1	protein_coding	chr5:108276920-108278615
chr5	108367757	108367786	+	GC_rich	Low_complexity	Low_complexity	chr5	108367768	108367770	+	ENSMUST00000197854.1,ENSMUSG00000072769.6	Gm10419	ENSMUSG00000072769.6	ENSMUST00000197854.1	lincRNA	chr5:108367769-108369679
chr5	108552997	108553394	+	RLTR35B_MM	LTR	ERVL	chr5	108553353	108553355	-	ENSMUST00000196046.1,ENSMUSG00000105590.1	Gm43364	ENSMUSG00000105590.1	ENSMUST00000196046.1	TEC	chr5:108550081-108553354
chr5	108577138	108577251	+	B1_Mur2	SINE	Alu	chr5	108577241	108577243	-	ENSMUST00000199010.1,ENSMUSG00000062234.14	Gak	ENSMUSG00000062234.14	ENSMUST00000199010.1	protein_coding	chr5:108571975-108577242
chr5	108600599	108600684	+	B1_Mm	SINE	Alu	chr5	108600625	108600627	-	ENSMUST00000196522.1,ENSMUSG00000105084.1	Gm43365	ENSMUSG00000105084.1	ENSMUST00000196522.1	TEC	chr5:108598521-108600626
chr5	108641538	108641687	-	RSINE1	SINE	B4	chr5	108641679	108641681	+	ENSMUST00000200485.1,ENSMUSG00000013495.15	Tmem175	ENSMUSG00000013495.15	ENSMUST00000200485.1	protein_coding	chr5:108641680-108643195
chr5	108694263	108694301	+	GC_rich	Low_complexity	Low_complexity	chr5	108694267	108694269	+	ENSMUST00000112560.7,ENSMUSG00000008090.14	Fgfrl1	ENSMUSG00000008090.14	ENSMUST00000112560.7	protein_coding	chr5:108694268-108706924
chr5	108750344	108751098	-	Lx	LINE	L1	chr5	108750954	108750956	-	ENSMUST00000196652.4,ENSMUSG00000055385.12	Rnf212	ENSMUSG00000055385.12	ENSMUST00000196652.4	protein_coding	chr5:108729308-108750955
chr5	108750344	108751098	-	Lx	LINE	L1	chr5	108750917	108750919	-	ENSMUST00000197384.4,ENSMUSG00000055385.12	Rnf212	ENSMUSG00000055385.12	ENSMUST00000197384.4	protein_coding	chr5:108729389-108750918
chr5	108763745	108763869	-	RLTR51A_Mm	LTR	ERVK?	chr5	108763841	108763843	+	ENSMUST00000189659.1,ENSMUSG00000101762.1	1700047L14Rik	ENSMUSG00000101762.1	ENSMUST00000189659.1	antisense	chr5:108763842-108768914
chr5	108849753	108849889	+	RLTR9A3B	LTR	ERVK	chr5	108849780	108849782	+	ENSMUST00000176157.1,ENSMUSG00000093479.1	Gm20629	ENSMUSG00000093479.1	ENSMUST00000176157.1	antisense	chr5:108849781-108949255
chr5	108858864	108865446	-	L1Md_A	LINE	L1	chr5	108864832	108864834	+	ENSMUST00000194341.1,ENSMUSG00000103580.1	Gm10417	ENSMUSG00000103580.1	ENSMUST00000194341.1	TEC	chr5:108864833-108868354
chr5	109235873	109236873	+	Lx	LINE	L1	chr5	109236543	109236545	+	ENSMUST00000176697.1,ENSMUSG00000093543.1	Gm8473	ENSMUSG00000093543.1	ENSMUST00000176697.1	processed_pseudogene	chr5:109236544-109238428
chr5	109834022	109834217	-	MurSatRep1	Unknown	Unknown	chr5	109834144	109834146	-	ENSMUST00000197379.1,ENSMUSG00000105044.1	Gm10416	ENSMUSG00000105044.1	ENSMUST00000197379.1	TEC	chr5:109833501-109834145
chr5	109834109	109834247	-	MMSAT4	Satellite	Satellite	chr5	109834144	109834146	-	ENSMUST00000197379.1,ENSMUSG00000105044.1	Gm10416	ENSMUSG00000105044.1	ENSMUST00000197379.1	TEC	chr5:109833501-109834145
chr5	109940078	109941740	+	MurSatRep1	Unknown	Unknown	chr5	109940425	109940427	+	ENSMUST00000170826.1,ENSMUSG00000090015.8	Gm15446	ENSMUSG00000090015.8	ENSMUST00000170826.1	protein_coding	chr5:109940426-109940804
chr5	110006366	110006504	+	MurSatRep1	Unknown	Unknown	chr5	110006395	110006397	+	ENSMUST00000112536.7,ENSMUSG00000066613.14	Zfp932	ENSMUSG00000066613.14	ENSMUST00000112536.7	protein_coding	chr5:110006396-110010404
chr5	110006602	110008270	+	MurSatRep1	Unknown	Unknown	chr5	110006615	110006617	+	ENSMUST00000187241.1,ENSMUSG00000066613.14	Zfp932	ENSMUSG00000066613.14	ENSMUST00000187241.1	protein_coding	chr5:110006616-110010018
chr5	110046196	110046499	-	MurSatRep1	Unknown	Unknown	chr5	110046485	110046487	-	ENSMUST00000167969.1,ENSMUSG00000090963.2	Gm17655	ENSMUSG00000090963.2	ENSMUST00000167969.1	protein_coding	chr5:110046232-110046486
chr5	110046369	110046596	-	MMSAT4	Satellite	Satellite	chr5	110046485	110046487	-	ENSMUST00000167969.1,ENSMUSG00000090963.2	Gm17655	ENSMUSG00000090963.2	ENSMUST00000167969.1	protein_coding	chr5:110046232-110046486
chr5	110072434	110072632	+	B2_Mm2	SINE	B2	chr5	110072512	110072514	-	ENSMUST00000210275.1,ENSMUSG00000090963.2	Gm17655	ENSMUSG00000090963.2	ENSMUST00000210275.1	protein_coding	chr5:110046139-110072513
chr5	110079435	110081452	-	MurSatRep1	Unknown	Unknown	chr5	110080887	110080889	-	ENSMUST00000209865.1,ENSMUSG00000109771.1	Gm35315	ENSMUSG00000109771.1	ENSMUST00000209865.1	protein_coding	chr5:110076136-110080888
chr5	110099907	110099972	+	RMER19A	LTR	ERVK	chr5	110099968	110099970	+	ENSMUST00000086687.9,ENSMUSG00000064247.14	Plcxd1	ENSMUSG00000064247.14	ENSMUST00000086687.9	protein_coding	chr5:110099969-110103815
chr5	110154118	110154184	+	ID_B1	SINE	B4	chr5	110154121	110154123	-	ENSMUST00000200403.1,ENSMUSG00000105541.1	Gm43136	ENSMUSG00000105541.1	ENSMUST00000200403.1	antisense	chr5:110153487-110154122
chr5	110162349	110162589	-	B4	SINE	B4	chr5	110162441	110162443	-	ENSMUST00000152014.1,ENSMUSG00000086247.7	Gm15787	ENSMUSG00000086247.7	ENSMUST00000152014.1	processed_transcript	chr5:110154400-110162442
chr5	110169744	110169930	-	ORR1A2	LTR	ERVL-MaLR	chr5	110169895	110169897	-	ENSMUST00000156579.1,ENSMUSG00000086247.7	Gm15787	ENSMUSG00000086247.7	ENSMUST00000156579.1	processed_transcript	chr5:110168257-110169896
chr5	110231168	110231274	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	110231200	110231202	-	ENSMUST00000198052.1,ENSMUSG00000104970.1	Gm43137	ENSMUSG00000104970.1	ENSMUST00000198052.1	antisense	chr5:110230608-110231201
chr5	110262016	110262362	+	ORR1A0	LTR	ERVL-MaLR	chr5	110262160	110262162	+	ENSMUST00000140087.1,ENSMUSG00000087439.1	Gm15788	ENSMUSG00000087439.1	ENSMUST00000140087.1	antisense	chr5:110262161-110277267
chr5	110262016	110262362	+	ORR1A0	LTR	ERVL-MaLR	chr5	110262168	110262170	+	ENSMUST00000130123.1,ENSMUSG00000087439.1	Gm15788	ENSMUSG00000087439.1	ENSMUST00000130123.1	antisense	chr5:110262169-110276957
chr5	110316984	110317094	+	PB1D10	SINE	Alu	chr5	110317043	110317045	+	ENSMUST00000182442.1,ENSMUSG00000007080.14	Pole	ENSMUSG00000007080.14	ENSMUST00000182442.1	protein_coding	chr5:110317044-110319177
chr5	110327944	110328070	+	B1_Mur3	SINE	Alu	chr5	110328031	110328033	+	ENSMUST00000157097.1,ENSMUSG00000087722.1	Gm26277	ENSMUSG00000087722.1	ENSMUST00000157097.1	snoRNA	chr5:110328032-110328183
chr5	110333154	110333303	+	B1_Mus1	SINE	Alu	chr5	110333202	110333204	-	ENSMUST00000137099.1,ENSMUSG00000085606.1	Gm15792	ENSMUSG00000085606.1	ENSMUST00000137099.1	antisense	chr5:110331206-110333203
chr5	110661313	110661711	-	L1_Mur3	LINE	L1	chr5	110661391	110661393	+	ENSMUST00000196771.1,ENSMUSG00000105161.1	Gm42595	ENSMUSG00000105161.1	ENSMUST00000196771.1	lincRNA	chr5:110661392-110662998
chr5	110677123	110677230	-	U6	snRNA	snRNA	chr5	110677229	110677231	-	ENSMUST00000177596.1,ENSMUSG00000095178.1	Gm22716	ENSMUSG00000095178.1	ENSMUST00000177596.1	snRNA	chr5:110677124-110677230
chr5	110677227	110677375	-	B2_Mm2	SINE	B2	chr5	110677229	110677231	-	ENSMUST00000177596.1,ENSMUSG00000095178.1	Gm22716	ENSMUSG00000095178.1	ENSMUST00000177596.1	snRNA	chr5:110677124-110677230
chr5	110757084	110757191	+	U6	snRNA	snRNA	chr5	110757084	110757086	+	ENSMUST00000178031.1,ENSMUSG00000096238.1	Gm22583	ENSMUSG00000096238.1	ENSMUST00000178031.1	snRNA	chr5:110757085-110757191
chr5	110879760	110879816	+	GC_rich	Low_complexity	Low_complexity	chr5	110879802	110879804	+	ENSMUST00000040111.9,ENSMUSG00000033209.17	Ttc28	ENSMUSG00000033209.17	ENSMUST00000040111.9	protein_coding	chr5:110879803-111289779
chr5	110879760	110879816	+	GC_rich	Low_complexity	Low_complexity	chr5	110879802	110879804	+	ENSMUST00000156290.8,ENSMUSG00000033209.17	Ttc28	ENSMUSG00000033209.17	ENSMUST00000156290.8	protein_coding	chr5:110879803-111289780
chr5	111197110	111197517	-	L1MA8	LINE	L1	chr5	111197139	111197141	+	ENSMUST00000197532.1,ENSMUSG00000105027.1	Gm43676	ENSMUSG00000105027.1	ENSMUST00000197532.1	TEC	chr5:111197140-111197679
chr5	111417334	111417370	+	GC_rich	Low_complexity	Low_complexity	chr5	111417361	111417363	+	ENSMUST00000138784.1,ENSMUSG00000070576.4	Mn1	ENSMUSG00000070576.4	ENSMUST00000138784.1	protein_coding	chr5:111417362-111418073
chr5	112229295	112229402	+	MER5A	DNA	hAT-Charlie	chr5	112229394	112229396	-	ENSMUST00000182953.7,ENSMUSG00000097767.8	Miat	ENSMUSG00000097767.8	ENSMUST00000182953.7	lincRNA	chr5:112213228-112229395
chr5	112582614	112582711	-	PB1D9	SINE	Alu	chr5	112582644	112582646	+	ENSMUST00000183300.1,ENSMUSG00000098027.1	Gm27004	ENSMUSG00000098027.1	ENSMUST00000183300.1	lincRNA	chr5:112582645-112583371
chr5	112649146	112649443	+	L1_Mur3	LINE	L1	chr5	112649366	112649368	+	ENSMUST00000198371.1,ENSMUSG00000105152.1	Gm42864	ENSMUSG00000105152.1	ENSMUST00000198371.1	lincRNA	chr5:112649367-112652112
chr5	112924333	112924473	+	B2_Mm2	SINE	B2	chr5	112924374	112924376	-	ENSMUST00000199337.1,ENSMUSG00000042249.11	Grk3	ENSMUSG00000042249.11	ENSMUST00000199337.1	protein_coding	chr5:112916110-112924375
chr5	112925570	112925826	+	B4A	SINE	B4	chr5	112925797	112925799	-	ENSMUST00000195928.1,ENSMUSG00000042249.11	Grk3	ENSMUSG00000042249.11	ENSMUST00000195928.1	protein_coding	chr5:112920062-112925798
chr5	113044143	113044252	+	U6	snRNA	snRNA	chr5	113044143	113044145	+	ENSMUST00000083439.1,ENSMUSG00000065373.1	Gm22740	ENSMUSG00000065373.1	ENSMUST00000083439.1	snRNA	chr5:113044144-113044252
chr5	113070062	113070498	+	MTC	LTR	ERVL-MaLR	chr5	113070116	113070118	-	ENSMUST00000112336.7,ENSMUSG00000042240.14	Crybb2	ENSMUSG00000042240.14	ENSMUST00000112336.7	protein_coding	chr5:113058258-113070117
chr5	113166049	113166280	+	MLT1A0	LTR	ERVL-MaLR	chr5	113166233	113166235	-	ENSMUST00000196549.1,ENSMUSG00000106206.1	Gm43094	ENSMUSG00000106206.1	ENSMUST00000196549.1	TEC	chr5:113165314-113166234
chr5	113221158	113221246	+	C-rich	Low_complexity	Low_complexity	chr5	113221235	113221237	-	ENSMUST00000211733.1,ENSMUSG00000051339.10	2900026A02Rik	ENSMUSG00000051339.10	ENSMUST00000211733.1	protein_coding	chr5:113086323-113221236
chr5	113321270	113321746	+	RLTR30B_MM	LTR	ERV1	chr5	113321652	113321654	-	ENSMUST00000199950.1,ENSMUSG00000104705.1	4930405N21Rik	ENSMUSG00000104705.1	ENSMUST00000199950.1	TEC	chr5:113320454-113321653
chr5	113549984	113550060	+	(CA)n	Simple_repeat	Simple_repeat	chr5	113549984	113549986	+	ENSMUST00000180565.1,ENSMUSG00000063430.9	Wscd2	ENSMUSG00000063430.9	ENSMUST00000180565.1	protein_coding	chr5:113549985-113556509
chr5	113772494	113772545	+	A-rich	Low_complexity	Low_complexity	chr5	113772509	113772511	-	ENSMUST00000019118.7,ENSMUSG00000018974.7	Sart3	ENSMUSG00000018974.7	ENSMUST00000019118.7	protein_coding	chr5:113742446-113772510
chr5	113860128	113860249	+	B1_Mm	SINE	Alu	chr5	113860160	113860162	+	ENSMUST00000198299.1,ENSMUSG00000106623.1	Gm43335	ENSMUSG00000106623.1	ENSMUST00000198299.1	TEC	chr5:113860161-113863436
chr5	113904810	113905671	+	L1MB8	LINE	L1	chr5	113904897	113904899	-	ENSMUST00000200487.1,ENSMUSG00000105071.1	Gm43336	ENSMUSG00000105071.1	ENSMUST00000200487.1	TEC	chr5:113900395-113904898
chr5	113908699	113908781	+	GC_rich	Low_complexity	Low_complexity	chr5	113908704	113908706	-	ENSMUST00000164980.7,ENSMUSG00000004530.12	Coro1c	ENSMUSG00000004530.12	ENSMUST00000164980.7	protein_coding	chr5:113842436-113908705
chr5	113908699	113908781	+	GC_rich	Low_complexity	Low_complexity	chr5	113908757	113908759	-	ENSMUST00000004646.12,ENSMUSG00000004530.12	Coro1c	ENSMUSG00000004530.12	ENSMUST00000004646.12	protein_coding	chr5:113842436-113908758
chr5	113928729	113928837	-	U6	snRNA	snRNA	chr5	113928803	113928805	-	ENSMUST00000083386.1,ENSMUSG00000065320.1	Gm22056	ENSMUSG00000065320.1	ENSMUST00000083386.1	snRNA	chr5:113928724-113928804
chr5	113993732	113993787	+	GC_rich	Low_complexity	Low_complexity	chr5	113993778	113993780	-	ENSMUST00000112298.9,ENSMUSG00000042121.16	Ssh1	ENSMUSG00000042121.16	ENSMUST00000112298.9	protein_coding	chr5:113939765-113993779
chr5	113993732	113993787	+	GC_rich	Low_complexity	Low_complexity	chr5	113993766	113993768	-	ENSMUST00000162322.1,ENSMUSG00000042121.16	Ssh1	ENSMUSG00000042121.16	ENSMUST00000162322.1	protein_coding	chr5:113966604-113993767
chr5	113993787	113993855	+	C-rich	Low_complexity	Low_complexity	chr5	113993826	113993828	-	ENSMUST00000159510.1,ENSMUSG00000042121.16	Ssh1	ENSMUSG00000042121.16	ENSMUST00000159510.1	protein_coding	chr5:113961393-113993827
chr5	114017036	114017185	+	B1_Mm	SINE	Alu	chr5	114017091	114017093	+	ENSMUST00000162214.1,ENSMUSG00000042096.15	Dao	ENSMUSG00000042096.15	ENSMUST00000162214.1	protein_coding	chr5:114017092-114020004
chr5	114065083	114065277	+	B2_Mm2	SINE	B2	chr5	114065217	114065219	-	ENSMUST00000134790.7,ENSMUSG00000042078.14	Svop	ENSMUSG00000042078.14	ENSMUST00000134790.7	protein_coding	chr5:114028125-114065218
chr5	114108596	114108962	+	ORR1B1	LTR	ERVL-MaLR	chr5	114108925	114108927	+	ENSMUST00000197629.1,ENSMUSG00000106484.1	Gm17833	ENSMUSG00000106484.1	ENSMUST00000197629.1	processed_pseudogene	chr5:114108926-114109990
chr5	114115707	114115846	+	B1_Mus1	SINE	Alu	chr5	114115828	114115830	+	ENSMUST00000197936.1,ENSMUSG00000105514.1	Gm42913	ENSMUSG00000105514.1	ENSMUST00000197936.1	TEC	chr5:114115829-114117681
chr5	114237925	114237949	+	(T)n	Simple_repeat	Simple_repeat	chr5	114237924	114237926	-	ENSMUST00000119639.1,ENSMUSG00000084243.1	Gm13784	ENSMUSG00000084243.1	ENSMUST00000119639.1	processed_pseudogene	chr5:114237176-114237925
chr5	114636231	114636264	+	(TCCA)n	Simple_repeat	Simple_repeat	chr5	114636260	114636262	-	ENSMUST00000133019.7,ENSMUSG00000014158.12	Trpv4	ENSMUSG00000014158.12	ENSMUST00000133019.7	protein_coding	chr5:114622157-114636261
chr5	114658408	114658451	+	GC_rich	Low_complexity	Low_complexity	chr5	114658420	114658422	-	ENSMUST00000071968.8,ENSMUSG00000014158.12	Trpv4	ENSMUSG00000014158.12	ENSMUST00000071968.8	protein_coding	chr5:114622152-114658421
chr5	114658408	114658451	+	GC_rich	Low_complexity	Low_complexity	chr5	114658417	114658419	-	ENSMUST00000112225.7,ENSMUSG00000014158.12	Trpv4	ENSMUSG00000014158.12	ENSMUST00000112225.7	protein_coding	chr5:114622154-114658418
chr5	114716099	114716294	-	B2_Mm2	SINE	B2	chr5	114716119	114716121	-	ENSMUST00000202276.1,ENSMUSG00000107340.1	Gm42789	ENSMUSG00000107340.1	ENSMUST00000202276.1	antisense	chr5:114715554-114716120
chr5	114774967	114775069	+	GC_rich	Low_complexity	Low_complexity	chr5	114774982	114774984	-	ENSMUST00000173208.1,ENSMUSG00000092183.1	4930515G01Rik	ENSMUSG00000092183.1	ENSMUST00000173208.1	antisense	chr5:114773737-114774983
chr5	114775374	114775608	-	MIRb	SINE	MIR	chr5	114775516	114775518	-	ENSMUST00000131016.1,ENSMUSG00000041890.17	Git2	ENSMUSG00000041890.17	ENSMUST00000131016.1	protein_coding	chr5:114764351-114775517
chr5	114851846	114851962	+	B1_Mus2	SINE	Alu	chr5	114851947	114851949	+	ENSMUST00000184281.1,ENSMUSG00000098343.1	Mir6240	ENSMUSG00000098343.1	ENSMUST00000184281.1	miRNA	chr5:114851948-114852064
chr5	114904190	114904607	+	Lx8	LINE	L1	chr5	114904429	114904431	+	ENSMUST00000129707.1,ENSMUSG00000029561.17	Oasl2	ENSMUSG00000029561.17	ENSMUST00000129707.1	protein_coding	chr5:114904430-114906723
chr5	114968805	114968943	+	CT-rich	Low_complexity	Low_complexity	chr5	114968822	114968824	+	ENSMUST00000138108.1,ENSMUSG00000086140.1	Hnf1aos2	ENSMUSG00000086140.1	ENSMUST00000138108.1	antisense	chr5:114968823-114971400
chr5	114975394	114975506	-	PB1D10	SINE	Alu	chr5	114975455	114975457	+	ENSMUST00000202592.1,ENSMUSG00000106838.1	1810017P11Rik	ENSMUSG00000106838.1	ENSMUST00000202592.1	TEC	chr5:114975456-114976013
chr5	115039707	115039888	+	B2_Mm2	SINE	B2	chr5	115039769	115039771	+	ENSMUST00000201944.1,ENSMUSG00000107054.1	C730045M19Rik	ENSMUSG00000107054.1	ENSMUST00000201944.1	TEC	chr5:115039770-115041084
chr5	115074348	115074383	+	(TTTTC)n	Simple_repeat	Simple_repeat	chr5	115074366	115074368	+	ENSMUST00000201970.1,ENSMUSG00000029550.11	Sppl3	ENSMUSG00000029550.11	ENSMUST00000201970.1	protein_coding	chr5:115074367-115076872
chr5	115094567	115094779	-	RLTR12A	LTR	ERVK	chr5	115094756	115094758	+	ENSMUST00000128678.1,ENSMUSG00000029550.11	Sppl3	ENSMUSG00000029550.11	ENSMUST00000128678.1	protein_coding	chr5:115094757-115098256
chr5	115107910	115108056	+	B1_Mus1	SINE	Alu	chr5	115107961	115107963	-	ENSMUST00000201888.1,ENSMUSG00000072692.7	Rpl37rt	ENSMUSG00000072692.7	ENSMUST00000201888.1	transcribed_processed_pseudogene	chr5:115103191-115107962
chr5	115158156	115158184	+	(TCC)n	Simple_repeat	Simple_repeat	chr5	115158178	115158180	-	ENSMUST00000112121.5,ENSMUSG00000048578.11	Mlec	ENSMUSG00000048578.11	ENSMUST00000112121.5	protein_coding	chr5:115142981-115158179
chr5	115186109	115186130	+	GC_rich	Low_complexity	Low_complexity	chr5	115186120	115186122	-	ENSMUST00000112112.1,ENSMUSG00000029544.16	Cabp1	ENSMUSG00000029544.16	ENSMUST00000112112.1	protein_coding	chr5:115168946-115186121
chr5	115194364	115194393	+	GC_rich	Low_complexity	Low_complexity	chr5	115194380	115194382	-	ENSMUST00000112113.7,ENSMUSG00000029544.16	Cabp1	ENSMUSG00000029544.16	ENSMUST00000112113.7	protein_coding	chr5:115168689-115194381
chr5	115257825	115257998	+	B2_Mm1a	SINE	B2	chr5	115257891	115257893	-	ENSMUST00000202855.1,ENSMUSG00000041740.16	Rnf10	ENSMUSG00000041740.16	ENSMUST00000202855.1	protein_coding	chr5:115256221-115257892
chr5	115272274	115272309	+	GC_rich	Low_complexity	Low_complexity	chr5	115272300	115272302	-	ENSMUST00000139853.1,ENSMUSG00000041740.16	Rnf10	ENSMUSG00000041740.16	ENSMUST00000139853.1	protein_coding	chr5:115241779-115272301
chr5	115300971	115301010	+	GC_rich	Low_complexity	Low_complexity	chr5	115300998	115301000	-	ENSMUST00000009157.3,ENSMUSG00000009013.5	Dynll1	ENSMUSG00000009013.5	ENSMUST00000009157.3	protein_coding	chr5:115297110-115300999
chr5	115422440	115422516	-	BC1_Mm	scRNA	scRNA	chr5	115422499	115422501	-	ENSMUST00000201293.1,ENSMUSG00000106887.1	A930005G22Rik	ENSMUSG00000106887.1	ENSMUST00000201293.1	TEC	chr5:115420597-115422500
chr5	115429691	115429736	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	115429698	115429700	+	ENSMUST00000151444.7,ENSMUSG00000054256.11	Msi1	ENSMUSG00000054256.11	ENSMUST00000151444.7	protein_coding	chr5:115429699-115448987
chr5	115479928	115480087	+	B2_Mm2	SINE	B2	chr5	115479937	115479939	-	ENSMUST00000154729.1,ENSMUSG00000029524.16	Sirt4	ENSMUSG00000029524.16	ENSMUST00000154729.1	protein_coding	chr5:115478013-115479938
chr5	115489458	115489602	+	U4	snRNA	snRNA	chr5	115489458	115489460	+	ENSMUST00000101833.2,ENSMUSG00000096243.1	Gm24265	ENSMUSG00000096243.1	ENSMUST00000101833.2	snRNA	chr5:115489459-115489599
chr5	115490253	115490397	+	U4	snRNA	snRNA	chr5	115490253	115490255	+	ENSMUST00000177864.1,ENSMUSG00000094377.1	Gm24407	ENSMUSG00000094377.1	ENSMUST00000177864.1	snRNA	chr5:115490254-115490394
chr5	115506694	115506742	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	115506710	115506712	+	ENSMUST00000152156.7,ENSMUSG00000029528.18	Pxn	ENSMUSG00000029528.18	ENSMUST00000152156.7	protein_coding	chr5:115506711-115555982
chr5	115520218	115520318	-	L3	LINE	CR1	chr5	115520304	115520306	+	ENSMUST00000125007.7,ENSMUSG00000029528.18	Pxn	ENSMUSG00000029528.18	ENSMUST00000125007.7	protein_coding	chr5:115520305-115555982
chr5	115605623	115605764	-	ID_B1	SINE	B4	chr5	115605695	115605697	+	ENSMUST00000094427.6,ENSMUSG00000041638.18	Gcn1l1	ENSMUSG00000041638.18	ENSMUST00000094427.6	protein_coding	chr5:115605696-115622648
chr5	115631835	115631942	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	115631907	115631909	+	ENSMUST00000031492.14,ENSMUSG00000029518.15	Rab35	ENSMUSG00000029518.15	ENSMUST00000031492.14	protein_coding	chr5:115631908-115647736
chr5	115632080	115632146	+	(CCCG)n	Simple_repeat	Simple_repeat	chr5	115632140	115632142	+	ENSMUST00000138885.1,ENSMUSG00000029518.15	Rab35	ENSMUSG00000029518.15	ENSMUST00000138885.1	protein_coding	chr5:115632141-115646119
chr5	115870133	115870160	+	(T)n	Simple_repeat	Simple_repeat	chr5	115870143	115870145	+	ENSMUST00000201056.1,ENSMUSG00000106869.1	Gm42473	ENSMUSG00000106869.1	ENSMUST00000201056.1	TEC	chr5:115870144-115872434
chr5	115951048	115951156	-	B3A	SINE	B2	chr5	115951089	115951091	+	ENSMUST00000136780.1,ENSMUSG00000029516.19	Cit	ENSMUSG00000029516.19	ENSMUST00000136780.1	protein_coding	chr5:115951090-115952649
chr5	116031954	116032373	+	MTC	LTR	ERVL-MaLR	chr5	116032312	116032314	-	ENSMUST00000164753.1,ENSMUSG00000090728.1	Gm17420	ENSMUSG00000090728.1	ENSMUST00000164753.1	pseudogene	chr5:116032146-116032313
chr5	116381626	116381866	+	MLT1B	LTR	ERVL-MaLR	chr5	116381634	116381636	-	ENSMUST00000200749.1,ENSMUSG00000106766.1	4933424N20Rik	ENSMUSG00000106766.1	ENSMUST00000200749.1	TEC	chr5:116380173-116381635
chr5	116392784	116392909	+	MER126	DNA	DNA	chr5	116392799	116392801	-	ENSMUST00000153818.1,ENSMUSG00000086945.1	4930562A09Rik	ENSMUSG00000086945.1	ENSMUST00000153818.1	lincRNA	chr5:116390678-116392800
chr5	116438612	116439029	+	RLTR11A	LTR	ERVK	chr5	116438719	116438721	+	ENSMUST00000133548.4,ENSMUSG00000086219.7	Srrm4os	ENSMUSG00000086219.7	ENSMUST00000133548.4	antisense	chr5:116438720-116462098
chr5	116438612	116439029	+	RLTR11A	LTR	ERVK	chr5	116438719	116438721	+	ENSMUST00000126959.4,ENSMUSG00000086219.7	Srrm4os	ENSMUSG00000086219.7	ENSMUST00000126959.4	antisense	chr5:116438720-116465487
chr5	116453899	116453931	+	(TTTTG)n	Simple_repeat	Simple_repeat	chr5	116453912	116453914	-	ENSMUST00000150127.1,ENSMUSG00000063919.11	Srrm4	ENSMUSG00000063919.11	ENSMUST00000150127.1	protein_coding	chr5:116439275-116453913
chr5	116457426	116457561	+	CT-rich	Low_complexity	Low_complexity	chr5	116457483	116457485	-	ENSMUST00000201273.1,ENSMUSG00000107021.1	Gm42853	ENSMUSG00000107021.1	ENSMUST00000201273.1	TEC	chr5:116456098-116457484
chr5	117113406	117113598	+	B3A	SINE	B2	chr5	117113550	117113552	-	ENSMUST00000200684.3,ENSMUSG00000066900.11	Suds3	ENSMUSG00000066900.11	ENSMUST00000200684.3	protein_coding	chr5:117105288-117113551
chr5	117126265	117126460	-	Lx8	LINE	L1	chr5	117126300	117126302	+	ENSMUST00000125738.7,ENSMUSG00000061288.13	Taok3	ENSMUSG00000061288.13	ENSMUST00000125738.7	protein_coding	chr5:117126301-117203283
chr5	117130261	117130464	+	B4A	SINE	B4	chr5	117130322	117130324	+	ENSMUST00000202206.1,ENSMUSG00000107225.1	Gm43637	ENSMUSG00000107225.1	ENSMUST00000202206.1	TEC	chr5:117130323-117133248
chr5	117196555	117196672	+	5S	rRNA	rRNA	chr5	117196554	117196556	+	ENSMUST00000122638.1,ENSMUSG00000084587.1	n-R5s174	ENSMUSG00000084587.1	ENSMUST00000122638.1	rRNA	chr5:117196555-117196675
chr5	117295887	117300957	-	MMERVK10C-int	LTR	ERVK	chr5	117299888	117299890	+	ENSMUST00000201584.1,ENSMUSG00000106714.1	Gm42546	ENSMUSG00000106714.1	ENSMUST00000201584.1	TEC	chr5:117299889-117302480
chr5	117315569	117315668	-	LFSINE_Vert	SINE	tRNA	chr5	117315644	117315646	-	ENSMUST00000181440.2,ENSMUSG00000097163.2	BC051077	ENSMUSG00000097163.2	ENSMUST00000181440.2	lincRNA	chr5:117312518-117315645
chr5	117323445	117323756	+	L2b	LINE	L2	chr5	117323645	117323647	+	ENSMUST00000147182.4,ENSMUSG00000066894.14	Vsig10	ENSMUSG00000066894.14	ENSMUST00000147182.4	protein_coding	chr5:117323646-117354997
chr5	117520671	117520701	+	(TG)n	Simple_repeat	Simple_repeat	chr5	117520698	117520700	+	ENSMUST00000201553.1,ENSMUSG00000107199.1	Gm42550	ENSMUSG00000107199.1	ENSMUST00000201553.1	TEC	chr5:117520699-117521658
chr5	117918896	117919223	-	ORR1B1	LTR	ERVL-MaLR	chr5	117919174	117919176	+	ENSMUST00000138554.1,ENSMUSG00000029361.18	Nos1	ENSMUSG00000029361.18	ENSMUST00000138554.1	protein_coding	chr5:117919175-117925731
chr5	117976473	117976560	-	U6	snRNA	snRNA	chr5	117976559	117976561	-	ENSMUST00000157460.1,ENSMUSG00000088085.1	Gm25343	ENSMUSG00000088085.1	ENSMUST00000157460.1	snRNA	chr5:117976454-117976560
chr5	118035856	118036209	+	MTC	LTR	ERVL-MaLR	chr5	118036030	118036032	+	ENSMUST00000151792.7,ENSMUSG00000029359.13	Tesc	ENSMUSG00000029359.13	ENSMUST00000151792.7	protein_coding	chr5:118036031-118061773
chr5	118041293	118041352	+	RMER6C	LTR	ERVK	chr5	118041315	118041317	+	ENSMUST00000148777.1,ENSMUSG00000029359.13	Tesc	ENSMUSG00000029359.13	ENSMUST00000148777.1	protein_coding	chr5:118041316-118053664
chr5	118041293	118041352	+	RMER6C	LTR	ERVK	chr5	118041316	118041318	+	ENSMUST00000145526.1,ENSMUSG00000029359.13	Tesc	ENSMUSG00000029359.13	ENSMUST00000145526.1	protein_coding	chr5:118041317-118046380
chr5	118148830	118148894	-	U6	snRNA	snRNA	chr5	118148893	118148895	-	ENSMUST00000157668.1,ENSMUSG00000088293.1	Gm26411	ENSMUSG00000088293.1	ENSMUST00000157668.1	snRNA	chr5:118148788-118148894
chr5	118164612	118164766	-	MIRb	SINE	MIR	chr5	118164647	118164649	+	ENSMUST00000184679.1,ENSMUSG00000046607.6	Hrk	ENSMUSG00000046607.6	ENSMUST00000184679.1	protein_coding	chr5:118164648-118184828
chr5	118229030	118229222	+	MIR3	SINE	MIR	chr5	118229144	118229146	-	ENSMUST00000134281.1,ENSMUSG00000032850.16	Rnft2	ENSMUSG00000032850.16	ENSMUST00000134281.1	protein_coding	chr5:118193572-118229145
chr5	118418744	118418909	+	MIRc	SINE	MIR	chr5	118418817	118418819	-	ENSMUST00000175300.1,ENSMUSG00000093041.1	Gm26455	ENSMUSG00000093041.1	ENSMUST00000175300.1	miRNA	chr5:118418727-118418818
chr5	118560680	118560744	+	GC_rich	Low_complexity	Low_complexity	chr5	118560718	118560720	+	ENSMUST00000100816.7,ENSMUSG00000018076.12	Med13l	ENSMUSG00000018076.12	ENSMUST00000100816.7	protein_coding	chr5:118560719-118765438
chr5	118560680	118560744	+	GC_rich	Low_complexity	Low_complexity	chr5	118560738	118560740	+	ENSMUST00000201010.1,ENSMUSG00000018076.12	Med13l	ENSMUSG00000018076.12	ENSMUST00000201010.1	protein_coding	chr5:118560739-118763916
chr5	118602644	118602735	-	B1_Mus2	SINE	Alu	chr5	118602715	118602717	+	ENSMUST00000201539.1,ENSMUSG00000107286.1	Gm43788	ENSMUSG00000107286.1	ENSMUST00000201539.1	TEC	chr5:118602716-118605132
chr5	118618203	118618409	+	L1MD1	LINE	L1	chr5	118618293	118618295	+	ENSMUST00000202053.1,ENSMUSG00000106798.1	Gm43275	ENSMUSG00000106798.1	ENSMUST00000202053.1	TEC	chr5:118618294-118619313
chr5	118952338	118952586	-	L2a	LINE	L2	chr5	118952338	118952340	+	ENSMUST00000202500.1,ENSMUSG00000107144.1	4930413E15Rik	ENSMUSG00000107144.1	ENSMUST00000202500.1	lincRNA	chr5:118952339-118961261
chr5	119108153	119108328	+	MIRc	SINE	MIR	chr5	119108233	119108235	+	ENSMUST00000190550.1,ENSMUSG00000100573.1	1700081H04Rik	ENSMUSG00000100573.1	ENSMUST00000190550.1	lincRNA	chr5:119108234-119114543
chr5	119297244	119297303	+	5S	rRNA	rRNA	chr5	119297244	119297246	+	ENSMUST00000122599.1,ENSMUSG00000084548.1	n-R5s175	ENSMUSG00000084548.1	ENSMUST00000122599.1	rRNA	chr5:119297245-119297361
chr5	119570738	119570772	+	(A)n	Simple_repeat	Simple_repeat	chr5	119570761	119570763	-	ENSMUST00000200851.1,ENSMUSG00000087516.7	Tbx3os1	ENSMUSG00000087516.7	ENSMUST00000200851.1	antisense	chr5:119570225-119570762
chr5	119834625	119834676	+	(CA)n	Simple_repeat	Simple_repeat	chr5	119834662	119834664	+	ENSMUST00000018407.9,ENSMUSG00000018263.11	Tbx5	ENSMUSG00000018263.11	ENSMUST00000018407.9	protein_coding	chr5:119834663-119885219
chr5	119914730	119915117	+	MTC	LTR	ERVL-MaLR	chr5	119914937	119914939	+	ENSMUST00000202075.1,ENSMUSG00000107084.1	Gm43269	ENSMUSG00000107084.1	ENSMUST00000202075.1	lincRNA	chr5:119914938-119916846
chr5	120287715	120287736	+	(TG)n	Simple_repeat	Simple_repeat	chr5	120287725	120287727	+	ENSMUST00000116762.1,ENSMUSG00000080412.1	Gm26474	ENSMUSG00000080412.1	ENSMUST00000116762.1	miRNA	chr5:120287726-120287847
chr5	120588557	120588660	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	120588611	120588613	-	ENSMUST00000200708.1,ENSMUSG00000032741.9	Tpcn1	ENSMUSG00000032741.9	ENSMUST00000200708.1	protein_coding	chr5:120547331-120588612
chr5	120588557	120588660	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	120588593	120588595	-	ENSMUST00000202072.1,ENSMUSG00000032741.9	Tpcn1	ENSMUSG00000032741.9	ENSMUST00000202072.1	protein_coding	chr5:120582899-120588594
chr5	120588557	120588660	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	120588598	120588600	-	ENSMUST00000201601.1,ENSMUSG00000032741.9	Tpcn1	ENSMUSG00000032741.9	ENSMUST00000201601.1	protein_coding	chr5:120587157-120588599
chr5	120605641	120605739	+	GA-rich	Low_complexity	Low_complexity	chr5	120605716	120605718	-	ENSMUST00000147596.1,ENSMUSG00000029600.10	Rita1	ENSMUSG00000029600.10	ENSMUST00000147596.1	protein_coding	chr5:120602105-120605717
chr5	120745965	120746053	+	RLTR20A4	LTR	ERVK	chr5	120746035	120746037	+	ENSMUST00000201095.1,ENSMUSG00000107075.1	Gm43068	ENSMUSG00000107075.1	ENSMUST00000201095.1	TEC	chr5:120746036-120747308
chr5	120757610	120757770	+	B2_Mm2	SINE	B2	chr5	120757654	120757656	-	ENSMUST00000200795.1,ENSMUSG00000032661.9	Oas3	ENSMUSG00000032661.9	ENSMUST00000200795.1	protein_coding	chr5:120755399-120757655
chr5	120852168	120852306	+	B1_Mus1	SINE	Alu	chr5	120852295	120852297	-	ENSMUST00000175198.1,ENSMUSG00000092939.1	Gm22907	ENSMUSG00000092939.1	ENSMUST00000175198.1	miRNA	chr5:120852171-120852296
chr5	121191386	121191487	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	121191396	121191398	-	ENSMUST00000100770.8,ENSMUSG00000043733.14	Ptpn11	ENSMUSG00000043733.14	ENSMUST00000100770.8	protein_coding	chr5:121130533-121191397
chr5	121356843	121357005	+	U1	snRNA	snRNA	chr5	121356843	121356845	+	ENSMUST00000104159.1,ENSMUSG00000077347.1	Gm24671	ENSMUSG00000077347.1	ENSMUST00000104159.1	snRNA	chr5:121356844-121357001
chr5	121402541	121402661	-	B1_Mus2	SINE	Alu	chr5	121402657	121402659	+	ENSMUST00000198012.1,ENSMUSG00000106115.1	Gm43420	ENSMUSG00000106115.1	ENSMUST00000198012.1	TEC	chr5:121402658-121404514
chr5	121453250	121453370	+	ID_B1	SINE	B4	chr5	121453308	121453310	+	ENSMUST00000156080.7,ENSMUSG00000029452.18	Tmem116	ENSMUSG00000029452.18	ENSMUST00000156080.7	protein_coding	chr5:121453309-121518171
chr5	121453282	121453402	+	B1_Mus2	SINE	Alu	chr5	121453308	121453310	+	ENSMUST00000156080.7,ENSMUSG00000029452.18	Tmem116	ENSMUSG00000029452.18	ENSMUST00000156080.7	protein_coding	chr5:121453309-121518171
chr5	121463725	121463780	+	CT-rich	Low_complexity	Low_complexity	chr5	121463736	121463738	+	ENSMUST00000149966.2,ENSMUSG00000029452.18	Tmem116	ENSMUSG00000029452.18	ENSMUST00000149966.2	protein_coding	chr5:121463737-121494249
chr5	121527253	121527372	-	PB1D10	SINE	Alu	chr5	121527252	121527254	-	ENSMUST00000126524.4,ENSMUSG00000029454.15	Mapkapk5	ENSMUSG00000029454.15	ENSMUST00000126524.4	protein_coding	chr5:121525052-121527253
chr5	121571141	121571255	-	L1MC4	LINE	L1	chr5	121571186	121571188	-	ENSMUST00000196694.1,ENSMUSG00000029455.14	Aldh2	ENSMUSG00000029455.14	ENSMUST00000196694.1	protein_coding	chr5:121567878-121571187
chr5	121660558	121660692	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	121660562	121660564	+	ENSMUST00000031414.14,ENSMUSG00000029458.14	Brap	ENSMUSG00000029458.14	ENSMUST00000031414.14	protein_coding	chr5:121660563-121687256
chr5	121660558	121660692	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	121660573	121660575	+	ENSMUST00000140996.5,ENSMUSG00000029458.14	Brap	ENSMUSG00000029458.14	ENSMUST00000140996.5	protein_coding	chr5:121660574-121687243
chr5	121660558	121660692	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	121660600	121660602	+	ENSMUST00000132491.1,ENSMUSG00000029458.14	Brap	ENSMUSG00000029458.14	ENSMUST00000132491.1	protein_coding	chr5:121660601-121663973
chr5	121715105	121715128	+	(T)n	Simple_repeat	Simple_repeat	chr5	121715108	121715110	+	ENSMUST00000200067.1,ENSMUSG00000106110.1	Gm43571	ENSMUSG00000106110.1	ENSMUST00000200067.1	TEC	chr5:121715109-121718206
chr5	121727396	121727483	-	PB1D10	SINE	Alu	chr5	121727402	121727404	-	ENSMUST00000162348.1,ENSMUSG00000089729.1	Gm16552	ENSMUSG00000089729.1	ENSMUST00000162348.1	antisense	chr5:121717666-121727403
chr5	121741332	121742490	-	Lx9	LINE	L1	chr5	121742416	121742418	+	ENSMUST00000195919.1,ENSMUSG00000105179.1	Gm42866	ENSMUSG00000105179.1	ENSMUST00000195919.1	TEC	chr5:121742417-121745720
chr5	121805464	121805591	-	B1_Mur1	SINE	Alu	chr5	121805578	121805580	+	ENSMUST00000159928.1,ENSMUSG00000042605.16	Atxn2	ENSMUSG00000042605.16	ENSMUST00000159928.1	protein_coding	chr5:121805579-121814734
chr5	121874322	121874343	+	(CAGA)n	Simple_repeat	Simple_repeat	chr5	121874323	121874325	-	ENSMUST00000156942.4,ENSMUSG00000042589.18	Cux2	ENSMUSG00000042589.18	ENSMUST00000156942.4	protein_coding	chr5:121873089-121874324
chr5	121914887	121915366	-	MT2C_Mm	LTR	ERVL	chr5	121915071	121915073	-	ENSMUST00000133760.7,ENSMUSG00000042589.18	Cux2	ENSMUSG00000042589.18	ENSMUST00000133760.7	protein_coding	chr5:121879815-121915072
chr5	122025206	122025342	-	MLT1K	LTR	ERVL-MaLR	chr5	122025329	122025331	+	ENSMUST00000198001.1,ENSMUSG00000105795.1	Gm3970	ENSMUSG00000105795.1	ENSMUST00000198001.1	antisense	chr5:122025330-122029697
chr5	122049824	122049855	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	122049850	122049852	-	ENSMUST00000111752.9,ENSMUSG00000042589.18	Cux2	ENSMUSG00000042589.18	ENSMUST00000111752.9	protein_coding	chr5:121856366-122049851
chr5	122050078	122050124	+	GC_rich	Low_complexity	Low_complexity	chr5	122050101	122050103	-	ENSMUST00000154139.7,ENSMUSG00000042589.18	Cux2	ENSMUSG00000042589.18	ENSMUST00000154139.7	protein_coding	chr5:121884754-122050102
chr5	122101535	122101626	+	MIRc	SINE	MIR	chr5	122101579	122101581	+	ENSMUST00000153816.5,ENSMUSG00000013936.12	Myl2	ENSMUSG00000013936.12	ENSMUST00000153816.5	protein_coding	chr5:122101580-122103928
chr5	122137950	122138127	+	MLT1L	LTR	ERVL-MaLR	chr5	122138061	122138063	-	ENSMUST00000058960.13,ENSMUSG00000043036.13	Ccdc63	ENSMUSG00000043036.13	ENSMUST00000058960.13	protein_coding	chr5:122108040-122138062
chr5	122140691	122141127	-	MT2A	LTR	ERVL	chr5	122140822	122140824	-	ENSMUST00000196608.1,ENSMUSG00000043036.13	Ccdc63	ENSMUSG00000043036.13	ENSMUST00000196608.1	protein_coding	chr5:122136119-122140823
chr5	122165595	122165720	+	RSINE1	SINE	B4	chr5	122165596	122165598	+	ENSMUST00000199354.1,ENSMUSG00000105742.1	Gm42748	ENSMUSG00000105742.1	ENSMUST00000199354.1	TEC	chr5:122165597-122167937
chr5	122284296	122284435	+	G-rich	Low_complexity	Low_complexity	chr5	122284364	122284366	+	ENSMUST00000053426.14,ENSMUSG00000038582.15	Pptc7	ENSMUSG00000038582.15	ENSMUST00000053426.14	protein_coding	chr5:122284365-122324281
chr5	122357614	122357765	-	B1_Mus1	SINE	Alu	chr5	122357626	122357628	+	ENSMUST00000199086.1,ENSMUSG00000029462.18	Vps29	ENSMUSG00000029462.18	ENSMUST00000199086.1	protein_coding	chr5:122357627-122360990
chr5	122395753	122396147	-	MTA_Mm	LTR	ERVL-MaLR	chr5	122395813	122395815	+	ENSMUST00000031421.11,ENSMUSG00000029465.14	Arpc3	ENSMUSG00000029465.14	ENSMUST00000031421.11	protein_coding	chr5:122395814-122406063
chr5	122408437	122408572	+	B1_Mur1	SINE	Alu	chr5	122408489	122408491	+	ENSMUST00000198417.1,ENSMUSG00000105895.1	Gm42829	ENSMUSG00000105895.1	ENSMUST00000198417.1	sense_intronic	chr5:122408490-122411074
chr5	122484951	122485099	+	B1_Mus1	SINE	Alu	chr5	122484998	122485000	-	ENSMUST00000197944.1,ENSMUSG00000105434.1	Gm43359	ENSMUSG00000105434.1	ENSMUST00000197944.1	TEC	chr5:122482800-122484999
chr5	122496149	122496349	-	B3A	SINE	B2	chr5	122496158	122496160	+	ENSMUST00000196562.1,ENSMUSG00000106375.1	Gm43361	ENSMUSG00000106375.1	ENSMUST00000196562.1	TEC	chr5:122496159-122500848
chr5	122502146	122502208	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	122502173	122502175	-	ENSMUST00000179939.7,ENSMUSG00000029467.15	Atp2a2	ENSMUSG00000029467.15	ENSMUST00000179939.7	protein_coding	chr5:122453513-122502174
chr5	122506788	122506882	+	U6	snRNA	snRNA	chr5	122506788	122506790	+	ENSMUST00000157958.1,ENSMUSG00000088583.1	Gm22965	ENSMUSG00000088583.1	ENSMUST00000157958.1	snRNA	chr5:122506789-122506889
chr5	122568042	122568135	-	PB1D9	SINE	Alu	chr5	122568103	122568105	-	ENSMUST00000197208.1,ENSMUSG00000105815.1	Gm43541	ENSMUSG00000105815.1	ENSMUST00000197208.1	TEC	chr5:122567524-122568104
chr5	122580800	122581682	+	RMER19B	LTR	ERVK	chr5	122581468	122581470	+	ENSMUST00000198918.1,ENSMUSG00000105430.1	Gm43301	ENSMUSG00000105430.1	ENSMUST00000198918.1	antisense	chr5:122581469-122584853
chr5	122603385	122603532	-	B1_Mm	SINE	Alu	chr5	122603492	122603494	-	ENSMUST00000139590.7,ENSMUSG00000029469.14	Ift81	ENSMUSG00000029469.14	ENSMUST00000139590.7	protein_coding	chr5:122591208-122603493
chr5	122682518	122682712	-	B3	SINE	B2	chr5	122682596	122682598	+	ENSMUST00000184992.1,ENSMUSG00000099324.1	Mir8115	ENSMUSG00000099324.1	ENSMUST00000184992.1	miRNA	chr5:122682597-122682715
chr5	122779289	122779340	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr5	122779332	122779334	-	ENSMUST00000200109.4,ENSMUSG00000029471.13	Camkk2	ENSMUSG00000029471.13	ENSMUST00000200109.4	protein_coding	chr5:122733188-122779333
chr5	122779289	122779340	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr5	122779334	122779336	-	ENSMUST00000199988.1,ENSMUSG00000029471.13	Camkk2	ENSMUSG00000029471.13	ENSMUST00000199988.1	protein_coding	chr5:122748031-122779335
chr5	122779289	122779340	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr5	122779324	122779326	-	ENSMUST00000196742.1,ENSMUSG00000029471.13	Camkk2	ENSMUSG00000029471.13	ENSMUST00000196742.1	protein_coding	chr5:122756276-122779325
chr5	122779289	122779340	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr5	122779314	122779316	-	ENSMUST00000199599.1,ENSMUSG00000029471.13	Camkk2	ENSMUSG00000029471.13	ENSMUST00000199599.1	protein_coding	chr5:122764006-122779315
chr5	122779370	122779391	+	GC_rich	Low_complexity	Low_complexity	chr5	122779381	122779383	-	ENSMUST00000111668.7,ENSMUSG00000029471.13	Camkk2	ENSMUSG00000029471.13	ENSMUST00000111668.7	protein_coding	chr5:122731170-122779382
chr5	122779492	122779526	+	G-rich	Low_complexity	Low_complexity	chr5	122779524	122779526	+	ENSMUST00000199279.1,ENSMUSG00000105613.1	Gm43684	ENSMUSG00000105613.1	ENSMUST00000199279.1	TEC	chr5:122779525-122786097
chr5	122900323	122900382	+	GC_rich	Low_complexity	Low_complexity	chr5	122900354	122900356	-	ENSMUST00000031435.13,ENSMUSG00000029475.17	Kdm2b	ENSMUSG00000029475.17	ENSMUST00000031435.13	protein_coding	chr5:122870668-122900355
chr5	122922023	122922249	-	B4A	SINE	B4	chr5	122922106	122922108	-	ENSMUST00000129998.7,ENSMUSG00000029475.17	Kdm2b	ENSMUSG00000029475.17	ENSMUST00000129998.7	protein_coding	chr5:122883428-122922107
chr5	123012752	123013090	-	MTD	LTR	ERVL-MaLR	chr5	123012873	123012875	-	ENSMUST00000172729.1,ENSMUSG00000105311.1	Gm44574	ENSMUSG00000105311.1	ENSMUST00000172729.1	processed_transcript	chr5:122987683-123012874
chr5	123012752	123013090	-	MTD	LTR	ERVL-MaLR	chr5	123012877	123012879	-	ENSMUST00000173670.3,ENSMUSG00000106555.4	Gm2479	ENSMUSG00000106555.4	ENSMUST00000173670.3	antisense	chr5:123007464-123012878
chr5	123162700	123162721	+	B1_Mur4	SINE	Alu	chr5	123162708	123162710	+	ENSMUST00000173221.1,ENSMUSG00000038384.16	Setd1b	ENSMUSG00000038384.16	ENSMUST00000173221.1	protein_coding	chr5:123162709-123165162
chr5	123169332	123169445	+	PB1D11	SINE	Alu	chr5	123169412	123169414	+	ENSMUST00000199260.4,ENSMUSG00000029440.15	Psmd9	ENSMUSG00000029440.15	ENSMUST00000199260.4	protein_coding	chr5:123169413-123239585
chr5	123172851	123172922	+	B1_Mur1	SINE	Alu	chr5	123172910	123172912	-	ENSMUST00000155092.1,ENSMUSG00000029445.13	Hpd	ENSMUSG00000029445.13	ENSMUST00000155092.1	protein_coding	chr5:123171872-123172911
chr5	123175909	123175972	+	MamTip2	DNA	hAT-Tip100	chr5	123175914	123175916	-	ENSMUST00000144679.1,ENSMUSG00000029445.13	Hpd	ENSMUSG00000029445.13	ENSMUST00000144679.1	protein_coding	chr5:123172101-123175915
chr5	123191186	123191881	+	RMER19B2	LTR	ERVK	chr5	123191587	123191589	-	ENSMUST00000195921.1,ENSMUSG00000104606.1	Gm43409	ENSMUSG00000104606.1	ENSMUST00000195921.1	lincRNA	chr5:123188701-123191588
chr5	123228903	123229029	+	ID_B1	SINE	B4	chr5	123228946	123228948	+	ENSMUST00000200560.1,ENSMUSG00000029440.15	Psmd9	ENSMUSG00000029440.15	ENSMUST00000200560.1	protein_coding	chr5:123228947-123230871
chr5	123230734	123230882	+	B1_Mur4	SINE	Alu	chr5	123230870	123230872	-	ENSMUST00000181022.1,ENSMUSG00000097213.1	Gm26745	ENSMUSG00000097213.1	ENSMUST00000181022.1	lincRNA	chr5:123047373-123230871
chr5	123271464	123271682	+	B3	SINE	B2	chr5	123271594	123271596	+	ENSMUST00000170536.1,ENSMUSG00000029442.18	Wdr66	ENSMUSG00000029442.18	ENSMUST00000170536.1	protein_coding	chr5:123271595-123293814
chr5	123271464	123271682	+	B3	SINE	B2	chr5	123271594	123271596	+	ENSMUST00000143629.5,ENSMUSG00000029442.18	Wdr66	ENSMUSG00000029442.18	ENSMUST00000143629.5	protein_coding	chr5:123271595-123297775
chr5	123271464	123271682	+	B3	SINE	B2	chr5	123271594	123271596	+	ENSMUST00000163092.7,ENSMUSG00000029442.18	Wdr66	ENSMUSG00000029442.18	ENSMUST00000163092.7	protein_coding	chr5:123271595-123297777
chr5	123273364	123273543	+	B3A	SINE	B2	chr5	123273463	123273465	+	ENSMUST00000197763.1,ENSMUSG00000029442.18	Wdr66	ENSMUSG00000029442.18	ENSMUST00000197763.1	protein_coding	chr5:123273464-123297726
chr5	123277954	123278140	-	B2_Mm2	SINE	B2	chr5	123278127	123278129	+	ENSMUST00000200666.1,ENSMUSG00000029442.18	Wdr66	ENSMUSG00000029442.18	ENSMUST00000200666.1	protein_coding	chr5:123278128-123279585
chr5	123293378	123294154	-	RMER19B	LTR	ERVK	chr5	123293900	123293902	+	ENSMUST00000069311.4,ENSMUSG00000029442.18	Wdr66	ENSMUSG00000029442.18	ENSMUST00000069311.4	protein_coding	chr5:123293901-123326630
chr5	123341782	123341916	-	B4A	SINE	B4	chr5	123341898	123341900	-	ENSMUST00000137257.1,ENSMUSG00000087336.2	Gm15860	ENSMUSG00000087336.2	ENSMUST00000137257.1	antisense	chr5:123334468-123341899
chr5	123344486	123344522	+	(TG)n	Simple_repeat	Simple_repeat	chr5	123344499	123344501	+	ENSMUST00000117971.1,ENSMUSG00000029438.9	Bcl7a	ENSMUSG00000029438.9	ENSMUST00000117971.1	protein_coding	chr5:123344500-123360278
chr5	123360832	123360999	+	U1	snRNA	snRNA	chr5	123360831	123360833	+	ENSMUST00000083257.1,ENSMUSG00000065191.1	Gm23458	ENSMUSG00000065191.1	ENSMUST00000083257.1	snRNA	chr5:123360832-123361000
chr5	123366981	123367099	+	B1_Mus2	SINE	Alu	chr5	123366998	123367000	+	ENSMUST00000200118.1,ENSMUSG00000104830.1	5830487J09Rik	ENSMUSG00000104830.1	ENSMUST00000200118.1	processed_transcript	chr5:123366999-123368919
chr5	123400985	123401160	-	ID_B1	SINE	B4	chr5	123401071	123401073	+	ENSMUST00000197508.1,ENSMUSG00000104940.1	Gm42908	ENSMUSG00000104940.1	ENSMUST00000197508.1	TEC	chr5:123401072-123401941
chr5	123406478	123406530	+	B1_Mus1	SINE	Alu	chr5	123406486	123406488	+	ENSMUST00000196847.1,ENSMUSG00000106636.1	Gm43813	ENSMUSG00000106636.1	ENSMUST00000196847.1	processed_transcript	chr5:123406487-123409234
chr5	123406478	123406530	+	B1_Mus1	SINE	Alu	chr5	123406486	123406488	+	ENSMUST00000200134.1,ENSMUSG00000106636.1	Gm43813	ENSMUSG00000106636.1	ENSMUST00000200134.1	processed_transcript	chr5:123406487-123411864
chr5	123489481	123489509	+	(CCCCCA)n	Simple_repeat	Simple_repeat	chr5	123489488	123489490	-	ENSMUST00000198463.1,ENSMUSG00000029437.12	Il31	ENSMUSG00000029437.12	ENSMUST00000198463.1	protein_coding	chr5:123480401-123489489
chr5	123518143	123518238	+	PB1D10	SINE	Alu	chr5	123518230	123518232	+	ENSMUST00000158764.1,ENSMUSG00000089389.1	Gm24682	ENSMUSG00000089389.1	ENSMUST00000158764.1	scaRNA	chr5:123518231-123518367
chr5	123628200	123628257	+	U2	snRNA	snRNA	chr5	123628200	123628202	+	ENSMUST00000122603.1,ENSMUSG00000084552.1	Gm24840	ENSMUSG00000084552.1	ENSMUST00000122603.1	snRNA	chr5:123628201-123628347
chr5	123720799	123720834	+	(TCG)n	Simple_repeat	Simple_repeat	chr5	123720822	123720824	-	ENSMUST00000196333.4,ENSMUSG00000029427.11	Zcchc8	ENSMUSG00000029427.11	ENSMUST00000196333.4	protein_coding	chr5:123709195-123720823
chr5	123772669	123772861	-	B2_Mm2	SINE	B2	chr5	123772783	123772785	+	ENSMUST00000197665.1,ENSMUSG00000029414.11	Kntc1	ENSMUSG00000029414.11	ENSMUST00000197665.1	protein_coding	chr5:123772784-123779641
chr5	123787192	123787294	+	PB1D10	SINE	Alu	chr5	123787211	123787213	+	ENSMUST00000198716.1,ENSMUSG00000029414.11	Kntc1	ENSMUSG00000029414.11	ENSMUST00000198716.1	protein_coding	chr5:123787212-123790126
chr5	123962623	123962665	+	CT-rich	Low_complexity	Low_complexity	chr5	123962627	123962629	+	ENSMUST00000197673.1,ENSMUSG00000061882.12	Ccdc62	ENSMUSG00000061882.12	ENSMUST00000197673.1	protein_coding	chr5:123962628-123967097
chr5	123980089	123980317	+	MLTR14	LTR	ERV1	chr5	123980253	123980255	+	ENSMUST00000167879.1,ENSMUSG00000000915.15	Hip1r	ENSMUSG00000000915.15	ENSMUST00000167879.1	protein_coding	chr5:123980254-123989984
chr5	124122098	124122130	+	(CCCCCT)n	Simple_repeat	Simple_repeat	chr5	124122099	124122101	-	ENSMUST00000161479.1,ENSMUSG00000029406.15	Pitpnm2	ENSMUSG00000029406.15	ENSMUST00000161479.1	protein_coding	chr5:124121075-124122100
chr5	124139961	124140362	+	MT2A	LTR	ERVL	chr5	124140260	124140262	-	ENSMUST00000161530.1,ENSMUSG00000029406.15	Pitpnm2	ENSMUSG00000029406.15	ENSMUST00000161530.1	protein_coding	chr5:124132978-124140261
chr5	124187181	124187250	+	G-rich	Low_complexity	Low_complexity	chr5	124187181	124187183	-	ENSMUST00000161938.7,ENSMUSG00000029406.15	Pitpnm2	ENSMUSG00000029406.15	ENSMUST00000161938.7	protein_coding	chr5:124119747-124187182
chr5	124194952	124195083	-	MIR	SINE	MIR	chr5	124194959	124194961	+	ENSMUST00000162577.1,ENSMUSG00000089842.2	Pitpnm2os2	ENSMUSG00000089842.2	ENSMUST00000162577.1	antisense	chr5:124194960-124200346
chr5	124195637	124195785	-	B1_Mus1	SINE	Alu	chr5	124195641	124195643	+	ENSMUST00000198466.1,ENSMUSG00000089842.2	Pitpnm2os2	ENSMUSG00000089842.2	ENSMUST00000198466.1	antisense	chr5:124195642-124198108
chr5	124237669	124237917	+	L1MB5	LINE	L1	chr5	124237723	124237725	+	ENSMUST00000197756.1,ENSMUSG00000105759.1	Gm42425	ENSMUSG00000105759.1	ENSMUST00000197756.1	antisense	chr5:124237724-124238435
chr5	124279708	124280789	+	L1_Mur2	LINE	L1	chr5	124279911	124279913	-	ENSMUST00000200032.1,ENSMUSG00000105382.1	Gm43339	ENSMUSG00000105382.1	ENSMUST00000200032.1	TEC	chr5:124278307-124279912
chr5	124301676	124301827	+	B1_Mus2	SINE	Alu	chr5	124301826	124301828	-	ENSMUST00000200448.1,ENSMUSG00000105228.1	Gm43340	ENSMUSG00000105228.1	ENSMUST00000200448.1	TEC	chr5:124300484-124301827
chr5	124301827	124301957	+	RLTR20D	LTR	ERVK	chr5	124301826	124301828	-	ENSMUST00000200448.1,ENSMUSG00000105228.1	Gm43340	ENSMUSG00000105228.1	ENSMUST00000200448.1	TEC	chr5:124300484-124301827
chr5	124354655	124354741	+	GC_rich	Low_complexity	Low_complexity	chr5	124354670	124354672	-	ENSMUST00000031341.10,ENSMUSG00000029394.11	Cdk2ap1	ENSMUSG00000029394.11	ENSMUST00000031341.10	protein_coding	chr5:124345417-124354671
chr5	124362873	124363472	-	MT2B2	LTR	ERVL	chr5	124363081	124363083	-	ENSMUST00000196910.1,ENSMUSG00000029394.11	Cdk2ap1	ENSMUSG00000029394.11	ENSMUST00000196910.1	protein_coding	chr5:124346027-124363082
chr5	124386935	124386956	+	(A)n	Simple_repeat	Simple_repeat	chr5	124386955	124386957	-	ENSMUST00000199245.1,ENSMUSG00000038095.15	Sbno1	ENSMUSG00000038095.15	ENSMUST00000199245.1	protein_coding	chr5:124385984-124386956
chr5	124390900	124391037	-	B1_Mur4	SINE	Alu	chr5	124390907	124390909	-	ENSMUST00000197228.1,ENSMUSG00000038095.15	Sbno1	ENSMUSG00000038095.15	ENSMUST00000197228.1	protein_coding	chr5:124390257-124390908
chr5	124392317	124392511	+	B2_Mm2	SINE	B2	chr5	124392415	124392417	-	ENSMUST00000197723.1,ENSMUSG00000038095.15	Sbno1	ENSMUSG00000038095.15	ENSMUST00000197723.1	protein_coding	chr5:124390905-124392416
chr5	124396255	124396543	+	B4A	SINE	B4	chr5	124396256	124396258	-	ENSMUST00000198285.1,ENSMUSG00000038095.15	Sbno1	ENSMUSG00000038095.15	ENSMUST00000198285.1	protein_coding	chr5:124392966-124396257
chr5	124397108	124397282	+	B2_Mm1t	SINE	B2	chr5	124397121	124397123	-	ENSMUST00000196647.1,ENSMUSG00000038095.15	Sbno1	ENSMUSG00000038095.15	ENSMUST00000196647.1	protein_coding	chr5:124395923-124397122
chr5	124425519	124425552	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	124425541	124425543	-	ENSMUST00000197974.1,ENSMUSG00000038095.15	Sbno1	ENSMUSG00000038095.15	ENSMUST00000197974.1	protein_coding	chr5:124423510-124425542
chr5	124425680	124425739	+	C-rich	Low_complexity	Low_complexity	chr5	124425705	124425707	+	ENSMUST00000192373.1,ENSMUSG00000103864.1	Gm37415	ENSMUSG00000103864.1	ENSMUST00000192373.1	TEC	chr5:124425706-124426879
chr5	124445442	124445549	+	GC_rich	Low_complexity	Low_complexity	chr5	124445492	124445494	+	ENSMUST00000100709.6,ENSMUSG00000049327.17	Kmt5a	ENSMUSG00000049327.17	ENSMUST00000100709.6	protein_coding	chr5:124445493-124460960
chr5	124445442	124445549	+	GC_rich	Low_complexity	Low_complexity	chr5	124445504	124445506	+	ENSMUST00000147969.7,ENSMUSG00000049327.17	Kmt5a	ENSMUSG00000049327.17	ENSMUST00000147969.7	protein_coding	chr5:124445505-124461543
chr5	124555606	124555955	-	ORR1D2	LTR	ERVL-MaLR	chr5	124555660	124555662	+	ENSMUST00000196021.1,ENSMUSG00000029389.17	Ddx55	ENSMUSG00000029389.17	ENSMUST00000196021.1	protein_coding	chr5:124555661-124557090
chr5	124629044	124629118	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	124629051	124629053	+	ENSMUST00000037865.12,ENSMUSG00000038023.12	Atp6v0a2	ENSMUSG00000038023.12	ENSMUST00000037865.12	protein_coding	chr5:124629052-124724455
chr5	124629044	124629118	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	124629064	124629066	+	ENSMUST00000198382.4,ENSMUSG00000038023.12	Atp6v0a2	ENSMUSG00000038023.12	ENSMUST00000198382.4	protein_coding	chr5:124629065-124722139
chr5	124715664	124715722	-	RLTR20C2_MM	LTR	ERVK	chr5	124715704	124715706	+	ENSMUST00000197087.4,ENSMUSG00000038023.12	Atp6v0a2	ENSMUSG00000038023.12	ENSMUST00000197087.4	protein_coding	chr5:124715705-124723601
chr5	124718086	124718276	-	L1M3	LINE	L1	chr5	124718195	124718197	+	ENSMUST00000197161.1,ENSMUSG00000038023.12	Atp6v0a2	ENSMUSG00000038023.12	ENSMUST00000197161.1	protein_coding	chr5:124718196-124721816
chr5	124801324	124801706	-	L1MB5	LINE	L1	chr5	124801467	124801469	+	ENSMUST00000197824.1,ENSMUSG00000038011.15	Dnah10	ENSMUSG00000038011.15	ENSMUST00000197824.1	protein_coding	chr5:124801468-124804686
chr5	125179105	125179244	+	GC_rich	Low_complexity	Low_complexity	chr5	125179213	125179215	-	ENSMUST00000111402.8,ENSMUSG00000029478.16	Ncor2	ENSMUSG00000029478.16	ENSMUST00000111402.8	protein_coding	chr5:125017153-125179214
chr5	125179105	125179244	+	GC_rich	Low_complexity	Low_complexity	chr5	125179218	125179220	-	ENSMUST00000111398.7,ENSMUSG00000029478.16	Ncor2	ENSMUSG00000029478.16	ENSMUST00000111398.7	protein_coding	chr5:125017153-125179219
chr5	125179105	125179244	+	GC_rich	Low_complexity	Low_complexity	chr5	125179179	125179181	-	ENSMUST00000111393.7,ENSMUSG00000029478.16	Ncor2	ENSMUSG00000029478.16	ENSMUST00000111393.7	protein_coding	chr5:125017155-125179180
chr5	125179105	125179244	+	GC_rich	Low_complexity	Low_complexity	chr5	125179201	125179203	-	ENSMUST00000111394.7,ENSMUSG00000029478.16	Ncor2	ENSMUSG00000029478.16	ENSMUST00000111394.7	protein_coding	chr5:125017835-125179202
chr5	125272650	125273044	-	MTE2a	LTR	ERVL-MaLR	chr5	125272814	125272816	-	ENSMUST00000198586.1,ENSMUSG00000105039.1	Gm32585	ENSMUSG00000105039.1	ENSMUST00000198586.1	lincRNA	chr5:125238314-125272815
chr5	125284144	125284193	+	LTR67B	LTR	ERVL	chr5	125284158	125284160	-	ENSMUST00000124582.1,ENSMUSG00000037936.15	Scarb1	ENSMUSG00000037936.15	ENSMUST00000124582.1	protein_coding	chr5:125277787-125284159
chr5	125286655	125286840	-	B2_Mm2	SINE	B2	chr5	125286676	125286678	-	ENSMUST00000135736.1,ENSMUSG00000037936.15	Scarb1	ENSMUSG00000037936.15	ENSMUST00000135736.1	protein_coding	chr5:125282950-125286677
chr5	125304470	125304633	+	ORR1C2	LTR	ERVL-MaLR	chr5	125304541	125304543	-	ENSMUST00000123338.7,ENSMUSG00000037936.15	Scarb1	ENSMUSG00000037936.15	ENSMUST00000123338.7	protein_coding	chr5:125297319-125304542
chr5	125321434	125321529	+	(TA)n	Simple_repeat	Simple_repeat	chr5	125321443	125321445	-	ENSMUST00000198853.1,ENSMUSG00000106458.1	Gm42633	ENSMUSG00000106458.1	ENSMUST00000198853.1	TEC	chr5:125318681-125321444
chr5	125360926	125361271	+	MTEa	LTR	ERVL-MaLR	chr5	125361174	125361176	+	ENSMUST00000200649.1,ENSMUSG00000104932.1	Gm40323	ENSMUSG00000104932.1	ENSMUST00000200649.1	lincRNA	chr5:125361175-125370760
chr5	125441708	125441763	+	(CTG)n	Simple_repeat	Simple_repeat	chr5	125441749	125441751	+	ENSMUST00000198811.1,ENSMUSG00000037905.13	Bri3bp	ENSMUSG00000037905.13	ENSMUST00000198811.1	protein_coding	chr5:125441750-125454726
chr5	125471490	125471628	+	B1_Mm	SINE	Alu	chr5	125471496	125471498	+	ENSMUST00000199788.1,ENSMUSG00000104793.1	Gm43756	ENSMUSG00000104793.1	ENSMUST00000199788.1	TEC	chr5:125471497-125474334
chr5	125479303	125479431	-	B1F	SINE	Alu	chr5	125479376	125479378	+	ENSMUST00000184258.1,ENSMUSG00000098350.1	Gm27551	ENSMUSG00000098350.1	ENSMUST00000184258.1	miRNA	chr5:125479377-125479453
chr5	125479305	125479452	-	MT2B	LTR	ERVL	chr5	125479376	125479378	+	ENSMUST00000184258.1,ENSMUSG00000098350.1	Gm27551	ENSMUSG00000098350.1	ENSMUST00000184258.1	miRNA	chr5:125479377-125479453
chr5	125509478	125509612	+	B1_Mus1	SINE	Alu	chr5	125509492	125509494	+	ENSMUST00000131355.1,ENSMUSG00000029482.4	Aacs	ENSMUSG00000029482.4	ENSMUST00000131355.1	protein_coding	chr5:125509493-125511896
chr5	125962124	125962506	-	MTB_Mm	LTR	ERVL-MaLR	chr5	125962361	125962363	-	ENSMUST00000197523.1,ENSMUSG00000106378.1	Gm42945	ENSMUSG00000106378.1	ENSMUST00000197523.1	lincRNA	chr5:125958409-125962362
chr5	126389547	126389654	-	U6	snRNA	snRNA	chr5	126389653	126389655	-	ENSMUST00000178061.1,ENSMUSG00000094875.1	Gm23151	ENSMUSG00000094875.1	ENSMUST00000178061.1	snRNA	chr5:126389548-126389654
chr5	126513875	126513981	-	U6	snRNA	snRNA	chr5	126513980	126513982	-	ENSMUST00000122602.1,ENSMUSG00000084551.1	Gm24839	ENSMUSG00000084551.1	ENSMUST00000122602.1	snRNA	chr5:126513875-126513981
chr5	126727200	126727319	+	MTEa	LTR	ERVL-MaLR	chr5	126727283	126727285	-	ENSMUST00000200003.1,ENSMUSG00000106235.1	Gm33347	ENSMUSG00000106235.1	ENSMUST00000200003.1	lincRNA	chr5:126724326-126727284
chr5	126815325	126815763	-	MTD	LTR	ERVL-MaLR	chr5	126815481	126815483	-	ENSMUST00000199363.1,ENSMUSG00000105316.1	Gm42953	ENSMUSG00000105316.1	ENSMUST00000199363.1	lincRNA	chr5:126797255-126815482
chr5	127020068	127020445	-	MTD	LTR	ERVL-MaLR	chr5	127020226	127020228	+	ENSMUST00000197355.1,ENSMUSG00000105782.1	Gm42955	ENSMUSG00000105782.1	ENSMUST00000197355.1	TEC	chr5:127020227-127023619
chr5	127107957	127108205	+	MTD	LTR	ERVL-MaLR	chr5	127108068	127108070	+	ENSMUST00000196673.1,ENSMUSG00000105575.1	Gm43475	ENSMUSG00000105575.1	ENSMUST00000196673.1	lincRNA	chr5:127108069-127108856
chr5	127308547	127309214	+	L1MC2	LINE	L1	chr5	127309016	127309018	+	ENSMUST00000196548.1,ENSMUSG00000104971.1	9430087B13Rik	ENSMUSG00000104971.1	ENSMUST00000196548.1	TEC	chr5:127309017-127310101
chr5	127537959	127538458	+	MT2_Mm	LTR	ERVL	chr5	127538259	127538261	+	ENSMUST00000128068.7,ENSMUSG00000034324.16	Tmem132c	ENSMUSG00000034324.16	ENSMUST00000128068.7	protein_coding	chr5:127538260-127564866
chr5	127541325	127541824	+	MT2_Mm	LTR	ERVL	chr5	127541625	127541627	+	ENSMUST00000132592.1,ENSMUSG00000034324.16	Tmem132c	ENSMUSG00000034324.16	ENSMUST00000132592.1	protein_coding	chr5:127541626-127564866
chr5	127876169	127882057	+	L1Md_T	LINE	L1	chr5	127877332	127877334	+	ENSMUST00000109542.2,ENSMUSG00000061331.5	Gm17132	ENSMUSG00000061331.5	ENSMUST00000109542.2	unprocessed_pseudogene	chr5:127877333-127878490
chr5	127876169	127882057	+	L1Md_T	LINE	L1	chr5	127878530	127878532	+	ENSMUST00000164420.1,ENSMUSG00000085328.2	Gm17131	ENSMUSG00000085328.2	ENSMUST00000164420.1	unprocessed_pseudogene	chr5:127878531-127882376
chr5	128241317	128241353	+	(A)n	Simple_repeat	Simple_repeat	chr5	128241338	128241340	-	ENSMUST00000197363.1,ENSMUSG00000104581.1	Gm42497	ENSMUSG00000104581.1	ENSMUST00000197363.1	TEC	chr5:128239382-128241339
chr5	128275627	128275968	-	ORR1A1	LTR	ERVL-MaLR	chr5	128275878	128275880	-	ENSMUST00000200136.1,ENSMUSG00000034310.8	Tmem132d	ENSMUSG00000034310.8	ENSMUST00000200136.1	protein_coding	chr5:128268805-128275879
chr5	128275627	128275968	-	ORR1A1	LTR	ERVL-MaLR	chr5	128275816	128275818	-	ENSMUST00000200316.1,ENSMUSG00000034310.8	Tmem132d	ENSMUSG00000034310.8	ENSMUST00000200316.1	protein_coding	chr5:128268910-128275817
chr5	128444393	128444422	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	128444415	128444417	+	ENSMUST00000200324.1,ENSMUSG00000106275.1	Gm42495	ENSMUSG00000106275.1	ENSMUST00000200324.1	lincRNA	chr5:128444416-128447731
chr5	128702243	128702634	+	MTD	LTR	ERVL-MaLR	chr5	128702523	128702525	+	ENSMUST00000200192.4,ENSMUSG00000029423.10	Piwil1	ENSMUSG00000029423.10	ENSMUST00000200192.4	protein_coding	chr5:128702524-128747334
chr5	128775469	128775619	+	(CA)n	Simple_repeat	Simple_repeat	chr5	128775549	128775551	-	ENSMUST00000199333.1,ENSMUSG00000106522.1	Gm42871	ENSMUSG00000106522.1	ENSMUST00000199333.1	sense_intronic	chr5:128774525-128775550
chr5	128953341	128953425	+	IMPB_01	Satellite	Satellite	chr5	128953361	128953363	-	ENSMUST00000111346.5,ENSMUSG00000029420.12	Rimbp2	ENSMUSG00000029420.12	ENSMUST00000111346.5	protein_coding	chr5:128760401-128953362
chr5	129548932	129549069	+	RSINE1	SINE	B4	chr5	129548940	129548942	+	ENSMUST00000198266.4,ENSMUSG00000029439.14	Sfswap	ENSMUSG00000029439.14	ENSMUST00000198266.4	protein_coding	chr5:129548941-129571381
chr5	129708120	129708853	-	MTC-int	LTR	ERVL-MaLR	chr5	129708511	129708513	-	ENSMUST00000182386.2,ENSMUSG00000034219.15	Sept14	ENSMUSG00000034219.15	ENSMUST00000182386.2	protein_coding	chr5:129683439-129708512
chr5	129752070	129752660	-	Lx8b	LINE	L1	chr5	129752657	129752659	+	ENSMUST00000137604.1,ENSMUSG00000029432.12	Nipsnap2	ENSMUSG00000029432.12	ENSMUST00000137604.1	protein_coding	chr5:129752658-129757202
chr5	129789672	129789701	+	(TTAA)n	Simple_repeat	Simple_repeat	chr5	129789680	129789682	+	ENSMUST00000202854.3,ENSMUSG00000029447.11	Cct6a	ENSMUSG00000029447.11	ENSMUST00000202854.3	processed_transcript	chr5:129789681-129792057
chr5	129793154	129793204	+	(TG)n	Simple_repeat	Simple_repeat	chr5	129793180	129793182	+	ENSMUST00000202262.1,ENSMUSG00000029447.11	Cct6a	ENSMUSG00000029447.11	ENSMUST00000202262.1	processed_transcript	chr5:129793181-129794500
chr5	129870074	129870254	+	B3A	SINE	B2	chr5	129870086	129870088	-	ENSMUST00000154495.1,ENSMUSG00000025537.12	Phkg1	ENSMUSG00000025537.12	ENSMUST00000154495.1	protein_coding	chr5:129866983-129870087
chr5	129871831	129871977	-	B1_Mus2	SINE	Alu	chr5	129871976	129871978	-	ENSMUST00000200832.1,ENSMUSG00000025537.12	Phkg1	ENSMUSG00000025537.12	ENSMUST00000200832.1	protein_coding	chr5:129869859-129871977
chr5	129876932	129876970	+	B1F2	SINE	Alu	chr5	129876946	129876948	-	ENSMUST00000201268.1,ENSMUSG00000106840.1	Gm42790	ENSMUSG00000106840.1	ENSMUST00000201268.1	TEC	chr5:129875979-129876947
chr5	129910865	129911008	+	B1F	SINE	Alu	chr5	129910969	129910971	+	ENSMUST00000192787.1,ENSMUSG00000095789.6	Nupr1l	ENSMUSG00000095789.6	ENSMUST00000192787.1	protein_coding	chr5:129910970-129911281
chr5	129942037	129942161	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	129942108	129942110	+	ENSMUST00000201855.1,ENSMUSG00000066735.8	Vkorc1l1	ENSMUSG00000066735.8	ENSMUST00000201855.1	protein_coding	chr5:129942109-129986692
chr5	129942037	129942161	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	129942126	129942128	+	ENSMUST00000073945.5,ENSMUSG00000066735.8	Vkorc1l1	ENSMUSG00000066735.8	ENSMUST00000073945.5	protein_coding	chr5:129942127-129982579
chr5	129945458	129945586	+	B3A	SINE	B2	chr5	129945579	129945581	+	ENSMUST00000201618.1,ENSMUSG00000107118.1	Gm42986	ENSMUSG00000107118.1	ENSMUST00000201618.1	TEC	chr5:129945580-129948964
chr5	129976885	129977032	-	B1F	SINE	Alu	chr5	129976993	129976995	+	ENSMUST00000202486.1,ENSMUSG00000066735.8	Vkorc1l1	ENSMUSG00000066735.8	ENSMUST00000202486.1	protein_coding	chr5:129976994-129982480
chr5	129990597	129990746	+	B1_Mur4	SINE	Alu	chr5	129990641	129990643	-	ENSMUST00000126676.1,ENSMUSG00000025534.17	Gusb	ENSMUSG00000025534.17	ENSMUST00000126676.1	protein_coding	chr5:129989581-129990642
chr5	130073315	130073522	+	ORR1B1	LTR	ERVL-MaLR	chr5	130073325	130073327	+	ENSMUST00000118993.7,ENSMUSG00000034118.15	Tpst1	ENSMUSG00000034118.15	ENSMUST00000118993.7	protein_coding	chr5:130073326-130135729
chr5	130171789	130171912	+	G-rich	Low_complexity	Low_complexity	chr5	130171797	130171799	+	ENSMUST00000119797.7,ENSMUSG00000025340.14	Rabgef1	ENSMUSG00000025340.14	ENSMUST00000119797.7	protein_coding	chr5:130171798-130214342
chr5	130171789	130171912	+	G-rich	Low_complexity	Low_complexity	chr5	130171823	130171825	+	ENSMUST00000148264.7,ENSMUSG00000025340.14	Rabgef1	ENSMUSG00000025340.14	ENSMUST00000148264.7	protein_coding	chr5:130171824-130210442
chr5	130186855	130187161	-	L1M3	LINE	L1	chr5	130187160	130187162	+	ENSMUST00000119027.7,ENSMUSG00000025340.14	Rabgef1	ENSMUSG00000025340.14	ENSMUST00000119027.7	protein_coding	chr5:130187161-130208752
chr5	130186855	130187161	-	L1M3	LINE	L1	chr5	130187160	130187162	+	ENSMUST00000026390.7,ENSMUSG00000025340.14	Rabgef1	ENSMUSG00000025340.14	ENSMUST00000026390.7	protein_coding	chr5:130187161-130214337
chr5	130211297	130211417	-	RSINE1	SINE	B4	chr5	130211380	130211382	+	ENSMUST00000147493.1,ENSMUSG00000025340.14	Rabgef1	ENSMUSG00000025340.14	ENSMUST00000147493.1	protein_coding	chr5:130211381-130212975
chr5	130216934	130217192	-	ORR1E	LTR	ERVL-MaLR	chr5	130217080	130217082	+	ENSMUST00000202612.1,ENSMUSG00000053094.15	Tmem248	ENSMUSG00000053094.15	ENSMUST00000202612.1	protein_coding	chr5:130217081-130229548
chr5	130223053	130223101	+	(TG)n	Simple_repeat	Simple_repeat	chr5	130223064	130223066	-	ENSMUST00000202719.1,ENSMUSG00000107143.1	Gm6598	ENSMUSG00000107143.1	ENSMUST00000202719.1	antisense	chr5:130220451-130223065
chr5	130226151	130226299	+	(TTTC)n	Simple_repeat	Simple_repeat	chr5	130226215	130226217	+	ENSMUST00000202954.1,ENSMUSG00000106751.1	Gm42467	ENSMUSG00000106751.1	ENSMUST00000202954.1	TEC	chr5:130226216-130227662
chr5	130258860	130258949	-	B4A	SINE	B4	chr5	130258929	130258931	+	ENSMUST00000147619.1,ENSMUSG00000056310.14	Tyw1	ENSMUSG00000056310.14	ENSMUST00000147619.1	protein_coding	chr5:130258930-130269391
chr5	130618520	130618800	-	B4A	SINE	B4	chr5	130618550	130618552	-	ENSMUST00000201334.1,ENSMUSG00000106849.1	Gm43418	ENSMUSG00000106849.1	ENSMUST00000201334.1	TEC	chr5:130618124-130618551
chr5	130782696	130782802	+	U6	snRNA	snRNA	chr5	130782700	130782702	+	ENSMUST00000158347.2,ENSMUSG00000088972.2	Gm23761	ENSMUSG00000088972.2	ENSMUST00000158347.2	snRNA	chr5:130782701-130782804
chr5	130867785	130868007	-	L1Md_F2	LINE	L1	chr5	130867836	130867838	-	ENSMUST00000200788.1,ENSMUSG00000106694.1	Gm42894	ENSMUSG00000106694.1	ENSMUST00000200788.1	TEC	chr5:130864448-130867837
chr5	130898584	130898725	-	B1_Mus1	SINE	Alu	chr5	130898612	130898614	-	ENSMUST00000201486.1,ENSMUSG00000107207.1	Gm42897	ENSMUSG00000107207.1	ENSMUST00000201486.1	TEC	chr5:130896502-130898613
chr5	130959875	130960046	+	RLTR17B_Mm	LTR	ERVK	chr5	130960034	130960036	-	ENSMUST00000201249.1,ENSMUSG00000107295.1	Gm42896	ENSMUSG00000107295.1	ENSMUST00000201249.1	TEC	chr5:130958923-130960035
chr5	131414704	131414943	+	MTD	LTR	ERVL-MaLR	chr5	131414717	131414719	-	ENSMUST00000198696.1,ENSMUSG00000105387.1	Gm29681	ENSMUSG00000105387.1	ENSMUST00000198696.1	lincRNA	chr5:131391600-131414718
chr5	131471382	131471404	+	(C)n	Simple_repeat	Simple_repeat	chr5	131471382	131471384	-	ENSMUST00000198149.1,ENSMUSG00000029673.17	Auts2	ENSMUSG00000029673.17	ENSMUST00000198149.1	protein_coding	chr5:131469604-131471383
chr5	131609415	131609598	+	B4	SINE	B4	chr5	131609592	131609594	-	ENSMUST00000200538.1,ENSMUSG00000105584.1	Gm42588	ENSMUSG00000105584.1	ENSMUST00000200538.1	TEC	chr5:131608297-131609593
chr5	131695661	131695893	+	B4	SINE	B4	chr5	131695874	131695876	-	ENSMUST00000198084.1,ENSMUSG00000105726.1	Gm42443	ENSMUSG00000105726.1	ENSMUST00000198084.1	TEC	chr5:131694721-131695875
chr5	131698346	131698417	+	(TCCC)n	Simple_repeat	Simple_repeat	chr5	131698352	131698354	-	ENSMUST00000197951.1,ENSMUSG00000106557.1	Gm42442	ENSMUSG00000106557.1	ENSMUST00000197951.1	TEC	chr5:131697221-131698353
chr5	131885927	131885954	+	(A)n	Simple_repeat	Simple_repeat	chr5	131885937	131885939	-	ENSMUST00000196044.1,ENSMUSG00000106570.1	C230071H17Rik	ENSMUSG00000106570.1	ENSMUST00000196044.1	TEC	chr5:131882966-131885938
chr5	131934549	131934953	+	BGLII	LTR	ERVK	chr5	131934678	131934680	-	ENSMUST00000197906.1,ENSMUSG00000105720.1	Gm42440	ENSMUSG00000105720.1	ENSMUST00000197906.1	TEC	chr5:131932396-131934679
chr5	131954624	131955023	+	MTC	LTR	ERVL-MaLR	chr5	131954991	131954993	+	ENSMUST00000195931.1,ENSMUSG00000106395.1	Gm42439	ENSMUSG00000106395.1	ENSMUST00000195931.1	antisense	chr5:131954992-131965007
chr5	131975792	131976278	-	Lx	LINE	L1	chr5	131975885	131975887	-	ENSMUST00000196468.1,ENSMUSG00000106386.1	Gm42991	ENSMUSG00000106386.1	ENSMUST00000196468.1	TEC	chr5:131972050-131975886
chr5	131998385	131998430	+	(TG)n	Simple_repeat	Simple_repeat	chr5	131998412	131998414	-	ENSMUST00000200128.1,ENSMUSG00000104936.1	2610011E03Rik	ENSMUSG00000104936.1	ENSMUST00000200128.1	TEC	chr5:131996179-131998413
chr5	132372547	132372854	-	Lx8b	LINE	L1	chr5	132372680	132372682	-	ENSMUST00000200646.1,ENSMUSG00000104994.1	Gm42989	ENSMUSG00000104994.1	ENSMUST00000200646.1	TEC	chr5:132370376-132372681
chr5	132437418	132437449	+	(A)n	Simple_repeat	Simple_repeat	chr5	132437432	132437434	-	ENSMUST00000196948.1,ENSMUSG00000106049.1	Gm43019	ENSMUSG00000106049.1	ENSMUST00000196948.1	TEC	chr5:132434571-132437433
chr5	132449254	132449864	+	RMER13A2	LTR	ERVK	chr5	132449359	132449361	-	ENSMUST00000160135.3,ENSMUSG00000029673.17	Auts2	ENSMUSG00000029673.17	ENSMUST00000160135.3	protein_coding	chr5:132030990-132449360
chr5	132492698	132492880	+	ID_B1	SINE	B4	chr5	132492738	132492740	-	ENSMUST00000200652.1,ENSMUSG00000105624.1	Gm43187	ENSMUSG00000105624.1	ENSMUST00000200652.1	TEC	chr5:132490343-132492739
chr5	132542011	132542038	+	(A)n	Simple_repeat	Simple_repeat	chr5	132542031	132542033	-	ENSMUST00000100564.9,ENSMUSG00000029673.17	Auts2	ENSMUSG00000029673.17	ENSMUST00000100564.9	protein_coding	chr5:132025979-132542032
chr5	132542382	132542404	+	AT_rich	Low_complexity	Low_complexity	chr5	132542403	132542405	-	ENSMUST00000161108.7,ENSMUSG00000029673.17	Auts2	ENSMUSG00000029673.17	ENSMUST00000161108.7	protein_coding	chr5:131768411-132542404
chr5	132545710	132546083	-	MTD	LTR	ERVL-MaLR	chr5	132546055	132546057	+	ENSMUST00000196866.1,ENSMUSG00000105809.1	Gm42626	ENSMUSG00000105809.1	ENSMUST00000196866.1	lincRNA	chr5:132546056-132550633
chr5	132801674	132801888	+	7SK	RNA	RNA	chr5	132801677	132801679	+	ENSMUST00000157498.1,ENSMUSG00000088123.1	Gm25722	ENSMUSG00000088123.1	ENSMUST00000157498.1	misc_RNA	chr5:132801678-132801956
chr5	133443329	133443501	-	RMER15	LTR	ERVL	chr5	133443341	133443343	+	ENSMUST00000198611.1,ENSMUSG00000106097.1	Gm42625	ENSMUSG00000106097.1	ENSMUST00000198611.1	TEC	chr5:133443342-133444263
chr5	133598084	133598490	+	ORR1C2	LTR	ERVL-MaLR	chr5	133598405	133598407	-	ENSMUST00000196125.1,ENSMUSG00000105227.1	Gm36667	ENSMUSG00000105227.1	ENSMUST00000196125.1	lincRNA	chr5:133534590-133598406
chr5	134134774	134134980	+	B3A	SINE	B2	chr5	134134957	134134959	+	ENSMUST00000140240.1,ENSMUSG00000015944.9	Castor2	ENSMUSG00000015944.9	ENSMUST00000140240.1	protein_coding	chr5:134134958-134137546
chr5	134204468	134204684	+	7SK	RNA	RNA	chr5	134204468	134204470	+	ENSMUST00000122780.1,ENSMUSG00000084729.1	Gm24139	ENSMUSG00000084729.1	ENSMUST00000122780.1	misc_RNA	chr5:134204469-134204756
chr5	134206604	134206711	-	RSINE1	SINE	B4	chr5	134206656	134206658	+	ENSMUST00000128842.1,ENSMUSG00000015942.9	Gtf2ird2	ENSMUSG00000015942.9	ENSMUST00000128842.1	protein_coding	chr5:134206657-134216214
chr5	134240983	134241092	+	RSINE1	SINE	B4	chr5	134241044	134241046	-	ENSMUST00000173509.1,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000173509.1	protein_coding	chr5:134239655-134241045
chr5	134259372	134259540	+	B3A	SINE	B2	chr5	134259484	134259486	-	ENSMUST00000201371.1,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000201371.1	protein_coding	chr5:134258157-134259485
chr5	134297082	134297215	+	B1_Mus2	SINE	Alu	chr5	134297173	134297175	-	ENSMUST00000202343.1,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000202343.1	protein_coding	chr5:134295011-134297174
chr5	134314720	134314774	+	(T)n	Simple_repeat	Simple_repeat	chr5	134314759	134314761	-	ENSMUST00000059042.13,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000059042.13	protein_coding	chr5:134237834-134314760
chr5	134314720	134314774	+	(T)n	Simple_repeat	Simple_repeat	chr5	134314745	134314747	-	ENSMUST00000111261.10,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000111261.10	protein_coding	chr5:134237837-134314746
chr5	134314720	134314774	+	(T)n	Simple_repeat	Simple_repeat	chr5	134314745	134314747	-	ENSMUST00000082057.9,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000082057.9	protein_coding	chr5:134237837-134314746
chr5	134314720	134314774	+	(T)n	Simple_repeat	Simple_repeat	chr5	134314719	134314721	-	ENSMUST00000173341.7,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000173341.7	protein_coding	chr5:134237839-134314720
chr5	134314720	134314774	+	(T)n	Simple_repeat	Simple_repeat	chr5	134314726	134314728	-	ENSMUST00000173263.4,ENSMUSG00000060261.15	Gtf2i	ENSMUSG00000060261.15	ENSMUST00000173263.4	protein_coding	chr5:134287020-134314727
chr5	134326348	134326584	-	MTD	LTR	ERVL-MaLR	chr5	134326453	134326455	+	ENSMUST00000175570.1,ENSMUSG00000093311.1	Mir3965	ENSMUSG00000093311.1	ENSMUST00000175570.1	miRNA	chr5:134326454-134326522
chr5	134384473	134384555	-	ID4_	SINE	ID	chr5	134384501	134384503	-	ENSMUST00000200817.1,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000200817.1	protein_coding	chr5:134382792-134384502
chr5	134416239	134416353	+	5S	rRNA	rRNA	chr5	134416238	134416240	+	ENSMUST00000104249.1,ENSMUSG00000077437.1	n-R5s178	ENSMUSG00000077437.1	ENSMUST00000104249.1	rRNA	chr5:134416239-134416352
chr5	134448528	134448612	+	B3A	SINE	B2	chr5	134448573	134448575	+	ENSMUST00000102365.1,ENSMUSG00000076320.1	Gm26340	ENSMUSG00000076320.1	ENSMUST00000102365.1	miRNA	chr5:134448574-134448672
chr5	134456658	134456729	+	GC_rich	Low_complexity	Low_complexity	chr5	134456715	134456717	-	ENSMUST00000171794.8,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000171794.8	protein_coding	chr5:134357656-134456716
chr5	134456658	134456729	+	GC_rich	Low_complexity	Low_complexity	chr5	134456687	134456689	-	ENSMUST00000073161.11,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000073161.11	protein_coding	chr5:134357661-134456688
chr5	134456658	134456729	+	GC_rich	Low_complexity	Low_complexity	chr5	134456715	134456717	-	ENSMUST00000167084.8,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000167084.8	protein_coding	chr5:134357669-134456716
chr5	134456658	134456729	+	GC_rich	Low_complexity	Low_complexity	chr5	134456691	134456693	-	ENSMUST00000100652.9,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000100652.9	protein_coding	chr5:134358635-134456692
chr5	134456658	134456729	+	GC_rich	Low_complexity	Low_complexity	chr5	134456678	134456680	-	ENSMUST00000202414.3,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000202414.3	protein_coding	chr5:134402903-134456679
chr5	134456658	134456729	+	GC_rich	Low_complexity	Low_complexity	chr5	134456673	134456675	-	ENSMUST00000202763.1,ENSMUSG00000023079.14	Gtf2ird1	ENSMUSG00000023079.14	ENSMUST00000202763.1	protein_coding	chr5:134404796-134456674
chr5	134485158	134485483	-	MTD	LTR	ERVL-MaLR	chr5	134485445	134485447	-	ENSMUST00000200763.1,ENSMUSG00000106802.1	Gm42885	ENSMUSG00000106802.1	ENSMUST00000200763.1	TEC	chr5:134481233-134485446
chr5	134556329	134556700	+	MTA_Mm	LTR	ERVL-MaLR	chr5	134556536	134556538	+	ENSMUST00000200729.1,ENSMUSG00000107090.1	Gm42884	ENSMUSG00000107090.1	ENSMUST00000200729.1	antisense	chr5:134556537-134558495
chr5	134592680	134592814	-	ID_B1	SINE	B4	chr5	134592704	134592706	+	ENSMUST00000200767.1,ENSMUSG00000023104.9	Rfc2	ENSMUSG00000023104.9	ENSMUST00000200767.1	protein_coding	chr5:134592705-134595312
chr5	134639432	134639537	+	GC_rich	Low_complexity	Low_complexity	chr5	134639489	134639491	-	ENSMUST00000202622.3,ENSMUSG00000040731.13	Eif4h	ENSMUSG00000040731.13	ENSMUST00000202622.3	protein_coding	chr5:134619721-134639490
chr5	134725287	134725516	-	URR1A	DNA	hAT-Charlie	chr5	134725299	134725301	-	ENSMUST00000202570.3,ENSMUSG00000029675.12	Eln	ENSMUSG00000029675.12	ENSMUST00000202570.3	protein_coding	chr5:134702838-134725300
chr5	134747320	134747372	+	G-rich	Low_complexity	Low_complexity	chr5	134747322	134747324	-	ENSMUST00000015138.12,ENSMUSG00000029675.12	Eln	ENSMUSG00000029675.12	ENSMUST00000015138.12	protein_coding	chr5:134702593-134747323
chr5	134931321	134931634	+	MRLTR33	LTR	ERVK	chr5	134931468	134931470	-	ENSMUST00000202228.1,ENSMUSG00000107005.1	9030607J07Rik	ENSMUSG00000107005.1	ENSMUST00000202228.1	TEC	chr5:134929848-134931469
chr5	135056548	135056832	-	B4	SINE	B4	chr5	135056726	135056728	-	ENSMUST00000147756.7,ENSMUSG00000005378.17	Bud23	ENSMUSG00000005378.17	ENSMUST00000147756.7	protein_coding	chr5:135053287-135056727
chr5	135063739	135063786	+	(CA)n	Simple_repeat	Simple_repeat	chr5	135063763	135063765	-	ENSMUST00000148549.1,ENSMUSG00000005378.17	Bud23	ENSMUSG00000005378.17	ENSMUST00000148549.1	protein_coding	chr5:135059195-135063764
chr5	135078245	135078283	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr5	135078265	135078267	-	ENSMUST00000067935.10,ENSMUSG00000043614.13	Vps37d	ENSMUSG00000043614.13	ENSMUST00000067935.10	protein_coding	chr5:135072900-135078266
chr5	135078245	135078283	+	(CTCCG)n	Simple_repeat	Simple_repeat	chr5	135078265	135078267	-	ENSMUST00000076203.2,ENSMUSG00000043614.13	Vps37d	ENSMUSG00000043614.13	ENSMUST00000076203.2	protein_coding	chr5:135072903-135078266
chr5	135123252	135123303	+	(CAAAAA)n	Simple_repeat	Simple_repeat	chr5	135123292	135123294	-	ENSMUST00000201067.1,ENSMUSG00000107296.1	Gm43500	ENSMUSG00000107296.1	ENSMUST00000201067.1	antisense	chr5:135122410-135123293
chr5	135179544	135179691	-	B1_Mm	SINE	Alu	chr5	135179581	135179583	+	ENSMUST00000145329.1,ENSMUSG00000029681.12	Bcl7b	ENSMUSG00000029681.12	ENSMUST00000145329.1	protein_coding	chr5:135179582-135181125
chr5	135208313	135208518	-	B3	SINE	B2	chr5	135208407	135208409	+	ENSMUST00000142307.1,ENSMUSG00000002748.7	Baz1b	ENSMUSG00000002748.7	ENSMUST00000142307.1	protein_coding	chr5:135208408-135218057
chr5	135370908	135371050	-	B1_Mur4	SINE	Alu	chr5	135370926	135370928	+	ENSMUST00000141867.1,ENSMUSG00000000916.15	Nsun5	ENSMUSG00000000916.15	ENSMUST00000141867.1	protein_coding	chr5:135370927-135374084
chr5	135373531	135373715	+	B3A	SINE	B2	chr5	135373641	135373643	+	ENSMUST00000131863.7,ENSMUSG00000000916.15	Nsun5	ENSMUSG00000000916.15	ENSMUST00000131863.7	protein_coding	chr5:135373642-135376805
chr5	135452441	135452570	+	B2_Mm2	SINE	B2	chr5	135452517	135452519	-	ENSMUST00000202236.1,ENSMUSG00000039959.13	Hip1	ENSMUSG00000039959.13	ENSMUST00000202236.1	protein_coding	chr5:135438534-135452518
chr5	135473377	135473488	-	L2	LINE	L2	chr5	135473418	135473420	-	ENSMUST00000201839.1,ENSMUSG00000106758.1	Gm42731	ENSMUSG00000106758.1	ENSMUST00000201839.1	TEC	chr5:135471779-135473419
chr5	135617299	135617401	+	RSINE1	SINE	B4	chr5	135617298	135617300	-	ENSMUST00000201893.1,ENSMUSG00000107029.1	Gm43123	ENSMUSG00000107029.1	ENSMUST00000201893.1	TEC	chr5:135613829-135617299
chr5	135636418	135636567	+	MIR3	SINE	MIR	chr5	135636531	135636533	+	ENSMUST00000084599.3,ENSMUSG00000039917.10	Rhbdd2	ENSMUSG00000039917.10	ENSMUST00000084599.3	protein_coding	chr5:135636532-135644527
chr5	135672860	135673007	-	B1F	SINE	Alu	chr5	135672986	135672988	-	ENSMUST00000198157.1,ENSMUSG00000105239.1	Gm43091	ENSMUSG00000105239.1	ENSMUST00000198157.1	lincRNA	chr5:135653810-135672987
chr5	135817921	135818116	-	B2_Mm2	SINE	B2	chr5	135818105	135818107	+	ENSMUST00000013615.13,ENSMUSG00000039860.19	Srrm3	ENSMUSG00000039860.19	ENSMUST00000013615.13	protein_coding	chr5:135818106-135873109
chr5	135817921	135818116	-	B2_Mm2	SINE	B2	chr5	135818105	135818107	+	ENSMUST00000144211.1,ENSMUSG00000039860.19	Srrm3	ENSMUSG00000039860.19	ENSMUST00000144211.1	protein_coding	chr5:135818106-135874772
chr5	135837292	135837407	+	B1_Mur4	SINE	Alu	chr5	135837371	135837373	-	ENSMUST00000175494.2,ENSMUSG00000094486.1	Gm23268	ENSMUSG00000094486.1	ENSMUST00000175494.2	miRNA	chr5:135837295-135837372
chr5	135844749	135844976	+	B3	SINE	B2	chr5	135844945	135844947	-	ENSMUST00000131896.1,ENSMUSG00000085026.1	Srrm3os	ENSMUSG00000085026.1	ENSMUST00000131896.1	antisense	chr5:135843057-135844946
chr5	135875656	135875763	+	U6	snRNA	snRNA	chr5	135875656	135875658	+	ENSMUST00000179641.1,ENSMUSG00000095502.1	Gm22450	ENSMUSG00000095502.1	ENSMUST00000179641.1	snRNA	chr5:135875657-135875763
chr5	136110921	136111014	+	B1F	SINE	Alu	chr5	136110931	136110933	+	ENSMUST00000130598.1,ENSMUSG00000004952.13	Rasa4	ENSMUSG00000004952.13	ENSMUST00000130598.1	protein_coding	chr5:136110932-136111530
chr5	136121657	136121711	-	ID4_	SINE	ID	chr5	136121669	136121671	-	ENSMUST00000199799.1,ENSMUSG00000105349.1	Gm43604	ENSMUSG00000105349.1	ENSMUST00000199799.1	antisense	chr5:136120966-136121670
chr5	136125529	136126246	+	RodERV21-int	LTR	ERV1	chr5	136125558	136125560	-	ENSMUST00000142272.1,ENSMUSG00000029703.10	Lrwd1	ENSMUSG00000029703.10	ENSMUST00000142272.1	protein_coding	chr5:136123075-136125559
chr5	136170605	136170633	+	GC_rich	Low_complexity	Low_complexity	chr5	136170627	136170629	-	ENSMUST00000196454.4,ENSMUSG00000039747.11	Orai2	ENSMUSG00000039747.11	ENSMUST00000196454.4	protein_coding	chr5:136147464-136170628
chr5	136170605	136170633	+	GC_rich	Low_complexity	Low_complexity	chr5	136170632	136170634	-	ENSMUST00000198268.1,ENSMUSG00000039747.11	Orai2	ENSMUSG00000039747.11	ENSMUST00000198268.1	protein_coding	chr5:136166306-136170633
chr5	136222656	136222679	+	(TCCC)n	Simple_repeat	Simple_repeat	chr5	136222661	136222663	-	ENSMUST00000197324.1,ENSMUSG00000005057.13	Sh2b2	ENSMUSG00000005057.13	ENSMUST00000197324.1	protein_coding	chr5:136220367-136222662
chr5	136692957	136693168	-	MTEb	LTR	ERVL-MaLR	chr5	136693145	136693147	+	ENSMUST00000196068.4,ENSMUSG00000005474.9	Myl10	ENSMUSG00000005474.9	ENSMUST00000196068.4	protein_coding	chr5:136693146-136701094
chr5	136693459	136693839	-	MTEb	LTR	ERVL-MaLR	chr5	136693675	136693677	+	ENSMUST00000196436.4,ENSMUSG00000005474.9	Myl10	ENSMUSG00000005474.9	ENSMUST00000196436.4	protein_coding	chr5:136693676-136701094
chr5	136697700	136697853	+	ZP3AR	Satellite	Satellite	chr5	136697778	136697780	+	ENSMUST00000199074.4,ENSMUSG00000005474.9	Myl10	ENSMUSG00000005474.9	ENSMUST00000199074.4	protein_coding	chr5:136697779-136701094
chr5	136697700	136697853	+	ZP3AR	Satellite	Satellite	chr5	136697829	136697831	+	ENSMUST00000197849.1,ENSMUSG00000005474.9	Myl10	ENSMUSG00000005474.9	ENSMUST00000197849.1	protein_coding	chr5:136697830-136701092
chr5	136747632	136747793	+	MIRb	SINE	MIR	chr5	136747700	136747702	-	ENSMUST00000125061.1,ENSMUSG00000004415.15	Col26a1	ENSMUSG00000004415.15	ENSMUST00000125061.1	protein_coding	chr5:136743074-136747701
chr5	136838181	136838363	+	HAL1	LINE	L1	chr5	136838308	136838310	-	ENSMUST00000196053.1,ENSMUSG00000004415.15	Col26a1	ENSMUSG00000004415.15	ENSMUST00000196053.1	protein_coding	chr5:136835808-136838309
chr5	136988020	136988042	+	(TG)n	Simple_repeat	Simple_repeat	chr5	136988020	136988022	-	ENSMUST00000156963.7,ENSMUSG00000059518.14	Znhit1	ENSMUSG00000059518.14	ENSMUST00000156963.7	protein_coding	chr5:136982164-136988021
chr5	137037628	137037818	-	ID_B1	SINE	B4	chr5	137037649	137037651	-	ENSMUST00000154183.1,ENSMUSG00000004849.14	Ap1s1	ENSMUSG00000004849.14	ENSMUST00000154183.1	protein_coding	chr5:137035342-137037650
chr5	137138949	137139216	+	ORR1E	LTR	ERVL-MaLR	chr5	137139126	137139128	-	ENSMUST00000160630.1,ENSMUSG00000037390.12	Muc3	ENSMUSG00000037390.12	ENSMUST00000160630.1	protein_coding	chr5:137134961-137139127
chr5	137189160	137189207	+	(A)n	Simple_repeat	Simple_repeat	chr5	137189166	137189168	-	ENSMUST00000199527.1,ENSMUSG00000106190.1	Gm20768	ENSMUSG00000106190.1	ENSMUST00000199527.1	processed_pseudogene	chr5:137186830-137189167
chr5	137288162	137288278	+	G-rich	Low_complexity	Low_complexity	chr5	137288276	137288278	+	ENSMUST00000024099.10,ENSMUSG00000023328.14	Ache	ENSMUSG00000023328.14	ENSMUST00000024099.10	protein_coding	chr5:137288277-137294466
chr5	137401728	137401846	+	B1_Mur2	SINE	Alu	chr5	137401737	137401739	-	ENSMUST00000197503.1,ENSMUSG00000079173.11	Zan	ENSMUSG00000079173.11	ENSMUST00000197503.1	protein_coding	chr5:137398534-137401738
chr5	137450604	137450718	+	RSINE1	SINE	B4	chr5	137450622	137450624	-	ENSMUST00000130056.1,ENSMUSG00000079173.11	Zan	ENSMUSG00000079173.11	ENSMUST00000130056.1	protein_coding	chr5:137435869-137450623
chr5	137476874	137477149	+	HAL1	LINE	L1	chr5	137477063	137477065	-	ENSMUST00000117564.7,ENSMUSG00000079173.11	Zan	ENSMUSG00000079173.11	ENSMUST00000117564.7	protein_coding	chr5:137378637-137477064
chr5	137510216	137510396	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	137510252	137510254	+	ENSMUST00000197762.1,ENSMUSG00000106237.1	Gm8066	ENSMUSG00000106237.1	ENSMUST00000197762.1	lincRNA	chr5:137510253-137517501
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553537	137553539	+	ENSMUST00000145500.1,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000145500.1	protein_coding	chr5:137553538-137554346
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553537	137553539	+	ENSMUST00000198601.1,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000198601.1	protein_coding	chr5:137553538-137566644
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553538	137553540	+	ENSMUST00000136565.7,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000136565.7	protein_coding	chr5:137553539-137565778
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553554	137553556	+	ENSMUST00000149292.7,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000149292.7	protein_coding	chr5:137553555-137554677
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553554	137553556	+	ENSMUST00000125489.1,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000125489.1	protein_coding	chr5:137553555-137555032
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553556	137553558	+	ENSMUST00000196154.1,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000196154.1	protein_coding	chr5:137553557-137556656
chr5	137553528	137553557	+	GC_rich	Low_complexity	Low_complexity	chr5	137553556	137553558	+	ENSMUST00000031725.9,ENSMUSG00000029712.14	Actl6b	ENSMUSG00000029712.14	ENSMUST00000031725.9	protein_coding	chr5:137553557-137569557
chr5	137611365	137611401	+	(CAG)n	Simple_repeat	Simple_repeat	chr5	137611375	137611377	-	ENSMUST00000054564.12,ENSMUSG00000029718.14	Pcolce	ENSMUSG00000029718.14	ENSMUST00000054564.12	protein_coding	chr5:137605108-137611376
chr5	137661653	137661797	+	B1_Mur3	SINE	Alu	chr5	137661761	137661763	-	ENSMUST00000147518.1,ENSMUSG00000029722.15	Agfg2	ENSMUSG00000029722.15	ENSMUST00000147518.1	protein_coding	chr5:137650859-137661762
chr5	137792590	137792738	-	B1_Mus1	SINE	Alu	chr5	137792665	137792667	+	ENSMUST00000200505.1,ENSMUSG00000037108.13	Zcwpw1	ENSMUSG00000037108.13	ENSMUST00000200505.1	protein_coding	chr5:137792666-137795876
chr5	137831361	137831882	+	MLTR14	LTR	ERV1	chr5	137831509	137831511	-	ENSMUST00000130460.1,ENSMUSG00000046245.13	Pilra	ENSMUSG00000046245.13	ENSMUST00000130460.1	protein_coding	chr5:137823383-137831510
chr5	138161086	138161163	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	138161099	138161101	+	ENSMUST00000110951.7,ENSMUSG00000019494.14	Cops6	ENSMUSG00000019494.14	ENSMUST00000110951.7	protein_coding	chr5:138161100-138163978
chr5	138161086	138161163	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	138161108	138161110	+	ENSMUST00000127881.7,ENSMUSG00000019494.14	Cops6	ENSMUSG00000019494.14	ENSMUST00000127881.7	protein_coding	chr5:138161109-138162384
chr5	138176471	138176590	-	B1_Mus1	SINE	Alu	chr5	138176568	138176570	+	ENSMUST00000134100.1,ENSMUSG00000019518.11	Ap4m1	ENSMUSG00000019518.11	ENSMUST00000134100.1	protein_coding	chr5:138176569-138178687
chr5	138181321	138181468	+	B1_Mus2	SINE	Alu	chr5	138181467	138181469	-	ENSMUST00000130473.1,ENSMUSG00000036980.13	Taf6	ENSMUSG00000036980.13	ENSMUST00000130473.1	protein_coding	chr5:138180148-138181468
chr5	138187485	138187508	+	AT_rich	Low_complexity	Low_complexity	chr5	138187484	138187486	+	ENSMUST00000110934.8,ENSMUSG00000036968.15	Cnpy4	ENSMUSG00000036968.15	ENSMUST00000110934.8	protein_coding	chr5:138187485-138193918
chr5	138189983	138190176	-	MIR	SINE	MIR	chr5	138190111	138190113	+	ENSMUST00000130126.1,ENSMUSG00000036968.15	Cnpy4	ENSMUSG00000036968.15	ENSMUST00000130126.1	protein_coding	chr5:138190112-138192151
chr5	138219736	138219802	+	U4	snRNA	snRNA	chr5	138219736	138219738	+	ENSMUST00000122520.1,ENSMUSG00000084469.1	Gm22956	ENSMUSG00000084469.1	ENSMUST00000122520.1	snRNA	chr5:138219737-138219816
chr5	138225761	138225959	-	ID_B1	SINE	B4	chr5	138225897	138225899	+	ENSMUST00000162519.1,ENSMUSG00000047592.17	Nxpe5	ENSMUSG00000047592.17	ENSMUST00000162519.1	protein_coding	chr5:138225898-138239672
chr5	138225761	138225959	-	ID_B1	SINE	B4	chr5	138225903	138225905	+	ENSMUST00000110929.8,ENSMUSG00000047592.17	Nxpe5	ENSMUSG00000047592.17	ENSMUST00000110929.8	protein_coding	chr5:138225904-138251875
chr5	138225761	138225959	-	ID_B1	SINE	B4	chr5	138225903	138225905	+	ENSMUST00000161047.7,ENSMUSG00000047592.17	Nxpe5	ENSMUSG00000047592.17	ENSMUST00000161047.7	protein_coding	chr5:138225904-138251876
chr5	138378590	138378697	+	U6	snRNA	snRNA	chr5	138378590	138378592	+	ENSMUST00000177701.1,ENSMUSG00000093932.1	Gm25525	ENSMUSG00000093932.1	ENSMUST00000177701.1	snRNA	chr5:138378591-138378697
chr5	138606354	138607160	-	MMSAT4	Satellite	Satellite	chr5	138607056	138607058	-	ENSMUST00000197654.1,ENSMUSG00000058291.14	Zfp68	ENSMUSG00000058291.14	ENSMUST00000197654.1	protein_coding	chr5:138606116-138607057
chr5	138606354	138607160	-	MMSAT4	Satellite	Satellite	chr5	138606698	138606700	+	ENSMUST00000175175.1,ENSMUSG00000092916.1	Gm24082	ENSMUSG00000092916.1	ENSMUST00000175175.1	miRNA	chr5:138606699-138606781
chr5	139129727	139129802	+	GC_rich	Low_complexity	Low_complexity	chr5	139129758	139129760	-	ENSMUST00000026973.13,ENSMUSG00000025855.13	Prkar1b	ENSMUSG00000025855.13	ENSMUST00000026973.13	protein_coding	chr5:139017306-139129759
chr5	139303094	139303365	+	ZP3AR	Satellite	Satellite	chr5	139303149	139303151	-	ENSMUST00000196271.4,ENSMUSG00000056413.16	Adap1	ENSMUSG00000056413.16	ENSMUST00000196271.4	protein_coding	chr5:139272776-139303150
chr5	139306289	139306761	+	ZP3AR	Satellite	Satellite	chr5	139306318	139306320	-	ENSMUST00000151450.7,ENSMUSG00000056413.16	Adap1	ENSMUSG00000056413.16	ENSMUST00000151450.7	protein_coding	chr5:139271876-139306319
chr5	139306289	139306761	+	ZP3AR	Satellite	Satellite	chr5	139306290	139306292	-	ENSMUST00000126762.7,ENSMUSG00000056413.16	Adap1	ENSMUSG00000056413.16	ENSMUST00000126762.7	protein_coding	chr5:139272858-139306291
chr5	139312423	139312569	+	B1_Mus1	SINE	Alu	chr5	139312423	139312425	+	ENSMUST00000184884.1,ENSMUSG00000098690.1	Gm27316	ENSMUSG00000098690.1	ENSMUST00000184884.1	misc_RNA	chr5:139312424-139312700
chr5	139351388	139351452	+	L2a	LINE	L2	chr5	139351417	139351419	-	ENSMUST00000198966.4,ENSMUSG00000045438.12	Cox19	ENSMUSG00000045438.12	ENSMUST00000198966.4	protein_coding	chr5:139338221-139351418
chr5	139443598	139443705	+	U6	snRNA	snRNA	chr5	139443598	139443600	+	ENSMUST00000177923.1,ENSMUSG00000095016.1	Gm26285	ENSMUSG00000095016.1	ENSMUST00000177923.1	snRNA	chr5:139443599-139443705
chr5	139523701	139524097	+	ORR1F	LTR	ERVL-MaLR	chr5	139523748	139523750	+	ENSMUST00000198000.1,ENSMUSG00000106056.1	4930500L23Rik	ENSMUSG00000106056.1	ENSMUST00000198000.1	lincRNA	chr5:139523749-139541339
chr5	139844929	139845190	+	7SK	RNA	RNA	chr5	139844929	139844931	+	ENSMUST00000082760.1,ENSMUSG00000064694.1	Gm24146	ENSMUSG00000064694.1	ENSMUST00000082760.1	misc_RNA	chr5:139844930-139845250
chr5	139908380	139908486	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	139908473	139908475	+	ENSMUST00000198608.1,ENSMUSG00000048988.8	Elfn1	ENSMUSG00000048988.8	ENSMUST00000198608.1	protein_coding	chr5:139908474-139971050
chr5	140151218	140151640	+	MT2A	LTR	ERVL	chr5	140151486	140151488	-	ENSMUST00000200614.1,ENSMUSG00000106497.1	Gm43195	ENSMUSG00000106497.1	ENSMUST00000200614.1	TEC	chr5:140149156-140151487
chr5	140323635	140323906	+	MLTR14	LTR	ERV1	chr5	140323843	140323845	-	ENSMUST00000198617.1,ENSMUSG00000105679.1	Gm43338	ENSMUSG00000105679.1	ENSMUST00000198617.1	TEC	chr5:140321622-140323844
chr5	140636392	140636601	+	B3	SINE	B2	chr5	140636466	140636468	-	ENSMUST00000198704.1,ENSMUSG00000036565.7	Ttyh3	ENSMUSG00000036565.7	ENSMUST00000198704.1	protein_coding	chr5:140631518-140636467
chr5	140648944	140649002	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr5	140648996	140648998	-	ENSMUST00000200302.1,ENSMUSG00000036565.7	Ttyh3	ENSMUSG00000036565.7	ENSMUST00000200302.1	protein_coding	chr5:140648471-140648997
chr5	140649004	140649155	+	C-rich	Low_complexity	Low_complexity	chr5	140649024	140649026	-	ENSMUST00000197452.4,ENSMUSG00000036565.7	Ttyh3	ENSMUSG00000036565.7	ENSMUST00000197452.4	protein_coding	chr5:140620578-140649025
chr5	140649004	140649155	+	C-rich	Low_complexity	Low_complexity	chr5	140649030	140649032	-	ENSMUST00000042661.7,ENSMUSG00000036565.7	Ttyh3	ENSMUSG00000036565.7	ENSMUST00000042661.7	protein_coding	chr5:140620578-140649031
chr5	141029904	141029970	+	(TATATG)n	Simple_repeat	Simple_repeat	chr5	141029927	141029929	+	ENSMUST00000198781.1,ENSMUSG00000104683.1	Gm44385	ENSMUSG00000104683.1	ENSMUST00000198781.1	miRNA	chr5:141029928-141030008
chr5	141080393	141080455	-	B4	SINE	B4	chr5	141080430	141080432	+	ENSMUST00000175603.1,ENSMUSG00000093344.1	Gm26113	ENSMUSG00000093344.1	ENSMUST00000175603.1	miRNA	chr5:141080431-141080509
chr5	141241376	141241561	+	G-rich	Low_complexity	Low_complexity	chr5	141241489	141241491	+	ENSMUST00000085774.10,ENSMUSG00000039683.16	Sdk1	ENSMUSG00000039683.16	ENSMUST00000085774.10	protein_coding	chr5:141241490-142215586
chr5	141241798	141241926	+	GC_rich	Low_complexity	Low_complexity	chr5	141241917	141241919	+	ENSMUST00000129831.1,ENSMUSG00000039683.16	Sdk1	ENSMUSG00000039683.16	ENSMUST00000129831.1	protein_coding	chr5:141241918-141582504
chr5	141317899	141318701	-	L1MD1	LINE	L1	chr5	141318133	141318135	-	ENSMUST00000197100.1,ENSMUSG00000105212.1	Gm43557	ENSMUSG00000105212.1	ENSMUST00000197100.1	TEC	chr5:141315765-141318134
chr5	141566147	141566249	-	U6	snRNA	snRNA	chr5	141566248	141566250	-	ENSMUST00000158539.1,ENSMUSG00000089164.1	Gm24131	ENSMUSG00000089164.1	ENSMUST00000158539.1	snRNA	chr5:141566143-141566249
chr5	142582831	142582891	+	B3	SINE	B2	chr5	142582867	142582869	-	ENSMUST00000195947.1,ENSMUSG00000039533.8	Mmd2	ENSMUSG00000039533.8	ENSMUST00000195947.1	protein_coding	chr5:142580993-142582868
chr5	142627516	142627780	-	Lx8b	LINE	L1	chr5	142627697	142627699	+	ENSMUST00000197864.1,ENSMUSG00000029578.15	Wipi2	ENSMUSG00000029578.15	ENSMUST00000197864.1	protein_coding	chr5:142627698-142630490
chr5	142817662	142817686	+	(A)n	Simple_repeat	Simple_repeat	chr5	142817661	142817663	-	ENSMUST00000151477.7,ENSMUSG00000039477.16	Tnrc18	ENSMUSG00000039477.16	ENSMUST00000151477.7	protein_coding	chr5:142754789-142817662
chr5	142895368	142895432	+	L2	LINE	L2	chr5	142895420	142895422	-	ENSMUST00000110766.7,ENSMUSG00000066640.11	Fbxl18	ENSMUSG00000066640.11	ENSMUST00000110766.7	protein_coding	chr5:142866946-142895421
chr5	142895368	142895432	+	L2	LINE	L2	chr5	142895420	142895422	-	ENSMUST00000156725.1,ENSMUSG00000066640.11	Fbxl18	ENSMUSG00000066640.11	ENSMUST00000156725.1	protein_coding	chr5:142882419-142895421
chr5	142903629	142903678	+	(A)n	Simple_repeat	Simple_repeat	chr5	142903653	142903655	-	ENSMUST00000196997.1,ENSMUSG00000029580.14	Actb	ENSMUSG00000029580.14	ENSMUST00000196997.1	protein_coding	chr5:142903234-142903654
chr5	143227678	143228044	-	MTE2a	LTR	ERVL-MaLR	chr5	143227717	143227719	+	ENSMUST00000159838.1,ENSMUSG00000089879.1	4930448H16Rik	ENSMUSG00000089879.1	ENSMUST00000159838.1	lincRNA	chr5:143227718-143234748
chr5	143239971	143240085	+	MurSatRep1	Unknown	Unknown	chr5	143240038	143240040	+	ENSMUST00000160195.1,ENSMUSG00000029587.16	Zfp12	ENSMUSG00000029587.16	ENSMUST00000160195.1	protein_coding	chr5:143240039-143244630
chr5	143314898	143315106	-	Charlie17b	DNA	hAT-Charlie	chr5	143315063	143315065	-	ENSMUST00000159406.7,ENSMUSG00000039244.10	E130309D02Rik	ENSMUSG00000039244.10	ENSMUST00000159406.7	protein_coding	chr5:143301195-143315064
chr5	143334512	143334777	+	MTEa	LTR	ERVL-MaLR	chr5	143334634	143334636	+	ENSMUST00000196422.1,ENSMUSG00000104875.1	Gm43397	ENSMUSG00000104875.1	ENSMUST00000196422.1	lincRNA	chr5:143334635-143335425
chr5	143395464	143395509	+	(GGA)n	Simple_repeat	Simple_repeat	chr5	143395502	143395504	+	ENSMUST00000196584.1,ENSMUSG00000105594.1	Gm43398	ENSMUSG00000105594.1	ENSMUST00000196584.1	TEC	chr5:143395503-143398244
chr5	143397391	143397578	+	MLT1K	LTR	ERVL-MaLR	chr5	143397456	143397458	-	ENSMUST00000198312.1,ENSMUSG00000106198.1	Gm42504	ENSMUSG00000106198.1	ENSMUST00000198312.1	lincRNA	chr5:143393689-143397457
chr5	143472910	143472935	+	(T)n	Simple_repeat	Simple_repeat	chr5	143472916	143472918	+	ENSMUST00000199577.1,ENSMUSG00000039206.13	Daglb	ENSMUSG00000039206.13	ENSMUST00000199577.1	protein_coding	chr5:143472917-143477793
chr5	143486542	143487066	+	RLTR21	LTR	ERVK	chr5	143486677	143486679	+	ENSMUST00000155383.1,ENSMUSG00000039206.13	Daglb	ENSMUSG00000039206.13	ENSMUST00000155383.1	protein_coding	chr5:143486678-143489994
chr5	143651113	143651401	+	MLT1A0	LTR	ERVL-MaLR	chr5	143651240	143651242	+	ENSMUST00000110727.1,ENSMUSG00000018001.18	Cyth3	ENSMUSG00000018001.18	ENSMUST00000110727.1	protein_coding	chr5:143651241-143708256
chr5	143732267	143732379	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	143732279	143732281	-	ENSMUST00000053287.5,ENSMUSG00000051306.7	Usp42	ENSMUSG00000051306.7	ENSMUST00000053287.5	protein_coding	chr5:143710325-143732280
chr5	143763909	143764279	+	MER74B	LTR	ERVL	chr5	143764103	143764105	+	ENSMUST00000199836.1,ENSMUSG00000097287.3	D130017N08Rik	ENSMUSG00000097287.3	ENSMUST00000199836.1	lincRNA	chr5:143764104-143767131
chr5	144013997	144014101	+	U6	snRNA	snRNA	chr5	144013997	144013999	+	ENSMUST00000082570.2,ENSMUSG00000093856.1	Gm24311	ENSMUSG00000093856.1	ENSMUST00000082570.2	snRNA	chr5:144013998-144014101
chr5	144215645	144215700	+	(CCCA)n	Simple_repeat	Simple_repeat	chr5	144215658	144215660	-	ENSMUST00000153751.7,ENSMUSG00000066621.12	Tecpr1	ENSMUSG00000066621.12	ENSMUST00000153751.7	protein_coding	chr5:144209458-144215659
chr5	144277061	144277141	+	RSINE1	SINE	B4	chr5	144277060	144277062	+	ENSMUST00000156467.1,ENSMUSG00000086894.2	Gm15708	ENSMUSG00000086894.2	ENSMUST00000156467.1	sense_intronic	chr5:144277061-144280513
chr5	144278860	144278880	+	(T)n	Simple_repeat	Simple_repeat	chr5	144278874	144278876	+	ENSMUST00000198873.1,ENSMUSG00000086894.2	Gm15708	ENSMUSG00000086894.2	ENSMUST00000198873.1	sense_intronic	chr5:144278875-144280479
chr5	144761773	144761994	-	B4A	SINE	B4	chr5	144761817	144761819	-	ENSMUST00000197254.1,ENSMUSG00000043388.8	Tmem130	ENSMUSG00000043388.8	ENSMUST00000197254.1	protein_coding	chr5:144752288-144761818
chr5	144767698	144767744	+	ID	SINE	ID	chr5	144767731	144767733	+	ENSMUST00000197741.1,ENSMUSG00000045482.16	Trrap	ENSMUSG00000045482.16	ENSMUST00000197741.1	protein_coding	chr5:144767732-144768691
chr5	144838905	144839021	-	B1_Mur1	SINE	Alu	chr5	144838984	144838986	+	ENSMUST00000124909.1,ENSMUSG00000045482.16	Trrap	ENSMUSG00000045482.16	ENSMUST00000124909.1	protein_coding	chr5:144838985-144840444
chr5	144965742	144965864	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	144965838	144965840	-	ENSMUST00000110677.7,ENSMUSG00000038780.14	Smurf1	ENSMUSG00000038780.14	ENSMUST00000110677.7	protein_coding	chr5:144876495-144965839
chr5	144965742	144965864	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	144965846	144965848	-	ENSMUST00000085684.10,ENSMUSG00000038780.14	Smurf1	ENSMUSG00000038780.14	ENSMUST00000085684.10	protein_coding	chr5:144876502-144965847
chr5	144965742	144965864	+	(CCG)n	Simple_repeat	Simple_repeat	chr5	144965846	144965848	-	ENSMUST00000100461.6,ENSMUSG00000038780.14	Smurf1	ENSMUSG00000038780.14	ENSMUST00000100461.6	protein_coding	chr5:144879111-144965847
chr5	145009447	145009717	+	RMER10B	LTR	ERVL	chr5	145009632	145009634	-	ENSMUST00000110672.7,ENSMUSG00000038770.17	Kpna7	ENSMUSG00000038770.17	ENSMUST00000110672.7	protein_coding	chr5:144983727-145009633
chr5	145139987	145140013	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	145139997	145139999	-	ENSMUST00000148781.1,ENSMUSG00000029623.14	Pdap1	ENSMUSG00000029623.14	ENSMUST00000148781.1	protein_coding	chr5:145136578-145139998
chr5	145167234	145167264	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	145167246	145167248	+	ENSMUST00000160422.7,ENSMUSG00000029625.16	Cpsf4	ENSMUSG00000029625.16	ENSMUST00000160422.7	protein_coding	chr5:145167247-145182040
chr5	145167234	145167264	+	(CGG)n	Simple_repeat	Simple_repeat	chr5	145167253	145167255	+	ENSMUST00000162244.7,ENSMUSG00000029625.16	Cpsf4	ENSMUSG00000029625.16	ENSMUST00000162244.7	protein_coding	chr5:145167254-145181753
chr5	145208559	145209097	+	MLTR31FA_MM	LTR	ERVK	chr5	145208567	145208569	+	ENSMUST00000160162.1,ENSMUSG00000055991.15	Zkscan5	ENSMUSG00000055991.15	ENSMUST00000160162.1	protein_coding	chr5:145208568-145218296
chr5	145266377	145266887	-	RLTR1A2_MM	LTR	ERV1	chr5	145266376	145266378	-	ENSMUST00000198053.1,ENSMUSG00000106188.1	Gm9710	ENSMUSG00000106188.1	ENSMUST00000198053.1	processed_pseudogene	chr5:145265879-145266377
chr5	145292740	145293142	-	RLTR10C	LTR	ERVK	chr5	145292769	145292771	+	ENSMUST00000197174.1,ENSMUSG00000104682.1	Gm42636	ENSMUSG00000104682.1	ENSMUST00000197174.1	TEC	chr5:145292770-145295008
chr5	145506616	145511998	+	L1Md_A	LINE	L1	chr5	145507053	145507055	-	ENSMUST00000197875.1,ENSMUSG00000105270.1	Gm42863	ENSMUSG00000105270.1	ENSMUST00000197875.1	TEC	chr5:145504097-145507054
chr5	145991582	145992138	+	Lx9	LINE	L1	chr5	145991642	145991644	-	ENSMUST00000153808.1,ENSMUSG00000029630.15	Cyp3a25	ENSMUSG00000029630.15	ENSMUST00000153808.1	protein_coding	chr5:145984957-145991643
chr5	146204751	146204811	+	MT2B1	LTR	ERVL	chr5	146204788	146204790	-	ENSMUST00000199177.1,ENSMUSG00000105636.1	Gm43625	ENSMUSG00000105636.1	ENSMUST00000199177.1	lincRNA	chr5:146203251-146204789
chr5	146231181	146231245	+	(TCC)n	Simple_repeat	Simple_repeat	chr5	146231229	146231231	+	ENSMUST00000162494.7,ENSMUSG00000029635.15	Cdk8	ENSMUSG00000029635.15	ENSMUST00000162494.7	protein_coding	chr5:146231230-146302874
chr5	146248440	146249445	+	MMAR1	DNA	TcMar-Mariner	chr5	146248550	146248552	+	ENSMUST00000118049.1,ENSMUSG00000080957.1	Gm15739	ENSMUSG00000080957.1	ENSMUST00000118049.1	processed_pseudogene	chr5:146248551-146249422
chr5	147105350	147105460	+	B1F	SINE	Alu	chr5	147105365	147105367	+	ENSMUST00000196288.1,ENSMUSG00000029642.11	Polr1d	ENSMUSG00000029642.11	ENSMUST00000196288.1	protein_coding	chr5:147105366-147110986
chr5	147418464	147418773	+	ORR1E	LTR	ERVL-MaLR	chr5	147418600	147418602	+	ENSMUST00000201128.1,ENSMUSG00000106820.1	D5Ertd605e	ENSMUSG00000106820.1	ENSMUST00000201128.1	lincRNA	chr5:147418601-147423044
chr5	147451742	147451938	-	B2_Mm1t	SINE	B2	chr5	147451743	147451745	+	ENSMUST00000201799.1,ENSMUSG00000029647.15	Pan3	ENSMUSG00000029647.15	ENSMUST00000201799.1	protein_coding	chr5:147451744-147454109
chr5	147517388	147517553	-	B2_Mm1t	SINE	B2	chr5	147517501	147517503	+	ENSMUST00000201248.1,ENSMUSG00000029647.15	Pan3	ENSMUSG00000029647.15	ENSMUST00000201248.1	protein_coding	chr5:147517502-147521250
chr5	147646769	147646817	+	(TG)n	Simple_repeat	Simple_repeat	chr5	147646806	147646808	-	ENSMUST00000200895.1,ENSMUSG00000029648.13	Flt1	ENSMUSG00000029648.13	ENSMUST00000200895.1	protein_coding	chr5:147644778-147646807
chr5	147745285	147745543	-	RLTR10D	LTR	ERVK	chr5	147745515	147745517	+	ENSMUST00000202338.1,ENSMUSG00000106845.1	Gm43156	ENSMUSG00000106845.1	ENSMUST00000202338.1	lincRNA	chr5:147745516-147749176
chr5	148303032	148303211	-	Lx9	LINE	L1	chr5	148303164	148303166	+	ENSMUST00000152105.7,ENSMUSG00000029651.16	Mtus2	ENSMUSG00000029651.16	ENSMUST00000152105.7	protein_coding	chr5:148303165-148313460
chr5	148303032	148303211	-	Lx9	LINE	L1	chr5	148303173	148303175	+	ENSMUST00000085554.4,ENSMUSG00000029651.16	Mtus2	ENSMUSG00000029651.16	ENSMUST00000085554.4	protein_coding	chr5:148303174-148314000
chr5	148456787	148456842	+	B2_Mm2	SINE	B2	chr5	148456837	148456839	+	ENSMUST00000202977.1,ENSMUSG00000106956.1	Gm19617	ENSMUSG00000106956.1	ENSMUST00000202977.1	unprocessed_pseudogene	chr5:148456838-148457145
chr5	148956405	148956658	-	RMER6A	LTR	ERVK	chr5	148956496	148956498	-	ENSMUST00000203736.1,ENSMUSG00000108207.2	1810059H22Rik	ENSMUSG00000108207.2	ENSMUST00000203736.1	processed_transcript	chr5:148954644-148956497
chr5	148964192	148964404	+	B3A	SINE	B2	chr5	148964273	148964275	-	ENSMUST00000203691.1,ENSMUSG00000108207.2	1810059H22Rik	ENSMUSG00000108207.2	ENSMUST00000203691.1	processed_transcript	chr5:148959132-148964274
chr5	148981071	148981196	+	URR1A	DNA	hAT-Charlie	chr5	148981092	148981094	-	ENSMUST00000134031.1,ENSMUSG00000106892.1	Gm42791	ENSMUSG00000106892.1	ENSMUST00000134031.1	protein_coding	chr5:148980438-148981093
chr5	149052316	149052500	+	C-rich	Low_complexity	Low_complexity	chr5	149052376	149052378	-	ENSMUST00000138553.7,ENSMUSG00000066551.12	Hmgb1	ENSMUSG00000066551.12	ENSMUST00000138553.7	protein_coding	chr5:149049824-149052377
chr5	149123382	149123475	+	PB1D10	SINE	Alu	chr5	149123411	149123413	-	ENSMUST00000200718.1,ENSMUSG00000097191.2	5730422E09Rik	ENSMUSG00000097191.2	ENSMUST00000200718.1	lincRNA	chr5:149119569-149123412
chr5	149128221	149128946	+	RMER19A	LTR	ERVK	chr5	149128583	149128585	+	ENSMUST00000200879.1,ENSMUSG00000107133.1	Gm42787	ENSMUSG00000107133.1	ENSMUST00000200879.1	lincRNA	chr5:149128584-149129957
chr5	149191272	149191355	-	L2	LINE	L2	chr5	149191335	149191337	+	ENSMUST00000150921.1,ENSMUSG00000041264.16	Uspl1	ENSMUSG00000041264.16	ENSMUST00000150921.1	protein_coding	chr5:149191336-149215434
chr5	149230971	149231393	+	RLTR10C	LTR	ERVK	chr5	149231331	149231333	+	ENSMUST00000189493.1,ENSMUSG00000100783.1	2310047D07Rik	ENSMUSG00000100783.1	ENSMUST00000189493.1	lincRNA	chr5:149231332-149237984
chr5	149247932	149248244	-	7SLRNA	srpRNA	srpRNA	chr5	149248026	149248028	-	ENSMUST00000196719.1,ENSMUSG00000105790.1	Gm24105	ENSMUSG00000105790.1	ENSMUST00000196719.1	miRNA	chr5:149247950-149248027
chr5	149247932	149248244	-	7SLRNA	srpRNA	srpRNA	chr5	149248243	149248245	-	ENSMUST00000174933.2,ENSMUSG00000092674.2	Gm24105	ENSMUSG00000092674.2	ENSMUST00000174933.2	misc_RNA	chr5:149247952-149248244
chr5	149264620	149264791	+	GA-rich	Low_complexity	Low_complexity	chr5	149264766	149264768	+	ENSMUST00000071130.4,ENSMUSG00000060063.9	Alox5ap	ENSMUSG00000060063.9	ENSMUST00000071130.4	protein_coding	chr5:149264767-149288153
chr5	149281127	149281227	-	5S	rRNA	rRNA	chr5	149281222	149281224	-	ENSMUST00000082770.1,ENSMUSG00000064704.1	n-R5s180	ENSMUSG00000064704.1	ENSMUST00000082770.1	rRNA	chr5:149281118-149281223
chr5	149368424	149368797	-	MLT1F2	LTR	ERVL-MaLR	chr5	149368475	149368477	+	ENSMUST00000201641.1,ENSMUSG00000107314.1	Gm20488	ENSMUSG00000107314.1	ENSMUST00000201641.1	processed_transcript	chr5:149368476-149430682
chr5	149425048	149425243	-	URR1A	DNA	hAT-Charlie	chr5	149425098	149425100	-	ENSMUST00000201093.1,ENSMUSG00000106750.1	Gm43151	ENSMUSG00000106750.1	ENSMUST00000201093.1	antisense	chr5:149423363-149425099
chr5	149621158	149621244	+	B1F	SINE	Alu	chr5	149621186	149621188	-	ENSMUST00000202137.1,ENSMUSG00000029657.15	Hsph1	ENSMUSG00000029657.15	ENSMUST00000202137.1	protein_coding	chr5:149619893-149621187
chr5	149641597	149641650	+	C-rich	Low_complexity	Low_complexity	chr5	149641609	149641611	+	ENSMUST00000202583.1,ENSMUSG00000106674.1	Gm20005	ENSMUSG00000106674.1	ENSMUST00000202583.1	lincRNA	chr5:149641610-149647790
chr5	149847944	149848255	+	ORR1D1	LTR	ERVL-MaLR	chr5	149847964	149847966	+	ENSMUST00000202156.1,ENSMUSG00000107214.3	4930500F04Rik	ENSMUSG00000107214.3	ENSMUST00000202156.1	processed_transcript	chr5:149847965-149864276
chr5	149896107	149896268	-	RSINE1	SINE	B4	chr5	149896118	149896120	-	ENSMUST00000201873.1,ENSMUSG00000107093.1	Gm43452	ENSMUSG00000107093.1	ENSMUST00000201873.1	lincRNA	chr5:149895129-149896119
chr5	150080451	150080622	-	RMER17C	LTR	ERVK	chr5	150080621	150080623	+	ENSMUST00000131212.1,ENSMUSG00000053368.13	Rxfp2	ENSMUSG00000053368.13	ENSMUST00000131212.1	protein_coding	chr5:150080622-150082184
chr5	150460466	150460659	+	B2_Mm2	SINE	B2	chr5	150460645	150460647	+	ENSMUST00000202070.1,ENSMUSG00000056602.11	Fry	ENSMUSG00000056602.11	ENSMUST00000202070.1	protein_coding	chr5:150460646-150464329
chr5	150487172	150487362	-	B2_Mm2	SINE	B2	chr5	150487176	150487178	+	ENSMUST00000200750.1,ENSMUSG00000056602.11	Fry	ENSMUSG00000056602.11	ENSMUST00000200750.1	protein_coding	chr5:150487177-150489794
chr5	150490060	150490235	-	B2_Mm1t	SINE	B2	chr5	150490105	150490107	+	ENSMUST00000202571.1,ENSMUSG00000056602.11	Fry	ENSMUSG00000056602.11	ENSMUST00000202571.1	protein_coding	chr5:150490106-150491983
chr5	150528940	150529286	+	ORR1A0	LTR	ERVL-MaLR	chr5	150529105	150529107	+	ENSMUST00000201149.1,ENSMUSG00000041147.10	Brca2	ENSMUSG00000041147.10	ENSMUST00000201149.1	protein_coding	chr5:150529106-150532402
chr5	150547309	150547453	-	U4	snRNA	snRNA	chr5	150547452	150547454	-	ENSMUST00000180345.1,ENSMUSG00000095531.1	Gm25284	ENSMUSG00000095531.1	ENSMUST00000180345.1	snRNA	chr5:150547313-150547453
chr5	150551712	150551807	-	U6	snRNA	snRNA	chr5	150551806	150551808	-	ENSMUST00000157857.1,ENSMUSG00000088482.1	Gm23641	ENSMUSG00000088482.1	ENSMUST00000157857.1	snRNA	chr5:150551707-150551807
chr5	150553761	150554030	-	B4A	SINE	B4	chr5	150553875	150553877	+	ENSMUST00000202837.1,ENSMUSG00000041147.10	Brca2	ENSMUSG00000041147.10	ENSMUST00000202837.1	protein_coding	chr5:150553876-150556895
chr5	150556424	150556836	-	L1Md_F2	LINE	L1	chr5	150556478	150556480	+	ENSMUST00000202693.1,ENSMUSG00000041147.10	Brca2	ENSMUSG00000041147.10	ENSMUST00000202693.1	protein_coding	chr5:150556479-150557250
chr5	150561897	150562633	-	RMER6A	LTR	ERVK	chr5	150562310	150562312	+	ENSMUST00000201648.1,ENSMUSG00000107178.1	Gm42531	ENSMUSG00000107178.1	ENSMUST00000201648.1	sense_intronic	chr5:150562311-150566358
chr5	150566416	150566526	-	L1MC5a	LINE	L1	chr5	150566425	150566427	-	ENSMUST00000201843.1,ENSMUSG00000106764.1	Gm42529	ENSMUSG00000106764.1	ENSMUST00000201843.1	antisense	chr5:150560209-150566426
chr5	150568583	150568721	-	B1_Mm	SINE	Alu	chr5	150568587	150568589	+	ENSMUST00000201165.1,ENSMUSG00000041147.10	Brca2	ENSMUSG00000041147.10	ENSMUST00000201165.1	protein_coding	chr5:150568588-150570329
chr5	150597051	150597202	+	B1_Mur3	SINE	Alu	chr5	150597187	150597189	-	ENSMUST00000202291.2,ENSMUSG00000041132.11	N4bp2l1	ENSMUSG00000041132.11	ENSMUST00000202291.2	protein_coding	chr5:150574000-150597188
chr5	150648204	150648357	-	B1_Mus2	SINE	Alu	chr5	150648260	150648262	-	ENSMUST00000201384.1,ENSMUSG00000029655.17	N4bp2l2	ENSMUSG00000029655.17	ENSMUST00000201384.1	protein_coding	chr5:150640736-150648261
chr5	150710917	150711061	-	B4A	SINE	B4	chr5	150710963	150710965	-	ENSMUST00000104404.1,ENSMUSG00000077592.1	Gm26013	ENSMUSG00000077592.1	ENSMUST00000104404.1	snoRNA	chr5:150710846-150710964
chr5	150747671	150747861	-	MTEb	LTR	ERVL-MaLR	chr5	150747821	150747823	+	ENSMUST00000133738.1,ENSMUSG00000034021.15	Pds5b	ENSMUSG00000034021.15	ENSMUST00000133738.1	protein_coding	chr5:150747822-150748613
chr5	150751984	150752112	+	B1_Mus1	SINE	Alu	chr5	150752092	150752094	+	ENSMUST00000200678.1,ENSMUSG00000107048.1	Gm43807	ENSMUSG00000107048.1	ENSMUST00000200678.1	sense_intronic	chr5:150752093-150753873
chr5	150759269	150759481	+	(CTCTG)n	Simple_repeat	Simple_repeat	chr5	150759363	150759365	+	ENSMUST00000154083.1,ENSMUSG00000034021.15	Pds5b	ENSMUSG00000034021.15	ENSMUST00000154083.1	protein_coding	chr5:150759364-150769865
chr5	150882345	150882849	-	RLTR11A2	LTR	ERVK	chr5	150882641	150882643	-	ENSMUST00000200887.1,ENSMUSG00000107047.1	Gm43298	ENSMUSG00000107047.1	ENSMUST00000200887.1	lincRNA	chr5:150863963-150882642
chr5	151400043	151400355	+	RLTR51B_Mm	LTR	ERVK?	chr5	151400143	151400145	+	ENSMUST00000202216.1,ENSMUSG00000097321.5	1700028E10Rik	ENSMUSG00000097321.5	ENSMUST00000202216.1	processed_transcript	chr5:151400144-151413876
chr5	151685494	151685986	+	MT2_Mm	LTR	ERVL	chr5	151685810	151685812	+	ENSMUST00000201237.1,ENSMUSG00000107241.1	Gm43129	ENSMUSG00000107241.1	ENSMUST00000201237.1	lincRNA	chr5:151685811-151693926
chr5	151700201	151700308	-	U6	snRNA	snRNA	chr5	151700307	151700309	-	ENSMUST00000179440.1,ENSMUSG00000095272.1	Gm24242	ENSMUSG00000095272.1	ENSMUST00000179440.1	snRNA	chr5:151700202-151700308
chr5	151700308	151700319	-	L1_Mm	LINE	L1	chr5	151700307	151700309	-	ENSMUST00000179440.1,ENSMUSG00000095272.1	Gm24242	ENSMUSG00000095272.1	ENSMUST00000179440.1	snRNA	chr5:151700202-151700308
chr5	151702142	151702536	-	MTA_Mm	LTR	ERVL-MaLR	chr5	151702467	151702469	-	ENSMUST00000175065.2,ENSMUSG00000092806.2	Gm26463	ENSMUSG00000092806.2	ENSMUST00000175065.2	miRNA	chr5:151702368-151702468
chr6	3051175	3051446	-	MT2_Mm	LTR	ERVL	chr6	3051408	3051410	-	ENSMUST00000116852.2,ENSMUSG00000094571.1	Gm23551	ENSMUSG00000094571.1	ENSMUST00000116852.2	miRNA	chr6:3051289-3051409
chr6	3184985	3191444	-	IAPEz-int	LTR	ERVK	chr6	3190690	3190692	+	ENSMUST00000202184.1,ENSMUSG00000107233.1	Gm42959	ENSMUSG00000107233.1	ENSMUST00000202184.1	TEC	chr6:3190691-3190902
chr6	3327083	3328265	+	L1_Mur3	LINE	L1	chr6	3327854	3327856	-	ENSMUST00000201762.1,ENSMUSG00000107017.1	Gm43196	ENSMUSG00000107017.1	ENSMUST00000201762.1	TEC	chr6:3325742-3327855
chr6	3333740	3337110	-	IAPEY4_I-int	LTR	ERVK	chr6	3334632	3334634	+	ENSMUST00000200927.1,ENSMUSG00000107222.1	Gm43198	ENSMUSG00000107222.1	ENSMUST00000200927.1	TEC	chr6:3334633-3334958
chr6	3337207	3341286	-	IAPEY4_I-int	LTR	ERVK	chr6	3339353	3339355	-	ENSMUST00000201493.1,ENSMUSG00000107215.1	Gm43197	ENSMUSG00000107215.1	ENSMUST00000201493.1	TEC	chr6:3336772-3339354
chr6	3558387	3559360	+	L1_Mus3	LINE	L1	chr6	3558976	3558978	+	ENSMUST00000184461.7,ENSMUSG00000001376.17	Vps50	ENSMUSG00000001376.17	ENSMUST00000184461.7	protein_coding	chr6:3558977-3603315
chr6	3570539	3570799	+	L1_Rod	LINE	L1	chr6	3570693	3570695	+	ENSMUST00000183532.7,ENSMUSG00000001376.17	Vps50	ENSMUSG00000001376.17	ENSMUST00000183532.7	protein_coding	chr6:3570694-3603315
chr6	3579070	3585249	-	L1Md_T	LINE	L1	chr6	3583813	3583815	+	ENSMUST00000202850.1,ENSMUSG00000107094.1	Gm43294	ENSMUSG00000107094.1	ENSMUST00000202850.1	TEC	chr6:3583814-3586303
chr6	3752883	3753142	+	MIR	SINE	MIR	chr6	3752973	3752975	-	ENSMUST00000168592.8,ENSMUSG00000023964.15	Calcr	ENSMUSG00000023964.15	ENSMUST00000168592.8	protein_coding	chr6:3686822-3752974
chr6	3752883	3753142	+	MIR	SINE	MIR	chr6	3752973	3752975	-	ENSMUST00000170266.2,ENSMUSG00000023964.15	Calcr	ENSMUSG00000023964.15	ENSMUST00000170266.2	protein_coding	chr6:3686822-3752974
chr6	3988738	3989075	-	RMER5	LTR	ERV1	chr6	3988857	3988859	-	ENSMUST00000203257.1,ENSMUSG00000029664.10	Tfpi2	ENSMUSG00000029664.10	ENSMUST00000203257.1	protein_coding	chr6:3963385-3988858
chr6	3988738	3989075	-	RMER5	LTR	ERV1	chr6	3988918	3988920	-	ENSMUST00000183682.2,ENSMUSG00000029664.10	Tfpi2	ENSMUSG00000029664.10	ENSMUST00000183682.2	protein_coding	chr6:3965528-3988919
chr6	4003836	4003904	+	(GA)n	Simple_repeat	Simple_repeat	chr6	4003903	4003905	+	ENSMUST00000031670.9,ENSMUSG00000032766.9	Gng11	ENSMUSG00000032766.9	ENSMUST00000031670.9	protein_coding	chr6:4003904-4008445
chr6	4047304	4047645	-	MTE2b	LTR	ERVL-MaLR	chr6	4047584	4047586	-	ENSMUST00000204264.1,ENSMUSG00000107681.1	4930528H21Rik	ENSMUSG00000107681.1	ENSMUST00000204264.1	lincRNA	chr6:4031841-4047585
chr6	4363403	4364661	+	IAPEz-int	LTR	ERVK	chr6	4364394	4364396	-	ENSMUST00000204501.1,ENSMUSG00000107564.1	Gm44379	ENSMUSG00000107564.1	ENSMUST00000204501.1	TEC	chr6:4364232-4364395
chr6	4364659	4367935	+	IAPEz-int	LTR	ERVK	chr6	4367773	4367775	+	ENSMUST00000203125.1,ENSMUSG00000108014.1	Gm44380	ENSMUSG00000108014.1	ENSMUST00000203125.1	TEC	chr6:4367774-4368066
chr6	4382877	4383096	+	7SK	RNA	RNA	chr6	4382877	4382879	+	ENSMUST00000157238.1,ENSMUSG00000087863.1	Gm24442	ENSMUSG00000087863.1	ENSMUST00000157238.1	misc_RNA	chr6:4382878-4383204
chr6	4596532	4596842	-	ORR1E	LTR	ERVL-MaLR	chr6	4596650	4596652	-	ENSMUST00000181941.1,ENSMUSG00000097513.1	Gm26696	ENSMUSG00000097513.1	ENSMUST00000181941.1	TEC	chr6:4593804-4596651
chr6	4770736	4771130	-	MTA_Mm	LTR	ERVL-MaLR	chr6	4770899	4770901	+	ENSMUST00000205169.1,ENSMUSG00000107977.1	Gm44121	ENSMUSG00000107977.1	ENSMUST00000205169.1	TEC	chr6:4770900-4772905
chr6	4903317	4903342	+	GC_rich	Low_complexity	Low_complexity	chr6	4903319	4903321	+	ENSMUST00000035813.8,ENSMUSG00000032827.15	Ppp1r9a	ENSMUSG00000032827.15	ENSMUST00000035813.8	protein_coding	chr6:4903320-5165661
chr6	4946496	4946697	+	(GAAA)n	Simple_repeat	Simple_repeat	chr6	4946567	4946569	+	ENSMUST00000180425.1,ENSMUSG00000097464.1	Gm26736	ENSMUSG00000097464.1	ENSMUST00000180425.1	TEC	chr6:4946568-4947803
chr6	5113331	5113497	+	MIRc	SINE	MIR	chr6	5113458	5113460	+	ENSMUST00000065842.6,ENSMUSG00000032827.15	Ppp1r9a	ENSMUSG00000032827.15	ENSMUST00000065842.6	protein_coding	chr6:5113459-5116508
chr6	5220383	5220501	+	RLTR28	LTR	ERVL	chr6	5220485	5220487	-	ENSMUST00000203092.1,ENSMUSG00000107881.1	Gm44250	ENSMUSG00000107881.1	ENSMUST00000203092.1	TEC	chr6:5216258-5220486
chr6	6856216	6856263	+	G-rich	Low_complexity	Low_complexity	chr6	6856250	6856252	-	ENSMUST00000204703.1,ENSMUSG00000107967.1	Gm44094	ENSMUSG00000107967.1	ENSMUST00000204703.1	TEC	chr6:6854222-6856251
chr6	7765164	7766548	-	L1VL2	LINE	L1	chr6	7766393	7766395	+	ENSMUST00000203458.1,ENSMUSG00000107394.1	1700012J15Rik	ENSMUSG00000107394.1	ENSMUST00000203458.1	lincRNA	chr6:7766394-7777681
chr6	7844809	7844842	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	7844841	7844843	+	ENSMUST00000040159.5,ENSMUSG00000042460.5	C1galt1	ENSMUSG00000042460.5	ENSMUST00000040159.5	protein_coding	chr6:7844842-7875687
chr6	7853299	7854972	-	L1M4c	LINE	L1	chr6	7853870	7853872	+	ENSMUST00000203289.1,ENSMUSG00000107549.1	Gm43961	ENSMUSG00000107549.1	ENSMUST00000203289.1	TEC	chr6:7853871-7855742
chr6	8192570	8192726	-	Lx7	LINE	L1	chr6	8192616	8192618	-	ENSMUST00000115537.1,ENSMUSG00000068794.7	Col28a1	ENSMUSG00000068794.7	ENSMUST00000115537.1	protein_coding	chr6:7997808-8192617
chr6	8209186	8209222	+	GC_rich	Low_complexity	Low_complexity	chr6	8209221	8209223	+	ENSMUST00000040017.7,ENSMUSG00000042447.13	Mios	ENSMUSG00000042447.13	ENSMUST00000040017.7	protein_coding	chr6:8209222-8236274
chr6	8229391	8229619	-	L1MEc	LINE	L1	chr6	8229504	8229506	+	ENSMUST00000161134.1,ENSMUSG00000042447.13	Mios	ENSMUSG00000042447.13	ENSMUST00000161134.1	protein_coding	chr6:8229505-8236268
chr6	8439352	8439590	+	7SK	RNA	RNA	chr6	8439352	8439354	+	ENSMUST00000157493.1,ENSMUSG00000088118.1	Gm24059	ENSMUSG00000088118.1	ENSMUST00000157493.1	misc_RNA	chr6:8439353-8439664
chr6	8511193	8511301	-	L1MD2	LINE	L1	chr6	8511226	8511228	+	ENSMUST00000162383.7,ENSMUSG00000029638.17	Glcci1	ENSMUSG00000029638.17	ENSMUST00000162383.7	protein_coding	chr6:8511227-8579647
chr6	10334295	10334307	+	L1Md_F	LINE	L1	chr6	10334295	10334297	+	ENSMUST00000204122.1,ENSMUSG00000107762.1	Gm18421	ENSMUSG00000107762.1	ENSMUST00000204122.1	processed_pseudogene	chr6:10334296-10334920
chr6	10804543	10809533	+	L1Md_F2	LINE	L1	chr6	10804827	10804829	+	ENSMUST00000204249.1,ENSMUSG00000108249.1	Gm43960	ENSMUSG00000108249.1	ENSMUST00000204249.1	processed_pseudogene	chr6:10804828-10809847
chr6	10840586	10840693	-	U6	snRNA	snRNA	chr6	10840692	10840694	-	ENSMUST00000180294.1,ENSMUSG00000094367.1	Gm26058	ENSMUSG00000094367.1	ENSMUST00000180294.1	snRNA	chr6:10840587-10840693
chr6	10895387	10895627	+	L1M5	LINE	L1	chr6	10895489	10895491	+	ENSMUST00000204954.1,ENSMUSG00000107847.1	Gm35822	ENSMUSG00000107847.1	ENSMUST00000204954.1	lincRNA	chr6:10895490-10970126
chr6	10979329	10979852	-	Lx3_Mus	LINE	L1	chr6	10979637	10979639	-	ENSMUST00000203495.2,ENSMUSG00000107948.2	AA545190	ENSMUSG00000107948.2	ENSMUST00000203495.2	lincRNA	chr6:10971560-10979638
chr6	10979329	10979852	-	Lx3_Mus	LINE	L1	chr6	10979612	10979614	-	ENSMUST00000204434.2,ENSMUSG00000107948.2	AA545190	ENSMUSG00000107948.2	ENSMUST00000204434.2	lincRNA	chr6:10971999-10979613
chr6	12419196	12419549	+	ORR1E	LTR	ERVL-MaLR	chr6	12419360	12419362	-	ENSMUST00000122369.3,ENSMUSG00000032625.14	Thsd7a	ENSMUSG00000032625.14	ENSMUST00000122369.3	protein_coding	chr6:12317349-12419361
chr6	12608842	12609197	+	ORR1B2	LTR	ERVL-MaLR	chr6	12608995	12608997	+	ENSMUST00000203511.1,ENSMUSG00000107422.1	Gm44129	ENSMUSG00000107422.1	ENSMUST00000203511.1	lincRNA	chr6:12608996-12658956
chr6	12742898	12743019	+	5S	rRNA	rRNA	chr6	12742898	12742900	+	ENSMUST00000083096.1,ENSMUSG00000065030.1	n-R5s160	ENSMUSG00000065030.1	ENSMUST00000083096.1	rRNA	chr6:12742899-12743018
chr6	12916767	12917856	-	Lx2B	LINE	L1	chr6	12917524	12917526	+	ENSMUST00000204922.1,ENSMUSG00000108050.1	Gm44472	ENSMUSG00000108050.1	ENSMUST00000204922.1	TEC	chr6:12917525-12918467
chr6	13208537	13208954	+	RLTR10A	LTR	ERVK	chr6	13208542	13208544	-	ENSMUST00000204339.1,ENSMUSG00000079679.3	Vwde	ENSMUSG00000079679.3	ENSMUST00000204339.1	protein_coding	chr6:13196045-13208543
chr6	13549505	13549612	+	U6	snRNA	snRNA	chr6	13549505	13549507	+	ENSMUST00000179274.1,ENSMUSG00000095489.1	Gm25737	ENSMUSG00000095489.1	ENSMUST00000179274.1	snRNA	chr6:13549506-13549612
chr6	13838439	13838466	+	(A)n	Simple_repeat	Simple_repeat	chr6	13838453	13838455	-	ENSMUST00000115492.1,ENSMUSG00000048216.13	Gpr85	ENSMUSG00000048216.13	ENSMUST00000115492.1	protein_coding	chr6:13835068-13838454
chr6	14457044	14457150	-	U6	snRNA	snRNA	chr6	14457149	14457151	-	ENSMUST00000104146.1,ENSMUSG00000077334.1	Gm23013	ENSMUSG00000077334.1	ENSMUST00000104146.1	snRNA	chr6:14457045-14457150
chr6	14901320	14901426	+	(CA)n	Simple_repeat	Simple_repeat	chr6	14901348	14901350	+	ENSMUST00000115477.7,ENSMUSG00000029563.16	Foxp2	ENSMUSG00000029563.16	ENSMUST00000115477.7	protein_coding	chr6:14901349-15441977
chr6	14901320	14901426	+	(CA)n	Simple_repeat	Simple_repeat	chr6	14901387	14901389	+	ENSMUST00000151060.7,ENSMUSG00000029563.16	Foxp2	ENSMUSG00000029563.16	ENSMUST00000151060.7	protein_coding	chr6:14901388-15411938
chr6	16469891	16470168	+	L2	LINE	L2	chr6	16469949	16469951	-	ENSMUST00000203761.2,ENSMUSG00000108295.2	Gm36406	ENSMUSG00000108295.2	ENSMUST00000203761.2	processed_transcript	chr6:16457390-16469950
chr6	16469891	16470168	+	L2	LINE	L2	chr6	16469903	16469905	-	ENSMUST00000203052.1,ENSMUSG00000108295.2	Gm36406	ENSMUSG00000108295.2	ENSMUST00000203052.1	processed_transcript	chr6:16468236-16469904
chr6	17171821	17171871	+	(CA)n	Simple_repeat	Simple_repeat	chr6	17171832	17171834	-	ENSMUST00000139701.1,ENSMUSG00000054556.6	Gm4876	ENSMUSG00000054556.6	ENSMUST00000139701.1	antisense	chr6:17076261-17171833
chr6	17281171	17281314	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	17281184	17281186	+	ENSMUST00000000058.6,ENSMUSG00000000058.6	Cav2	ENSMUSG00000000058.6	ENSMUST00000000058.6	protein_coding	chr6:17281185-17289115
chr6	17385576	17385704	+	MamRep605	LTR?	LTR?	chr6	17385603	17385605	-	ENSMUST00000131334.1,ENSMUSG00000085264.1	Gm15581	ENSMUSG00000085264.1	ENSMUST00000131334.1	antisense	chr6:17206823-17385604
chr6	17436305	17436412	+	U6	snRNA	snRNA	chr6	17436305	17436307	+	ENSMUST00000179184.1,ENSMUSG00000093902.1	Gm25021	ENSMUSG00000093902.1	ENSMUST00000179184.1	snRNA	chr6:17436306-17436412
chr6	17636168	17636320	+	MER53	DNA	hAT	chr6	17636233	17636235	+	ENSMUST00000148694.7,ENSMUSG00000015733.13	Capza2	ENSMUSG00000015733.13	ENSMUST00000148694.7	protein_coding	chr6:17636234-17656447
chr6	17636984	17637048	+	GC_rich	Low_complexity	Low_complexity	chr6	17637034	17637036	+	ENSMUST00000156701.7,ENSMUSG00000015733.13	Capza2	ENSMUSG00000015733.13	ENSMUST00000156701.7	protein_coding	chr6:17637035-17659609
chr6	17636984	17637048	+	GC_rich	Low_complexity	Low_complexity	chr6	17637041	17637043	+	ENSMUST00000136771.5,ENSMUSG00000015733.13	Capza2	ENSMUSG00000015733.13	ENSMUST00000136771.5	protein_coding	chr6:17637042-17656397
chr6	17717536	17717599	+	(GA)n	Simple_repeat	Simple_repeat	chr6	17717577	17717579	+	ENSMUST00000202933.1,ENSMUSG00000106822.1	Gm43533	ENSMUSG00000106822.1	ENSMUST00000202933.1	TEC	chr6:17717578-17720513
chr6	18111931	18112029	-	L1MA4A	LINE	L1	chr6	18111960	18111962	-	ENSMUST00000202462.1,ENSMUSG00000107177.1	Gm43845	ENSMUSG00000107177.1	ENSMUST00000202462.1	TEC	chr6:18110142-18111961
chr6	18288771	18289433	-	Lx3_Mus	LINE	L1	chr6	18289047	18289049	-	ENSMUST00000143135.1,ENSMUSG00000087389.1	Gm15592	ENSMUSG00000087389.1	ENSMUST00000143135.1	antisense	chr6:18270136-18289048
chr6	18428226	18428283	+	(TA)n	Simple_repeat	Simple_repeat	chr6	18428230	18428232	-	ENSMUST00000152499.7,ENSMUSG00000000416.16	Cttnbp2	ENSMUSG00000000416.16	ENSMUST00000152499.7	protein_coding	chr6:18366478-18428231
chr6	18449332	18449779	-	RLTR17B_Mm	LTR	ERVK	chr6	18449339	18449341	-	ENSMUST00000175530.1,ENSMUSG00000093271.1	Gm26233	ENSMUSG00000093271.1	ENSMUST00000175530.1	miRNA	chr6:18449271-18449340
chr6	18727291	18727398	+	U6	snRNA	snRNA	chr6	18727291	18727293	+	ENSMUST00000180301.1,ENSMUSG00000095722.1	Gm23648	ENSMUSG00000095722.1	ENSMUST00000180301.1	snRNA	chr6:18727292-18727398
chr6	18843362	18846295	-	MMVL30-int	LTR	ERV1	chr6	18844219	18844221	+	ENSMUST00000180863.1,ENSMUSG00000097815.1	Gm26809	ENSMUSG00000097815.1	ENSMUST00000180863.1	lincRNA	chr6:18844220-18847360
chr6	18846643	18846795	-	MMVL30-int	LTR	ERV1	chr6	18846762	18846764	-	ENSMUST00000201775.1,ENSMUSG00000106874.1	Gm20186	ENSMUSG00000106874.1	ENSMUST00000201775.1	lincRNA	chr6:18845910-18846763
chr6	18846643	18846795	-	MMVL30-int	LTR	ERV1	chr6	18846763	18846765	-	ENSMUST00000202148.1,ENSMUSG00000106874.1	Gm20186	ENSMUSG00000106874.1	ENSMUST00000202148.1	lincRNA	chr6:18846295-18846764
chr6	18881132	18886233	+	L1Md_A	LINE	L1	chr6	18882710	18882712	+	ENSMUST00000202002.1,ENSMUSG00000106819.1	Gm43498	ENSMUSG00000106819.1	ENSMUST00000202002.1	processed_pseudogene	chr6:18882711-18884196
chr6	19046545	19046848	-	Lx2B2	LINE	L1	chr6	19046836	19046838	+	ENSMUST00000122701.1,ENSMUSG00000084650.1	Gm22718	ENSMUSG00000084650.1	ENSMUST00000122701.1	misc_RNA	chr6:19046837-19047151
chr6	19624609	19624712	+	U6	snRNA	snRNA	chr6	19624608	19624610	+	ENSMUST00000083768.1,ENSMUSG00000065702.1	Gm22828	ENSMUSG00000065702.1	ENSMUST00000083768.1	snRNA	chr6:19624609-19624715
chr6	19777544	19777765	+	L1_Mur3	LINE	L1	chr6	19777544	19777546	-	ENSMUST00000202405.1,ENSMUSG00000107100.1	Gm18482	ENSMUSG00000107100.1	ENSMUST00000202405.1	processed_pseudogene	chr6:19773955-19777545
chr6	19785797	19789245	+	RLTR44-int	LTR	ERVK	chr6	19788052	19788054	+	ENSMUST00000201774.1,ENSMUSG00000107067.1	Gm42581	ENSMUSG00000107067.1	ENSMUST00000201774.1	processed_pseudogene	chr6:19788053-19789018
chr6	21128007	21128164	-	L1_Mus1	LINE	L1	chr6	21128155	21128157	+	ENSMUST00000157833.1,ENSMUSG00000088458.1	Gm26373	ENSMUSG00000088458.1	ENSMUST00000157833.1	snRNA	chr6:21128156-21128258
chr6	21681171	21681378	+	L1_Mus1	LINE	L1	chr6	21681300	21681302	+	ENSMUST00000201318.1,ENSMUSG00000106855.1	5330437M03Rik	ENSMUSG00000106855.1	ENSMUST00000201318.1	TEC	chr6:21681301-21685383
chr6	22758558	22759403	-	Lx3C	LINE	L1	chr6	22759398	22759400	+	ENSMUST00000202509.1,ENSMUSG00000107303.1	Gm18861	ENSMUSG00000107303.1	ENSMUST00000202509.1	processed_pseudogene	chr6:22759399-22760584
chr6	22768157	22768217	-	RLTR20C2_MM	LTR	ERVK	chr6	22768201	22768203	-	ENSMUST00000104685.1,ENSMUSG00000096079.1	Gm23961	ENSMUSG00000096079.1	ENSMUST00000104685.1	miRNA	chr6:22768106-22768202
chr6	22789615	22790132	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	22789817	22789819	+	ENSMUST00000180080.1,ENSMUSG00000096721.1	Gm25942	ENSMUSG00000096721.1	ENSMUST00000180080.1	miRNA	chr6:22789818-22789927
chr6	23251111	23251159	+	(T)n	Simple_repeat	Simple_repeat	chr6	23251132	23251134	+	ENSMUST00000202489.1,ENSMUSG00000106775.1	C130093G08Rik	ENSMUSG00000106775.1	ENSMUST00000202489.1	TEC	chr6:23251133-23253358
chr6	23519745	23519795	+	5S	rRNA	rRNA	chr6	23519745	23519747	+	ENSMUST00000185172.1,ENSMUSG00000098877.1	Gm27959	ENSMUSG00000098877.1	ENSMUST00000185172.1	rRNA	chr6:23519746-23519856
chr6	23639873	23639956	-	5S	rRNA	rRNA	chr6	23639955	23639957	-	ENSMUST00000158260.1,ENSMUSG00000088885.1	Gm24217	ENSMUSG00000088885.1	ENSMUST00000158260.1	rRNA	chr6:23639824-23639956
chr6	23639955	23640064	-	MTC	LTR	ERVL-MaLR	chr6	23639955	23639957	-	ENSMUST00000158260.1,ENSMUSG00000088885.1	Gm24217	ENSMUSG00000088885.1	ENSMUST00000158260.1	rRNA	chr6:23639824-23639956
chr6	23839363	23839462	+	GC_rich	Low_complexity	Low_complexity	chr6	23839419	23839421	-	ENSMUST00000115358.8,ENSMUSG00000017978.18	Cadps2	ENSMUSG00000017978.18	ENSMUST00000115358.8	protein_coding	chr6:23262773-23839420
chr6	23839363	23839462	+	GC_rich	Low_complexity	Low_complexity	chr6	23839420	23839422	-	ENSMUST00000163871.8,ENSMUSG00000017978.18	Cadps2	ENSMUSG00000017978.18	ENSMUST00000163871.8	protein_coding	chr6:23262773-23839421
chr6	24143299	24143693	+	MTA_Mm	LTR	ERVL-MaLR	chr6	24143367	24143369	+	ENSMUST00000178407.1,ENSMUSG00000096522.1	Gm26386	ENSMUSG00000096522.1	ENSMUST00000178407.1	miRNA	chr6:24143368-24143468
chr6	24528091	24528307	-	L4_C_Mam	LINE	RTE-X	chr6	24528143	24528145	+	ENSMUST00000031696.9,ENSMUSG00000029685.15	Asb15	ENSMUSG00000029685.15	ENSMUST00000031696.9	protein_coding	chr6:24528144-24570984
chr6	24660350	24660379	+	(A)n	Simple_repeat	Simple_repeat	chr6	24660368	24660370	-	ENSMUST00000200848.1,ENSMUSG00000106946.1	Gm42856	ENSMUSG00000106946.1	ENSMUST00000200848.1	TEC	chr6:24657518-24660369
chr6	24664928	24664961	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	24664937	24664939	-	ENSMUST00000173399.1,ENSMUSG00000029684.14	Wasl	ENSMUSG00000029684.14	ENSMUST00000173399.1	protein_coding	chr6:24637855-24664938
chr6	24791193	24791535	-	MER34-int	LTR	ERV1	chr6	24791200	24791202	+	ENSMUST00000202331.3,ENSMUSG00000029682.5	Spam1	ENSMUSG00000029682.5	ENSMUST00000202331.3	protein_coding	chr6:24791201-24801048
chr6	24791193	24791535	-	MER34-int	LTR	ERV1	chr6	24791214	24791216	+	ENSMUST00000202786.1,ENSMUSG00000029682.5	Spam1	ENSMUSG00000029682.5	ENSMUST00000202786.1	protein_coding	chr6:24791215-24797050
chr6	24857779	24858180	-	MER34-int	LTR	ERV1	chr6	24857996	24857998	+	ENSMUST00000200968.3,ENSMUSG00000029678.8	Hyal5	ENSMUSG00000029678.8	ENSMUST00000200968.3	protein_coding	chr6:24857997-24891958
chr6	24894779	24895915	-	MERVL_2A-int	LTR	ERVL	chr6	24894799	24894801	-	ENSMUST00000104008.1,ENSMUSG00000077196.1	Gm22267	ENSMUSG00000077196.1	ENSMUST00000104008.1	snoRNA	chr6:24894670-24894800
chr6	25746047	25746259	+	B3	SINE	B2	chr6	25746195	25746197	-	ENSMUST00000134339.1,ENSMUSG00000029676.15	Pot1a	ENSMUSG00000029676.15	ENSMUST00000134339.1	protein_coding	chr6:25744501-25746196
chr6	25801167	25801573	-	RLTR9E	LTR	ERVK	chr6	25801397	25801399	-	ENSMUST00000147970.1,ENSMUSG00000029676.15	Pot1a	ENSMUSG00000029676.15	ENSMUST00000147970.1	protein_coding	chr6:25800326-25801398
chr6	25931139	25931543	+	RLTR44B	LTR	ERVK	chr6	25931425	25931427	+	ENSMUST00000201324.1,ENSMUSG00000106799.1	Gm20756	ENSMUSG00000106799.1	ENSMUST00000201324.1	lincRNA	chr6:25931426-25977227
chr6	25953950	25955329	-	Lx7	LINE	L1	chr6	25954484	25954486	+	ENSMUST00000201080.1,ENSMUSG00000106799.1	Gm20756	ENSMUSG00000106799.1	ENSMUST00000201080.1	lincRNA	chr6:25954485-25958159
chr6	26460289	26460430	-	U1	snRNA	snRNA	chr6	26460429	26460431	-	ENSMUST00000157762.1,ENSMUSG00000088387.1	Gm24691	ENSMUSG00000088387.1	ENSMUST00000157762.1	snRNA	chr6:26460291-26460430
chr6	26460430	26460996	-	Lx7	LINE	L1	chr6	26460429	26460431	-	ENSMUST00000157762.1,ENSMUSG00000088387.1	Gm24691	ENSMUSG00000088387.1	ENSMUST00000157762.1	snRNA	chr6:26460291-26460430
chr6	28214500	28214815	-	LTR16B	LTR	ERVL	chr6	28214804	28214806	-	ENSMUST00000201159.1,ENSMUSG00000106990.1	Gm42547	ENSMUSG00000106990.1	ENSMUST00000201159.1	TEC	chr6:28211008-28214805
chr6	28226071	28226227	-	B4A	SINE	B4	chr6	28226169	28226171	-	ENSMUST00000202392.1,ENSMUSG00000107320.1	Gm42549	ENSMUSG00000107320.1	ENSMUST00000202392.1	TEC	chr6:28219167-28226170
chr6	28423561	28423591	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	28423589	28423591	+	ENSMUST00000169841.1,ENSMUSG00000020440.13	Arf5	ENSMUSG00000020440.13	ENSMUST00000169841.1	protein_coding	chr6:28423590-28426346
chr6	29113442	29113606	-	U1	snRNA	snRNA	chr6	29113605	29113607	-	ENSMUST00000082502.1,ENSMUSG00000064436.1	Gm25589	ENSMUSG00000064436.1	ENSMUST00000082502.1	snRNA	chr6:29113441-29113606
chr6	29150550	29150698	+	B1_Mus1	SINE	Alu	chr6	29150678	29150680	-	ENSMUST00000178237.1,ENSMUSG00000095596.1	Gm24303	ENSMUSG00000095596.1	ENSMUST00000178237.1	miRNA	chr6:29150554-29150679
chr6	29155068	29155118	+	(CAT)n	Simple_repeat	Simple_repeat	chr6	29155090	29155092	-	ENSMUST00000169214.7,ENSMUSG00000029701.15	Rbm28	ENSMUSG00000029701.15	ENSMUST00000169214.7	protein_coding	chr6:29125142-29155091
chr6	29212208	29212254	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	29212248	29212250	-	ENSMUST00000160878.7,ENSMUSG00000003500.13	Impdh1	ENSMUSG00000003500.13	ENSMUST00000160878.7	protein_coding	chr6:29200437-29212249
chr6	29212284	29212334	+	GC_rich	Low_complexity	Low_complexity	chr6	29212296	29212298	-	ENSMUST00000078155.11,ENSMUSG00000003500.13	Impdh1	ENSMUSG00000003500.13	ENSMUST00000078155.11	protein_coding	chr6:29200437-29212297
chr6	29279482	29279742	+	B4	SINE	B4	chr6	29279592	29279594	+	ENSMUST00000167131.7,ENSMUSG00000079652.8	Fam71f2	ENSMUSG00000079652.8	ENSMUST00000167131.7	protein_coding	chr6:29279593-29287780
chr6	29396656	29396721	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	29396684	29396686	+	ENSMUST00000096084.11,ENSMUSG00000029769.16	Ccdc136	ENSMUSG00000029769.16	ENSMUST00000096084.11	protein_coding	chr6:29396685-29426994
chr6	29526571	29526702	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	29526624	29526626	+	ENSMUST00000004392.11,ENSMUSG00000029771.12	Irf5	ENSMUSG00000029771.12	ENSMUST00000004392.11	protein_coding	chr6:29526625-29537319
chr6	29768367	29768535	+	G-rich	Low_complexity	Low_complexity	chr6	29768442	29768444	+	ENSMUST00000143707.1,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000143707.1	protein_coding	chr6:29768443-29867419
chr6	29768367	29768535	+	G-rich	Low_complexity	Low_complexity	chr6	29768479	29768481	+	ENSMUST00000102995.8,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000102995.8	protein_coding	chr6:29768480-29912304
chr6	29768367	29768535	+	G-rich	Low_complexity	Low_complexity	chr6	29768491	29768493	+	ENSMUST00000115242.8,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000115242.8	protein_coding	chr6:29768492-29912310
chr6	29768367	29768535	+	G-rich	Low_complexity	Low_complexity	chr6	29768497	29768499	+	ENSMUST00000201282.1,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000201282.1	protein_coding	chr6:29768498-29770643
chr6	29768367	29768535	+	G-rich	Low_complexity	Low_complexity	chr6	29768527	29768529	+	ENSMUST00000150365.7,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000150365.7	protein_coding	chr6:29768528-29870613
chr6	29799202	29799632	+	MLT1G3-int	LTR	ERVL-MaLR	chr6	29799550	29799552	+	ENSMUST00000143091.7,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000143091.7	protein_coding	chr6:29799551-29883672
chr6	29876677	29876706	+	(T)n	Simple_repeat	Simple_repeat	chr6	29876678	29876680	+	ENSMUST00000202115.1,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000202115.1	protein_coding	chr6:29876679-29879068
chr6	29893642	29893757	+	PB1D7	SINE	Alu	chr6	29893751	29893753	+	ENSMUST00000201020.1,ENSMUSG00000029772.17	Ahcyl2	ENSMUSG00000029772.17	ENSMUST00000201020.1	protein_coding	chr6:29893752-29896157
chr6	29915474	29915641	+	MTD	LTR	ERVL-MaLR	chr6	29915632	29915634	-	ENSMUST00000201689.1,ENSMUSG00000107012.1	4930528J11Rik	ENSMUSG00000107012.1	ENSMUST00000201689.1	TEC	chr6:29912023-29915633
chr6	29963497	29963555	+	PB1D11	SINE	Alu	chr6	29963554	29963556	+	ENSMUST00000083144.1,ENSMUSG00000065078.1	Gm24536	ENSMUSG00000065078.1	ENSMUST00000083144.1	snRNA	chr6:29963555-29963661
chr6	29963555	29963661	+	U6	snRNA	snRNA	chr6	29963554	29963556	+	ENSMUST00000083144.1,ENSMUSG00000065078.1	Gm24536	ENSMUSG00000065078.1	ENSMUST00000083144.1	snRNA	chr6:29963555-29963661
chr6	29963555	29963661	+	U6	snRNA	snRNA	chr6	29963643	29963645	+	ENSMUST00000122139.1,ENSMUSG00000083961.1	Gm13725	ENSMUSG00000083961.1	ENSMUST00000122139.1	processed_pseudogene	chr6:29963644-29963850
chr6	29988320	29988716	+	MTA_Mm	LTR	ERVL-MaLR	chr6	29988387	29988389	+	ENSMUST00000178068.1,ENSMUSG00000095989.1	Gm23049	ENSMUSG00000095989.1	ENSMUST00000178068.1	miRNA	chr6:29988388-29988489
chr6	30047989	30048021	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	30047990	30047992	+	ENSMUST00000123194.7,ENSMUSG00000058440.14	Nrf1	ENSMUSG00000058440.14	ENSMUST00000123194.7	protein_coding	chr6:30047991-30098575
chr6	30047989	30048021	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	30048001	30048003	+	ENSMUST00000115211.7,ENSMUSG00000058440.14	Nrf1	ENSMUSG00000058440.14	ENSMUST00000115211.7	protein_coding	chr6:30048002-30153180
chr6	30076123	30076466	+	MTC	LTR	ERVL-MaLR	chr6	30076320	30076322	+	ENSMUST00000115199.7,ENSMUSG00000058440.14	Nrf1	ENSMUSG00000058440.14	ENSMUST00000115199.7	protein_coding	chr6:30076321-30129760
chr6	30097718	30097789	-	MTD	LTR	ERVL-MaLR	chr6	30097782	30097784	+	ENSMUST00000133837.1,ENSMUSG00000058440.14	Nrf1	ENSMUSG00000058440.14	ENSMUST00000133837.1	protein_coding	chr6:30097783-30116126
chr6	30143886	30144127	-	7SK	RNA	RNA	chr6	30144126	30144128	-	ENSMUST00000083409.1,ENSMUSG00000065343.1	Gm25580	ENSMUSG00000065343.1	ENSMUST00000083409.1	misc_RNA	chr6:30143801-30144127
chr6	30379101	30379216	+	5S	rRNA	rRNA	chr6	30379100	30379102	+	ENSMUST00000083728.1,ENSMUSG00000065662.1	n-R5s161	ENSMUSG00000065662.1	ENSMUST00000083728.1	rRNA	chr6:30379101-30379214
chr6	30443758	30443963	-	B3	SINE	B2	chr6	30443769	30443771	+	ENSMUST00000150854.1,ENSMUSG00000029775.14	Klhdc10	ENSMUSG00000029775.14	ENSMUST00000150854.1	protein_coding	chr6:30443770-30450841
chr6	30576008	30576045	+	T-rich	Low_complexity	Low_complexity	chr6	30576034	30576036	-	ENSMUST00000124153.1,ENSMUSG00000086854.1	Gm13781	ENSMUSG00000086854.1	ENSMUST00000124153.1	antisense	chr6:30573153-30576035
chr6	30611006	30611075	+	CT-rich	Low_complexity	Low_complexity	chr6	30611009	30611011	+	ENSMUST00000062758.10,ENSMUSG00000029788.13	Cpa5	ENSMUSG00000029788.13	ENSMUST00000062758.10	protein_coding	chr6:30611010-30631745
chr6	30611006	30611075	+	CT-rich	Low_complexity	Low_complexity	chr6	30611050	30611052	+	ENSMUST00000115138.7,ENSMUSG00000029788.13	Cpa5	ENSMUSG00000029788.13	ENSMUST00000115138.7	protein_coding	chr6:30611051-30631520
chr6	30731616	30732031	-	L2c	LINE	L2	chr6	30731967	30731969	+	ENSMUST00000151777.7,ENSMUSG00000051855.15	Mest	ENSMUSG00000051855.15	ENSMUST00000151777.7	protein_coding	chr6:30731968-30742578
chr6	30734364	30734597	-	L3	LINE	CR1	chr6	30734417	30734419	+	ENSMUST00000183949.1,ENSMUSG00000098260.1	Gm27522	ENSMUSG00000098260.1	ENSMUST00000183949.1	misc_RNA	chr6:30734418-30734647
chr6	30896436	30896483	+	GC_rich	Low_complexity	Low_complexity	chr6	30896436	30896438	-	ENSMUST00000151973.1,ENSMUSG00000025607.15	Copg2	ENSMUSG00000025607.15	ENSMUST00000151973.1	protein_coding	chr6:30894897-30896437
chr6	30900368	30900651	-	B4A	SINE	B4	chr6	30900491	30900493	-	ENSMUST00000201230.1,ENSMUSG00000039032.2	Tsga13	ENSMUSG00000039032.2	ENSMUST00000201230.1	protein_coding	chr6:30897215-30900492
chr6	30903402	30903477	+	(TTTC)n	Simple_repeat	Simple_repeat	chr6	30903458	30903460	-	ENSMUST00000202703.1,ENSMUSG00000039032.2	Tsga13	ENSMUSG00000039032.2	ENSMUST00000202703.1	protein_coding	chr6:30896981-30903459
chr6	31147408	31147447	+	(TG)n	Simple_repeat	Simple_repeat	chr6	31147418	31147420	-	ENSMUST00000195025.1,ENSMUSG00000103220.1	Gm37728	ENSMUSG00000103220.1	ENSMUST00000195025.1	TEC	chr6:31145128-31147419
chr6	31292503	31293037	-	Tigger7	DNA	TcMar-Tigger	chr6	31292533	31292535	+	ENSMUST00000201375.1,ENSMUSG00000087380.7	2210408F21Rik	ENSMUSG00000087380.7	ENSMUST00000201375.1	processed_transcript	chr6:31292534-31293666
chr6	31372588	31373023	-	MLT1C	LTR	ERVL-MaLR	chr6	31372894	31372896	+	ENSMUST00000134541.1,ENSMUSG00000086855.1	Gm13844	ENSMUSG00000086855.1	ENSMUST00000134541.1	lincRNA	chr6:31372895-31383877
chr6	31430480	31430874	+	MTB	LTR	ERVL-MaLR	chr6	31430681	31430683	+	ENSMUST00000150949.7,ENSMUSG00000025609.15	Mkln1	ENSMUSG00000025609.15	ENSMUST00000150949.7	protein_coding	chr6:31430682-31489411
chr6	31430480	31430874	+	MTB	LTR	ERVL-MaLR	chr6	31430715	31430717	+	ENSMUST00000147614.1,ENSMUSG00000025609.15	Mkln1	ENSMUSG00000025609.15	ENSMUST00000147614.1	protein_coding	chr6:31430716-31474376
chr6	31476784	31476914	+	B1_Mur1	SINE	Alu	chr6	31476862	31476864	+	ENSMUST00000200915.1,ENSMUSG00000025609.15	Mkln1	ENSMUSG00000025609.15	ENSMUST00000200915.1	protein_coding	chr6:31476863-31480474
chr6	31492608	31492638	+	(TTTTTG)n	Simple_repeat	Simple_repeat	chr6	31492620	31492622	+	ENSMUST00000149859.4,ENSMUSG00000025609.15	Mkln1	ENSMUSG00000025609.15	ENSMUST00000149859.4	protein_coding	chr6:31492621-31507847
chr6	31563958	31563998	+	GC_rich	Low_complexity	Low_complexity	chr6	31563980	31563982	-	ENSMUST00000026698.7,ENSMUSG00000025608.9	Podxl	ENSMUSG00000025608.9	ENSMUST00000026698.7	protein_coding	chr6:31519488-31563981
chr6	31574936	31575016	-	ID4_	SINE	ID	chr6	31574966	31574968	+	ENSMUST00000150540.1,ENSMUSG00000086732.1	Gm6117	ENSMUSG00000086732.1	ENSMUST00000150540.1	lincRNA	chr6:31574967-31576723
chr6	32751962	32752300	+	ORR1E	LTR	ERVL-MaLR	chr6	32752287	32752289	-	ENSMUST00000202626.1,ENSMUSG00000106873.1	BC049739	ENSMUSG00000106873.1	ENSMUST00000202626.1	lincRNA	chr6:32751629-32752288
chr6	32819677	32819850	+	MER3	DNA	hAT-Charlie	chr6	32819691	32819693	-	ENSMUST00000140446.1,ENSMUSG00000053768.13	Chchd3	ENSMUSG00000053768.13	ENSMUST00000140446.1	protein_coding	chr6:32792694-32819692
chr6	33333345	33333455	+	PB1D10	SINE	Alu	chr6	33333416	33333418	+	ENSMUST00000156207.1,ENSMUSG00000029763.17	Exoc4	ENSMUSG00000029763.17	ENSMUST00000156207.1	protein_coding	chr6:33333417-33348134
chr6	33701246	33701649	+	MTB_Mm	LTR	ERVL-MaLR	chr6	33701433	33701435	+	ENSMUST00000143190.1,ENSMUSG00000029763.17	Exoc4	ENSMUSG00000029763.17	ENSMUST00000143190.1	protein_coding	chr6:33701434-33862160
chr6	34151199	34151931	-	RLTR33	LTR	ERVK	chr6	34151928	34151930	+	ENSMUST00000126498.1,ENSMUSG00000087356.1	Gm13856	ENSMUSG00000087356.1	ENSMUST00000126498.1	antisense	chr6:34151929-34174235
chr6	34307258	34307607	+	RMER10A	LTR	ERVL	chr6	34307456	34307458	-	ENSMUST00000201392.1,ENSMUSG00000001642.18	Akr1b3	ENSMUSG00000001642.18	ENSMUST00000201392.1	protein_coding	chr6:34302434-34307457
chr6	34380441	34380651	-	RLTR17	LTR	ERVK	chr6	34380444	34380446	-	ENSMUST00000118862.1,ENSMUSG00000081196.1	Gm13858	ENSMUSG00000081196.1	ENSMUST00000118862.1	unprocessed_pseudogene	chr6:34379467-34380445
chr6	34445356	34445715	-	ORR1B2	LTR	ERVL-MaLR	chr6	34445434	34445436	-	ENSMUST00000150561.1,ENSMUSG00000084965.1	Gm13857	ENSMUSG00000084965.1	ENSMUST00000150561.1	transcribed_processed_pseudogene	chr6:34419396-34445435
chr6	34445356	34445715	-	ORR1B2	LTR	ERVL-MaLR	chr6	34445435	34445437	-	ENSMUST00000141091.1,ENSMUSG00000084965.1	Gm13857	ENSMUSG00000084965.1	ENSMUST00000141091.1	transcribed_processed_pseudogene	chr6:34443523-34445436
chr6	34598556	34598584	+	(CCTG)n	Simple_repeat	Simple_repeat	chr6	34598563	34598565	+	ENSMUST00000115027.7,ENSMUSG00000029761.16	Cald1	ENSMUSG00000029761.16	ENSMUST00000115027.7	protein_coding	chr6:34598564-34775466
chr6	34598556	34598584	+	(CCTG)n	Simple_repeat	Simple_repeat	chr6	34598564	34598566	+	ENSMUST00000115026.7,ENSMUSG00000029761.16	Cald1	ENSMUSG00000029761.16	ENSMUST00000115026.7	protein_coding	chr6:34598565-34775466
chr6	34746309	34746472	+	GA-rich	Low_complexity	Low_complexity	chr6	34746385	34746387	+	ENSMUST00000142716.2,ENSMUSG00000029761.16	Cald1	ENSMUSG00000029761.16	ENSMUST00000142716.2	protein_coding	chr6:34746386-34762124
chr6	34810822	34811105	-	ORR1B2	LTR	ERVL-MaLR	chr6	34810826	34810828	-	ENSMUST00000121220.1,ENSMUSG00000082118.1	Gm13862	ENSMUSG00000082118.1	ENSMUST00000121220.1	processed_pseudogene	chr6:34810631-34810827
chr6	34859343	34860056	-	RMER1C	Other	Other	chr6	34859704	34859706	+	ENSMUST00000202329.1,ENSMUSG00000106707.1	Gm43748	ENSMUSG00000106707.1	ENSMUST00000202329.1	TEC	chr6:34859705-34860937
chr6	34877096	34877503	+	RMER17C2	LTR	ERVK	chr6	34877128	34877130	-	ENSMUST00000118559.1,ENSMUSG00000046806.13	Cyren	ENSMUSG00000046806.13	ENSMUST00000118559.1	protein_coding	chr6:34874646-34877129
chr6	34910433	34910613	+	MIR3	SINE	MIR	chr6	34910594	34910596	-	ENSMUST00000149448.7,ENSMUSG00000058486.11	Wdr91	ENSMUSG00000058486.11	ENSMUST00000149448.7	protein_coding	chr6:34904667-34910595
chr6	34910433	34910613	+	MIR3	SINE	MIR	chr6	34910562	34910564	-	ENSMUST00000152488.7,ENSMUSG00000058486.11	Wdr91	ENSMUSG00000058486.11	ENSMUST00000152488.7	protein_coding	chr6:34908295-34910563
chr6	35204857	35205062	-	Lx9	LINE	L1	chr6	35205046	35205048	+	ENSMUST00000201609.3,ENSMUSG00000038759.15	Nup205	ENSMUSG00000038759.15	ENSMUST00000201609.3	protein_coding	chr6:35205047-35247596
chr6	35252634	35252659	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	35252653	35252655	+	ENSMUST00000152147.7,ENSMUSG00000073155.12	1810058I24Rik	ENSMUSG00000073155.12	ENSMUST00000152147.7	lincRNA	chr6:35252654-35263496
chr6	35613387	35616450	+	L1VL4	LINE	L1	chr6	35615668	35615670	-	ENSMUST00000201009.1,ENSMUSG00000107110.1	Gm42931	ENSMUSG00000107110.1	ENSMUST00000201009.1	lincRNA	chr6:35611089-35615669
chr6	36274269	36274763	-	Lx9	LINE	L1	chr6	36274355	36274357	-	ENSMUST00000163834.2,ENSMUSG00000073154.10	9330158H04Rik	ENSMUSG00000073154.10	ENSMUST00000163834.2	lincRNA	chr6:36211987-36274356
chr6	36699389	36699560	-	MER53	DNA	hAT	chr6	36699396	36699398	+	ENSMUST00000116686.1,ENSMUSG00000080336.1	Gm25111	ENSMUSG00000080336.1	ENSMUST00000116686.1	miRNA	chr6:36699397-36699543
chr6	36956803	36956915	+	MurSatRep1	Unknown	Unknown	chr6	36956849	36956851	+	ENSMUST00000202891.1,ENSMUSG00000107310.1	Gm7452	ENSMUSG00000107310.1	ENSMUST00000202891.1	transcribed_processed_pseudogene	chr6:36956850-36959888
chr6	37299658	37299782	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	37299743	37299745	-	ENSMUST00000136457.1,ENSMUSG00000038665.15	Dgki	ENSMUSG00000038665.15	ENSMUST00000136457.1	protein_coding	chr6:37231044-37299744
chr6	37539136	37539827	+	MLTR18C_MM	LTR	ERVK	chr6	37539680	37539682	+	ENSMUST00000123648.1,ENSMUSG00000038641.12	Akr1d1	ENSMUSG00000038641.12	ENSMUST00000123648.1	protein_coding	chr6:37539681-37557508
chr6	37866556	37866731	+	RLTR19	LTR	ERVK	chr6	37866563	37866565	-	ENSMUST00000201745.1,ENSMUSG00000106853.1	Gm7492	ENSMUSG00000106853.1	ENSMUST00000201745.1	processed_pseudogene	chr6:37865840-37866564
chr6	37876133	37876360	-	RMER6C	LTR	ERVK	chr6	37876329	37876331	+	ENSMUST00000149561.7,ENSMUSG00000029833.17	Trim24	ENSMUSG00000029833.17	ENSMUST00000149561.7	protein_coding	chr6:37876330-37931484
chr6	38118382	38118486	+	U6	snRNA	snRNA	chr6	38118382	38118384	+	ENSMUST00000157299.1,ENSMUSG00000087924.1	Gm23231	ENSMUSG00000087924.1	ENSMUST00000157299.1	snRNA	chr6:38118383-38118486
chr6	38551802	38551835	+	(CCCG)n	Simple_repeat	Simple_repeat	chr6	38551802	38551804	+	ENSMUST00000161227.7,ENSMUSG00000029823.16	Luc7l2	ENSMUSG00000029823.16	ENSMUST00000161227.7	protein_coding	chr6:38551803-38609427
chr6	38553912	38554014	+	B1F	SINE	Alu	chr6	38554006	38554008	-	ENSMUST00000180825.1,ENSMUSG00000097206.1	Gm26699	ENSMUSG00000097206.1	ENSMUST00000180825.1	lincRNA	chr6:38551531-38554007
chr6	38559054	38559476	-	Tigger10	DNA	TcMar-Tigger	chr6	38559214	38559216	+	ENSMUST00000162530.1,ENSMUSG00000029823.16	Luc7l2	ENSMUSG00000029823.16	ENSMUST00000162530.1	protein_coding	chr6:38559215-38569565
chr6	38875971	38876003	+	G-rich	Low_complexity	Low_complexity	chr6	38875970	38875972	-	ENSMUST00000160360.1,ENSMUSG00000061436.15	Hipk2	ENSMUSG00000061436.15	ENSMUST00000160360.1	protein_coding	chr6:38697889-38875971
chr6	38876040	38876292	+	G-rich	Low_complexity	Low_complexity	chr6	38876164	38876166	-	ENSMUST00000161779.7,ENSMUSG00000061436.15	Hipk2	ENSMUSG00000061436.15	ENSMUST00000161779.7	protein_coding	chr6:38694390-38876165
chr6	38971705	38972073	+	ORR1B1	LTR	ERVL-MaLR	chr6	38971864	38971866	+	ENSMUST00000162656.1,ENSMUSG00000029925.13	Tbxas1	ENSMUSG00000029925.13	ENSMUST00000162656.1	protein_coding	chr6:38971865-38983526
chr6	38983146	38983444	+	L3	LINE	CR1	chr6	38983309	38983311	+	ENSMUST00000161360.1,ENSMUSG00000029925.13	Tbxas1	ENSMUSG00000029925.13	ENSMUST00000161360.1	protein_coding	chr6:38983310-39073206
chr6	39126297	39126406	+	MLT1B	LTR	ERVL-MaLR	chr6	39126380	39126382	-	ENSMUST00000202943.1,ENSMUSG00000106976.1	Gm42963	ENSMUSG00000106976.1	ENSMUST00000202943.1	TEC	chr6:39125165-39126381
chr6	39265849	39265942	-	U6	snRNA	snRNA	chr6	39265941	39265943	-	ENSMUST00000158797.1,ENSMUSG00000089422.1	Gm26008	ENSMUSG00000089422.1	ENSMUST00000158797.1	snRNA	chr6:39265844-39265942
chr6	39372894	39373106	+	L2	LINE	L2	chr6	39372929	39372931	-	ENSMUST00000200961.3,ENSMUSG00000029924.12	Slc37a3	ENSMUSG00000029924.12	ENSMUST00000200961.3	protein_coding	chr6:39335989-39372930
chr6	39405043	39405153	-	PB1D10	SINE	Alu	chr6	39405080	39405082	-	ENSMUST00000122874.1,ENSMUSG00000029922.15	Mkrn1	ENSMUSG00000029922.15	ENSMUST00000122874.1	protein_coding	chr6:39401275-39405081
chr6	39597183	39597334	-	B1_Mus1	SINE	Alu	chr6	39597263	39597265	+	ENSMUST00000128064.1,ENSMUSG00000002416.13	Ndufb2	ENSMUSG00000002416.13	ENSMUST00000128064.1	protein_coding	chr6:39597264-39599292
chr6	39601653	39601848	-	URR1B	DNA	hAT-Charlie	chr6	39601780	39601782	+	ENSMUST00000135239.1,ENSMUSG00000002416.13	Ndufb2	ENSMUSG00000002416.13	ENSMUST00000135239.1	protein_coding	chr6:39601781-39603310
chr6	39644726	39644872	+	B1_Mus2	SINE	Alu	chr6	39644785	39644787	-	ENSMUST00000167073.1,ENSMUSG00000002413.15	Braf	ENSMUSG00000002413.15	ENSMUST00000167073.1	protein_coding	chr6:39639292-39644786
chr6	40026714	40027426	-	RLTR19B	LTR	ERVK	chr6	40026893	40026895	+	ENSMUST00000194958.1,ENSMUSG00000103331.1	Gm37995	ENSMUSG00000103331.1	ENSMUST00000194958.1	TEC	chr6:40026894-40028607
chr6	40109720	40110344	-	L2	LINE	L2	chr6	40110250	40110252	+	ENSMUST00000061740.7,ENSMUSG00000057716.6	Tmem178b	ENSMUSG00000057716.6	ENSMUST00000061740.7	protein_coding	chr6:40110251-40248437
chr6	40349282	40350803	-	ORR1B2-int	LTR	ERVL-MaLR	chr6	40350000	40350002	+	ENSMUST00000202856.1,ENSMUSG00000029916.11	Agk	ENSMUSG00000029916.11	ENSMUST00000202856.1	protein_coding	chr6:40350001-40353002
chr6	40890498	40890972	-	RLTR31C_MM	LTR	ERVK	chr6	40890869	40890871	-	ENSMUST00000192446.1,ENSMUSG00000104084.1	Gm38276	ENSMUSG00000104084.1	ENSMUST00000192446.1	TEC	chr6:40889528-40890870
chr6	41021875	41021919	+	(CAT)n	Simple_repeat	Simple_repeat	chr6	41021883	41021885	-	ENSMUST00000192108.1,ENSMUSG00000104105.1	Gm37878	ENSMUSG00000104105.1	ENSMUST00000192108.1	unprocessed_pseudogene	chr6:41021243-41021884
chr6	41081383	41081779	+	MTA_Mm	LTR	ERVL-MaLR	chr6	41081586	41081588	+	ENSMUST00000191867.1,ENSMUSG00000103833.1	Gm37610	ENSMUSG00000103833.1	ENSMUST00000191867.1	sense_overlapping	chr6:41081587-41091983
chr6	41252340	41253331	+	L1Md_F2	LINE	L1	chr6	41253327	41253329	+	ENSMUST00000191929.1,ENSMUSG00000103042.1	Gm2719	ENSMUSG00000103042.1	ENSMUST00000191929.1	processed_pseudogene	chr6:41253328-41253771
chr6	41316763	41318779	+	L1_Mus1	LINE	L1	chr6	41316840	41316842	-	ENSMUST00000173916.1,ENSMUSG00000036938.17	Try5	ENSMUSG00000036938.17	ENSMUST00000173916.1	protein_coding	chr6:41311288-41316841
chr6	41496596	41496929	-	L1_Mur2	LINE	L1	chr6	41496928	41496930	+	ENSMUST00000195367.1,ENSMUSG00000102616.1	Gm37841	ENSMUSG00000102616.1	ENSMUST00000195367.1	processed_pseudogene	chr6:41496929-41497304
chr6	41696161	41697129	+	L1Md_F2	LINE	L1	chr6	41696185	41696187	-	ENSMUST00000192406.1,ENSMUSG00000103788.1	Gm37527	ENSMUSG00000103788.1	ENSMUST00000192406.1	TEC	chr6:41692640-41696186
chr6	42274753	42276252	-	MTE-int	LTR	ERVL-MaLR	chr6	42275649	42275651	+	ENSMUST00000122473.1,ENSMUSG00000084422.1	Gm25108	ENSMUSG00000084422.1	ENSMUST00000122473.1	snoRNA	chr6:42275650-42275727
chr6	42276302	42276596	-	MTEa	LTR	ERVL-MaLR	chr6	42276486	42276488	+	ENSMUST00000132398.7,ENSMUSG00000029863.13	Casp2	ENSMUSG00000029863.13	ENSMUST00000132398.7	protein_coding	chr6:42276487-42280533
chr6	42279629	42279656	+	AT_rich	Low_complexity	Low_complexity	chr6	42279636	42279638	+	ENSMUST00000152893.1,ENSMUSG00000029863.13	Casp2	ENSMUSG00000029863.13	ENSMUST00000152893.1	protein_coding	chr6:42279637-42280490
chr6	42324625	42324661	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	42324639	42324641	-	ENSMUST00000031891.14,ENSMUSG00000029861.17	Fam131b	ENSMUSG00000029861.17	ENSMUST00000031891.14	protein_coding	chr6:42315312-42324640
chr6	42324625	42324661	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	42324642	42324644	-	ENSMUST00000143278.7,ENSMUSG00000029861.17	Fam131b	ENSMUSG00000029861.17	ENSMUST00000143278.7	protein_coding	chr6:42315312-42324643
chr6	42377889	42378016	+	MLT1A	LTR	ERVL-MaLR	chr6	42377955	42377957	+	ENSMUST00000187172.1,ENSMUSG00000101268.6	2010310C07Rik	ENSMUSG00000101268.6	ENSMUST00000187172.1	antisense	chr6:42377956-42381215
chr6	42734091	42734267	-	RMER12	LTR	ERVK	chr6	42734098	42734100	-	ENSMUST00000204841.1,ENSMUSG00000107650.1	Gm44032	ENSMUSG00000107650.1	ENSMUST00000204841.1	processed_pseudogene	chr6:42733934-42734099
chr6	42739352	42739625	-	Lx8	LINE	L1	chr6	42739370	42739372	+	ENSMUST00000213997.1,ENSMUSG00000095831.2	Olfr453	ENSMUSG00000095831.2	ENSMUST00000213997.1	protein_coding	chr6:42739371-42746963
chr6	42775572	42775680	-	U6	snRNA	snRNA	chr6	42775679	42775681	-	ENSMUST00000083100.1,ENSMUSG00000065034.1	Gm22363	ENSMUSG00000065034.1	ENSMUST00000083100.1	snRNA	chr6:42775573-42775680
chr6	42890722	42891008	-	Lx4A	LINE	L1	chr6	42890727	42890729	+	ENSMUST00000213952.2,ENSMUSG00000043119.5	Olfr448	ENSMUSG00000043119.5	ENSMUST00000213952.2	protein_coding	chr6:42890728-42899085
chr6	43282450	43282903	-	L1_Mus3	LINE	L1	chr6	43282613	43282615	+	ENSMUST00000183313.1,ENSMUSG00000033542.13	Arhgef5	ENSMUSG00000033542.13	ENSMUST00000183313.1	protein_coding	chr6:43282614-43289315
chr6	43282450	43282903	-	L1_Mus3	LINE	L1	chr6	43282881	43282883	+	ENSMUST00000182647.1,ENSMUSG00000033542.13	Arhgef5	ENSMUSG00000033542.13	ENSMUST00000182647.1	protein_coding	chr6:43282882-43284015
chr6	43625720	43631165	+	L1Md_T	LINE	L1	chr6	43625965	43625967	-	ENSMUST00000203649.2,ENSMUSG00000029735.17	Tpk1	ENSMUSG00000029735.17	ENSMUST00000203649.2	protein_coding	chr6:43345073-43625966
chr6	43767304	43767401	+	B1_Mus2	SINE	Alu	chr6	43767309	43767311	-	ENSMUST00000203126.1,ENSMUSG00000107465.1	Gm5990	ENSMUSG00000107465.1	ENSMUST00000203126.1	processed_pseudogene	chr6:43766565-43767310
chr6	45080725	45081060	+	Lx7	LINE	L1	chr6	45080745	45080747	+	ENSMUST00000203811.1,ENSMUSG00000107858.1	Gm43879	ENSMUSG00000107858.1	ENSMUST00000203811.1	TEC	chr6:45080746-45084505
chr6	45203458	45203829	+	Lx2A1	LINE	L1	chr6	45203809	45203811	+	ENSMUST00000203950.1,ENSMUSG00000108146.1	Gm43889	ENSMUSG00000108146.1	ENSMUST00000203950.1	TEC	chr6:45203810-45207490
chr6	45300347	45301121	+	RMER1A	Other	Other	chr6	45301102	45301104	+	ENSMUST00000204742.1,ENSMUSG00000108008.1	Gm43869	ENSMUSG00000108008.1	ENSMUST00000204742.1	TEC	chr6:45301103-45302507
chr6	45329155	45329311	+	Lx	LINE	L1	chr6	45329237	45329239	+	ENSMUST00000204251.1,ENSMUSG00000108123.1	Gm43884	ENSMUSG00000108123.1	ENSMUST00000204251.1	TEC	chr6:45329238-45329796
chr6	45901765	45901980	+	B3	SINE	B2	chr6	45901937	45901939	+	ENSMUST00000205039.1,ENSMUSG00000107515.1	Gm43886	ENSMUSG00000107515.1	ENSMUST00000205039.1	TEC	chr6:45901938-45904323
chr6	46044778	46045192	+	MTD	LTR	ERVL-MaLR	chr6	46045142	46045144	+	ENSMUST00000204505.1,ENSMUSG00000107606.1	Gm43873	ENSMUSG00000107606.1	ENSMUST00000204505.1	TEC	chr6:46045143-46049080
chr6	46049154	46049586	-	RMER19C	LTR	ERVK	chr6	46049157	46049159	+	ENSMUST00000205029.1,ENSMUSG00000107571.1	Gm43877	ENSMUSG00000107571.1	ENSMUST00000205029.1	TEC	chr6:46049158-46051395
chr6	46413691	46414079	-	MTE2b	LTR	ERVL-MaLR	chr6	46413755	46413757	+	ENSMUST00000203051.1,ENSMUSG00000107442.1	Gm43881	ENSMUSG00000107442.1	ENSMUST00000203051.1	TEC	chr6:46413756-46416285
chr6	47637142	47637217	+	HY5	scRNA	scRNA	chr6	47637142	47637144	+	ENSMUST00000157272.1,ENSMUSG00000087897.1	Gm25283	ENSMUSG00000087897.1	ENSMUST00000157272.1	misc_RNA	chr6:47637143-47637219
chr6	47781623	47781724	+	HY3	scRNA	scRNA	chr6	47781623	47781625	+	ENSMUST00000083011.1,ENSMUSG00000064945.1	Rny3	ENSMUSG00000064945.1	ENSMUST00000083011.1	misc_RNA	chr6:47781624-47781725
chr6	47788069	47788180	-	HY1	scRNA	scRNA	chr6	47788179	47788181	-	ENSMUST00000083767.1,ENSMUSG00000065701.1	Rny1	ENSMUSG00000065701.1	ENSMUST00000083767.1	misc_RNA	chr6:47788069-47788180
chr6	47877160	47877219	+	A-rich	Low_complexity	Low_complexity	chr6	47877203	47877205	+	ENSMUST00000061890.7,ENSMUSG00000025821.9	Zfp282	ENSMUSG00000025821.9	ENSMUST00000061890.7	protein_coding	chr6:47877204-47908485
chr6	47925950	47926360	-	MTC	LTR	ERVL-MaLR	chr6	47926305	47926307	+	ENSMUST00000156500.1,ENSMUSG00000052763.7	Zfp212	ENSMUSG00000052763.7	ENSMUST00000156500.1	protein_coding	chr6:47926306-47927146
chr6	47945843	47945932	+	MurSatRep1	Unknown	Unknown	chr6	47945888	47945890	+	ENSMUST00000130463.9,ENSMUSG00000072653.13	Zfp783	ENSMUSG00000072653.13	ENSMUST00000130463.9	transcribed_unprocessed_pseudogene	chr6:47945889-47955913
chr6	47945843	47945932	+	MurSatRep1	Unknown	Unknown	chr6	47945901	47945903	+	ENSMUST00000135828.7,ENSMUSG00000072653.13	Zfp783	ENSMUSG00000072653.13	ENSMUST00000135828.7	transcribed_unprocessed_pseudogene	chr6:47945902-47953575
chr6	48045945	48046116	-	MIRb	SINE	MIR	chr6	48045954	48045956	-	ENSMUST00000203645.1,ENSMUSG00000108101.1	Gm45738	ENSMUSG00000108101.1	ENSMUST00000203645.1	sense_intronic	chr6:48045548-48045955
chr6	48048029	48048128	+	GC_rich	Low_complexity	Low_complexity	chr6	48048113	48048115	-	ENSMUST00000114583.7,ENSMUSG00000071477.10	Zfp777	ENSMUSG00000071477.10	ENSMUST00000114583.7	protein_coding	chr6:48024188-48048114
chr6	48048029	48048128	+	GC_rich	Low_complexity	Low_complexity	chr6	48048113	48048115	-	ENSMUST00000147281.1,ENSMUSG00000071477.10	Zfp777	ENSMUSG00000071477.10	ENSMUST00000147281.1	protein_coding	chr6:48044163-48048114
chr6	48289227	48289288	+	U4	snRNA	snRNA	chr6	48289227	48289229	+	ENSMUST00000175147.1,ENSMUSG00000092888.1	Gm22122	ENSMUSG00000092888.1	ENSMUST00000175147.1	snRNA	chr6:48289228-48289427
chr6	48420548	48420842	+	RMER13A2	LTR	ERVK	chr6	48420768	48420770	+	ENSMUST00000175344.1,ENSMUSG00000093085.1	Gm24325	ENSMUSG00000093085.1	ENSMUST00000175344.1	miRNA	chr6:48420769-48420842
chr6	48605396	48605725	+	ORR1A1	LTR	ERVL-MaLR	chr6	48605537	48605539	+	ENSMUST00000204042.1,ENSMUSG00000007216.6	Zfp775	ENSMUSG00000007216.6	ENSMUST00000204042.1	protein_coding	chr6:48605538-48619742
chr6	48755197	48755618	-	BGLII	LTR	ERVK	chr6	48755337	48755339	+	ENSMUST00000204490.1,ENSMUSG00000107481.1	4833403J16Rik	ENSMUSG00000107481.1	ENSMUST00000204490.1	lincRNA	chr6:48755338-48756368
chr6	48755964	48756450	+	LTRIS4A	LTR	ERV1	chr6	48755985	48755987	-	ENSMUST00000205203.1,ENSMUSG00000108298.1	Gm44226	ENSMUSG00000108298.1	ENSMUST00000205203.1	lincRNA	chr6:48754230-48755986
chr6	48766903	48767004	-	MER81	DNA	hAT-Blackjack	chr6	48766957	48766959	-	ENSMUST00000038811.9,ENSMUSG00000039264.9	Gimap3	ENSMUSG00000039264.9	ENSMUST00000038811.9	protein_coding	chr6:48764466-48766958
chr6	49082496	49082658	-	L1_Rod	LINE	L1	chr6	49082584	49082586	+	ENSMUST00000139726.1,ENSMUSG00000029815.12	Malsu1	ENSMUSG00000029815.12	ENSMUST00000139726.1	protein_coding	chr6:49082585-49084678
chr6	49254742	49254890	+	B1_Mus1	SINE	Alu	chr6	49254850	49254852	+	ENSMUST00000204899.1,ENSMUSG00000107962.1	Gm43980	ENSMUSG00000107962.1	ENSMUST00000204899.1	TEC	chr6:49254851-49256462
chr6	49367634	49367797	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	49367738	49367740	+	ENSMUST00000060561.14,ENSMUSG00000047115.15	Fam221a	ENSMUSG00000047115.15	ENSMUST00000060561.14	protein_coding	chr6:49367739-49390539
chr6	49387001	49387571	-	RLTR12B	LTR	ERVK	chr6	49387478	49387480	+	ENSMUST00000203182.1,ENSMUSG00000047115.15	Fam221a	ENSMUSG00000047115.15	ENSMUST00000203182.1	protein_coding	chr6:49387479-49389218
chr6	49858761	49858941	+	C-rich	Low_complexity	Low_complexity	chr6	49858845	49858847	-	ENSMUST00000205019.1,ENSMUSG00000107664.1	Gm18007	ENSMUSG00000107664.1	ENSMUST00000205019.1	processed_pseudogene	chr6:49858003-49858846
chr6	50050957	50051340	-	MLT1F	LTR	ERVL-MaLR	chr6	50051185	50051187	+	ENSMUST00000204812.1,ENSMUSG00000108071.1	Gm3455	ENSMUSG00000108071.1	ENSMUST00000204812.1	lincRNA	chr6:50051186-50107628
chr6	50397084	50397333	+	MTD	LTR	ERVL-MaLR	chr6	50397149	50397151	-	ENSMUST00000136926.2,ENSMUSG00000029822.15	Osbpl3	ENSMUSG00000029822.15	ENSMUST00000136926.2	protein_coding	chr6:50352820-50397150
chr6	50572277	50572555	-	RMER15	LTR	ERVL	chr6	50572397	50572399	+	ENSMUST00000184470.1,ENSMUSG00000099221.1	Mir6371	ENSMUSG00000099221.1	ENSMUST00000184470.1	miRNA	chr6:50572398-50572508
chr6	51477312	51477458	-	B1_Mus2	SINE	Alu	chr6	51477457	51477459	+	ENSMUST00000203404.1,ENSMUSG00000029836.15	Cbx3	ENSMUSG00000029836.15	ENSMUST00000203404.1	protein_coding	chr6:51477458-51480383
chr6	51477458	51477642	-	B2_Mm2	SINE	B2	chr6	51477457	51477459	+	ENSMUST00000203404.1,ENSMUSG00000029836.15	Cbx3	ENSMUSG00000029836.15	ENSMUST00000203404.1	protein_coding	chr6:51477458-51480383
chr6	51523868	51523918	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	51523900	51523902	+	ENSMUST00000049152.14,ENSMUSG00000038301.15	Snx10	ENSMUSG00000038301.15	ENSMUST00000049152.14	protein_coding	chr6:51523901-51590679
chr6	51621593	51621735	-	B1_Mur3	SINE	Alu	chr6	51621631	51621633	+	ENSMUST00000175195.1,ENSMUSG00000094528.1	Gm22914	ENSMUSG00000094528.1	ENSMUST00000175195.1	miRNA	chr6:51621632-51621708
chr6	51872417	51872834	+	L1_Mus1	LINE	L1	chr6	51872669	51872671	-	ENSMUST00000205112.1,ENSMUSG00000059182.7	Skap2	ENSMUSG00000059182.7	ENSMUST00000205112.1	protein_coding	chr6:51870228-51872670
chr6	52227348	52227481	+	CT-rich	Low_complexity	Low_complexity	chr6	52227369	52227371	-	ENSMUST00000048680.7,ENSMUSG00000038227.15	Hoxa9	ENSMUSG00000038227.15	ENSMUST00000048680.7	protein_coding	chr6:52223100-52227370
chr6	52260837	52260940	+	GC_rich	Low_complexity	Low_complexity	chr6	52260879	52260881	-	ENSMUST00000047993.9,ENSMUSG00000038203.18	Hoxa13	ENSMUSG00000038203.18	ENSMUST00000047993.9	protein_coding	chr6:52258853-52260880
chr6	52740762	52740902	-	B1_Mur2	SINE	Alu	chr6	52740876	52740878	+	ENSMUST00000147513.1,ENSMUSG00000004535.12	Tax1bp1	ENSMUSG00000004535.12	ENSMUST00000147513.1	protein_coding	chr6:52740877-52742804
chr6	52909508	52909720	+	LTR33	LTR	ERVL	chr6	52909619	52909621	-	ENSMUST00000136250.5,ENSMUSG00000063568.11	Jazf1	ENSMUSG00000063568.11	ENSMUST00000136250.5	protein_coding	chr6:52768797-52909620
chr6	53068610	53068765	+	G-rich	Low_complexity	Low_complexity	chr6	53068630	53068632	-	ENSMUST00000074541.5,ENSMUSG00000063568.11	Jazf1	ENSMUSG00000063568.11	ENSMUST00000074541.5	protein_coding	chr6:52768797-53068631
chr6	53433973	53434138	+	U1	snRNA	snRNA	chr6	53433973	53433975	+	ENSMUST00000083282.1,ENSMUSG00000096147.1	Gm25818	ENSMUSG00000096147.1	ENSMUST00000083282.1	snRNA	chr6:53433974-53434137
chr6	54681672	54681762	+	G-rich	Low_complexity	Low_complexity	chr6	54681753	54681755	+	ENSMUST00000187701.1,ENSMUSG00000038065.13	Mturn	ENSMUSG00000038065.13	ENSMUST00000187701.1	protein_coding	chr6:54681754-54701141
chr6	54816820	54816921	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	54816915	54816917	+	ENSMUST00000079869.12,ENSMUSG00000058446.14	Znrf2	ENSMUSG00000058446.14	ENSMUST00000079869.12	protein_coding	chr6:54816916-54893500
chr6	54902195	54902493	-	L1ME4a	LINE	L1	chr6	54902421	54902423	+	ENSMUST00000204539.1,ENSMUSG00000107841.1	Gm44185	ENSMUSG00000107841.1	ENSMUST00000204539.1	TEC	chr6:54902422-54905728
chr6	55308579	55308973	-	MTA_Mm	LTR	ERVL-MaLR	chr6	55308904	55308906	-	ENSMUST00000178981.1,ENSMUSG00000093878.1	Gm25458	ENSMUSG00000093878.1	ENSMUST00000178981.1	miRNA	chr6:55308805-55308905
chr6	56369622	56369762	-	RLTR27	LTR	ERVK	chr6	56369630	56369632	-	ENSMUST00000166890.7,ENSMUSG00000004347.16	Pde1c	ENSMUSG00000004347.16	ENSMUST00000166890.7	protein_coding	chr6:56104008-56369631
chr6	56848981	56849413	-	RMER1B	Other	Other	chr6	56849332	56849334	+	ENSMUST00000147159.1,ENSMUSG00000029781.7	Fkbp9	ENSMUSG00000029781.7	ENSMUST00000147159.1	protein_coding	chr6:56849333-56850660
chr6	56889848	56890202	+	MTD	LTR	ERVL-MaLR	chr6	56889862	56889864	-	ENSMUST00000126137.1,ENSMUSG00000029780.14	Nt5c3	ENSMUSG00000029780.14	ENSMUST00000126137.1	protein_coding	chr6:56886665-56889863
chr6	56906535	56906660	+	B4	SINE	B4	chr6	56906581	56906583	-	ENSMUST00000204973.1,ENSMUSG00000108260.1	Gm3793	ENSMUSG00000108260.1	ENSMUST00000204973.1	TEC	chr6:56905911-56906582
chr6	56944520	56945755	-	L1_Rod	LINE	L1	chr6	56944823	56944825	-	ENSMUST00000204905.1,ENSMUSG00000108021.1	Gm44049	ENSMUSG00000108021.1	ENSMUST00000204905.1	TEC	chr6:56941841-56944824
chr6	57206374	57206555	+	(GAAA)n	Simple_repeat	Simple_repeat	chr6	57206511	57206513	+	ENSMUST00000227298.1,ENSMUSG00000064259.2	Vmn1r13	ENSMUSG00000064259.2	ENSMUST00000227298.1	protein_coding	chr6:57206512-57214799
chr6	57565747	57565893	+	B1_Mm	SINE	Alu	chr6	57565792	57565794	+	ENSMUST00000175162.2,ENSMUSG00000092903.2	Gm27896	ENSMUSG00000092903.2	ENSMUST00000175162.2	misc_RNA	chr6:57565793-57566109
chr6	57606465	57606529	+	(TGG)n	Simple_repeat	Simple_repeat	chr6	57606510	57606512	+	ENSMUST00000203506.1,ENSMUSG00000029798.11	Herc6	ENSMUSG00000029798.11	ENSMUST00000203506.1	protein_coding	chr6:57606511-57610888
chr6	57687352	57687631	+	MTC	LTR	ERVL-MaLR	chr6	57687579	57687581	-	ENSMUST00000194579.1,ENSMUSG00000104204.1	Gm37397	ENSMUSG00000104204.1	ENSMUST00000194579.1	TEC	chr6:57684739-57687580
chr6	57845316	57845798	-	Lx9	LINE	L1	chr6	57845585	57845587	+	ENSMUST00000203270.1,ENSMUSG00000107431.1	Gm44114	ENSMUSG00000107431.1	ENSMUST00000203270.1	TEC	chr6:57845586-57848312
chr6	58192280	58192511	-	RMER17C	LTR	ERVK	chr6	58192320	58192322	+	ENSMUST00000203809.1,ENSMUSG00000107521.1	Gm43994	ENSMUSG00000107521.1	ENSMUST00000203809.1	lincRNA	chr6:58192321-58194765
chr6	58521758	58522267	-	ERVB4_1C-LTR_Mm	LTR	ERVK	chr6	58521809	58521811	-	ENSMUST00000204999.1,ENSMUSG00000107960.1	Gm35077	ENSMUSG00000107960.1	ENSMUST00000204999.1	lincRNA	chr6:58457868-58521810
chr6	58584472	58584718	-	RMER17C	LTR	ERVK	chr6	58584522	58584524	+	ENSMUST00000147213.7,ENSMUSG00000029802.13	Abcg2	ENSMUSG00000029802.13	ENSMUST00000147213.7	protein_coding	chr6:58584523-58664530
chr6	58584472	58584718	-	RMER17C	LTR	ERVK	chr6	58584526	58584528	+	ENSMUST00000204924.1,ENSMUSG00000029802.13	Abcg2	ENSMUSG00000029802.13	ENSMUST00000204924.1	protein_coding	chr6:58584527-58586560
chr6	58595933	58595975	+	(TG)n	Simple_repeat	Simple_repeat	chr6	58595974	58595976	+	ENSMUST00000148008.1,ENSMUSG00000029802.13	Abcg2	ENSMUSG00000029802.13	ENSMUST00000148008.1	protein_coding	chr6:58595975-58655808
chr6	58831394	58831478	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr6	58831464	58831466	+	ENSMUST00000141600.7,ENSMUSG00000029804.17	Herc3	ENSMUSG00000029804.17	ENSMUST00000141600.7	protein_coding	chr6:58831465-58843728
chr6	58831770	58832040	-	L1M4b	LINE	L1	chr6	58831860	58831862	+	ENSMUST00000031823.11,ENSMUSG00000029804.17	Herc3	ENSMUSG00000029804.17	ENSMUST00000031823.11	protein_coding	chr6:58831861-58904081
chr6	60031710	60032112	+	L1_Mm	LINE	L1	chr6	60031966	60031968	+	ENSMUST00000101355.8,ENSMUSG00000073045.9	Gm5570	ENSMUSG00000073045.9	ENSMUST00000101355.8	lincRNA	chr6:60031967-60150045
chr6	60250791	60250907	+	5S	rRNA	rRNA	chr6	60250791	60250793	+	ENSMUST00000082581.1,ENSMUSG00000064515.1	n-R5s162	ENSMUSG00000064515.1	ENSMUST00000082581.1	rRNA	chr6:60250792-60250910
chr6	60795818	60796434	-	L1Md_F2	LINE	L1	chr6	60795866	60795868	-	ENSMUST00000204452.1,ENSMUSG00000108168.1	Gm43864	ENSMUSG00000108168.1	ENSMUST00000204452.1	TEC	chr6:60791840-60795867
chr6	60924704	60925035	-	IAPEY2_LTR	LTR	ERVK	chr6	60924975	60924977	+	ENSMUST00000145763.1,ENSMUSG00000054641.10	Mmrn1	ENSMUSG00000054641.10	ENSMUST00000145763.1	protein_coding	chr6:60924976-60946118
chr6	61147797	61147982	-	MLT1A0	LTR	ERVL-MaLR	chr6	61147906	61147908	-	ENSMUST00000203274.1,ENSMUSG00000107652.1	Gm43894	ENSMUSG00000107652.1	ENSMUST00000203274.1	lincRNA	chr6:61147220-61147907
chr6	61174445	61174679	+	MLT1E	LTR	ERVL-MaLR	chr6	61174524	61174526	-	ENSMUST00000204848.1,ENSMUSG00000097924.2	A730020E08Rik	ENSMUSG00000097924.2	ENSMUST00000204848.1	bidirectional_promoter_lncRNA	chr6:61172293-61174525
chr6	61180283	61180457	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	61180323	61180325	+	ENSMUST00000126214.7,ENSMUSG00000039578.17	Ccser1	ENSMUSG00000039578.17	ENSMUST00000126214.7	protein_coding	chr6:61180324-62382865
chr6	61784741	61785286	+	MT2_Mm	LTR	ERVL	chr6	61785110	61785112	+	ENSMUST00000203850.1,ENSMUSG00000039578.17	Ccser1	ENSMUSG00000039578.17	ENSMUST00000203850.1	protein_coding	chr6:61785111-61820121
chr6	61974927	61976097	+	L1_Mur3	LINE	L1	chr6	61975097	61975099	+	ENSMUST00000203440.1,ENSMUSG00000108246.1	Gm43896	ENSMUSG00000108246.1	ENSMUST00000203440.1	TEC	chr6:61975098-61977129
chr6	62630462	62630596	+	MTD	LTR	ERVL-MaLR	chr6	62630580	62630582	+	ENSMUST00000204595.1,ENSMUSG00000107957.1	Gm44088	ENSMUSG00000107957.1	ENSMUST00000204595.1	processed_pseudogene	chr6:62630581-62630817
chr6	62753781	62756819	-	MMERVK10C-int	LTR	ERVK	chr6	62756796	62756798	+	ENSMUST00000204470.1,ENSMUSG00000108174.1	Gm44092	ENSMUSG00000108174.1	ENSMUST00000204470.1	processed_pseudogene	chr6:62756797-62757054
chr6	63160231	63160279	+	L1_Mur2	LINE	L1	chr6	63160274	63160276	+	ENSMUST00000205050.1,ENSMUSG00000107484.1	Nasp-ps1	ENSMUSG00000107484.1	ENSMUST00000205050.1	processed_pseudogene	chr6:63160275-63160965
chr6	63200138	63200704	+	L1_Mus2	LINE	L1	chr6	63200145	63200147	-	ENSMUST00000158096.2,ENSMUSG00000088721.2	Gm22212	ENSMUSG00000088721.2	ENSMUST00000158096.2	snRNA	chr6:63200041-63200146
chr6	64041364	64041857	-	MT2_Mm	LTR	ERVL	chr6	64041556	64041558	-	ENSMUST00000203666.1,ENSMUSG00000107864.1	Gm44072	ENSMUSG00000107864.1	ENSMUST00000203666.1	antisense	chr6:64040429-64041557
chr6	64413645	64413749	+	U6	snRNA	snRNA	chr6	64413647	64413649	+	ENSMUST00000082841.1,ENSMUSG00000064775.1	Gm25205	ENSMUSG00000064775.1	ENSMUST00000082841.1	snRNA	chr6:64413648-64413750
chr6	64990861	64990988	-	PB1D9	SINE	Alu	chr6	64990946	64990948	+	ENSMUST00000137642.2,ENSMUSG00000086176.4	Gm15534	ENSMUSG00000086176.4	ENSMUST00000137642.2	processed_pseudogene	chr6:64990947-64991508
chr6	65057511	65057641	+	B1_Mm	SINE	Alu	chr6	65057613	65057615	+	ENSMUST00000204420.1,ENSMUSG00000029920.9	Smarcad1	ENSMUSG00000029920.9	ENSMUST00000204420.1	protein_coding	chr6:65057614-65074857
chr6	65107393	65107575	+	B2_Mm2	SINE	B2	chr6	65107452	65107454	+	ENSMUST00000203104.1,ENSMUSG00000029920.9	Smarcad1	ENSMUSG00000029920.9	ENSMUST00000203104.1	protein_coding	chr6:65107453-65109978
chr6	65122778	65123082	+	B4	SINE	B4	chr6	65122926	65122928	-	ENSMUST00000205250.1,ENSMUSG00000029919.5	Hpgds	ENSMUSG00000029919.5	ENSMUST00000205250.1	protein_coding	chr6:65119037-65122927
chr6	65328013	65328117	-	MYSERV6-int	LTR	ERVK	chr6	65328104	65328106	+	ENSMUST00000204366.1,ENSMUSG00000108052.1	Gm8479	ENSMUSG00000108052.1	ENSMUST00000204366.1	transcribed_processed_pseudogene	chr6:65328105-65329174
chr6	65597553	65597575	+	(GGGA)n	Simple_repeat	Simple_repeat	chr6	65597573	65597575	+	ENSMUST00000204241.1,ENSMUSG00000044162.12	Tnip3	ENSMUSG00000044162.12	ENSMUST00000204241.1	protein_coding	chr6:65597574-65600197
chr6	65989641	65989743	-	U6	snRNA	snRNA	chr6	65989738	65989740	-	ENSMUST00000082457.1,ENSMUSG00000064391.1	Gm23625	ENSMUSG00000064391.1	ENSMUST00000082457.1	snRNA	chr6:65989640-65989739
chr6	66264025	66264648	+	ORR1D1-int	LTR	ERVL-MaLR	chr6	66264154	66264156	+	ENSMUST00000204874.1,ENSMUSG00000107653.1	Gm31520	ENSMUSG00000107653.1	ENSMUST00000204874.1	transcribed_processed_pseudogene	chr6:66264155-66283739
chr6	66734175	66735141	-	L1Md_A	LINE	L1	chr6	66734176	66734178	-	ENSMUST00000203337.1,ENSMUSG00000107721.1	Gm44261	ENSMUSG00000107721.1	ENSMUST00000203337.1	processed_pseudogene	chr6:66733969-66734177
chr6	66742606	66747792	+	L1Md_F2	LINE	L1	chr6	66746016	66746018	+	ENSMUST00000204076.1,ENSMUSG00000108231.1	Gm4045	ENSMUSG00000108231.1	ENSMUST00000204076.1	processed_pseudogene	chr6:66746017-66746326
chr6	66895388	66895482	-	RMER1C	Other	Other	chr6	66895455	66895457	-	ENSMUST00000203383.1,ENSMUSG00000053442.4	4930597O21Rik	ENSMUSG00000053442.4	ENSMUST00000203383.1	processed_transcript	chr6:66894652-66895456
chr6	67000617	67009642	-	L1Md_A	LINE	L1	chr6	67008412	67008414	-	ENSMUST00000205197.1,ENSMUSG00000107634.1	Gm36816	ENSMUSG00000107634.1	ENSMUST00000205197.1	antisense	chr6:66990031-67008413
chr6	67000617	67009642	-	L1Md_A	LINE	L1	chr6	67009259	67009261	-	ENSMUST00000204824.1,ENSMUSG00000107634.1	Gm36816	ENSMUSG00000107634.1	ENSMUST00000204824.1	antisense	chr6:66991080-67009260
chr6	67012349	67012485	+	B1_Mus1	SINE	Alu	chr6	67012484	67012486	+	ENSMUST00000121764.1,ENSMUSG00000084154.1	Gm15644	ENSMUSG00000084154.1	ENSMUST00000121764.1	processed_pseudogene	chr6:67012485-67012871
chr6	67026631	67027045	-	MTD	LTR	ERVL-MaLR	chr6	67027042	67027044	+	ENSMUST00000083053.2,ENSMUSG00000064987.2	Gm25260	ENSMUSG00000064987.2	ENSMUST00000083053.2	snRNA	chr6:67027043-67027176
chr6	67076727	67076788	+	GA-rich	Low_complexity	Low_complexity	chr6	67076759	67076761	+	ENSMUST00000204847.1,ENSMUSG00000087231.7	E230016M11Rik	ENSMUSG00000087231.7	ENSMUST00000204847.1	processed_transcript	chr6:67076760-67080097
chr6	67165112	67165258	+	B1_Mus1	SINE	Alu	chr6	67165202	67165204	+	ENSMUST00000054470.4,ENSMUSG00000097603.3	A430010J10Rik	ENSMUSG00000097603.3	ENSMUST00000054470.4	processed_transcript	chr6:67165203-67165616
chr6	67239554	67240047	-	MT2_Mm	LTR	ERVL	chr6	67239709	67239711	-	ENSMUST00000204022.1,ENSMUSG00000107799.1	Gm38825	ENSMUSG00000107799.1	ENSMUST00000204022.1	antisense	chr6:67179799-67239710
chr6	67779307	67779415	-	MT2C_Mm	LTR	ERVL	chr6	67779327	67779329	-	ENSMUST00000199098.1,ENSMUSG00000104744.1	Gm18980	ENSMUSG00000104744.1	ENSMUST00000199098.1	processed_pseudogene	chr6:67778250-67779328
chr6	67883605	67885007	+	L1Md_F2	LINE	L1	chr6	67883609	67883611	-	ENSMUST00000196364.1,ENSMUSG00000105005.1	Gm9729	ENSMUSG00000105005.1	ENSMUST00000196364.1	processed_pseudogene	chr6:67883346-67883610
chr6	68103451	68103634	+	(TTC)n	Simple_repeat	Simple_repeat	chr6	68103465	68103467	-	ENSMUST00000197416.1,ENSMUSG00000106331.1	Gm5309	ENSMUSG00000106331.1	ENSMUST00000197416.1	processed_pseudogene	chr6:68102790-68103466
chr6	69327172	69327253	+	IAPEY3-int	LTR	ERVK	chr6	69327173	69327175	-	ENSMUST00000198476.1,ENSMUSG00000106222.1	Rprl1	ENSMUSG00000106222.1	ENSMUST00000198476.1	lincRNA	chr6:69326937-69327174
chr6	69516338	69516552	+	7SLRNA	srpRNA	srpRNA	chr6	69516338	69516340	+	ENSMUST00000175005.2,ENSMUSG00000092746.2	Rn7s6	ENSMUSG00000092746.2	ENSMUST00000175005.2	misc_RNA	chr6:69516339-69516629
chr6	69516338	69516552	+	7SLRNA	srpRNA	srpRNA	chr6	69516480	69516482	+	ENSMUST00000196953.1,ENSMUSG00000104690.1	Gm47304	ENSMUSG00000104690.1	ENSMUST00000196953.1	miRNA	chr6:69516481-69516550
chr6	70027776	70028293	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	70028090	70028092	-	ENSMUST00000179335.1,ENSMUSG00000094641.1	Gm23694	ENSMUSG00000094641.1	ENSMUST00000179335.1	miRNA	chr6:70027982-70028091
chr6	70147730	70148247	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	70148044	70148046	-	ENSMUST00000103905.2,ENSMUSG00000096560.1	Gm24096	ENSMUSG00000096560.1	ENSMUST00000103905.2	miRNA	chr6:70147936-70148045
chr6	70607697	70607768	-	MLTR18_MM	LTR	ERVK	chr6	70607737	70607739	+	ENSMUST00000103399.2,ENSMUSG00000076598.3	Igkv3-7	ENSMUSG00000076598.3	ENSMUST00000103399.2	IG_V_gene	chr6:70607738-70608036
chr6	70878456	70878589	+	B1_Mur4	SINE	Alu	chr6	70878560	70878562	+	ENSMUST00000159401.1,ENSMUSG00000031668.14	Eif2ak3	ENSMUSG00000031668.14	ENSMUST00000159401.1	protein_coding	chr6:70878561-70893436
chr6	70885699	70885873	+	B3A	SINE	B2	chr6	70885801	70885803	-	ENSMUST00000199580.1,ENSMUSG00000105776.1	Gm43292	ENSMUSG00000105776.1	ENSMUST00000199580.1	TEC	chr6:70883354-70885802
chr6	70896739	70896780	+	(TC)n	Simple_repeat	Simple_repeat	chr6	70896763	70896765	+	ENSMUST00000161316.1,ENSMUSG00000031668.14	Eif2ak3	ENSMUSG00000031668.14	ENSMUST00000161316.1	protein_coding	chr6:70896764-70900258
chr6	71164593	71164890	-	RMER1B	Other	Other	chr6	71164798	71164800	+	ENSMUST00000204123.1,ENSMUSG00000108206.1	Gm44427	ENSMUSG00000108206.1	ENSMUST00000204123.1	lincRNA	chr6:71164799-71166119
chr6	71435075	71435469	+	MTA_Mm	LTR	ERVL-MaLR	chr6	71435106	71435108	-	ENSMUST00000205157.1,ENSMUSG00000108211.1	Gm44130	ENSMUSG00000108211.1	ENSMUST00000205157.1	TEC	chr6:71432104-71435107
chr6	71451696	71452167	+	MT2C_Mm	LTR	ERVL	chr6	71451991	71451993	+	ENSMUST00000203903.1,ENSMUSG00000108213.1	Gm44172	ENSMUSG00000108213.1	ENSMUST00000203903.1	lincRNA	chr6:71451992-71458998
chr6	71621662	71621838	+	B3A	SINE	B2	chr6	71621673	71621675	-	ENSMUST00000206704.1,ENSMUSG00000053470.13	Kdm3a	ENSMUSG00000053470.13	ENSMUST00000206704.1	protein_coding	chr6:71602743-71621674
chr6	71790606	71790736	-	Kanga1b	DNA	TcMar-Tc2	chr6	71790667	71790669	+	ENSMUST00000206120.1,ENSMUSG00000108802.1	Gm44769	ENSMUSG00000108802.1	ENSMUST00000206120.1	TEC	chr6:71790668-71793476
chr6	71802764	71802959	+	B2_Mm2	SINE	B2	chr6	71802887	71802889	+	ENSMUST00000205395.1,ENSMUSG00000108594.1	Gm44770	ENSMUSG00000108594.1	ENSMUST00000205395.1	TEC	chr6:71802888-71804151
chr6	71863538	71863563	+	AT_rich	Low_complexity	Low_complexity	chr6	71863548	71863550	+	ENSMUST00000205371.1,ENSMUSG00000052337.15	Immt	ENSMUSG00000052337.15	ENSMUST00000205371.1	protein_coding	chr6:71863549-71867024
chr6	71894979	71895139	+	MER20	DNA	hAT-Charlie	chr6	71895133	71895135	-	ENSMUST00000206631.1,ENSMUSG00000063884.6	Ptcd3	ENSMUSG00000063884.6	ENSMUST00000206631.1	protein_coding	chr6:71892978-71895134
chr6	72042094	72042862	-	ORR1C2-int	LTR	ERVL-MaLR	chr6	72042527	72042529	-	ENSMUST00000206867.1,ENSMUSG00000108356.1	9130221F21Rik	ENSMUSG00000108356.1	ENSMUST00000206867.1	lincRNA	chr6:72013896-72042528
chr6	72104192	72104269	+	L2c	LINE	L2	chr6	72104200	72104202	+	ENSMUST00000191298.1,ENSMUSG00000101823.1	Gm29438	ENSMUSG00000101823.1	ENSMUST00000191298.1	TEC	chr6:72104201-72106813
chr6	72121795	72123340	-	RLTR19-int	LTR	ERVK	chr6	72122939	72122941	-	ENSMUST00000206696.1,ENSMUSG00000108709.1	4933431G14Rik	ENSMUSG00000108709.1	ENSMUST00000206696.1	antisense	chr6:72120213-72122940
chr6	72121795	72123340	-	RLTR19-int	LTR	ERVK	chr6	72123196	72123198	-	ENSMUST00000205571.1,ENSMUSG00000108709.1	4933431G14Rik	ENSMUSG00000108709.1	ENSMUST00000205571.1	antisense	chr6:72120213-72123197
chr6	72306050	72306447	+	(CA)n	Simple_repeat	Simple_repeat	chr6	72306405	72306407	+	ENSMUST00000182765.2,ENSMUSG00000056370.15	Sftpb	ENSMUSG00000056370.15	ENSMUST00000182765.2	protein_coding	chr6:72306406-72314045
chr6	72372098	72372246	-	B1_Mus2	SINE	Alu	chr6	72372134	72372136	-	ENSMUST00000206154.1,ENSMUSG00000073002.9	Vamp5	ENSMUSG00000073002.9	ENSMUST00000206154.1	protein_coding	chr6:72368794-72372135
chr6	72545790	72545868	-	MIRc	SINE	MIR	chr6	72545792	72545794	+	ENSMUST00000155188.7,ENSMUSG00000056737.14	Capg	ENSMUSG00000056737.14	ENSMUST00000155188.7	protein_coding	chr6:72545793-72556252
chr6	72629224	72629522	+	MTEb	LTR	ERVL-MaLR	chr6	72629287	72629289	+	ENSMUST00000156497.7,ENSMUSG00000072999.9	Gm15401	ENSMUSG00000072999.9	ENSMUST00000156497.7	antisense	chr6:72629288-72636483
chr6	72638548	72638588	+	C-rich	Low_complexity	Low_complexity	chr6	72638554	72638556	-	ENSMUST00000195777.1,ENSMUSG00000102577.1	Gm37969	ENSMUSG00000102577.1	ENSMUST00000195777.1	TEC	chr6:72635147-72638555
chr6	72652200	72652364	+	B3A	SINE	B2	chr6	72652319	72652321	+	ENSMUST00000192767.1,ENSMUSG00000102983.1	Gm38320	ENSMUSG00000102983.1	ENSMUST00000192767.1	TEC	chr6:72652320-72653600
chr6	72751867	72751979	+	B1_Mur3	SINE	Alu	chr6	72751913	72751915	-	ENSMUST00000193564.1,ENSMUSG00000104501.1	Gm37736	ENSMUSG00000104501.1	ENSMUST00000193564.1	TEC	chr6:72749113-72751914
chr6	72895825	72896025	+	ID_B1	SINE	B4	chr6	72895918	72895920	-	ENSMUST00000205107.1,ENSMUSG00000107610.1	D530018E20Rik	ENSMUSG00000107610.1	ENSMUST00000205107.1	TEC	chr6:72894962-72895919
chr6	72899688	72899725	+	GC_rich	Low_complexity	Low_complexity	chr6	72899702	72899704	-	ENSMUST00000206378.1,ENSMUSG00000055239.10	Kcmf1	ENSMUSG00000055239.10	ENSMUST00000206378.1	protein_coding	chr6:72842985-72899703
chr6	72899978	72900000	+	GC_rich	Low_complexity	Low_complexity	chr6	72899978	72899980	-	ENSMUST00000068697.10,ENSMUSG00000055239.10	Kcmf1	ENSMUSG00000055239.10	ENSMUST00000068697.10	protein_coding	chr6:72841114-72899979
chr6	72952931	72953246	-	ORR1E	LTR	ERVL-MaLR	chr6	72953235	72953237	+	ENSMUST00000180809.2,ENSMUSG00000097569.2	Gm26640	ENSMUSG00000097569.2	ENSMUST00000180809.2	lincRNA	chr6:72953236-72957247
chr6	73141487	73141681	-	U17	snRNA	snRNA	chr6	73141679	73141681	-	ENSMUST00000083138.1,ENSMUSG00000065072.1	Gm24533	ENSMUSG00000065072.1	ENSMUST00000083138.1	snoRNA	chr6:73141485-73141680
chr6	73392074	73392468	+	MTA_Mm	LTR	ERVL-MaLR	chr6	73392141	73392143	+	ENSMUST00000178007.1,ENSMUSG00000093965.1	Gm24370	ENSMUSG00000093965.1	ENSMUST00000178007.1	miRNA	chr6:73392142-73392243
chr6	73608166	73608855	-	RMER17A	LTR	ERVK	chr6	73608672	73608674	-	ENSMUST00000204638.1,ENSMUSG00000107441.1	Gm31747	ENSMUSG00000107441.1	ENSMUST00000204638.1	lincRNA	chr6:73586109-73608673
chr6	74451796	74451904	-	U6	snRNA	snRNA	chr6	74451903	74451905	-	ENSMUST00000082474.1,ENSMUSG00000064408.1	Gm23924	ENSMUSG00000064408.1	ENSMUST00000082474.1	snRNA	chr6:74451797-74451904
chr6	74451904	74451916	-	L1Md_T	LINE	L1	chr6	74451903	74451905	-	ENSMUST00000082474.1,ENSMUSG00000064408.1	Gm23924	ENSMUSG00000064408.1	ENSMUST00000082474.1	snRNA	chr6:74451797-74451904
chr6	74504848	74505367	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	74505163	74505165	-	ENSMUST00000179186.1,ENSMUSG00000096282.1	Gm22254	ENSMUSG00000096282.1	ENSMUST00000179186.1	miRNA	chr6:74505055-74505164
chr6	75974792	75975187	-	MTA_Mm	LTR	ERVL-MaLR	chr6	75974982	75974984	-	ENSMUST00000203510.1,ENSMUSG00000107880.1	Gm44113	ENSMUSG00000107880.1	ENSMUST00000203510.1	lincRNA	chr6:75968046-75974983
chr6	77416404	77416478	+	(GA)n	Simple_repeat	Simple_repeat	chr6	77416417	77416419	-	ENSMUST00000204379.1,ENSMUSG00000108005.1	Gm44435	ENSMUSG00000108005.1	ENSMUST00000204379.1	TEC	chr6:77412300-77416418
chr6	77474133	77474209	+	(CA)n	Simple_repeat	Simple_repeat	chr6	77474194	77474196	-	ENSMUST00000204312.1,ENSMUSG00000107917.1	Gm44235	ENSMUSG00000107917.1	ENSMUST00000204312.1	TEC	chr6:77471138-77474195
chr6	77695701	77695786	+	(TTTG)n	Simple_repeat	Simple_repeat	chr6	77695772	77695774	-	ENSMUST00000205061.1,ENSMUSG00000107483.1	Gm44288	ENSMUSG00000107483.1	ENSMUST00000205061.1	TEC	chr6:77692979-77695773
chr6	78395378	78401471	+	L1Md_T	LINE	L1	chr6	78395622	78395624	+	ENSMUST00000203657.2,ENSMUSG00000023140.4	Reg2	ENSMUSG00000023140.4	ENSMUST00000203657.2	protein_coding	chr6:78395623-78407681
chr6	78422550	78422878	+	ORR1A1	LTR	ERVL-MaLR	chr6	78422710	78422712	+	ENSMUST00000204687.2,ENSMUSG00000059654.7	Reg1	ENSMUSG00000059654.7	ENSMUST00000204687.2	protein_coding	chr6:78422711-78428667
chr6	78422550	78422878	+	ORR1A1	LTR	ERVL-MaLR	chr6	78422770	78422772	+	ENSMUST00000204601.2,ENSMUSG00000059654.7	Reg1	ENSMUSG00000059654.7	ENSMUST00000204601.2	protein_coding	chr6:78422771-78428667
chr6	78911166	78911330	+	U1	snRNA	snRNA	chr6	78911166	78911168	+	ENSMUST00000083352.1,ENSMUSG00000094980.1	Gm23727	ENSMUSG00000094980.1	ENSMUST00000083352.1	snRNA	chr6:78911167-78911330
chr6	79031643	79033745	+	RLTR1B-int	LTR	ERV1	chr6	79032043	79032045	+	ENSMUST00000204808.1,ENSMUSG00000108072.1	Gm20362	ENSMUSG00000108072.1	ENSMUST00000204808.1	lincRNA	chr6:79032044-79035869
chr6	79047695	79048117	-	RLTR13B2	LTR	ERVK	chr6	79048115	79048117	+	ENSMUST00000203518.1,ENSMUSG00000107772.1	Gm5311	ENSMUSG00000107772.1	ENSMUST00000203518.1	processed_pseudogene	chr6:79048116-79048824
chr6	79683616	79689550	-	L1Md_F2	LINE	L1	chr6	79688844	79688846	+	ENSMUST00000204525.1,ENSMUSG00000108027.1	Gm44271	ENSMUSG00000108027.1	ENSMUST00000204525.1	lincRNA	chr6:79688845-79710914
chr6	80302573	80302682	-	RLTR18B	LTR	ERVK	chr6	80302612	80302614	+	ENSMUST00000203354.1,ENSMUSG00000108264.1	Gm20371	ENSMUSG00000108264.1	ENSMUST00000203354.1	TEC	chr6:80302613-80304368
chr6	80318694	80319348	+	L1_Mus3	LINE	L1	chr6	80319191	80319193	+	ENSMUST00000203230.1,ENSMUSG00000107840.1	Gm44241	ENSMUSG00000107840.1	ENSMUST00000203230.1	TEC	chr6:80319192-80320853
chr6	80514519	80514719	-	B3	SINE	B2	chr6	80514593	80514595	+	ENSMUST00000204212.1,ENSMUSG00000107826.1	Gm44242	ENSMUSG00000107826.1	ENSMUST00000204212.1	TEC	chr6:80514594-80517314
chr6	80650921	80657388	-	IAPEz-int	LTR	ERVK	chr6	80655028	80655030	+	ENSMUST00000204106.1,ENSMUSG00000108173.1	Gm44231	ENSMUSG00000108173.1	ENSMUST00000204106.1	TEC	chr6:80655029-80659103
chr6	80827131	80827250	-	RLTR25B	LTR	ERVK	chr6	80827137	80827139	+	ENSMUST00000204868.1,ENSMUSG00000108040.1	Gm43900	ENSMUSG00000108040.1	ENSMUST00000204868.1	TEC	chr6:80827138-80829806
chr6	81638310	81638470	+	U1	snRNA	snRNA	chr6	81638310	81638312	+	ENSMUST00000083278.1,ENSMUSG00000065212.1	Gm26264	ENSMUSG00000065212.1	ENSMUST00000083278.1	snRNA	chr6:81638311-81638469
chr6	81715065	81715271	-	L1M6B	LINE	L1	chr6	81715231	81715233	-	ENSMUST00000203833.1,ENSMUSG00000107419.1	Gm38839	ENSMUSG00000107419.1	ENSMUST00000203833.1	lincRNA	chr6:81675946-81715232
chr6	81895263	81895447	-	ID_B1	SINE	B4	chr6	81895338	81895340	-	ENSMUST00000204079.1,ENSMUSG00000108194.1	1700097M23Rik	ENSMUSG00000108194.1	ENSMUST00000204079.1	TEC	chr6:81893818-81895339
chr6	81962746	81963113	+	MTD	LTR	ERVL-MaLR	chr6	81962857	81962859	-	ENSMUST00000128374.1,ENSMUSG00000030045.10	Mrpl19	ENSMUSG00000030045.10	ENSMUST00000128374.1	protein_coding	chr6:81961974-81962858
chr6	81986704	81986810	+	RSINE1	SINE	B4	chr6	81986742	81986744	-	ENSMUST00000203549.1,ENSMUSG00000108288.1	Gm44202	ENSMUSG00000108288.1	ENSMUST00000203549.1	lincRNA	chr6:81985748-81986743
chr6	82041559	82041635	+	G-rich	Low_complexity	Low_complexity	chr6	82041622	82041624	+	ENSMUST00000042974.14,ENSMUSG00000035104.14	Eva1a	ENSMUSG00000035104.14	ENSMUST00000042974.14	protein_coding	chr6:82041623-82093099
chr6	82805048	82805258	-	MER45B	DNA	hAT-Tip100	chr6	82805082	82805084	-	ENSMUST00000209189.1,ENSMUSG00000109556.1	Gm38843	ENSMUSG00000109556.1	ENSMUST00000209189.1	lincRNA	chr6:82803769-82805083
chr6	82939521	82939563	+	(CAG)n	Simple_repeat	Simple_repeat	chr6	82939544	82939546	-	ENSMUST00000203271.1,ENSMUSG00000000627.15	Sema4f	ENSMUSG00000000627.15	ENSMUST00000203271.1	protein_coding	chr6:82918601-82939545
chr6	83054571	83054615	+	(CA)n	Simple_repeat	Simple_repeat	chr6	83054570	83054572	-	ENSMUST00000089645.12,ENSMUSG00000068329.12	Htra2	ENSMUSG00000068329.12	ENSMUST00000089645.12	protein_coding	chr6:83051266-83054571
chr6	83054571	83054615	+	(CA)n	Simple_repeat	Simple_repeat	chr6	83054570	83054572	-	ENSMUST00000113963.7,ENSMUSG00000068329.12	Htra2	ENSMUSG00000068329.12	ENSMUST00000113963.7	protein_coding	chr6:83051266-83054571
chr6	83054571	83054615	+	(CA)n	Simple_repeat	Simple_repeat	chr6	83054570	83054572	-	ENSMUST00000122955.7,ENSMUSG00000068329.12	Htra2	ENSMUSG00000068329.12	ENSMUST00000122955.7	protein_coding	chr6:83051280-83054571
chr6	83076024	83076201	-	B3	SINE	B2	chr6	83076115	83076117	-	ENSMUST00000193381.1,ENSMUSG00000103189.1	Gm37092	ENSMUSG00000103189.1	ENSMUST00000193381.1	TEC	chr6:83074599-83076116
chr6	83090286	83090432	+	B1_Mur3	SINE	Alu	chr6	83090386	83090388	-	ENSMUST00000175223.1,ENSMUSG00000095323.1	Mir3470a	ENSMUSG00000095323.1	ENSMUST00000175223.1	miRNA	chr6:83090311-83090387
chr6	83121296	83121403	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	83121386	83121388	-	ENSMUST00000146328.3,ENSMUSG00000030035.14	Wbp1	ENSMUSG00000030035.14	ENSMUST00000146328.3	protein_coding	chr6:83119307-83121387
chr6	83122435	83122578	-	B1_Mur2	SINE	Alu	chr6	83122519	83122521	+	ENSMUST00000203069.1,ENSMUSG00000108109.1	Gm44287	ENSMUSG00000108109.1	ENSMUST00000203069.1	antisense	chr6:83122520-83124397
chr6	83165914	83165934	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	83165919	83165921	+	ENSMUST00000077407.11,ENSMUSG00000031865.16	Dctn1	ENSMUSG00000031865.16	ENSMUST00000077407.11	protein_coding	chr6:83165920-83200116
chr6	83165946	83165968	+	GC_rich	Low_complexity	Low_complexity	chr6	83165950	83165952	+	ENSMUST00000113913.7,ENSMUSG00000031865.16	Dctn1	ENSMUSG00000031865.16	ENSMUST00000113913.7	protein_coding	chr6:83165951-83200117
chr6	83287561	83287808	+	B4A	SINE	B4	chr6	83287634	83287636	+	ENSMUST00000131432.1,ENSMUSG00000068323.12	Slc4a5	ENSMUSG00000068323.12	ENSMUST00000131432.1	protein_coding	chr6:83287635-83296745
chr6	83311552	83311648	+	B1F	SINE	Alu	chr6	83311592	83311594	-	ENSMUST00000141193.1,ENSMUSG00000005667.8	Mthfd2	ENSMUSG00000005667.8	ENSMUST00000141193.1	protein_coding	chr6:83309552-83311593
chr6	83311575	83311694	+	B4A	SINE	B4	chr6	83311592	83311594	-	ENSMUST00000141193.1,ENSMUSG00000005667.8	Mthfd2	ENSMUSG00000005667.8	ENSMUST00000141193.1	protein_coding	chr6:83309552-83311593
chr6	83312344	83312441	+	B4A	SINE	B4	chr6	83312404	83312406	-	ENSMUST00000203375.1,ENSMUSG00000005667.8	Mthfd2	ENSMUSG00000005667.8	ENSMUST00000203375.1	protein_coding	chr6:83311345-83312405
chr6	83316885	83316943	-	L1MB3	LINE	L1	chr6	83316942	83316944	-	ENSMUST00000203437.1,ENSMUSG00000108053.1	Gm43890	ENSMUSG00000108053.1	ENSMUST00000203437.1	TEC	chr6:83314145-83316943
chr6	83350819	83351055	+	B4	SINE	B4	chr6	83351039	83351041	+	ENSMUST00000151329.7,ENSMUSG00000045160.14	Bola3	ENSMUSG00000045160.14	ENSMUST00000151329.7	protein_coding	chr6:83351040-83353208
chr6	83350819	83351055	+	B4	SINE	B4	chr6	83351039	83351041	+	ENSMUST00000055875.13,ENSMUSG00000045160.14	Bola3	ENSMUSG00000045160.14	ENSMUST00000055875.13	protein_coding	chr6:83351040-83358416
chr6	83401034	83401157	-	B1F1	SINE	Alu	chr6	83401101	83401103	-	ENSMUST00000184003.1,ENSMUSG00000099045.1	Mir6374	ENSMUSG00000099045.1	ENSMUST00000184003.1	miRNA	chr6:83400996-83401102
chr6	83527550	83528009	-	RMER4A	LTR	ERVK	chr6	83527989	83527991	-	ENSMUST00000121731.7,ENSMUSG00000059430.14	Actg2	ENSMUSG00000059430.14	ENSMUST00000121731.7	protein_coding	chr6:83512912-83527990
chr6	83527550	83528009	-	RMER4A	LTR	ERVK	chr6	83527809	83527811	-	ENSMUST00000152029.1,ENSMUSG00000059430.14	Actg2	ENSMUSG00000059430.14	ENSMUST00000152029.1	protein_coding	chr6:83520683-83527810
chr6	83572664	83573032	-	Lx4B	LINE	L1	chr6	83572728	83572730	-	ENSMUST00000068054.8,ENSMUSG00000006906.10	Stambp	ENSMUSG00000006906.10	ENSMUST00000068054.8	protein_coding	chr6:83543224-83572729
chr6	83591904	83592143	-	7SK	RNA	RNA	chr6	83592142	83592144	-	ENSMUST00000157406.1,ENSMUSG00000088031.1	Gm24990	ENSMUSG00000088031.1	ENSMUST00000157406.1	misc_RNA	chr6:83591821-83592143
chr6	83721289	83721389	+	U6	snRNA	snRNA	chr6	83721295	83721297	+	ENSMUST00000157370.1,ENSMUSG00000087995.1	Gm25054	ENSMUSG00000087995.1	ENSMUST00000157370.1	snRNA	chr6:83721296-83721392
chr6	83751714	83751834	+	C-rich	Low_complexity	Low_complexity	chr6	83751832	83751834	+	ENSMUST00000206652.1,ENSMUSG00000006269.7	Atp6v1b1	ENSMUSG00000006269.7	ENSMUST00000206652.1	protein_coding	chr6:83751833-83753866
chr6	83762482	83762546	-	PB1D10	SINE	Alu	chr6	83762507	83762509	-	ENSMUST00000189129.5,ENSMUSG00000099354.6	1700124L16Rik	ENSMUSG00000099354.6	ENSMUST00000189129.5	antisense	chr6:83761756-83762508
chr6	83796111	83796249	+	B1_Mus1	SINE	Alu	chr6	83796241	83796243	+	ENSMUST00000205681.1,ENSMUSG00000034744.13	Nagk	ENSMUSG00000034744.13	ENSMUST00000205681.1	protein_coding	chr6:83796242-83796993
chr6	83810172	83810533	+	ORR1E	LTR	ERVL-MaLR	chr6	83810197	83810199	-	ENSMUST00000125493.1,ENSMUSG00000045896.14	Paip2b	ENSMUSG00000045896.14	ENSMUST00000125493.1	protein_coding	chr6:83808656-83810198
chr6	83870040	83870102	+	(CA)n	Simple_repeat	Simple_repeat	chr6	83870064	83870066	+	ENSMUST00000206185.1,ENSMUSG00000108750.1	Gm44750	ENSMUSG00000108750.1	ENSMUST00000206185.1	TEC	chr6:83870065-83872287
chr6	83942555	83942748	+	B3A	SINE	B2	chr6	83942639	83942641	+	ENSMUST00000204713.1,ENSMUSG00000030016.14	Zfp638	ENSMUSG00000030016.14	ENSMUST00000204713.1	protein_coding	chr6:83942640-83944719
chr6	84106511	84106552	+	(GGGTG)n	Simple_repeat	Simple_repeat	chr6	84106550	84106552	+	ENSMUST00000152646.1,ENSMUSG00000033788.15	Dysf	ENSMUSG00000033788.15	ENSMUST00000152646.1	protein_coding	chr6:84106551-84116879
chr6	84588599	84588759	+	G-rich	Low_complexity	Low_complexity	chr6	84588637	84588639	-	ENSMUST00000204146.2,ENSMUSG00000063415.12	Cyp26b1	ENSMUSG00000063415.12	ENSMUST00000204146.2	protein_coding	chr6:84571944-84588638
chr6	84920950	84921143	+	L1MC3	LINE	L1	chr6	84921122	84921124	+	ENSMUST00000204154.1,ENSMUSG00000108012.1	Gm44012	ENSMUSG00000108012.1	ENSMUST00000204154.1	antisense	chr6:84921123-84924996
chr6	85066182	85066404	+	7SK	RNA	RNA	chr6	85066182	85066184	+	ENSMUST00000158224.1,ENSMUSG00000088849.1	Gm26353	ENSMUSG00000088849.1	ENSMUST00000158224.1	misc_RNA	chr6:85066183-85066437
chr6	85439094	85439444	-	ORR1B1	LTR	ERVL-MaLR	chr6	85439143	85439145	+	ENSMUST00000204428.1,ENSMUSG00000033706.13	Smyd5	ENSMUSG00000033706.13	ENSMUST00000204428.1	protein_coding	chr6:85439144-85441955
chr6	85451193	85451223	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	85451200	85451202	-	ENSMUST00000146086.7,ENSMUSG00000030008.9	Pradc1	ENSMUSG00000030008.9	ENSMUST00000146086.7	protein_coding	chr6:85447034-85451201
chr6	85451193	85451223	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	85451212	85451214	-	ENSMUST00000122907.1,ENSMUSG00000030008.9	Pradc1	ENSMUSG00000030008.9	ENSMUST00000122907.1	protein_coding	chr6:85447680-85451213
chr6	85460429	85460765	+	MTB_Mm	LTR	ERVL-MaLR	chr6	85460737	85460739	+	ENSMUST00000205096.1,ENSMUSG00000030007.8	Cct7	ENSMUSG00000030007.8	ENSMUST00000205096.1	protein_coding	chr6:85460738-85464910
chr6	85639205	85639612	+	MLT1A0-int	LTR	ERVL-MaLR	chr6	85639462	85639464	+	ENSMUST00000201244.1,ENSMUSG00000063810.7	Alms1	ENSMUSG00000063810.7	ENSMUST00000201244.1	protein_coding	chr6:85639463-85642191
chr6	85792045	85792191	-	B1_Mur3	SINE	Alu	chr6	85792116	85792118	+	ENSMUST00000160606.1,ENSMUSG00000090098.7	Alms1-ps2	ENSMUSG00000090098.7	ENSMUST00000160606.1	transcribed_unprocessed_pseudogene	chr6:85792117-85804057
chr6	85953854	85954045	+	B3A	SINE	B2	chr6	85953941	85953943	-	ENSMUST00000156821.7,ENSMUSG00000030002.15	Dusp11	ENSMUSG00000030002.15	ENSMUST00000156821.7	protein_coding	chr6:85949715-85953942
chr6	86195381	86195407	+	GC_rich	Low_complexity	Low_complexity	chr6	86195389	86195391	+	ENSMUST00000192058.3,ENSMUSG00000029999.14	Tgfa	ENSMUSG00000029999.14	ENSMUST00000192058.3	protein_coding	chr6:86195390-86272029
chr6	86263718	86263992	+	B4	SINE	B4	chr6	86263913	86263915	-	ENSMUST00000191984.2,ENSMUSG00000107745.1	Gm43917	ENSMUSG00000107745.1	ENSMUST00000191984.2	TEC	chr6:86261555-86263914
chr6	86421875	86422064	+	B2_Mm2	SINE	B2	chr6	86421980	86421982	+	ENSMUST00000203546.1,ENSMUSG00000071337.11	Tia1	ENSMUSG00000071337.11	ENSMUST00000203546.1	protein_coding	chr6:86421981-86424634
chr6	86494644	86494791	-	B1_Mus2	SINE	Alu	chr6	86494648	86494650	+	ENSMUST00000190728.1,ENSMUSG00000101210.1	Gm28720	ENSMUSG00000101210.1	ENSMUST00000190728.1	TEC	chr6:86494649-86497804
chr6	86498780	86498857	-	PB1D9	SINE	Alu	chr6	86498780	86498782	+	ENSMUST00000187779.1,ENSMUSG00000100174.1	Gm28719	ENSMUSG00000100174.1	ENSMUST00000187779.1	TEC	chr6:86498781-86500537
chr6	86574157	86574305	-	RSINE1	SINE	B4	chr6	86574160	86574162	-	ENSMUST00000175421.1,ENSMUSG00000093162.1	Gm22184	ENSMUSG00000093162.1	ENSMUST00000175421.1	miRNA	chr6:86574100-86574161
chr6	86591265	86591436	-	L1M2	LINE	L1	chr6	86591429	86591431	+	ENSMUST00000204543.1,ENSMUSG00000108059.1	Gm44369	ENSMUSG00000108059.1	ENSMUST00000204543.1	TEC	chr6:86591430-86593604
chr6	86669155	86669179	+	GC_rich	Low_complexity	Low_complexity	chr6	86669160	86669162	-	ENSMUST00000001184.9,ENSMUSG00000001156.9	Mxd1	ENSMUSG00000001156.9	ENSMUST00000001184.9	protein_coding	chr6:86647042-86669161
chr6	86716886	86716943	+	(TCC)n	Simple_repeat	Simple_repeat	chr6	86716892	86716894	-	ENSMUST00000203741.1,ENSMUSG00000001157.13	Gmcl1	ENSMUSG00000001157.13	ENSMUST00000203741.1	protein_coding	chr6:86714144-86716893
chr6	86745039	86745214	+	(TCC)n	Simple_repeat	Simple_repeat	chr6	86745056	86745058	-	ENSMUST00000135921.1,ENSMUSG00000029994.17	Anxa4	ENSMUSG00000029994.17	ENSMUST00000135921.1	protein_coding	chr6:86737655-86745057
chr6	86849453	86849543	+	G-rich	Low_complexity	Low_complexity	chr6	86849516	86849518	+	ENSMUST00000089519.12,ENSMUSG00000057230.13	Aak1	ENSMUSG00000057230.13	ENSMUST00000089519.12	protein_coding	chr6:86849517-87003223
chr6	86849453	86849543	+	G-rich	Low_complexity	Low_complexity	chr6	86849531	86849533	+	ENSMUST00000204414.2,ENSMUSG00000057230.13	Aak1	ENSMUSG00000057230.13	ENSMUST00000204414.2	protein_coding	chr6:86849532-86935512
chr6	86862760	86862965	-	B4	SINE	B4	chr6	86862872	86862874	+	ENSMUST00000204162.1,ENSMUSG00000108216.1	Gm44153	ENSMUSG00000108216.1	ENSMUST00000204162.1	TEC	chr6:86862873-86864452
chr6	86873683	86873795	-	PB1D10	SINE	Alu	chr6	86873785	86873787	+	ENSMUST00000205007.1,ENSMUSG00000108152.1	Gm44152	ENSMUSG00000108152.1	ENSMUST00000205007.1	TEC	chr6:86873786-86875476
chr6	86961508	86961656	+	B1_Mus1	SINE	Alu	chr6	86961640	86961642	+	ENSMUST00000204381.1,ENSMUSG00000107576.1	Gm44093	ENSMUSG00000107576.1	ENSMUST00000204381.1	TEC	chr6:86961641-86963442
chr6	86976448	86976559	-	PB1D10	SINE	Alu	chr6	86976528	86976530	+	ENSMUST00000205212.1,ENSMUSG00000107688.1	Gm44091	ENSMUSG00000107688.1	ENSMUST00000205212.1	sense_intronic	chr6:86976529-86977177
chr6	87009048	87009466	+	BGLII	LTR	ERVK	chr6	87009235	87009237	+	ENSMUST00000120240.7,ENSMUSG00000029993.16	Nfu1	ENSMUSG00000029993.16	ENSMUST00000120240.7	protein_coding	chr6:87009236-87028461
chr6	87076789	87076937	-	B1_Mur1	SINE	Alu	chr6	87076807	87076809	+	ENSMUST00000146410.1,ENSMUSG00000029992.14	Gfpt1	ENSMUSG00000029992.14	ENSMUST00000146410.1	protein_coding	chr6:87076808-87086356
chr6	87104546	87104924	+	MTD	LTR	ERVL-MaLR	chr6	87104745	87104747	+	ENSMUST00000170124.3,ENSMUSG00000090891.3	D6Ertd527e	ENSMUSG00000090891.3	ENSMUST00000170124.3	protein_coding	chr6:87104746-87112940
chr6	87104546	87104924	+	MTD	LTR	ERVL-MaLR	chr6	87104747	87104749	+	ENSMUST00000204927.1,ENSMUSG00000090891.3	D6Ertd527e	ENSMUSG00000090891.3	ENSMUST00000204927.1	protein_coding	chr6:87104748-87112996
chr6	87104546	87104924	+	MTD	LTR	ERVL-MaLR	chr6	87104747	87104749	+	ENSMUST00000203747.1,ENSMUSG00000090891.3	D6Ertd527e	ENSMUSG00000090891.3	ENSMUST00000203747.1	protein_coding	chr6:87104748-87112997
chr6	87104546	87104924	+	MTD	LTR	ERVL-MaLR	chr6	87104781	87104783	+	ENSMUST00000203725.1,ENSMUSG00000090891.3	D6Ertd527e	ENSMUSG00000090891.3	ENSMUST00000203725.1	protein_coding	chr6:87104782-87111407
chr6	87104546	87104924	+	MTD	LTR	ERVL-MaLR	chr6	87104812	87104814	+	ENSMUST00000205257.1,ENSMUSG00000090891.3	D6Ertd527e	ENSMUSG00000090891.3	ENSMUST00000205257.1	protein_coding	chr6:87104813-87111399
chr6	87140828	87140873	+	(CA)n	Simple_repeat	Simple_repeat	chr6	87140851	87140853	-	ENSMUST00000204151.1,ENSMUSG00000108195.1	Gm44415	ENSMUSG00000108195.1	ENSMUST00000204151.1	TEC	chr6:87138741-87140852
chr6	87281148	87281231	+	5S	rRNA	rRNA	chr6	87281148	87281150	+	ENSMUST00000122664.1,ENSMUSG00000084613.1	n-R5s164	ENSMUSG00000084613.1	ENSMUST00000122664.1	rRNA	chr6:87281149-87281260
chr6	87334771	87334878	+	MER20	DNA	hAT-Charlie	chr6	87334859	87334861	-	ENSMUST00000203660.1,ENSMUSG00000108143.1	Gm44414	ENSMUSG00000108143.1	ENSMUST00000203660.1	TEC	chr6:87332752-87334860
chr6	87335812	87335847	+	(T)n	Simple_repeat	Simple_repeat	chr6	87335820	87335822	-	ENSMUST00000203563.1,ENSMUSG00000033420.12	Antxr1	ENSMUSG00000033420.12	ENSMUST00000203563.1	protein_coding	chr6:87280523-87335821
chr6	87798976	87799366	+	ORR1B1	LTR	ERVL-MaLR	chr6	87799226	87799228	-	ENSMUST00000203746.1,ENSMUSG00000108064.1	Gm44423	ENSMUSG00000108064.1	ENSMUST00000203746.1	TEC	chr6:87796070-87799227
chr6	87832836	87833025	+	B2_Mm1a	SINE	B2	chr6	87832865	87832867	-	ENSMUST00000205226.1,ENSMUSG00000108042.1	B130021K23Rik	ENSMUSG00000108042.1	ENSMUST00000205226.1	TEC	chr6:87830274-87832866
chr6	87908650	87908827	+	B3	SINE	B2	chr6	87908771	87908773	+	ENSMUST00000127614.1,ENSMUSG00000030058.17	Copg1	ENSMUSG00000030058.17	ENSMUST00000127614.1	protein_coding	chr6:87908772-87910054
chr6	87986118	87986262	-	B1_Mus1	SINE	Alu	chr6	87986190	87986192	+	ENSMUST00000204835.1,ENSMUSG00000108049.1	Gm44168	ENSMUSG00000108049.1	ENSMUST00000204835.1	TEC	chr6:87986191-87989729
chr6	88044956	88045025	+	C-rich	Low_complexity	Low_complexity	chr6	88045016	88045018	-	ENSMUST00000113598.7,ENSMUSG00000079477.9	Rab7	ENSMUSG00000079477.9	ENSMUST00000113598.7	protein_coding	chr6:87999117-88045017
chr6	88506315	88506446	-	B1_Mur4	SINE	Alu	chr6	88506370	88506372	-	ENSMUST00000136103.1,ENSMUSG00000030082.14	Sec61a1	ENSMUSG00000030082.14	ENSMUST00000136103.1	protein_coding	chr6:88504801-88506371
chr6	88515942	88516283	+	MTEb	LTR	ERVL-MaLR	chr6	88515979	88515981	-	ENSMUST00000130807.1,ENSMUSG00000030082.14	Sec61a1	ENSMUSG00000030082.14	ENSMUST00000130807.1	protein_coding	chr6:88514207-88515980
chr6	88518803	88518840	+	GC_rich	Low_complexity	Low_complexity	chr6	88518827	88518829	-	ENSMUST00000139676.7,ENSMUSG00000030082.14	Sec61a1	ENSMUSG00000030082.14	ENSMUST00000139676.7	protein_coding	chr6:88515326-88518828
chr6	88637518	88638375	-	RMER19B	LTR	ERVK	chr6	88637949	88637951	-	ENSMUST00000184664.1,ENSMUSG00000033182.12	Kbtbd12	ENSMUSG00000033182.12	ENSMUST00000184664.1	protein_coding	chr6:88618617-88637950
chr6	88724372	88724429	+	GC_rich	Low_complexity	Low_complexity	chr6	88724411	88724413	+	ENSMUST00000113585.8,ENSMUSG00000033174.17	Mgll	ENSMUSG00000033174.17	ENSMUST00000113585.8	protein_coding	chr6:88724412-88828360
chr6	88725850	88725899	+	CT-rich	Low_complexity	Low_complexity	chr6	88725859	88725861	-	ENSMUST00000181355.3,ENSMUSG00000097730.3	Gm26588	ENSMUSG00000097730.3	ENSMUST00000181355.3	antisense	chr6:88716422-88725860
chr6	88802237	88802295	+	ID4_	SINE	ID	chr6	88802242	88802244	+	ENSMUST00000203158.1,ENSMUSG00000107966.1	Gm44001	ENSMUSG00000107966.1	ENSMUST00000203158.1	TEC	chr6:88802243-88806015
chr6	88874765	88874840	+	GC_rich	Low_complexity	Low_complexity	chr6	88874795	88874797	-	ENSMUST00000145780.1,ENSMUSG00000033152.13	Podxl2	ENSMUSG00000033152.13	ENSMUST00000145780.1	protein_coding	chr6:88849679-88874796
chr6	88874918	88875059	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	88875043	88875045	-	ENSMUST00000145944.2,ENSMUSG00000033152.13	Podxl2	ENSMUSG00000033152.13	ENSMUST00000145944.2	protein_coding	chr6:88842579-88875044
chr6	88874918	88875059	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	88874988	88874990	-	ENSMUST00000153852.1,ENSMUSG00000033152.13	Podxl2	ENSMUSG00000033152.13	ENSMUST00000153852.1	protein_coding	chr6:88864276-88874989
chr6	88905590	88905749	+	L2a	LINE	L2	chr6	88905633	88905635	+	ENSMUST00000144405.2,ENSMUSG00000002871.14	Tpra1	ENSMUSG00000002871.14	ENSMUST00000144405.2	protein_coding	chr6:88905634-88909301
chr6	88905897	88905976	-	MLT1J	LTR	ERVL-MaLR	chr6	88905945	88905947	+	ENSMUST00000203185.2,ENSMUSG00000002871.14	Tpra1	ENSMUSG00000002871.14	ENSMUST00000203185.2	protein_coding	chr6:88905946-88912231
chr6	88905897	88905976	-	MLT1J	LTR	ERVL-MaLR	chr6	88905954	88905956	+	ENSMUST00000151379.1,ENSMUSG00000002871.14	Tpra1	ENSMUSG00000002871.14	ENSMUST00000151379.1	protein_coding	chr6:88905955-88907760
chr6	88905897	88905976	-	MLT1J	LTR	ERVL-MaLR	chr6	88905956	88905958	+	ENSMUST00000203648.2,ENSMUSG00000002871.14	Tpra1	ENSMUSG00000002871.14	ENSMUST00000203648.2	protein_coding	chr6:88905957-88911747
chr6	88905897	88905976	-	MLT1J	LTR	ERVL-MaLR	chr6	88905974	88905976	+	ENSMUST00000128790.7,ENSMUSG00000002871.14	Tpra1	ENSMUSG00000002871.14	ENSMUST00000128790.7	protein_coding	chr6:88905975-88910820
chr6	88910144	88910197	-	MIR3	SINE	MIR	chr6	88910157	88910159	+	ENSMUST00000148874.2,ENSMUSG00000002871.14	Tpra1	ENSMUSG00000002871.14	ENSMUST00000148874.2	protein_coding	chr6:88910158-88910949
chr6	89285551	89285710	+	(CAGAC)n	Simple_repeat	Simple_repeat	chr6	89285693	89285695	-	ENSMUST00000204566.1,ENSMUSG00000107622.1	4930512J16Rik	ENSMUSG00000107622.1	ENSMUST00000204566.1	lincRNA	chr6:89284651-89285694
chr6	89527390	89534263	-	L1Md_T	LINE	L1	chr6	89527454	89527456	-	ENSMUST00000205126.1,ENSMUSG00000107680.1	Gm43903	ENSMUSG00000107680.1	ENSMUST00000205126.1	TEC	chr6:89526839-89527455
chr6	89872472	89872917	-	MTC-int	LTR	ERVL-MaLR	chr6	89872653	89872655	-	ENSMUST00000226741.1,ENSMUSG00000068231.5	Vmn1r43	ENSMUSG00000068231.5	ENSMUST00000226741.1	protein_coding	chr6:89858934-89872654
chr6	90232540	90233682	+	L1Md_F	LINE	L1	chr6	90232816	90232818	-	ENSMUST00000204789.1,ENSMUSG00000092247.2	Gm20426	ENSMUSG00000092247.2	ENSMUST00000204789.1	transcribed_processed_pseudogene	chr6:90131441-90232817
chr6	90232540	90233682	+	L1Md_F	LINE	L1	chr6	90232787	90232789	-	ENSMUST00000173657.1,ENSMUSG00000092247.2	Gm20426	ENSMUSG00000092247.2	ENSMUST00000173657.1	transcribed_processed_pseudogene	chr6:90231728-90232788
chr6	90296024	90296316	+	IAP1-MM_LTR	LTR	ERVK	chr6	90296221	90296223	+	ENSMUST00000205132.1,ENSMUSG00000108119.1	Gm43891	ENSMUSG00000108119.1	ENSMUST00000205132.1	TEC	chr6:90296222-90299333
chr6	90300820	90301307	-	MTC-int	LTR	ERVL-MaLR	chr6	90301218	90301220	+	ENSMUST00000054799.8,ENSMUSG00000049694.13	BC048671	ENSMUSG00000049694.13	ENSMUST00000054799.8	protein_coding	chr6:90301219-90305449
chr6	90513279	90513542	-	MLT1D	LTR	ERVL-MaLR	chr6	90513301	90513303	+	ENSMUST00000204492.1,ENSMUSG00000108271.1	Gm44236	ENSMUSG00000108271.1	ENSMUST00000204492.1	TEC	chr6:90513302-90513814
chr6	90681473	90681532	+	GA-rich	Low_complexity	Low_complexity	chr6	90681519	90681521	-	ENSMUST00000175311.2,ENSMUSG00000093052.2	Gm24816	ENSMUSG00000093052.2	ENSMUST00000175311.2	miRNA	chr6:90681370-90681520
chr6	90794474	90794540	+	(TAAA)n	Simple_repeat	Simple_repeat	chr6	90794474	90794476	-	ENSMUST00000204401.1,ENSMUSG00000107795.1	Gm44105	ENSMUSG00000107795.1	ENSMUST00000204401.1	sense_intronic	chr6:90793896-90794475
chr6	90857425	90857558	-	ORR1C2-int	LTR	ERVL-MaLR	chr6	90857536	90857538	+	ENSMUST00000157754.1,ENSMUSG00000088379.1	Gm25185	ENSMUSG00000088379.1	ENSMUST00000157754.1	snoRNA	chr6:90857537-90857632
chr6	91120851	91121348	+	RLTR10C	LTR	ERVK	chr6	91120934	91120936	-	ENSMUST00000204082.1,ENSMUSG00000107882.1	Gm44278	ENSMUSG00000107882.1	ENSMUST00000204082.1	lincRNA	chr6:91119824-91120935
chr6	91171505	91171835	-	ORR1F	LTR	ERVL-MaLR	chr6	91171763	91171765	+	ENSMUST00000134154.1,ENSMUSG00000034245.10	Hdac11	ENSMUSG00000034245.10	ENSMUST00000134154.1	protein_coding	chr6:91171764-91173283
chr6	91209784	91210074	-	MLT1A1	LTR	ERVL-MaLR	chr6	91210043	91210045	-	ENSMUST00000203115.1,ENSMUSG00000107397.1	4930402H05Rik	ENSMUSG00000107397.1	ENSMUST00000203115.1	TEC	chr6:91207216-91210044
chr6	91476568	91476665	-	MIRb	SINE	MIR	chr6	91476599	91476601	+	ENSMUST00000144246.1,ENSMUSG00000030095.10	Tmem43	ENSMUSG00000030095.10	ENSMUST00000144246.1	protein_coding	chr6:91476600-91478257
chr6	91515854	91515896	+	GC_rich	Low_complexity	Low_complexity	chr6	91515887	91515889	-	ENSMUST00000032182.4,ENSMUSG00000030094.8	Xpc	ENSMUSG00000030094.8	ENSMUST00000032182.4	protein_coding	chr6:91489305-91515888
chr6	91515854	91515896	+	GC_rich	Low_complexity	Low_complexity	chr6	91515883	91515885	-	ENSMUST00000206476.1,ENSMUSG00000030094.8	Xpc	ENSMUSG00000030094.8	ENSMUST00000206476.1	protein_coding	chr6:91506916-91515884
chr6	91709280	91709427	-	B1_Mm	SINE	Alu	chr6	91709405	91709407	+	ENSMUST00000206938.1,ENSMUSG00000108526.1	Gm45828	ENSMUSG00000108526.1	ENSMUST00000206938.1	TEC	chr6:91709406-91711241
chr6	92137974	92138023	+	T-rich	Low_complexity	Low_complexity	chr6	92138014	92138016	+	ENSMUST00000133133.1,ENSMUSG00000005893.14	Nr2c2	ENSMUSG00000005893.14	ENSMUST00000133133.1	protein_coding	chr6:92138015-92139832
chr6	92138174	92138898	-	L1M4	LINE	L1	chr6	92138615	92138617	+	ENSMUST00000204661.1,ENSMUSG00000005893.14	Nr2c2	ENSMUSG00000005893.14	ENSMUST00000204661.1	protein_coding	chr6:92138616-92142233
chr6	92145563	92145874	+	ORR1A1	LTR	ERVL-MaLR	chr6	92145726	92145728	+	ENSMUST00000133321.1,ENSMUSG00000005893.14	Nr2c2	ENSMUSG00000005893.14	ENSMUST00000133321.1	protein_coding	chr6:92145727-92156610
chr6	93241649	93241760	+	G-rich	Low_complexity	Low_complexity	chr6	93241719	93241721	+	ENSMUST00000203784.1,ENSMUSG00000107655.1	Gm44220	ENSMUSG00000107655.1	ENSMUST00000203784.1	TEC	chr6:93241720-93244206
chr6	93793771	93793851	+	U6	snRNA	snRNA	chr6	93793771	93793773	+	ENSMUST00000158002.1,ENSMUSG00000088627.1	Gm23035	ENSMUSG00000088627.1	ENSMUST00000158002.1	snRNA	chr6:93793772-93793877
chr6	94678865	94679040	+	Tigger5	DNA	TcMar-Tigger	chr6	94678864	94678866	-	ENSMUST00000124165.1,ENSMUSG00000030029.14	Lrig1	ENSMUSG00000030029.14	ENSMUST00000124165.1	protein_coding	chr6:94628075-94678865
chr6	95100200	95100307	-	U6	snRNA	snRNA	chr6	95100306	95100308	-	ENSMUST00000178307.1,ENSMUSG00000093999.1	Gm26501	ENSMUSG00000093999.1	ENSMUST00000178307.1	snRNA	chr6:95100201-95100307
chr6	95718793	95718984	+	G-rich	Low_complexity	Low_complexity	chr6	95718799	95718801	-	ENSMUST00000204224.2,ENSMUSG00000061838.7	Suclg2	ENSMUSG00000061838.7	ENSMUST00000204224.2	protein_coding	chr6:95473009-95718800
chr6	95718793	95718984	+	G-rich	Low_complexity	Low_complexity	chr6	95718799	95718801	-	ENSMUST00000203109.1,ENSMUSG00000061838.7	Suclg2	ENSMUSG00000061838.7	ENSMUST00000203109.1	protein_coding	chr6:95654751-95718800
chr6	96469453	96469531	-	U6	snRNA	snRNA	chr6	96469530	96469532	-	ENSMUST00000083305.1,ENSMUSG00000065239.1	Gm22971	ENSMUSG00000065239.1	ENSMUST00000083305.1	snRNA	chr6:96469435-96469531
chr6	97179035	97179108	+	GC_rich	Low_complexity	Low_complexity	chr6	97179036	97179038	-	ENSMUST00000124173.7,ENSMUSG00000030059.15	Tmf1	ENSMUSG00000030059.15	ENSMUST00000124173.7	protein_coding	chr6:97155266-97179037
chr6	97572073	97572238	-	U1	snRNA	snRNA	chr6	97572237	97572239	-	ENSMUST00000083083.1,ENSMUSG00000065017.1	Gm23510	ENSMUSG00000065017.1	ENSMUST00000083083.1	snRNA	chr6:97572076-97572238
chr6	97730438	97730545	+	U6	snRNA	snRNA	chr6	97730438	97730440	+	ENSMUST00000180099.1,ENSMUSG00000094510.1	Gm24565	ENSMUSG00000094510.1	ENSMUST00000180099.1	snRNA	chr6:97730439-97730545
chr6	97790289	97790529	-	Lx5c	LINE	L1	chr6	97790511	97790513	+	ENSMUST00000158839.1,ENSMUSG00000089464.1	Gm23703	ENSMUSG00000089464.1	ENSMUST00000158839.1	snoRNA	chr6:97790512-97790654
chr6	97807037	97807060	+	GC_rich	Low_complexity	Low_complexity	chr6	97807051	97807053	+	ENSMUST00000203884.2,ENSMUSG00000035158.15	Mitf	ENSMUSG00000035158.15	ENSMUST00000203884.2	protein_coding	chr6:97807052-98018593
chr6	97807037	97807060	+	GC_rich	Low_complexity	Low_complexity	chr6	97807057	97807059	+	ENSMUST00000148233.1,ENSMUSG00000035158.15	Mitf	ENSMUSG00000035158.15	ENSMUST00000148233.1	protein_coding	chr6:97807058-97942179
chr6	97807037	97807060	+	GC_rich	Low_complexity	Low_complexity	chr6	97807057	97807059	+	ENSMUST00000043637.13,ENSMUSG00000035158.15	Mitf	ENSMUSG00000035158.15	ENSMUST00000043637.13	protein_coding	chr6:97807058-98021349
chr6	98121777	98121829	+	(GA)n	Simple_repeat	Simple_repeat	chr6	98121795	98121797	+	ENSMUST00000205146.1,ENSMUSG00000107902.1	Gm32592	ENSMUSG00000107902.1	ENSMUST00000205146.1	antisense	chr6:98121796-98248611
chr6	99028291	99028419	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr6	99028312	99028314	-	ENSMUST00000124058.7,ENSMUSG00000030067.17	Foxp1	ENSMUSG00000030067.17	ENSMUST00000124058.7	protein_coding	chr6:98945534-99028313
chr6	99445474	99445636	+	B4A	SINE	B4	chr6	99445606	99445608	-	ENSMUST00000176148.1,ENSMUSG00000030068.4	Gm20696	ENSMUSG00000030068.4	ENSMUST00000176148.1	protein_coding	chr6:99434751-99445607
chr6	99522599	99522674	+	(CG)n	Simple_repeat	Simple_repeat	chr6	99522646	99522648	-	ENSMUST00000177235.7,ENSMUSG00000030067.17	Foxp1	ENSMUSG00000030067.17	ENSMUST00000177235.7	protein_coding	chr6:99260357-99522647
chr6	99575890	99576111	+	7SK	RNA	RNA	chr6	99575890	99575892	+	ENSMUST00000122598.1,ENSMUSG00000084547.1	Gm24936	ENSMUSG00000084547.1	ENSMUST00000122598.1	misc_RNA	chr6:99575891-99576137
chr6	99893535	99893659	+	B1_Mus1	SINE	Alu	chr6	99893546	99893548	-	ENSMUST00000157321.1,ENSMUSG00000087946.1	Gm24248	ENSMUSG00000087946.1	ENSMUST00000157321.1	misc_RNA	chr6:99893226-99893547
chr6	99896539	99896970	+	RLTR35B_MM	LTR	ERVL	chr6	99896844	99896846	-	ENSMUST00000201580.1,ENSMUSG00000107204.1	Gm43067	ENSMUSG00000107204.1	ENSMUST00000201580.1	lincRNA	chr6:99884400-99896845
chr6	99931346	99931560	+	MLT1F	LTR	ERVL-MaLR	chr6	99931548	99931550	-	ENSMUST00000204919.1,ENSMUSG00000107528.1	Gm44442	ENSMUSG00000107528.1	ENSMUST00000204919.1	lincRNA	chr6:99928249-99931549
chr6	99950713	99951075	-	ERVB7_2-LTR_MM	LTR	ERVK	chr6	99950930	99950932	-	ENSMUST00000204298.1,ENSMUSG00000107528.1	Gm44442	ENSMUSG00000107528.1	ENSMUST00000204298.1	lincRNA	chr6:99928248-99950931
chr6	100704669	100704739	+	CT-rich	Low_complexity	Low_complexity	chr6	100704733	100704735	+	ENSMUST00000032157.8,ENSMUSG00000030074.9	Gxylt2	ENSMUSG00000030074.9	ENSMUST00000032157.8	protein_coding	chr6:100704734-100810913
chr6	100791703	100791846	+	B1_Mus2	SINE	Alu	chr6	100791828	100791830	+	ENSMUST00000203856.1,ENSMUSG00000107989.1	Gm19692	ENSMUSG00000107989.1	ENSMUST00000203856.1	TEC	chr6:100791829-100793912
chr6	100960911	100960999	+	RSINE1	SINE	B4	chr6	100960988	100960990	+	ENSMUST00000203303.1,ENSMUSG00000108056.1	Gm43941	ENSMUSG00000108056.1	ENSMUST00000203303.1	processed_pseudogene	chr6:100960989-100962660
chr6	101144009	101144477	-	Lx5	LINE	L1	chr6	101144291	101144293	+	ENSMUST00000204522.1,ENSMUSG00000107954.1	Gm43942	ENSMUSG00000107954.1	ENSMUST00000204522.1	TEC	chr6:101144292-101147150
chr6	101288434	101288987	-	L1_Mus3	LINE	L1	chr6	101288509	101288511	-	ENSMUST00000203503.1,ENSMUSG00000108076.1	9530086O07Rik	ENSMUSG00000108076.1	ENSMUST00000203503.1	TEC	chr6:101285826-101288510
chr6	101354897	101355078	+	C-rich	Low_complexity	Low_complexity	chr6	101355009	101355011	-	ENSMUST00000124884.3,ENSMUSG00000035357.16	Pdzrn3	ENSMUSG00000035357.16	ENSMUST00000124884.3	protein_coding	chr6:101156973-101355010
chr6	101377891	101377935	+	GC_rich	Low_complexity	Low_complexity	chr6	101377896	101377898	-	ENSMUST00000075994.10,ENSMUSG00000035357.16	Pdzrn3	ENSMUSG00000035357.16	ENSMUST00000075994.10	protein_coding	chr6:101149609-101377897
chr6	101782447	101782780	+	MTEb	LTR	ERVL-MaLR	chr6	101782538	101782540	+	ENSMUST00000203073.2,ENSMUSG00000052236.7	Gm9871	ENSMUSG00000052236.7	ENSMUST00000203073.2	lincRNA	chr6:101782539-101801815
chr6	101841091	101841364	-	L2a	LINE	L2	chr6	101841194	101841196	+	ENSMUST00000204336.1,ENSMUSG00000107579.1	Gm44176	ENSMUSG00000107579.1	ENSMUST00000204336.1	lincRNA	chr6:101841195-101848050
chr6	101913226	101913300	+	(GA)n	Simple_repeat	Simple_repeat	chr6	101913272	101913274	+	ENSMUST00000204338.1,ENSMUSG00000107421.1	Gm44177	ENSMUSG00000107421.1	ENSMUST00000204338.1	TEC	chr6:101913273-101915939
chr6	102175191	102180460	+	L1Md_T	LINE	L1	chr6	102177111	102177113	-	ENSMUST00000204387.1,ENSMUSG00000108092.1	Gm44189	ENSMUSG00000108092.1	ENSMUST00000204387.1	TEC	chr6:102174030-102177112
chr6	102572989	102573326	-	IAPLTR1a_Mm	LTR	ERVK	chr6	102573100	102573102	-	ENSMUST00000203619.2,ENSMUSG00000030075.10	Cntn3	ENSMUSG00000030075.10	ENSMUST00000203619.2	protein_coding	chr6:102163304-102573101
chr6	102862368	102862475	+	U6	snRNA	snRNA	chr6	102862367	102862369	+	ENSMUST00000158663.1,ENSMUSG00000089288.1	Gm26022	ENSMUSG00000089288.1	ENSMUST00000158663.1	snRNA	chr6:102862368-102862475
chr6	103564263	103564414	+	B1_Mus1	SINE	Alu	chr6	103564355	103564357	+	ENSMUST00000203642.1,ENSMUSG00000107595.1	Gm44441	ENSMUSG00000107595.1	ENSMUST00000203642.1	TEC	chr6:103564356-103566830
chr6	103588207	103588981	+	RLTR25A	LTR	ERVK	chr6	103588703	103588705	+	ENSMUST00000157640.1,ENSMUSG00000088265.1	Gm24784	ENSMUSG00000088265.1	ENSMUST00000157640.1	snRNA	chr6:103588704-103588765
chr6	103605385	103605649	-	B4A	SINE	B4	chr6	103605520	103605522	+	ENSMUST00000203139.1,ENSMUSG00000107511.1	Gm44440	ENSMUSG00000107511.1	ENSMUST00000203139.1	TEC	chr6:103605521-103607893
chr6	105231709	105232608	-	RMER1A	Other	Other	chr6	105232604	105232606	+	ENSMUST00000158962.1,ENSMUSG00000089587.1	Gm23339	ENSMUSG00000089587.1	ENSMUST00000158962.1	snoRNA	chr6:105232605-105232743
chr6	105399582	105399768	+	Lx8	LINE	L1	chr6	105399718	105399720	+	ENSMUST00000179099.1,ENSMUSG00000094357.1	Gm25570	ENSMUSG00000094357.1	ENSMUST00000179099.1	miRNA	chr6:105399719-105399798
chr6	105492561	105492890	-	IAPLTR2a2_Mm	LTR	ERVK	chr6	105492667	105492669	-	ENSMUST00000205113.1,ENSMUSG00000108237.1	Gm19757	ENSMUSG00000108237.1	ENSMUST00000205113.1	lincRNA	chr6:105481266-105492668
chr6	106513482	106513661	-	MER5A	DNA	hAT-Charlie	chr6	106513557	106513559	+	ENSMUST00000132395.3,ENSMUSG00000064293.14	Cntn4	ENSMUSG00000064293.14	ENSMUST00000132395.3	protein_coding	chr6:106513558-106697756
chr6	107001451	107001558	+	U6	snRNA	snRNA	chr6	107001451	107001453	+	ENSMUST00000180326.1,ENSMUSG00000094963.1	Gm22418	ENSMUSG00000094963.1	ENSMUST00000180326.1	snRNA	chr6:107001452-107001558
chr6	107094110	107094158	+	(CAAAAA)n	Simple_repeat	Simple_repeat	chr6	107094114	107094116	-	ENSMUST00000203999.1,ENSMUSG00000107981.1	Gm6064	ENSMUSG00000107981.1	ENSMUST00000203999.1	processed_pseudogene	chr6:107093662-107094115
chr6	107448815	107448952	+	B1_Mus1	SINE	Alu	chr6	107448943	107448945	-	ENSMUST00000184596.1,ENSMUSG00000098494.1	Gm27690	ENSMUSG00000098494.1	ENSMUST00000184596.1	miRNA	chr6:107448819-107448944
chr6	107627530	107627840	-	RLTR27	LTR	ERVK	chr6	107627773	107627775	+	ENSMUST00000203905.1,ENSMUSG00000107496.1	4933431M02Rik	ENSMUSG00000107496.1	ENSMUST00000203905.1	lincRNA	chr6:107627774-107632549
chr6	107888594	107888683	+	L1Md_F3	LINE	L1	chr6	107888680	107888682	+	ENSMUST00000205154.1,ENSMUSG00000108009.1	Gm44279	ENSMUSG00000108009.1	ENSMUST00000205154.1	processed_pseudogene	chr6:107888681-107889152
chr6	108213148	108213210	+	GA-rich	Low_complexity	Low_complexity	chr6	108213201	108213203	+	ENSMUST00000203615.2,ENSMUSG00000030102.11	Itpr1	ENSMUSG00000030102.11	ENSMUST00000203615.2	protein_coding	chr6:108213202-108551109
chr6	108415268	108415408	+	CT-rich	Low_complexity	Low_complexity	chr6	108415269	108415271	+	ENSMUST00000205053.1,ENSMUSG00000030102.11	Itpr1	ENSMUSG00000030102.11	ENSMUST00000205053.1	protein_coding	chr6:108415270-108419001
chr6	108472356	108472718	-	ORR1F	LTR	ERVL-MaLR	chr6	108472574	108472576	-	ENSMUST00000203951.1,ENSMUSG00000108219.1	Gm44101	ENSMUSG00000108219.1	ENSMUST00000203951.1	TEC	chr6:108470355-108472575
chr6	108508106	108508396	-	B4	SINE	B4	chr6	108508312	108508314	+	ENSMUST00000203288.1,ENSMUSG00000030102.11	Itpr1	ENSMUSG00000030102.11	ENSMUST00000203288.1	protein_coding	chr6:108508313-108512930
chr6	111602976	111603263	-	RMER1C	Other	Other	chr6	111603251	111603253	+	ENSMUST00000158980.1,ENSMUSG00000089605.1	Gm22093	ENSMUSG00000089605.1	ENSMUST00000158980.1	rRNA	chr6:111603252-111603362
chr6	111627987	111628224	+	7SK	RNA	RNA	chr6	111627987	111627989	+	ENSMUST00000158459.1,ENSMUSG00000089084.1	Gm24005	ENSMUSG00000089084.1	ENSMUST00000158459.1	misc_RNA	chr6:111627988-111628283
chr6	111999326	111999568	+	7SK	RNA	RNA	chr6	111999326	111999328	+	ENSMUST00000157947.1,ENSMUSG00000088572.1	Gm25454	ENSMUSG00000088572.1	ENSMUST00000157947.1	misc_RNA	chr6:111999327-111999641
chr6	112234183	112234263	-	5S	rRNA	rRNA	chr6	112234261	112234263	-	ENSMUST00000104074.1,ENSMUSG00000077262.1	n-R5s165	ENSMUSG00000077262.1	ENSMUST00000104074.1	rRNA	chr6:112234163-112234262
chr6	112375720	112375757	+	(G)n	Simple_repeat	Simple_repeat	chr6	112375719	112375721	-	ENSMUST00000123254.1,ENSMUSG00000034387.12	Ssu2	ENSMUSG00000034387.12	ENSMUST00000123254.1	protein_coding	chr6:112369275-112375720
chr6	112513101	112513450	-	MTD	LTR	ERVL-MaLR	chr6	112513446	112513448	+	ENSMUST00000185155.1,ENSMUSG00000099205.1	Gm27944	ENSMUSG00000099205.1	ENSMUST00000185155.1	snRNA	chr6:112513447-112513549
chr6	112592966	112593073	-	U6	snRNA	snRNA	chr6	112593072	112593074	-	ENSMUST00000179221.1,ENSMUSG00000094026.1	Gm23002	ENSMUSG00000094026.1	ENSMUST00000179221.1	snRNA	chr6:112592967-112593073
chr6	112593073	112593213	-	B1_Mur2	SINE	Alu	chr6	112593072	112593074	-	ENSMUST00000179221.1,ENSMUSG00000094026.1	Gm23002	ENSMUSG00000094026.1	ENSMUST00000179221.1	snRNA	chr6:112592967-112593073
chr6	112946916	112947039	+	(CA)n	Simple_repeat	Simple_repeat	chr6	112947036	112947038	+	ENSMUST00000204406.1,ENSMUSG00000108103.1	Gm44081	ENSMUSG00000108103.1	ENSMUST00000204406.1	lincRNA	chr6:112947037-112949330
chr6	113035855	113035935	-	U6	snRNA	snRNA	chr6	113035933	113035935	-	ENSMUST00000083375.1,ENSMUSG00000065309.1	Gm23244	ENSMUSG00000065309.1	ENSMUST00000083375.1	snRNA	chr6:113035843-113035934
chr6	113060697	113060799	+	U6	snRNA	snRNA	chr6	113060697	113060699	+	ENSMUST00000104243.1,ENSMUSG00000077431.1	Gm22591	ENSMUSG00000077431.1	ENSMUST00000104243.1	snRNA	chr6:113060698-113060803
chr6	113195340	113195406	+	GC_rich	Low_complexity	Low_complexity	chr6	113195383	113195385	-	ENSMUST00000162280.1,ENSMUSG00000042873.11	Lhfpl4	ENSMUSG00000042873.11	ENSMUST00000162280.1	protein_coding	chr6:113168090-113195384
chr6	113288402	113288574	-	RSINE1	SINE	B4	chr6	113288503	113288505	+	ENSMUST00000134523.7,ENSMUSG00000030270.11	Cpne9	ENSMUSG00000030270.11	ENSMUST00000134523.7	protein_coding	chr6:113288504-113305571
chr6	113307182	113307231	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	113307191	113307193	+	ENSMUST00000113121.7,ENSMUSG00000001632.16	Brpf1	ENSMUSG00000001632.16	ENSMUST00000113121.7	protein_coding	chr6:113307192-113324721
chr6	113307182	113307231	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	113307191	113307193	+	ENSMUST00000113119.7,ENSMUSG00000001632.16	Brpf1	ENSMUSG00000001632.16	ENSMUST00000113119.7	protein_coding	chr6:113307192-113324860
chr6	113307182	113307231	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	113307223	113307225	+	ENSMUST00000113117.3,ENSMUSG00000001632.16	Brpf1	ENSMUSG00000001632.16	ENSMUST00000113117.3	protein_coding	chr6:113307224-113324841
chr6	113320539	113320560	+	(CAG)n	Simple_repeat	Simple_repeat	chr6	113320540	113320542	+	ENSMUST00000131594.1,ENSMUSG00000001632.16	Brpf1	ENSMUSG00000001632.16	ENSMUST00000131594.1	protein_coding	chr6:113320541-113324702
chr6	113377282	113377405	+	MIRb	SINE	MIR	chr6	113377375	113377377	-	ENSMUST00000043333.8,ENSMUSG00000048930.12	Tada3	ENSMUSG00000048930.12	ENSMUST00000043333.8	protein_coding	chr6:113366655-113377376
chr6	113520876	113521069	-	B2_Mm2	SINE	B2	chr6	113520908	113520910	-	ENSMUST00000154605.1,ENSMUSG00000030286.6	Emc3	ENSMUSG00000030286.6	ENSMUST00000154605.1	protein_coding	chr6:113519792-113520909
chr6	113528546	113528694	+	B1_Mus2	SINE	Alu	chr6	113528673	113528675	-	ENSMUST00000175019.1,ENSMUSG00000092760.1	Gm23365	ENSMUSG00000092760.1	ENSMUST00000175019.1	miRNA	chr6:113528550-113528674
chr6	113612272	113612497	-	B4A	SINE	B4	chr6	113612444	113612446	-	ENSMUST00000205219.1,ENSMUSG00000107560.1	Gm44199	ENSMUSG00000107560.1	ENSMUST00000205219.1	antisense	chr6:113610318-113612445
chr6	113623896	113623991	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr6	113623958	113623960	+	ENSMUST00000035673.7,ENSMUSG00000033933.13	Vhl	ENSMUSG00000033933.13	ENSMUST00000035673.7	protein_coding	chr6:113623959-113631633
chr6	113632943	113633351	-	RMER1B	Other	Other	chr6	113633143	113633145	-	ENSMUST00000180964.2,ENSMUSG00000097671.2	1700015O11Rik	ENSMUSG00000097671.2	ENSMUST00000180964.2	lincRNA	chr6:113631649-113633144
chr6	113678987	113679272	-	B4	SINE	B4	chr6	113679218	113679220	-	ENSMUST00000203466.1,ENSMUSG00000107846.1	Gm43963	ENSMUSG00000107846.1	ENSMUST00000203466.1	TEC	chr6:113676732-113679219
chr6	113692759	113693032	+	RMER17C-int	LTR	ERVK	chr6	113692758	113692760	+	ENSMUST00000143948.1,ENSMUSG00000060477.14	Irak2	ENSMUSG00000060477.14	ENSMUST00000143948.1	protein_coding	chr6:113692759-113694007
chr6	113714750	113715133	-	MTD	LTR	ERVL-MaLR	chr6	113714970	113714972	+	ENSMUST00000182250.1,ENSMUSG00000097994.1	Gm26982	ENSMUSG00000097994.1	ENSMUST00000182250.1	antisense	chr6:113714971-113716121
chr6	113719798	113719848	+	(CATA)n	Simple_repeat	Simple_repeat	chr6	113719847	113719849	-	ENSMUST00000203770.2,ENSMUSG00000064177.8	Ghrl	ENSMUSG00000064177.8	ENSMUST00000203770.2	protein_coding	chr6:113716132-113719848
chr6	113725218	113725351	-	ID_B1	SINE	B4	chr6	113725222	113725224	+	ENSMUST00000203364.1,ENSMUSG00000108137.1	Gm44053	ENSMUSG00000108137.1	ENSMUST00000203364.1	lincRNA	chr6:113725223-113726151
chr6	113937549	113937924	+	ORR1F	LTR	ERVL-MaLR	chr6	113937738	113937740	+	ENSMUST00000147045.1,ENSMUSG00000087053.1	Gm15082	ENSMUSG00000087053.1	ENSMUST00000147045.1	antisense	chr6:113937739-113940206
chr6	114004578	114004905	+	MTE2a	LTR	ERVL-MaLR	chr6	114004788	114004790	+	ENSMUST00000138670.2,ENSMUSG00000087083.2	Gm15083	ENSMUSG00000087083.2	ENSMUST00000138670.2	antisense	chr6:114004789-114052265
chr6	114042002	114042061	+	C-rich	Low_complexity	Low_complexity	chr6	114042025	114042027	-	ENSMUST00000101045.9,ENSMUSG00000030302.16	Atp2b2	ENSMUSG00000030302.16	ENSMUST00000101045.9	protein_coding	chr6:113743831-114042026
chr6	114042002	114042061	+	C-rich	Low_complexity	Low_complexity	chr6	114042014	114042016	-	ENSMUST00000152831.7,ENSMUSG00000030302.16	Atp2b2	ENSMUSG00000030302.16	ENSMUST00000152831.7	protein_coding	chr6:113745670-114042015
chr6	114131215	114131257	+	GC_rich	Low_complexity	Low_complexity	chr6	114131240	114131242	+	ENSMUST00000032451.8,ENSMUSG00000030307.8	Slc6a11	ENSMUSG00000030307.8	ENSMUST00000032451.8	protein_coding	chr6:114131241-114249952
chr6	114301215	114301464	+	B4A	SINE	B4	chr6	114301234	114301236	+	ENSMUST00000203100.1,ENSMUSG00000030310.10	Slc6a1	ENSMUSG00000030310.10	ENSMUST00000203100.1	protein_coding	chr6:114301235-114301942
chr6	114313249	114313297	+	(CAAAC)n	Simple_repeat	Simple_repeat	chr6	114313288	114313290	+	ENSMUST00000204540.1,ENSMUSG00000030310.10	Slc6a1	ENSMUSG00000030310.10	ENSMUST00000204540.1	protein_coding	chr6:114313289-114315607
chr6	114397901	114397974	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	114397935	114397937	+	ENSMUST00000088987.2,ENSMUSG00000053004.9	Hrh1	ENSMUSG00000053004.9	ENSMUST00000088987.2	protein_coding	chr6:114397936-114483296
chr6	114458354	114458553	-	L2c	LINE	L2	chr6	114458518	114458520	+	ENSMUST00000160780.1,ENSMUSG00000053004.9	Hrh1	ENSMUSG00000053004.9	ENSMUST00000160780.1	protein_coding	chr6:114458519-114482468
chr6	114657927	114658085	-	L3	LINE	CR1	chr6	114658063	114658065	+	ENSMUST00000182771.3,ENSMUSG00000030314.16	Atg7	ENSMUSG00000030314.16	ENSMUST00000182771.3	protein_coding	chr6:114658064-114673702
chr6	115016340	115016487	+	B1_Mm	SINE	Alu	chr6	115016374	115016376	-	ENSMUST00000144969.1,ENSMUSG00000030316.13	Tamm41	ENSMUSG00000030316.13	ENSMUST00000144969.1	protein_coding	chr6:115008193-115016375
chr6	115099529	115099661	-	MER5A1	DNA	hAT-Charlie	chr6	115099553	115099555	+	ENSMUST00000158509.1,ENSMUSG00000089134.1	Gm24767	ENSMUSG00000089134.1	ENSMUST00000158509.1	miRNA	chr6:115099554-115099648
chr6	115601886	115601931	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	115601901	115601903	+	ENSMUST00000000449.8,ENSMUSG00000000439.9	Mkrn2	ENSMUSG00000000439.9	ENSMUST00000000449.8	protein_coding	chr6:115601902-115622624
chr6	115608038	115608187	+	MTD	LTR	ERVL-MaLR	chr6	115608169	115608171	+	ENSMUST00000204720.1,ENSMUSG00000107949.1	Gm44157	ENSMUSG00000107949.1	ENSMUST00000204720.1	TEC	chr6:115608170-115608579
chr6	115735205	115735388	+	B3	SINE	B2	chr6	115735292	115735294	-	ENSMUST00000151849.1,ENSMUSG00000059900.14	Tmem40	ENSMUSG00000059900.14	ENSMUST00000151849.1	protein_coding	chr6:115729533-115735293
chr6	115750371	115750615	-	7SLRNA	srpRNA	srpRNA	chr6	115750614	115750616	-	ENSMUST00000184176.1,ENSMUSG00000098477.1	Gm27853	ENSMUSG00000098477.1	ENSMUST00000184176.1	misc_RNA	chr6:115750366-115750615
chr6	115775630	115775744	+	MIR	SINE	MIR	chr6	115775656	115775658	+	ENSMUST00000183825.1,ENSMUSG00000099163.1	Mir7660	ENSMUSG00000099163.1	ENSMUST00000183825.1	miRNA	chr6:115775657-115775719
chr6	115824285	115824606	+	RLTRETN_Mm	LTR	ERVK	chr6	115824498	115824500	+	ENSMUST00000203044.2,ENSMUSG00000107429.2	Gm44206	ENSMUSG00000107429.2	ENSMUST00000203044.2	antisense	chr6:115824499-115842525
chr6	115836051	115836294	+	ORR1A3	LTR	ERVL-MaLR	chr6	115836130	115836132	+	ENSMUST00000203620.1,ENSMUSG00000107429.2	Gm44206	ENSMUSG00000107429.2	ENSMUST00000203620.1	antisense	chr6:115836131-115842422
chr6	115848533	115848745	+	ID_B1	SINE	B4	chr6	115848704	115848706	-	ENSMUST00000133830.7,ENSMUSG00000030322.12	Mbd4	ENSMUSG00000030322.12	ENSMUST00000133830.7	protein_coding	chr6:115841199-115848705
chr6	115877224	115877393	-	B3	SINE	B2	chr6	115877266	115877268	+	ENSMUST00000149083.7,ENSMUSG00000030323.13	Ift122	ENSMUSG00000030323.13	ENSMUST00000149083.7	protein_coding	chr6:115877267-115887355
chr6	115885842	115885990	+	(CACCT)n	Simple_repeat	Simple_repeat	chr6	115885907	115885909	+	ENSMUST00000138113.1,ENSMUSG00000030323.13	Ift122	ENSMUSG00000030323.13	ENSMUST00000138113.1	protein_coding	chr6:115885908-115887360
chr6	115934340	115934371	+	(TC)n	Simple_repeat	Simple_repeat	chr6	115934340	115934342	+	ENSMUST00000203877.1,ENSMUSG00000030324.8	Rho	ENSMUSG00000030324.8	ENSMUST00000203877.1	protein_coding	chr6:115934341-115936952
chr6	116057004	116057056	+	(TG)n	Simple_repeat	Simple_repeat	chr6	116057010	116057012	-	ENSMUST00000172510.3,ENSMUSG00000030126.17	Tmcc1	ENSMUSG00000030126.17	ENSMUST00000172510.3	protein_coding	chr6:116021347-116057011
chr6	116171213	116171924	-	RMER6A	LTR	ERVK	chr6	116171696	116171698	-	ENSMUST00000173031.1,ENSMUSG00000030126.17	Tmcc1	ENSMUSG00000030126.17	ENSMUST00000173031.1	protein_coding	chr6:116131665-116171697
chr6	116255678	116255824	-	B1_Mus1	SINE	Alu	chr6	116255805	116255807	+	ENSMUST00000204495.1,ENSMUSG00000024104.11	Washc2	ENSMUSG00000024104.11	ENSMUST00000204495.1	protein_coding	chr6:116255806-116256828
chr6	116264260	116264317	+	G-rich	Low_complexity	Low_complexity	chr6	116264262	116264264	+	ENSMUST00000036503.13,ENSMUSG00000042213.17	Zfand4	ENSMUSG00000042213.17	ENSMUST00000036503.13	protein_coding	chr6:116264263-116330299
chr6	116264260	116264317	+	G-rich	Low_complexity	Low_complexity	chr6	116264264	116264266	+	ENSMUST00000223495.1,ENSMUSG00000042213.17	Zfand4	ENSMUSG00000042213.17	ENSMUST00000223495.1	protein_coding	chr6:116264265-116330302
chr6	116386182	116386225	+	C-rich	Low_complexity	Low_complexity	chr6	116386223	116386225	+	ENSMUST00000135901.1,ENSMUSG00000025702.15	March8	ENSMUSG00000025702.15	ENSMUST00000135901.1	protein_coding	chr6:116386224-116406224
chr6	116424649	116425275	-	ORR1D2-int	LTR	ERVL-MaLR	chr6	116424962	116424964	-	ENSMUST00000167174.1,ENSMUSG00000025701.12	Alox5	ENSMUSG00000025701.12	ENSMUST00000167174.1	protein_coding	chr6:116415470-116424963
chr6	116630010	116630490	+	RMER5	LTR	ERV1	chr6	116630221	116630223	+	ENSMUST00000204559.1,ENSMUSG00000107428.1	Gm44154	ENSMUSG00000107428.1	ENSMUST00000204559.1	TEC	chr6:116630222-116632945
chr6	116640615	116641074	+	MER34A1	LTR	ERV1	chr6	116641001	116641003	-	ENSMUST00000203477.1,ENSMUSG00000042129.8	Rassf4	ENSMUSG00000042129.8	ENSMUST00000203477.1	protein_coding	chr6:116639488-116641002
chr6	116953501	116953525	+	(CAAA)n	Simple_repeat	Simple_repeat	chr6	116953518	116953520	+	ENSMUST00000203978.1,ENSMUSG00000108225.1	Gm43926	ENSMUSG00000108225.1	ENSMUST00000203978.1	processed_pseudogene	chr6:116953519-116953948
chr6	117559513	117559966	+	MT2A	LTR	ERVL	chr6	117559696	117559698	+	ENSMUST00000008011.7,ENSMUSG00000054488.14	Gm9946	ENSMUSG00000054488.14	ENSMUST00000008011.7	lincRNA	chr6:117559697-117568193
chr6	117559513	117559966	+	MT2A	LTR	ERVL	chr6	117559696	117559698	+	ENSMUST00000162741.7,ENSMUSG00000054488.14	Gm9946	ENSMUSG00000054488.14	ENSMUST00000162741.7	lincRNA	chr6:117559697-117572329
chr6	117716342	117716507	+	RLTR45-int	LTR	ERVK	chr6	117716341	117716343	+	ENSMUST00000194706.1,ENSMUSG00000104222.1	Gm7292	ENSMUSG00000104222.1	ENSMUST00000194706.1	lincRNA	chr6:117716342-117718868
chr6	117716342	117716507	+	RLTR45-int	LTR	ERVK	chr6	117716472	117716474	+	ENSMUST00000195277.1,ENSMUSG00000104222.1	Gm7292	ENSMUSG00000104222.1	ENSMUST00000195277.1	lincRNA	chr6:117716473-117717467
chr6	117861967	117862100	+	RSINE1	SINE	B4	chr6	117862099	117862101	+	ENSMUST00000136316.1,ENSMUSG00000042097.17	Zfp239	ENSMUSG00000042097.17	ENSMUST00000136316.1	protein_coding	chr6:117862100-117870778
chr6	117900277	117900390	+	PB1D10	SINE	Alu	chr6	117900323	117900325	+	ENSMUST00000177743.7,ENSMUSG00000042079.13	Hnrnpf	ENSMUSG00000042079.13	ENSMUST00000177743.7	protein_coding	chr6:117900324-117923849
chr6	117900277	117900390	+	PB1D10	SINE	Alu	chr6	117900339	117900341	+	ENSMUST00000167182.7,ENSMUSG00000042079.13	Hnrnpf	ENSMUSG00000042079.13	ENSMUST00000167182.7	protein_coding	chr6:117900340-117925621
chr6	117935464	117935612	+	B1_Mus1	SINE	Alu	chr6	117935592	117935594	-	ENSMUST00000175364.1,ENSMUSG00000093105.1	Gm25535	ENSMUSG00000093105.1	ENSMUST00000175364.1	miRNA	chr6:117935469-117935593
chr6	117937629	117937744	+	RSINE1	SINE	B4	chr6	117937691	117937693	-	ENSMUST00000203082.2,ENSMUSG00000004988.9	Fxyd4	ENSMUSG00000004988.9	ENSMUST00000203082.2	protein_coding	chr6:117933559-117937692
chr6	118011428	118011541	+	GC_rich	Low_complexity	Low_complexity	chr6	118011437	118011439	+	ENSMUST00000164960.3,ENSMUSG00000030134.11	Rasgef1a	ENSMUSG00000030134.11	ENSMUST00000164960.3	protein_coding	chr6:118011438-118091546
chr6	118112041	118112267	+	L1MCa	LINE	L1	chr6	118112044	118112046	-	ENSMUST00000104599.1,ENSMUSG00000077787.1	Gm23908	ENSMUSG00000077787.1	ENSMUST00000104599.1	snoRNA	chr6:118111914-118112045
chr6	118248292	118248601	+	ORR1D1	LTR	ERVL-MaLR	chr6	118248451	118248453	-	ENSMUST00000204240.1,ENSMUSG00000107637.1	1700069P05Rik	ENSMUSG00000107637.1	ENSMUST00000204240.1	lincRNA	chr6:118246695-118248452
chr6	118428985	118429281	-	MMSAT4	Satellite	Satellite	chr6	118429169	118429171	+	ENSMUST00000175338.1,ENSMUSG00000093079.1	Gm25953	ENSMUSG00000093079.1	ENSMUST00000175338.1	miRNA	chr6:118429170-118429252
chr6	118468180	118468521	+	ORR1D2	LTR	ERVL-MaLR	chr6	118468418	118468420	-	ENSMUST00000204066.1,ENSMUSG00000072623.6	Zfp9	ENSMUSG00000072623.6	ENSMUST00000204066.1	protein_coding	chr6:118466779-118468419
chr6	118707127	118707179	+	Eulor6B	DNA?	DNA?	chr6	118707146	118707148	-	ENSMUST00000189930.1,ENSMUSG00000051331.15	Cacna1c	ENSMUSG00000051331.15	ENSMUST00000189930.1	protein_coding	chr6:118702217-118707147
chr6	118834898	118835000	+	U6	snRNA	snRNA	chr6	118834899	118834901	+	ENSMUST00000158490.1,ENSMUSG00000089115.1	Gm25905	ENSMUSG00000089115.1	ENSMUST00000158490.1	snRNA	chr6:118834900-118835000
chr6	119248511	119249489	-	L1_Mur3	LINE	L1	chr6	119248783	119248785	+	ENSMUST00000188239.6,ENSMUSG00000041460.14	Cacna2d4	ENSMUSG00000041460.14	ENSMUST00000188239.6	protein_coding	chr6:119248784-119301418
chr6	119249815	119250301	-	L1_Mur3	LINE	L1	chr6	119250014	119250016	+	ENSMUST00000186176.6,ENSMUSG00000041460.14	Cacna2d4	ENSMUSG00000041460.14	ENSMUST00000186176.6	protein_coding	chr6:119250015-119271933
chr6	119332402	119332567	+	(TG)n	Simple_repeat	Simple_repeat	chr6	119332561	119332563	+	ENSMUST00000185965.1,ENSMUSG00000041460.14	Cacna2d4	ENSMUSG00000041460.14	ENSMUST00000185965.1	protein_coding	chr6:119332562-119347238
chr6	119544336	119544370	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr6	119544346	119544348	-	ENSMUST00000178696.7,ENSMUSG00000030170.14	Wnt5b	ENSMUSG00000030170.14	ENSMUST00000178696.7	protein_coding	chr6:119432531-119544347
chr6	119622088	119622127	+	(A)n	Simple_repeat	Simple_repeat	chr6	119622104	119622106	-	ENSMUST00000204666.1,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000204666.1	protein_coding	chr6:119617267-119622105
chr6	119826430	119826474	-	B3A	SINE	B2	chr6	119826459	119826461	-	ENSMUST00000183741.1,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000183741.1	protein_coding	chr6:119823985-119826460
chr6	119848044	119848077	+	(CTG)n	Simple_repeat	Simple_repeat	chr6	119848058	119848060	-	ENSMUST00000184864.7,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000184864.7	protein_coding	chr6:119573728-119848059
chr6	119848090	119848132	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	119848098	119848100	-	ENSMUST00000185139.7,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000185139.7	protein_coding	chr6:119572630-119848099
chr6	119848090	119848132	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	119848114	119848116	-	ENSMUST00000183880.7,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000183880.7	protein_coding	chr6:119574577-119848115
chr6	119848090	119848132	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	119848101	119848103	-	ENSMUST00000079582.4,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000079582.4	protein_coding	chr6:119772706-119848102
chr6	119848157	119848286	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr6	119848166	119848168	-	ENSMUST00000183911.7,ENSMUSG00000030172.15	Erc1	ENSMUSG00000030172.15	ENSMUST00000183911.7	protein_coding	chr6:119575315-119848167
chr6	119918064	119918125	+	CT-rich	Low_complexity	Low_complexity	chr6	119918081	119918083	+	ENSMUST00000204319.1,ENSMUSG00000030166.14	Rad52	ENSMUSG00000030166.14	ENSMUST00000204319.1	protein_coding	chr6:119918082-119921634
chr6	119939910	119940103	-	B3A	SINE	B2	chr6	119940100	119940102	-	ENSMUST00000160820.1,ENSMUSG00000045962.16	Wnk1	ENSMUSG00000045962.16	ENSMUST00000160820.1	protein_coding	chr6:119937735-119940101
chr6	120034284	120034430	-	B1_Mus2	SINE	Alu	chr6	120034310	120034312	-	ENSMUST00000102262.1,ENSMUSG00000076217.1	Mir706	ENSMUSG00000076217.1	ENSMUST00000102262.1	miRNA	chr6:120034228-120034311
chr6	120143643	120143750	-	U6	snRNA	snRNA	chr6	120143749	120143751	-	ENSMUST00000180263.1,ENSMUSG00000095086.1	Gm25327	ENSMUSG00000095086.1	ENSMUST00000180263.1	snRNA	chr6:120143644-120143750
chr6	120381043	120381139	-	U6	snRNA	snRNA	chr6	120381138	120381140	-	ENSMUST00000122505.1,ENSMUSG00000084454.1	Gm24592	ENSMUSG00000084454.1	ENSMUST00000122505.1	snRNA	chr6:120381034-120381139
chr6	120429781	120429970	-	B2_Mm1t	SINE	B2	chr6	120429822	120429824	+	ENSMUST00000132599.1,ENSMUSG00000030180.15	Kdm5a	ENSMUSG00000030180.15	ENSMUST00000132599.1	protein_coding	chr6:120429823-120432043
chr6	120524896	120524998	+	U6	snRNA	snRNA	chr6	120524896	120524898	+	ENSMUST00000158138.1,ENSMUSG00000088763.1	Gm24391	ENSMUSG00000088763.1	ENSMUST00000158138.1	snRNA	chr6:120524897-120524998
chr6	120666356	120666410	+	GC_rich	Low_complexity	Low_complexity	chr6	120666368	120666370	+	ENSMUST00000148346.1,ENSMUSG00000071226.11	Cecr2	ENSMUSG00000071226.11	ENSMUST00000148346.1	protein_coding	chr6:120666369-120724920
chr6	120735747	120735890	+	B1_Mus2	SINE	Alu	chr6	120735755	120735757	+	ENSMUST00000204732.1,ENSMUSG00000071226.11	Cecr2	ENSMUSG00000071226.11	ENSMUST00000204732.1	protein_coding	chr6:120735756-120739751
chr6	120797566	120797693	-	B1_Mur3	SINE	Alu	chr6	120797669	120797671	-	ENSMUST00000176615.1,ENSMUSG00000093409.1	Gm25193	ENSMUSG00000093409.1	ENSMUST00000176615.1	miRNA	chr6:120797574-120797670
chr6	120802372	120802464	+	B1_Mur1	SINE	Alu	chr6	120802421	120802423	-	ENSMUST00000203527.1,ENSMUSG00000019210.10	Atp6v1e1	ENSMUSG00000019210.10	ENSMUST00000203527.1	protein_coding	chr6:120794305-120802422
chr6	120951708	120951975	-	URR1A	DNA	hAT-Charlie	chr6	120951900	120951902	+	ENSMUST00000205062.1,ENSMUSG00000108232.1	Gm43916	ENSMUSG00000108232.1	ENSMUST00000205062.1	antisense	chr6:120951901-120952867
chr6	121104627	121104654	+	MT2B	LTR	ERVL	chr6	121104640	121104642	-	ENSMUST00000207993.1,ENSMUSG00000051586.16	Mical3	ENSMUSG00000051586.16	ENSMUST00000207993.1	protein_coding	chr6:121042092-121104641
chr6	121325656	121325701	+	(CA)n	Simple_repeat	Simple_repeat	chr6	121325675	121325677	-	ENSMUST00000104848.1,ENSMUSG00000078042.1	Gm24855	ENSMUSG00000078042.1	ENSMUST00000104848.1	miRNA	chr6:121325580-121325676
chr6	121358883	121359000	+	CT-rich	Low_complexity	Low_complexity	chr6	121358964	121358966	+	ENSMUST00000170339.1,ENSMUSG00000030109.15	Slc6a12	ENSMUSG00000030109.15	ENSMUST00000170339.1	protein_coding	chr6:121358965-121363856
chr6	121547841	121550149	-	Lx5c	LINE	L1	chr6	121547859	121547861	-	ENSMUST00000203893.1,ENSMUSG00000108223.1	Gm43933	ENSMUSG00000108223.1	ENSMUST00000203893.1	processed_pseudogene	chr6:121547594-121547860
chr6	121658555	121658685	+	MER63D	DNA	hAT-Blackjack	chr6	121658612	121658614	+	ENSMUST00000203413.1,ENSMUSG00000030111.9	A2m	ENSMUSG00000030111.9	ENSMUST00000203413.1	protein_coding	chr6:121658613-121661191
chr6	122199926	122200445	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	122200136	122200138	+	ENSMUST00000184836.1,ENSMUSG00000098864.1	Gm27703	ENSMUSG00000098864.1	ENSMUST00000184836.1	miRNA	chr6:122200137-122200246
chr6	122305654	122305798	-	B1_Mm	SINE	Alu	chr6	122305797	122305799	-	ENSMUST00000175282.2,ENSMUSG00000093023.2	Gm27826	ENSMUSG00000093023.2	ENSMUST00000175282.2	misc_RNA	chr6:122305544-122305798
chr6	122339646	122339697	+	GC_rich	Low_complexity	Low_complexity	chr6	122339657	122339659	-	ENSMUST00000161739.7,ENSMUSG00000040669.14	Phc1	ENSMUSG00000040669.14	ENSMUST00000161739.7	protein_coding	chr6:122317738-122339658
chr6	122339646	122339697	+	GC_rich	Low_complexity	Low_complexity	chr6	122339655	122339657	-	ENSMUST00000159252.7,ENSMUSG00000040669.14	Phc1	ENSMUSG00000040669.14	ENSMUST00000159252.7	protein_coding	chr6:122317750-122339656
chr6	122466478	122466607	+	RMER19B	LTR	ERVK	chr6	122466586	122466588	-	ENSMUST00000146274.7,ENSMUSG00000040649.15	Rimklb	ENSMUSG00000040649.15	ENSMUST00000146274.7	protein_coding	chr6:122447296-122466587
chr6	122466478	122466607	+	RMER19B	LTR	ERVK	chr6	122466534	122466536	-	ENSMUST00000204731.1,ENSMUSG00000040649.15	Rimklb	ENSMUSG00000040649.15	ENSMUST00000204731.1	protein_coding	chr6:122454260-122466535
chr6	122466585	122466774	+	RMER19C	LTR	ERVK	chr6	122466586	122466588	-	ENSMUST00000146274.7,ENSMUSG00000040649.15	Rimklb	ENSMUSG00000040649.15	ENSMUST00000146274.7	protein_coding	chr6:122447296-122466587
chr6	122486424	122486460	+	(CA)n	Simple_repeat	Simple_repeat	chr6	122486438	122486440	-	ENSMUST00000205114.1,ENSMUSG00000040649.15	Rimklb	ENSMUSG00000040649.15	ENSMUST00000205114.1	protein_coding	chr6:122464170-122486439
chr6	122486502	122486604	+	GC_rich	Low_complexity	Low_complexity	chr6	122486504	122486506	-	ENSMUST00000068242.8,ENSMUSG00000040649.15	Rimklb	ENSMUSG00000040649.15	ENSMUST00000068242.8	protein_coding	chr6:122453101-122486505
chr6	122513469	122513604	+	RLTR51A_Mm	LTR	ERVK?	chr6	122513582	122513584	+	ENSMUST00000032210.13,ENSMUSG00000030116.14	Mfap5	ENSMUSG00000030116.14	ENSMUST00000032210.13	protein_coding	chr6:122513583-122528766
chr6	122513469	122513604	+	RLTR51A_Mm	LTR	ERVK?	chr6	122513582	122513584	+	ENSMUST00000148517.7,ENSMUSG00000030116.14	Mfap5	ENSMUSG00000030116.14	ENSMUST00000148517.7	protein_coding	chr6:122513583-122529290
chr6	122522395	122522552	-	B1_Mur3	SINE	Alu	chr6	122522498	122522500	+	ENSMUST00000126357.1,ENSMUSG00000030116.14	Mfap5	ENSMUSG00000030116.14	ENSMUST00000126357.1	protein_coding	chr6:122522499-122528635
chr6	122560480	122560550	+	(CA)n	Simple_repeat	Simple_repeat	chr6	122560484	122560486	+	ENSMUST00000160685.1,ENSMUSG00000040627.14	Aicda	ENSMUSG00000040627.14	ENSMUST00000160685.1	protein_coding	chr6:122560485-122563076
chr6	122600146	122600734	-	MRLTR33	LTR	ERVK	chr6	122600357	122600359	-	ENSMUST00000203204.2,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000203204.2	protein_coding	chr6:122581456-122600358
chr6	122600146	122600734	-	MRLTR33	LTR	ERVK	chr6	122600437	122600439	-	ENSMUST00000204035.1,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000204035.1	protein_coding	chr6:122596639-122600438
chr6	122601857	122602858	-	RLTR19-int	LTR	ERVK	chr6	122602443	122602445	-	ENSMUST00000112586.7,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000112586.7	protein_coding	chr6:122577792-122602444
chr6	122601857	122602858	-	RLTR19-int	LTR	ERVK	chr6	122602370	122602372	-	ENSMUST00000112585.7,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000112585.7	protein_coding	chr6:122577801-122602371
chr6	122601857	122602858	-	RLTR19-int	LTR	ERVK	chr6	122602386	122602388	-	ENSMUST00000203309.2,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000203309.2	protein_coding	chr6:122581430-122602387
chr6	122601857	122602858	-	RLTR19-int	LTR	ERVK	chr6	122602328	122602330	-	ENSMUST00000203197.2,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000203197.2	protein_coding	chr6:122581638-122602329
chr6	122601857	122602858	-	RLTR19-int	LTR	ERVK	chr6	122602369	122602371	-	ENSMUST00000147760.7,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000147760.7	protein_coding	chr6:122587322-122602370
chr6	122601857	122602858	-	RLTR19-int	LTR	ERVK	chr6	122602363	122602365	-	ENSMUST00000143356.1,ENSMUSG00000040613.14	Apobec1	ENSMUSG00000040613.14	ENSMUST00000143356.1	protein_coding	chr6:122588053-122602364
chr6	122623546	122623664	+	HY1	scRNA	scRNA	chr6	122623546	122623548	+	ENSMUST00000083787.1,ENSMUSG00000065721.1	Gm26168	ENSMUSG00000065721.1	ENSMUST00000083787.1	misc_RNA	chr6:122623547-122623658
chr6	122733144	122733338	-	B2_Mm2	SINE	B2	chr6	122733175	122733177	-	ENSMUST00000169979.1,ENSMUSG00000003153.10	Slc2a3	ENSMUSG00000003153.10	ENSMUST00000169979.1	protein_coding	chr6:122731559-122733176
chr6	122793325	122793348	+	(C)n	Simple_repeat	Simple_repeat	chr6	122793324	122793326	-	ENSMUST00000200876.2,ENSMUSG00000107066.2	Gm4482	ENSMUSG00000107066.2	ENSMUST00000200876.2	processed_pseudogene	chr6:122792584-122793325
chr6	122819835	122819919	+	G-rich	Low_complexity	Low_complexity	chr6	122819913	122819915	+	ENSMUST00000003238.13,ENSMUSG00000003154.15	Foxj2	ENSMUSG00000003154.15	ENSMUST00000003238.13	protein_coding	chr6:122819914-122845366
chr6	122902599	122902871	+	MTD	LTR	ERVL-MaLR	chr6	122902815	122902817	-	ENSMUST00000185734.1,ENSMUSG00000049249.2	Gm5316	ENSMUSG00000049249.2	ENSMUST00000185734.1	transcribed_processed_pseudogene	chr6:122899721-122902816
chr6	123104721	123109471	-	Lx2B	LINE	L1	chr6	123106427	123106429	+	ENSMUST00000159891.6,ENSMUSG00000030148.15	Clec4a2	ENSMUSG00000030148.15	ENSMUST00000159891.6	protein_coding	chr6:123106428-123123669
chr6	123195673	123195713	-	U2	snRNA	snRNA	chr6	123195712	123195714	-	ENSMUST00000158558.1,ENSMUSG00000089183.1	Gm22946	ENSMUSG00000089183.1	ENSMUST00000158558.1	snRNA	chr6:123195632-123195713
chr6	123424672	123424770	+	(TTC)n	Simple_repeat	Simple_repeat	chr6	123424686	123424688	-	ENSMUST00000158292.1,ENSMUSG00000093944.1	Gm22833	ENSMUSG00000093944.1	ENSMUST00000158292.1	snoRNA	chr6:123424556-123424687
chr6	123540017	123540115	+	(TTC)n	Simple_repeat	Simple_repeat	chr6	123540031	123540033	-	ENSMUST00000157467.1,ENSMUSG00000095175.1	Gm22722	ENSMUSG00000095175.1	ENSMUST00000157467.1	snoRNA	chr6:123539901-123540032
chr6	123981852	123983569	+	L1_Mur2	LINE	L1	chr6	123982172	123982174	-	ENSMUST00000176108.3,ENSMUSG00000093385.3	A330044P14Rik	ENSMUSG00000093385.3	ENSMUST00000176108.3	transcribed_unprocessed_pseudogene	chr6:123934426-123982173
chr6	124383851	124384558	+	L1_Mur1	LINE	L1	chr6	124384159	124384161	-	ENSMUST00000203845.1,ENSMUSG00000108026.1	Gm44007	ENSMUSG00000108026.1	ENSMUST00000203845.1	TEC	chr6:124381972-124384160
chr6	124450141	124450183	+	ID4	SINE	ID	chr6	124450171	124450173	-	ENSMUST00000147947.1,ENSMUSG00000008153.11	Clstn3	ENSMUSG00000008153.11	ENSMUST00000147947.1	protein_coding	chr6:124438904-124450172
chr6	124741224	124741286	-	U7	snRNA	snRNA	chr6	124741285	124741287	-	ENSMUST00000158458.1,ENSMUSG00000089083.1	Rnu7	ENSMUSG00000089083.1	ENSMUST00000158458.1	snRNA	chr6:124741225-124741286
chr6	124756497	124756639	+	C-rich	Low_complexity	Low_complexity	chr6	124756523	124756525	-	ENSMUST00000088357.11,ENSMUSG00000004263.15	Atn1	ENSMUSG00000004263.15	ENSMUST00000088357.11	protein_coding	chr6:124742544-124756524
chr6	124769457	124769510	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	124769483	124769485	-	ENSMUST00000151214.7,ENSMUSG00000004267.16	Eno2	ENSMUSG00000004267.16	ENSMUST00000151214.7	protein_coding	chr6:124766141-124769484
chr6	124769457	124769510	+	(CGG)n	Simple_repeat	Simple_repeat	chr6	124769485	124769487	-	ENSMUST00000156033.1,ENSMUSG00000004267.16	Eno2	ENSMUSG00000004267.16	ENSMUST00000156033.1	protein_coding	chr6:124767708-124769486
chr6	124836235	124836371	+	B1_Mus1	SINE	Alu	chr6	124836296	124836298	-	ENSMUST00000140233.1,ENSMUSG00000023439.11	Gnb3	ENSMUSG00000023439.11	ENSMUST00000140233.1	protein_coding	chr6:124834679-124836297
chr6	124842595	124842689	-	PB1D7	SINE	Alu	chr6	124842610	124842612	-	ENSMUST00000126987.1,ENSMUSG00000023191.9	P3h3	ENSMUSG00000023191.9	ENSMUST00000126987.1	protein_coding	chr6:124841494-124842611
chr6	124857731	124857820	+	G-rich	Low_complexity	Low_complexity	chr6	124857751	124857753	-	ENSMUST00000023958.9,ENSMUSG00000023191.9	P3h3	ENSMUSG00000023191.9	ENSMUST00000023958.9	protein_coding	chr6:124841089-124857752
chr6	124863966	124864027	+	G-rich	Low_complexity	Low_complexity	chr6	124863982	124863984	-	ENSMUST00000204667.1,ENSMUSG00000038390.11	Gpr162	ENSMUSG00000038390.11	ENSMUST00000204667.1	protein_coding	chr6:124858448-124863983
chr6	124914634	124914715	+	CT-rich	Low_complexity	Low_complexity	chr6	124914673	124914675	-	ENSMUST00000203422.1,ENSMUSG00000030122.12	Ptms	ENSMUSG00000030122.12	ENSMUST00000203422.1	protein_coding	chr6:124913688-124914674
chr6	124964281	124964387	+	U6	snRNA	snRNA	chr6	124964284	124964286	+	ENSMUST00000083831.1,ENSMUSG00000065765.1	Gm23851	ENSMUSG00000065765.1	ENSMUST00000083831.1	snRNA	chr6:124964285-124964387
chr6	125045414	125045606	-	B2_Mm1t	SINE	B2	chr6	125045521	125045523	+	ENSMUST00000133695.1,ENSMUSG00000030330.15	Ing4	ENSMUSG00000030330.15	ENSMUST00000133695.1	protein_coding	chr6:125045522-125049265
chr6	125083299	125083456	-	B1_Mur2	SINE	Alu	chr6	125083436	125083438	+	ENSMUST00000203956.1,ENSMUSG00000107761.1	2010008C14Rik	ENSMUSG00000107761.1	ENSMUST00000203956.1	TEC	chr6:125083437-125084029
chr6	125169203	125169362	+	L1MC1	LINE	L1	chr6	125169283	125169285	-	ENSMUST00000188119.1,ENSMUSG00000038252.13	Ncapd2	ENSMUSG00000038252.13	ENSMUST00000188119.1	protein_coding	chr6:125168007-125169284
chr6	125195593	125196085	+	Lx5b	LINE	L1	chr6	125195791	125195793	+	ENSMUST00000175416.1,ENSMUSG00000093157.1	Mir3098	ENSMUSG00000093157.1	ENSMUST00000175416.1	miRNA	chr6:125195792-125195878
chr6	125234811	125234934	+	C-rich	Low_complexity	Low_complexity	chr6	125234815	125234817	-	ENSMUST00000135205.1,ENSMUSG00000030336.14	Cd27	ENSMUSG00000030336.14	ENSMUST00000135205.1	protein_coding	chr6:125233558-125234816
chr6	125234811	125234934	+	C-rich	Low_complexity	Low_complexity	chr6	125234811	125234813	-	ENSMUST00000184956.1,ENSMUSG00000098856.1	Mir8113	ENSMUSG00000098856.1	ENSMUST00000184956.1	miRNA	chr6:125234684-125234812
chr6	125349655	125349779	+	C-rich	Low_complexity	Low_complexity	chr6	125349722	125349724	+	ENSMUST00000032491.14,ENSMUSG00000030341.17	Tnfrsf1a	ENSMUSG00000030341.17	ENSMUST00000032491.14	protein_coding	chr6:125349723-125362484
chr6	125478245	125478338	-	PB1D10	SINE	Alu	chr6	125478301	125478303	-	ENSMUST00000130132.1,ENSMUSG00000030342.8	Cd9	ENSMUSG00000030342.8	ENSMUST00000130132.1	protein_coding	chr6:125460589-125478302
chr6	125546693	125546795	+	MTEa	LTR	ERVL-MaLR	chr6	125546773	125546775	+	ENSMUST00000100941.8,ENSMUSG00000001930.17	Vwf	ENSMUSG00000001930.17	ENSMUST00000100941.8	protein_coding	chr6:125546774-125592174
chr6	125884414	125884523	+	U6	snRNA	snRNA	chr6	125884414	125884416	+	ENSMUST00000158334.1,ENSMUSG00000088959.1	Gm24947	ENSMUSG00000088959.1	ENSMUST00000158334.1	snRNA	chr6:125884415-125884524
chr6	126907456	126907568	+	CT-rich	Low_complexity	Low_complexity	chr6	126907510	126907512	-	ENSMUST00000032495.9,ENSMUSG00000030345.16	Dyrk4	ENSMUSG00000030345.16	ENSMUST00000032495.9	protein_coding	chr6:126876199-126907511
chr6	127099997	127100490	+	MT2_Mm	LTR	ERVL	chr6	127100296	127100298	+	ENSMUST00000180653.2,ENSMUSG00000097525.2	Platr31	ENSMUSG00000097525.2	ENSMUST00000180653.2	antisense	chr6:127100297-127110467
chr6	127325839	127325971	+	L3	LINE	CR1	chr6	127325856	127325858	-	ENSMUST00000201914.1,ENSMUSG00000106843.1	Gm42458	ENSMUSG00000106843.1	ENSMUST00000201914.1	TEC	chr6:127325489-127325857
chr6	127449247	127449289	+	L2a	LINE	L2	chr6	127449262	127449264	+	ENSMUST00000112195.7,ENSMUSG00000037997.12	Parp11	ENSMUSG00000037997.12	ENSMUST00000112195.7	protein_coding	chr6:127449263-127478133
chr6	127485486	127487629	-	L1_Mur1	LINE	L1	chr6	127485792	127485794	+	ENSMUST00000202455.1,ENSMUSG00000106962.1	Gm43633	ENSMUSG00000106962.1	ENSMUST00000202455.1	TEC	chr6:127485793-127488122
chr6	127810471	127811312	+	RMER17A2	LTR	ERVK	chr6	127810717	127810719	-	ENSMUST00000201951.1,ENSMUSG00000106862.1	Gm42811	ENSMUSG00000106862.1	ENSMUST00000201951.1	TEC	chr6:127807951-127810718
chr6	128094944	128095074	+	ID_B1	SINE	B4	chr6	128095025	128095027	-	ENSMUST00000102372.1,ENSMUSG00000076327.1	Gm26338	ENSMUSG00000076327.1	ENSMUST00000102372.1	miRNA	chr6:128094917-128095026
chr6	128143577	128143635	+	GC_rich	Low_complexity	Low_complexity	chr6	128143593	128143595	-	ENSMUST00000127075.1,ENSMUSG00000030352.14	Tspan9	ENSMUSG00000030352.14	ENSMUST00000127075.1	protein_coding	chr6:128081837-128143594
chr6	128166865	128166922	+	(A)n	Simple_repeat	Simple_repeat	chr6	128166921	128166923	-	ENSMUST00000204623.1,ENSMUSG00000108220.1	Gm44056	ENSMUSG00000108220.1	ENSMUST00000204623.1	TEC	chr6:128165496-128166922
chr6	128208005	128208206	-	B3	SINE	B2	chr6	128208118	128208120	+	ENSMUST00000203910.1,ENSMUSG00000107873.1	Gm19065	ENSMUSG00000107873.1	ENSMUST00000203910.1	transcribed_processed_pseudogene	chr6:128208119-128209283
chr6	128325535	128325591	+	A-rich	Low_complexity	Low_complexity	chr6	128325546	128325548	-	ENSMUST00000128708.1,ENSMUSG00000001521.12	Tulp3	ENSMUSG00000001521.12	ENSMUST00000128708.1	protein_coding	chr6:128323008-128325547
chr6	128344951	128344992	+	(A)n	Simple_repeat	Simple_repeat	chr6	128344974	128344976	-	ENSMUST00000203625.1,ENSMUSG00000001521.12	Tulp3	ENSMUSG00000001521.12	ENSMUST00000203625.1	protein_coding	chr6:128341353-128344975
chr6	128350137	128350157	+	(A)n	Simple_repeat	Simple_repeat	chr6	128350153	128350155	-	ENSMUST00000205083.1,ENSMUSG00000108267.1	Gm44190	ENSMUSG00000108267.1	ENSMUST00000205083.1	sense_intronic	chr6:128348754-128350154
chr6	128362773	128362863	+	GC_rich	Low_complexity	Low_complexity	chr6	128362811	128362813	-	ENSMUST00000112152.7,ENSMUSG00000048668.16	Rhno1	ENSMUSG00000048668.16	ENSMUST00000112152.7	protein_coding	chr6:128357000-128362812
chr6	128376935	128377219	-	ORR1G	LTR	ERVL-MaLR	chr6	128376980	128376982	+	ENSMUST00000203779.1,ENSMUSG00000108176.1	Gm43965	ENSMUSG00000108176.1	ENSMUST00000203779.1	TEC	chr6:128376981-128377769
chr6	128399731	128399781	+	(CA)n	Simple_repeat	Simple_repeat	chr6	128399739	128399741	-	ENSMUST00000146349.1,ENSMUSG00000085739.1	Gm15862	ENSMUSG00000085739.1	ENSMUST00000146349.1	antisense	chr6:128381584-128399740
chr6	128399731	128399781	+	(CA)n	Simple_repeat	Simple_repeat	chr6	128399765	128399767	+	ENSMUST00000001561.11,ENSMUSG00000001520.12	Nrip2	ENSMUSG00000001520.12	ENSMUST00000001561.11	protein_coding	chr6:128399766-128408932
chr6	128473390	128473664	+	MT2B1	LTR	ERVL	chr6	128473589	128473591	+	ENSMUST00000204037.1,ENSMUSG00000059659.7	Gm10069	ENSMUSG00000059659.7	ENSMUST00000204037.1	antisense	chr6:128473590-128489013
chr6	128559514	128559634	-	B1_Mus1	SINE	Alu	chr6	128559546	128559548	-	ENSMUST00000203889.1,ENSMUSG00000047228.9	A2ml1	ENSMUSG00000047228.9	ENSMUST00000203889.1	protein_coding	chr6:128558318-128559547
chr6	128576700	128576896	+	B3	SINE	B2	chr6	128576745	128576747	-	ENSMUST00000203129.1,ENSMUSG00000047228.9	A2ml1	ENSMUSG00000047228.9	ENSMUST00000203129.1	protein_coding	chr6:128574184-128576746
chr6	128623021	128623550	-	Lx5c	LINE	L1	chr6	128623532	128623534	-	ENSMUST00000203150.1,ENSMUSG00000030361.16	Klrb1a	ENSMUSG00000030361.16	ENSMUST00000203150.1	protein_coding	chr6:128619127-128623533
chr6	128693500	128693834	+	IAPLTR2b	LTR	ERVK	chr6	128693782	128693784	-	ENSMUST00000204910.1,ENSMUSG00000107495.1	Gm44215	ENSMUSG00000107495.1	ENSMUST00000204910.1	TEC	chr6:128691073-128693783
chr6	128788691	128789232	-	Lx5c	LINE	L1	chr6	128789214	128789216	-	ENSMUST00000174865.1,ENSMUSG00000030325.16	Klrb1c	ENSMUSG00000030325.16	ENSMUST00000174865.1	protein_coding	chr6:128784764-128789215
chr6	128846812	128847660	-	RMER1C	Other	Other	chr6	128846958	128846960	-	ENSMUST00000203350.1,ENSMUSG00000108095.1	Gm44067	ENSMUSG00000108095.1	ENSMUST00000203350.1	lincRNA	chr6:128843786-128846959
chr6	128864820	128866993	+	RLTR45-int	LTR	ERVK	chr6	128865193	128865195	-	ENSMUST00000204652.1,ENSMUSG00000107633.1	Gm44078	ENSMUSG00000107633.1	ENSMUST00000204652.1	TEC	chr6:128862549-128865194
chr6	128970935	128971304	+	IAPLTR2a	LTR	ERVK	chr6	128971159	128971161	+	ENSMUST00000203405.2,ENSMUSG00000000248.16	Clec2g	ENSMUSG00000000248.16	ENSMUST00000203405.2	protein_coding	chr6:128971160-128983382
chr6	128970935	128971304	+	IAPLTR2a	LTR	ERVK	chr6	128971159	128971161	+	ENSMUST00000142388.7,ENSMUSG00000000248.16	Clec2g	ENSMUSG00000000248.16	ENSMUST00000142388.7	protein_coding	chr6:128971160-128984707
chr6	128970935	128971304	+	IAPLTR2a	LTR	ERVK	chr6	128971260	128971262	+	ENSMUST00000204259.2,ENSMUSG00000000248.16	Clec2g	ENSMUSG00000000248.16	ENSMUST00000204259.2	protein_coding	chr6:128971261-128983246
chr6	128979368	128979547	-	B3	SINE	B2	chr6	128979408	128979410	+	ENSMUST00000075789.3,ENSMUSG00000000248.16	Clec2g	ENSMUSG00000000248.16	ENSMUST00000075789.3	protein_coding	chr6:128979409-128983192
chr6	129174115	129175074	+	MLTR25A	LTR	ERVK	chr6	129174819	129174821	+	ENSMUST00000158965.1,ENSMUSG00000089590.1	Gm26160	ENSMUSG00000089590.1	ENSMUST00000158965.1	snRNA	chr6:129174820-129174882
chr6	129188814	129189333	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	129189123	129189125	-	ENSMUST00000183692.1,ENSMUSG00000098268.1	Gm27514	ENSMUSG00000098268.1	ENSMUST00000183692.1	miRNA	chr6:129189015-129189124
chr6	129237950	129238099	+	B3	SINE	B2	chr6	129237990	129237992	-	ENSMUST00000205051.2,ENSMUSG00000097354.7	2310001H17Rik	ENSMUSG00000097354.7	ENSMUST00000205051.2	lincRNA	chr6:129216351-129237991
chr6	129238689	129238750	+	AT_rich	Low_complexity	Low_complexity	chr6	129238724	129238726	-	ENSMUST00000203780.2,ENSMUSG00000097354.7	2310001H17Rik	ENSMUSG00000097354.7	ENSMUST00000203780.2	lincRNA	chr6:129232623-129238725
chr6	129342474	129342871	+	MTA_Mm	LTR	ERVL-MaLR	chr6	129342690	129342692	+	ENSMUST00000151671.7,ENSMUSG00000053063.11	Clec12a	ENSMUSG00000053063.11	ENSMUST00000151671.7	protein_coding	chr6:129342691-129359415
chr6	129349732	129350001	-	RLTR9A3	LTR	ERVK	chr6	129349741	129349743	+	ENSMUST00000147106.2,ENSMUSG00000053063.11	Clec12a	ENSMUSG00000053063.11	ENSMUST00000147106.2	protein_coding	chr6:129349742-129353624
chr6	129349732	129350001	-	RLTR9A3	LTR	ERVK	chr6	129349963	129349965	+	ENSMUST00000065289.5,ENSMUSG00000053063.11	Clec12a	ENSMUSG00000053063.11	ENSMUST00000065289.5	protein_coding	chr6:129349964-129365303
chr6	129356763	129358843	-	Lx5c	LINE	L1	chr6	129356801	129356803	+	ENSMUST00000133756.1,ENSMUSG00000053063.11	Clec12a	ENSMUSG00000053063.11	ENSMUST00000133756.1	protein_coding	chr6:129356802-129364416
chr6	129515748	129515884	+	B1_Mur1	SINE	Alu	chr6	129515806	129515808	+	ENSMUST00000204692.1,ENSMUSG00000030160.7	Tmem52b	ENSMUSG00000030160.7	ENSMUST00000204692.1	protein_coding	chr6:129515807-129517484
chr6	129522502	129522827	-	RMER12C	LTR	ERVK	chr6	129522561	129522563	+	ENSMUST00000203022.1,ENSMUSG00000108290.1	Gm44120	ENSMUSG00000108290.1	ENSMUST00000203022.1	TEC	chr6:129522562-129525584
chr6	129577891	129577971	-	RLTR20C1_MM	LTR	ERVK	chr6	129577904	129577906	+	ENSMUST00000053708.8,ENSMUSG00000050241.8	Klre1	ENSMUSG00000050241.8	ENSMUST00000053708.8	protein_coding	chr6:129577905-129585827
chr6	129596367	129596491	-	PB1D11	SINE	Alu	chr6	129596489	129596491	+	ENSMUST00000159077.1,ENSMUSG00000030165.16	Klrd1	ENSMUSG00000030165.16	ENSMUST00000159077.1	protein_coding	chr6:129596490-129598452
chr6	129622645	129622754	-	PB1D9	SINE	Alu	chr6	129622683	129622685	-	ENSMUST00000137660.1,ENSMUSG00000030149.15	Klrk1	ENSMUSG00000030149.15	ENSMUST00000137660.1	protein_coding	chr6:129616568-129622684
chr6	129691332	129691835	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	129691534	129691536	+	ENSMUST00000102257.1,ENSMUSG00000076212.1	Mir680-1	ENSMUSG00000076212.1	ENSMUST00000102257.1	miRNA	chr6:129691535-129691643
chr6	129848529	129855566	+	ERVB2_1A-I_MM-int	LTR	ERVK	chr6	129848692	129848694	+	ENSMUST00000203079.1,ENSMUSG00000108235.1	Gm44248	ENSMUSG00000108235.1	ENSMUST00000203079.1	processed_pseudogene	chr6:129848693-129850241
chr6	129856791	129862854	+	L1Md_T	LINE	L1	chr6	129862648	129862650	+	ENSMUST00000171980.1,ENSMUSG00000092047.1	Gm17631	ENSMUSG00000092047.1	ENSMUST00000171980.1	protein_coding	chr6:129862649-129864393
chr6	129897616	129897940	-	Lx2A1	LINE	L1	chr6	129897931	129897933	+	ENSMUST00000177871.1,ENSMUSG00000096482.1	Gm23977	ENSMUSG00000096482.1	ENSMUST00000177871.1	snRNA	chr6:129897932-129898005
chr6	130080840	130081428	-	Lx2	LINE	L1	chr6	130081418	130081420	+	ENSMUST00000158758.1,ENSMUSG00000089383.1	Gm24676	ENSMUSG00000089383.1	ENSMUST00000158758.1	snRNA	chr6:130081419-130081493
chr6	130112802	130113304	-	Lx2A1	LINE	L1	chr6	130113290	130113292	+	ENSMUST00000179678.1,ENSMUSG00000094188.1	Gm22621	ENSMUSG00000094188.1	ENSMUST00000179678.1	snRNA	chr6:130113291-130113364
chr6	130146393	130146889	-	Lx2A1	LINE	L1	chr6	130146880	130146882	+	ENSMUST00000157895.2,ENSMUSG00000096331.1	Gm24712	ENSMUSG00000096331.1	ENSMUST00000157895.2	snRNA	chr6:130146881-130146954
chr6	130176117	130176761	-	Lx2	LINE	L1	chr6	130176752	130176754	+	ENSMUST00000178922.1,ENSMUSG00000094579.1	Gm23552	ENSMUSG00000094579.1	ENSMUST00000178922.1	snRNA	chr6:130176753-130176826
chr6	130320292	130320882	-	Lx2	LINE	L1	chr6	130320873	130320875	+	ENSMUST00000178506.1,ENSMUSG00000094408.1	Gm24072	ENSMUSG00000094408.1	ENSMUST00000178506.1	snRNA	chr6:130320874-130320947
chr6	130503448	130503588	-	MurSatRep1	Unknown	Unknown	chr6	130503580	130503582	-	ENSMUST00000182397.2,ENSMUSG00000098212.2	Gm38706	ENSMUSG00000098212.2	ENSMUST00000182397.2	unprocessed_pseudogene	chr6:130483189-130503581
chr6	130545174	130545314	-	MurSatRep1	Unknown	Unknown	chr6	130545298	130545300	-	ENSMUST00000204664.1,ENSMUSG00000107787.1	Gm44526	ENSMUSG00000107787.1	ENSMUST00000204664.1	processed_pseudogene	chr6:130545179-130545299
chr6	130591550	130591689	-	MurSatRep1	Unknown	Unknown	chr6	130591681	130591683	-	ENSMUST00000204418.1,ENSMUSG00000107519.1	Gm26996	ENSMUSG00000107519.1	ENSMUST00000204418.1	unprocessed_pseudogene	chr6:130579766-130591682
chr6	130697848	130697988	-	MurSatRep1	Unknown	Unknown	chr6	130697980	130697982	-	ENSMUST00000205067.1,ENSMUSG00000107898.1	Gm27013	ENSMUSG00000107898.1	ENSMUST00000205067.1	unprocessed_pseudogene	chr6:130677102-130697981
chr6	130746093	130746232	-	MurSatRep1	Unknown	Unknown	chr6	130746226	130746228	-	ENSMUST00000204519.1,ENSMUSG00000098015.3	Gm44527	ENSMUSG00000098015.3	ENSMUST00000204519.1	transcribed_unprocessed_pseudogene	chr6:130729572-130746227
chr6	130799853	130799992	-	MurSatRep1	Unknown	Unknown	chr6	130799986	130799988	-	ENSMUST00000183129.2,ENSMUSG00000098071.2	Gm44525	ENSMUSG00000098071.2	ENSMUST00000183129.2	unprocessed_pseudogene	chr6:130786622-130799987
chr6	130825760	130825837	+	Lx8	LINE	L1	chr6	130825831	130825833	+	ENSMUST00000204665.1,ENSMUSG00000107975.1	Gm44118	ENSMUSG00000107975.1	ENSMUST00000204665.1	processed_pseudogene	chr6:130825832-130826060
chr6	130887409	130887549	-	MurSatRep1	Unknown	Unknown	chr6	130887541	130887543	-	ENSMUST00000182643.3,ENSMUSG00000098137.3	Gm33962	ENSMUSG00000098137.3	ENSMUST00000182643.3	transcribed_unprocessed_pseudogene	chr6:130868228-130887542
chr6	130953359	130953498	-	MurSatRep1	Unknown	Unknown	chr6	130953461	130953463	-	ENSMUST00000203745.1,ENSMUSG00000107581.1	Gm44828	ENSMUSG00000107581.1	ENSMUST00000203745.1	processed_pseudogene	chr6:130953357-130953462
chr6	131002412	131002552	-	MurSatRep1	Unknown	Unknown	chr6	131002546	131002548	-	ENSMUST00000204450.2,ENSMUSG00000107582.2	Gm44133	ENSMUSG00000107582.2	ENSMUST00000204450.2	transcribed_unprocessed_pseudogene	chr6:130987148-131002547
chr6	131051375	131051515	-	MurSatRep1	Unknown	Unknown	chr6	131051506	131051508	-	ENSMUST00000204777.2,ENSMUSG00000108066.2	Gm44134	ENSMUSG00000108066.2	ENSMUST00000204777.2	transcribed_unprocessed_pseudogene	chr6:131038181-131051507
chr6	131104210	131104349	-	MurSatRep1	Unknown	Unknown	chr6	131104336	131104338	-	ENSMUST00000203317.1,ENSMUSG00000107464.1	Gm44150	ENSMUSG00000107464.1	ENSMUST00000203317.1	unprocessed_pseudogene	chr6:131084231-131104337
chr6	131285856	131285991	+	B1F2	SINE	Alu	chr6	131285872	131285874	-	ENSMUST00000174488.1,ENSMUSG00000030188.12	Magohb	ENSMUSG00000030188.12	ENSMUST00000174488.1	protein_coding	chr6:131284513-131285873
chr6	131289642	131289686	+	(TTCC)n	Simple_repeat	Simple_repeat	chr6	131289675	131289677	-	ENSMUST00000174781.3,ENSMUSG00000030188.12	Magohb	ENSMUSG00000030188.12	ENSMUST00000174781.3	protein_coding	chr6:131284665-131289676
chr6	131388458	131388508	+	G-rich	Low_complexity	Low_complexity	chr6	131388475	131388477	-	ENSMUST00000087865.3,ENSMUSG00000030189.15	Ybx3	ENSMUSG00000030189.15	ENSMUST00000087865.3	protein_coding	chr6:131364855-131388476
chr6	131532713	131533230	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	131532921	131532923	+	ENSMUST00000103827.1,ENSMUSG00000077015.1	Gm22190	ENSMUSG00000077015.1	ENSMUST00000103827.1	miRNA	chr6:131532922-131533031
chr6	132069785	132070171	+	RLTR9A3B	LTR	ERVK	chr6	132069784	132069786	-	ENSMUST00000203023.1,ENSMUSG00000108144.1	Gm43975	ENSMUSG00000108144.1	ENSMUST00000203023.1	processed_pseudogene	chr6:132069305-132069785
chr6	132523878	132527924	-	ETnERV-int	LTR	ERVK	chr6	132525032	132525034	+	ENSMUST00000203389.1,ENSMUSG00000107632.1	Gm44070	ENSMUSG00000107632.1	ENSMUST00000203389.1	TEC	chr6:132525033-132527252
chr6	132651489	132651573	+	L1MEc	LINE	L1	chr6	132651525	132651527	-	ENSMUST00000205081.1,ENSMUSG00000067541.7	A630073D07Rik	ENSMUSG00000067541.7	ENSMUST00000205081.1	protein_coding	chr6:132625115-132651526
chr6	132760678	132761151	+	RLTR30D_MM	LTR	ERV1	chr6	132760704	132760706	+	ENSMUST00000204939.1,ENSMUSG00000107888.1	Gm44138	ENSMUSG00000107888.1	ENSMUST00000204939.1	processed_pseudogene	chr6:132760705-132760975
chr6	133191590	133192095	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	133191791	133191793	+	ENSMUST00000179169.1,ENSMUSG00000095447.1	Gm23403	ENSMUSG00000095447.1	ENSMUST00000179169.1	miRNA	chr6:133191792-133191901
chr6	133196437	133196943	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr6	133196639	133196641	+	ENSMUST00000179732.1,ENSMUSG00000094750.1	Gm25019	ENSMUSG00000094750.1	ENSMUST00000179732.1	miRNA	chr6:133196640-133196749
chr6	133706870	133707197	+	IAPEY4_LTR	LTR	ERVK	chr6	133706869	133706871	+	ENSMUST00000203875.1,ENSMUSG00000107635.1	Gm44247	ENSMUSG00000107635.1	ENSMUST00000203875.1	TEC	chr6:133706870-133707146
chr6	133732376	133735917	+	MERVK26-int	LTR	ERVK	chr6	133732377	133732379	-	ENSMUST00000204187.1,ENSMUSG00000108241.1	Gm44252	ENSMUSG00000108241.1	ENSMUST00000204187.1	processed_pseudogene	chr6:133732049-133732378
chr6	134396232	134396488	+	Tigger16b	DNA	TcMar-Tigger	chr6	134396317	134396319	+	ENSMUST00000032321.10,ENSMUSG00000030200.13	Bcl2l14	ENSMUSG00000030200.13	ENSMUST00000032321.10	protein_coding	chr6:134396318-134438736
chr6	134396232	134396488	+	Tigger16b	DNA	TcMar-Tigger	chr6	134396344	134396346	+	ENSMUST00000139183.1,ENSMUSG00000030200.13	Bcl2l14	ENSMUSG00000030200.13	ENSMUST00000139183.1	protein_coding	chr6:134396345-134403357
chr6	134403383	134403583	+	Lx8	LINE	L1	chr6	134403414	134403416	-	ENSMUST00000203352.1,ENSMUSG00000107666.1	4933406J09Rik	ENSMUSG00000107666.1	ENSMUST00000203352.1	antisense	chr6:134308951-134403415
chr6	134607532	134607719	-	B3	SINE	B2	chr6	134607680	134607682	-	ENSMUST00000204630.1,ENSMUSG00000107728.1	Gm38910	ENSMUSG00000107728.1	ENSMUST00000204630.1	lincRNA	chr6:134605234-134607681
chr6	134624943	134625003	+	(G)n	Simple_repeat	Simple_repeat	chr6	134624981	134624983	+	ENSMUST00000203765.1,ENSMUSG00000108121.1	Gm43952	ENSMUSG00000108121.1	ENSMUST00000203765.1	TEC	chr6:134624982-134625732
chr6	134639099	134639929	+	MTC-int	LTR	ERVL-MaLR	chr6	134639509	134639511	+	ENSMUST00000166591.7,ENSMUSG00000042992.15	Borcs5	ENSMUSG00000042992.15	ENSMUST00000166591.7	protein_coding	chr6:134639510-134710355
chr6	134689853	134690845	-	RLTR10-int	LTR	ERVK	chr6	134689858	134689860	+	ENSMUST00000203231.1,ENSMUSG00000108166.1	Gm44017	ENSMUSG00000108166.1	ENSMUST00000203231.1	sense_intronic	chr6:134689859-134691302
chr6	134835814	134835844	+	AT_rich	Low_complexity	Low_complexity	chr6	134835843	134835845	+	ENSMUST00000203947.1,ENSMUSG00000108233.1	Gm44084	ENSMUSG00000108233.1	ENSMUST00000203947.1	processed_pseudogene	chr6:134835844-134836252
chr6	134929071	134929093	+	GC_rich	Low_complexity	Low_complexity	chr6	134929091	134929093	+	ENSMUST00000183867.6,ENSMUSG00000098318.7	Lockd	ENSMUSG00000098318.7	ENSMUST00000183867.6	lincRNA	chr6:134929092-134956798
chr6	136281226	136281412	+	U2	snRNA	snRNA	chr6	136281226	136281228	+	ENSMUST00000157253.1,ENSMUSG00000087878.1	Gm26105	ENSMUSG00000087878.1	ENSMUST00000157253.1	snRNA	chr6:136281227-136281416
chr6	136327258	136327726	+	MT2C_Mm	LTR	ERVL	chr6	136327538	136327540	+	ENSMUST00000204530.1,ENSMUSG00000094973.2	Gm8994	ENSMUSG00000094973.2	ENSMUST00000204530.1	protein_coding	chr6:136327539-136329983
chr6	136383719	136383748	+	(CTG)n	Simple_repeat	Simple_repeat	chr6	136383727	136383729	+	ENSMUST00000118247.2,ENSMUSG00000083916.2	Gm15476	ENSMUSG00000083916.2	ENSMUST00000118247.2	processed_pseudogene	chr6:136383728-136384918
chr6	136415209	136416162	-	MTC-int	LTR	ERVL-MaLR	chr6	136415568	136415570	-	ENSMUST00000204830.1,ENSMUSG00000045291.8	E330021D16Rik	ENSMUSG00000045291.8	ENSMUST00000204830.1	protein_coding	chr6:136400317-136415569
chr6	136415209	136416162	-	MTC-int	LTR	ERVL-MaLR	chr6	136415563	136415565	-	ENSMUST00000203392.1,ENSMUSG00000045291.8	E330021D16Rik	ENSMUSG00000045291.8	ENSMUST00000203392.1	protein_coding	chr6:136401495-136415564
chr6	136417811	136417880	+	U4	snRNA	snRNA	chr6	136417811	136417813	+	ENSMUST00000157784.1,ENSMUSG00000088409.1	Gm25882	ENSMUSG00000088409.1	ENSMUST00000157784.1	snRNA	chr6:136417812-136417896
chr6	136505865	136506353	+	MT2_Mm	LTR	ERVL	chr6	136506166	136506168	+	ENSMUST00000203988.2,ENSMUSG00000030213.12	Atf7ip	ENSMUSG00000030213.12	ENSMUST00000203988.2	protein_coding	chr6:136506167-136566758
chr6	136576586	136580521	-	Lx4A	LINE	L1	chr6	136577578	136577580	+	ENSMUST00000188805.1,ENSMUSG00000030213.12	Atf7ip	ENSMUSG00000030213.12	ENSMUST00000188805.1	protein_coding	chr6:136577579-136582411
chr6	136828804	136829284	-	MT2B2	LTR	ERVL	chr6	136828842	136828844	+	ENSMUST00000052702.6,ENSMUSG00000047515.8	BC049715	ENSMUSG00000047515.8	ENSMUST00000052702.6	protein_coding	chr6:136828843-136840536
chr6	136941737	136941787	+	(GA)n	Simple_repeat	Simple_repeat	chr6	136941755	136941757	-	ENSMUST00000032344.11,ENSMUSG00000030220.13	Arhgdib	ENSMUSG00000030220.13	ENSMUST00000032344.11	protein_coding	chr6:136923655-136941756
chr6	137519730	137519910	-	B4A	SINE	B4	chr6	137519759	137519761	-	ENSMUST00000127179.1,ENSMUSG00000015766.14	Eps8	ENSMUSG00000015766.14	ENSMUST00000127179.1	protein_coding	chr6:137514340-137519760
chr6	137593520	137593696	+	(GGAA)n	Simple_repeat	Simple_repeat	chr6	137593574	137593576	-	ENSMUST00000203153.1,ENSMUSG00000107878.1	Gm44106	ENSMUSG00000107878.1	ENSMUST00000203153.1	TEC	chr6:137591977-137593575
chr6	137649189	137649259	+	GC_rich	Low_complexity	Low_complexity	chr6	137649228	137649230	-	ENSMUST00000153933.7,ENSMUSG00000015766.14	Eps8	ENSMUSG00000015766.14	ENSMUST00000153933.7	protein_coding	chr6:137527395-137649229
chr6	137649189	137649259	+	GC_rich	Low_complexity	Low_complexity	chr6	137649241	137649243	-	ENSMUST00000134630.5,ENSMUSG00000015766.14	Eps8	ENSMUSG00000015766.14	ENSMUST00000134630.5	protein_coding	chr6:137539337-137649242
chr6	137772357	137772379	+	GC_rich	Low_complexity	Low_complexity	chr6	137772372	137772374	+	ENSMUST00000203046.2,ENSMUSG00000030225.11	Dera	ENSMUSG00000030225.11	ENSMUST00000203046.2	protein_coding	chr6:137772373-137782977
chr6	137777842	137778015	-	RSINE1	SINE	B4	chr6	137777992	137777994	+	ENSMUST00000203754.1,ENSMUSG00000030225.11	Dera	ENSMUSG00000030225.11	ENSMUST00000203754.1	protein_coding	chr6:137777993-137779657
chr6	137835281	137835673	-	MTA_Mm	LTR	ERVL-MaLR	chr6	137835556	137835558	+	ENSMUST00000205060.1,ENSMUSG00000030225.11	Dera	ENSMUSG00000030225.11	ENSMUST00000205060.1	protein_coding	chr6:137835557-137838080
chr6	137919862	137919973	-	B3	SINE	B2	chr6	137919970	137919972	-	ENSMUST00000177773.1,ENSMUSG00000094466.1	Gm24308	ENSMUSG00000094466.1	ENSMUST00000177773.1	miRNA	chr6:137919858-137919971
chr6	138422915	138422967	+	C-rich	Low_complexity	Low_complexity	chr6	138422916	138422918	-	ENSMUST00000161450.7,ENSMUSG00000030226.12	Lmo3	ENSMUSG00000030226.12	ENSMUST00000161450.7	protein_coding	chr6:138365595-138422917
chr6	138422999	138423066	+	(TC)n	Simple_repeat	Simple_repeat	chr6	138422998	138423000	-	ENSMUST00000162185.7,ENSMUSG00000030226.12	Lmo3	ENSMUSG00000030226.12	ENSMUST00000162185.7	protein_coding	chr6:138377208-138422999
chr6	138443744	138444070	+	IAPEY2_LTR	LTR	ERVK	chr6	138443972	138443974	+	ENSMUST00000204221.1,ENSMUSG00000107675.1	Gm30332	ENSMUSG00000107675.1	ENSMUST00000204221.1	antisense	chr6:138443973-138461615
chr6	138658482	138658614	-	B1F1	SINE	Alu	chr6	138658543	138658545	-	ENSMUST00000054786.5,ENSMUSG00000046717.5	Igbp1b	ENSMUSG00000046717.5	ENSMUST00000054786.5	protein_coding	chr6:138657089-138658544
chr6	139136920	139137257	-	IAPLTR1_Mm	LTR	ERVK	chr6	139137126	139137128	+	ENSMUST00000204132.1,ENSMUSG00000108178.1	Gm44267	ENSMUSG00000108178.1	ENSMUST00000204132.1	TEC	chr6:139137127-139137511
chr6	139140503	139141707	-	IAPEz-int	LTR	ERVK	chr6	139140769	139140771	+	ENSMUST00000204814.1,ENSMUSG00000107569.1	Gm44268	ENSMUSG00000107569.1	ENSMUST00000204814.1	TEC	chr6:139140770-139140933
chr6	139196190	139196665	+	Lx7	LINE	L1	chr6	139196230	139196232	-	ENSMUST00000158278.1,ENSMUSG00000088903.1	Gm25434	ENSMUSG00000088903.1	ENSMUST00000158278.1	scaRNA	chr6:139196065-139196231
chr6	139322362	139322743	-	RLTR31B2	LTR	ERVK	chr6	139322575	139322577	-	ENSMUST00000204038.1,ENSMUSG00000108128.1	4922502N22Rik	ENSMUSG00000108128.1	ENSMUST00000204038.1	lincRNA	chr6:139315597-139322576
chr6	139557268	139557675	-	RMER15	LTR	ERVL	chr6	139557610	139557612	-	ENSMUST00000203246.1,ENSMUSG00000107679.1	4930404I20Rik	ENSMUSG00000107679.1	ENSMUST00000203246.1	lincRNA	chr6:139555559-139557611
chr6	139829748	139830943	-	IAPEz-int	LTR	ERVK	chr6	139830386	139830388	+	ENSMUST00000204549.1,ENSMUSG00000107870.1	Gm43940	ENSMUSG00000107870.1	ENSMUST00000204549.1	TEC	chr6:139830387-139830551
chr6	139841457	139841770	+	MTE2b	LTR	ERVL-MaLR	chr6	139841502	139841504	+	ENSMUST00000187223.6,ENSMUSG00000030228.18	Pik3c2g	ENSMUSG00000030228.18	ENSMUST00000187223.6	protein_coding	chr6:139841503-139861755
chr6	139841457	139841770	+	MTE2b	LTR	ERVL-MaLR	chr6	139841580	139841582	+	ENSMUST00000187448.1,ENSMUSG00000030228.18	Pik3c2g	ENSMUSG00000030228.18	ENSMUST00000187448.1	protein_coding	chr6:139841581-139900069
chr6	140319629	140319731	+	5S	rRNA	rRNA	chr6	140319629	140319631	+	ENSMUST00000083948.1,ENSMUSG00000065882.1	n-R5s168	ENSMUSG00000065882.1	ENSMUST00000083948.1	rRNA	chr6:140319630-140319733
chr6	140423988	140424064	+	GC_rich	Low_complexity	Low_complexity	chr6	140424053	140424055	+	ENSMUST00000087622.5,ENSMUSG00000030231.11	Plekha5	ENSMUSG00000030231.11	ENSMUST00000087622.5	protein_coding	chr6:140424054-140597110
chr6	140530962	140531132	+	7SK	RNA	RNA	chr6	140530962	140530964	+	ENSMUST00000122528.1,ENSMUSG00000084477.1	Gm25780	ENSMUSG00000084477.1	ENSMUST00000122528.1	misc_RNA	chr6:140530963-140531215
chr6	140576933	140577143	-	ORR1E	LTR	ERVL-MaLR	chr6	140577134	140577136	+	ENSMUST00000203315.1,ENSMUSG00000030231.11	Plekha5	ENSMUSG00000030231.11	ENSMUST00000203315.1	protein_coding	chr6:140577135-140579678
chr6	140622632	140622747	-	B1F2	SINE	Alu	chr6	140622662	140622664	+	ENSMUST00000032359.14,ENSMUSG00000030232.18	Aebp2	ENSMUSG00000030232.18	ENSMUST00000032359.14	protein_coding	chr6:140622663-140655481
chr6	140729106	140729304	+	B3A	SINE	B2	chr6	140729283	140729285	+	ENSMUST00000111844.1,ENSMUSG00000079264.1	Gm11077	ENSMUSG00000079264.1	ENSMUST00000111844.1	protein_coding	chr6:140729284-140756053
chr6	140955444	140955616	+	(TCCCC)n	Simple_repeat	Simple_repeat	chr6	140955608	140955610	+	ENSMUST00000204271.2,ENSMUSG00000107638.2	Gm30524	ENSMUSG00000107638.2	ENSMUST00000204271.2	lincRNA	chr6:140955609-141044134
chr6	140955616	140955666	-	ID_B1	SINE	B4	chr6	140955634	140955636	+	ENSMUST00000204355.1,ENSMUSG00000107638.2	Gm30524	ENSMUSG00000107638.2	ENSMUST00000204355.1	lincRNA	chr6:140955635-141042434
chr6	141546137	141546164	+	(TG)n	Simple_repeat	Simple_repeat	chr6	141546163	141546165	+	ENSMUST00000203755.1,ENSMUSG00000030235.17	Slco1c1	ENSMUSG00000030235.17	ENSMUST00000203755.1	protein_coding	chr6:141546164-141548463
chr6	141546164	141546225	+	RMER12C	LTR	ERVK	chr6	141546163	141546165	+	ENSMUST00000203755.1,ENSMUSG00000030235.17	Slco1c1	ENSMUSG00000030235.17	ENSMUST00000203755.1	protein_coding	chr6:141546164-141548463
chr6	141652132	141652270	-	B1_Mur3	SINE	Alu	chr6	141652254	141652256	+	ENSMUST00000162675.1,ENSMUSG00000030236.10	Slco1b2	ENSMUSG00000030236.10	ENSMUST00000162675.1	protein_coding	chr6:141652255-141656906
chr6	141915116	141915292	-	7SK	RNA	RNA	chr6	141915291	141915293	-	ENSMUST00000157279.1,ENSMUSG00000087904.1	Gm22036	ENSMUSG00000087904.1	ENSMUST00000157279.1	misc_RNA	chr6:141915078-141915292
chr6	141946772	141947184	-	MTD	LTR	ERVL-MaLR	chr6	141946809	141946811	-	ENSMUST00000168119.7,ENSMUSG00000041698.11	Slco1a1	ENSMUSG00000041698.11	ENSMUST00000168119.7	protein_coding	chr6:141907282-141946810
chr6	141946772	141947184	-	MTD	LTR	ERVL-MaLR	chr6	141946961	141946963	-	ENSMUST00000042119.5,ENSMUSG00000041698.11	Slco1a1	ENSMUSG00000041698.11	ENSMUST00000042119.5	protein_coding	chr6:141907853-141946962
chr6	141946772	141947184	-	MTD	LTR	ERVL-MaLR	chr6	141946815	141946817	-	ENSMUST00000171651.1,ENSMUSG00000041698.11	Slco1a1	ENSMUSG00000041698.11	ENSMUST00000171651.1	protein_coding	chr6:141922774-141946816
chr6	142161475	142161712	-	RLTR22_Mur	LTR	ERVK	chr6	142161492	142161494	+	ENSMUST00000173695.1,ENSMUSG00000092500.1	Gm20400	ENSMUSG00000092500.1	ENSMUST00000173695.1	antisense	chr6:142161493-142173796
chr6	142186096	142187103	+	RLTR13D3	LTR	ERVK	chr6	142186152	142186154	-	ENSMUST00000111827.3,ENSMUSG00000079262.3	Slco1a6	ENSMUSG00000079262.3	ENSMUST00000111827.3	protein_coding	chr6:142085761-142186153
chr6	142186096	142187103	+	RLTR13D3	LTR	ERVK	chr6	142186148	142186150	-	ENSMUST00000172984.1,ENSMUSG00000079262.3	Slco1a6	ENSMUSG00000079262.3	ENSMUST00000172984.1	protein_coding	chr6:142109207-142186149
chr6	142208488	142209244	-	RLTR13C2	LTR	ERVK	chr6	142208520	142208522	-	ENSMUST00000174455.1,ENSMUSG00000079262.3	Slco1a6	ENSMUSG00000079262.3	ENSMUST00000174455.1	protein_coding	chr6:142161048-142208521
chr6	142363703	142364224	+	L1Md_F2	LINE	L1	chr6	142364216	142364218	-	ENSMUST00000154870.1,ENSMUSG00000030243.16	Recql	ENSMUSG00000030243.16	ENSMUST00000154870.1	protein_coding	chr6:142362758-142364217
chr6	142971471	142971937	+	MT2C_Mm	LTR	ERVL	chr6	142971751	142971753	+	ENSMUST00000205115.1,ENSMUSG00000108085.1	A930014E10Rik	ENSMUSG00000108085.1	ENSMUST00000205115.1	lincRNA	chr6:142971752-142973818
chr6	142989477	142989645	+	MLT1L	LTR	ERVL-MaLR	chr6	142989609	142989611	+	ENSMUST00000203259.1,ENSMUSG00000107839.1	4930434O05Rik	ENSMUSG00000107839.1	ENSMUST00000203259.1	lincRNA	chr6:142989610-142989996
chr6	143099845	143099876	+	GC_rich	Low_complexity	Low_complexity	chr6	143099848	143099850	-	ENSMUST00000204967.2,ENSMUSG00000030279.15	C2cd5	ENSMUSG00000030279.15	ENSMUST00000204967.2	protein_coding	chr6:143070580-143099849
chr6	143651155	143651436	-	Lx8	LINE	L1	chr6	143651287	143651289	-	ENSMUST00000150559.1,ENSMUSG00000086887.1	1700060C16Rik	ENSMUSG00000086887.1	ENSMUST00000150559.1	lincRNA	chr6:143593353-143651288
chr6	143947084	143947171	+	MLT1A	LTR	ERVL-MaLR	chr6	143947105	143947107	-	ENSMUST00000111748.7,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000111748.7	protein_coding	chr6:143832835-143947106
chr6	143947084	143947171	+	MLT1A	LTR	ERVL-MaLR	chr6	143947100	143947102	-	ENSMUST00000111746.7,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000111746.7	protein_coding	chr6:143839443-143947101
chr6	143947084	143947171	+	MLT1A	LTR	ERVL-MaLR	chr6	143947096	143947098	-	ENSMUST00000144289.3,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000144289.3	protein_coding	chr6:143844815-143947097
chr6	143947084	143947171	+	MLT1A	LTR	ERVL-MaLR	chr6	143947087	143947089	-	ENSMUST00000124233.6,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000124233.6	protein_coding	chr6:143861441-143947088
chr6	143990359	143990949	-	L1ME1	LINE	L1	chr6	143990866	143990868	-	ENSMUST00000204049.1,ENSMUSG00000107796.1	Gm44068	ENSMUSG00000107796.1	ENSMUST00000204049.1	TEC	chr6:143988740-143990867
chr6	144209468	144209551	+	CT-rich	Low_complexity	Low_complexity	chr6	144209479	144209481	-	ENSMUST00000038815.13,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000038815.13	protein_coding	chr6:143828425-144209480
chr6	144209468	144209551	+	CT-rich	Low_complexity	Low_complexity	chr6	144209479	144209481	-	ENSMUST00000142294.7,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000142294.7	protein_coding	chr6:144021142-144209480
chr6	144209551	144209635	+	IMPB_01	Satellite	Satellite	chr6	144209567	144209569	-	ENSMUST00000170367.8,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000170367.8	protein_coding	chr6:143828425-144209568
chr6	144209551	144209635	+	IMPB_01	Satellite	Satellite	chr6	144209557	144209559	-	ENSMUST00000111749.7,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000111749.7	protein_coding	chr6:143831615-144209558
chr6	144209551	144209635	+	IMPB_01	Satellite	Satellite	chr6	144209567	144209569	-	ENSMUST00000150087.1,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000150087.1	protein_coding	chr6:144154829-144209568
chr6	144672828	144672958	+	B4	SINE	B4	chr6	144672867	144672869	+	ENSMUST00000139351.7,ENSMUSG00000085785.7	Sox5os3	ENSMUSG00000085785.7	ENSMUST00000139351.7	antisense	chr6:144672868-144693834
chr6	144781918	144781977	+	(TG)n	Simple_repeat	Simple_repeat	chr6	144781976	144781978	-	ENSMUST00000141102.7,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000141102.7	protein_coding	chr6:143843739-144781977
chr6	144781918	144781977	+	(TG)n	Simple_repeat	Simple_repeat	chr6	144781918	144781920	-	ENSMUST00000149451.7,ENSMUSG00000041540.16	Sox5	ENSMUSG00000041540.16	ENSMUST00000149451.7	protein_coding	chr6:144104452-144781919
chr6	145035074	145035247	+	B4	SINE	B4	chr6	145035196	145035198	-	ENSMUST00000145911.3,ENSMUSG00000030268.17	Bcat1	ENSMUSG00000030268.17	ENSMUST00000145911.3	protein_coding	chr6:145004398-145035197
chr6	145038084	145038188	-	5S	rRNA	rRNA	chr6	145038187	145038189	-	ENSMUST00000158242.1,ENSMUSG00000088867.1	Gm23071	ENSMUSG00000088867.1	ENSMUST00000158242.1	rRNA	chr6:145038074-145038188
chr6	145115491	145115824	+	ORR1B2	LTR	ERVL-MaLR	chr6	145115652	145115654	+	ENSMUST00000135984.7,ENSMUSG00000030263.13	Lrmp	ENSMUSG00000030263.13	ENSMUST00000135984.7	protein_coding	chr6:145115653-145174928
chr6	145154576	145157845	-	Lx7	LINE	L1	chr6	145157746	145157748	+	ENSMUST00000132937.2,ENSMUSG00000030263.13	Lrmp	ENSMUSG00000030263.13	ENSMUST00000132937.2	protein_coding	chr6:145157747-145171704
chr6	145241063	145241291	+	L1MB7	LINE	L1	chr6	145241226	145241228	-	ENSMUST00000203605.1,ENSMUSG00000107756.1	Gm44164	ENSMUSG00000107756.1	ENSMUST00000203605.1	TEC	chr6:145238667-145241227
chr6	145250158	145250230	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	145250176	145250178	-	ENSMUST00000111710.7,ENSMUSG00000030265.14	Kras	ENSMUSG00000030265.14	ENSMUST00000111710.7	protein_coding	chr6:145220245-145250177
chr6	145250158	145250230	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	145250169	145250171	-	ENSMUST00000156486.1,ENSMUSG00000030265.14	Kras	ENSMUSG00000030265.14	ENSMUST00000156486.1	protein_coding	chr6:145220297-145250170
chr6	145250158	145250230	+	(CCG)n	Simple_repeat	Simple_repeat	chr6	145250201	145250203	-	ENSMUST00000155145.1,ENSMUSG00000030265.14	Kras	ENSMUSG00000030265.14	ENSMUST00000155145.1	protein_coding	chr6:145246704-145250202
chr6	145288055	145288257	-	7SK	RNA	RNA	chr6	145288256	145288258	-	ENSMUST00000157227.1,ENSMUSG00000087852.1	Gm22793	ENSMUSG00000087852.1	ENSMUST00000157227.1	misc_RNA	chr6:145287928-145288257
chr6	145304215	145304375	-	RSINE1	SINE	B4	chr6	145304309	145304311	+	ENSMUST00000204474.1,ENSMUSG00000108234.1	Gm44428	ENSMUSG00000108234.1	ENSMUST00000204474.1	TEC	chr6:145304310-145305183
chr6	145390285	145390480	-	RLTR28	LTR	ERVL	chr6	145390307	145390309	+	ENSMUST00000136180.1,ENSMUSG00000087204.1	1700073E17Rik	ENSMUSG00000087204.1	ENSMUST00000136180.1	transcribed_processed_pseudogene	chr6:145390308-145392049
chr6	145463938	145464194	-	MTC	LTR	ERVL-MaLR	chr6	145464188	145464190	+	ENSMUST00000158156.1,ENSMUSG00000088781.1	Gm25373	ENSMUSG00000088781.1	ENSMUST00000158156.1	snoRNA	chr6:145464189-145464303
chr6	145614298	145614623	-	MTD	LTR	ERVL-MaLR	chr6	145614318	145614320	-	ENSMUST00000144829.1,ENSMUSG00000054966.13	Lmntd1	ENSMUSG00000054966.13	ENSMUST00000144829.1	protein_coding	chr6:145543291-145614319
chr6	145746696	145746869	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr6	145746747	145746749	+	ENSMUST00000111704.7,ENSMUSG00000030259.12	Rassf8	ENSMUSG00000030259.12	ENSMUST00000111704.7	protein_coding	chr6:145746748-145821079
chr6	145931416	145931818	+	MTD	LTR	ERVL-MaLR	chr6	145931640	145931642	+	ENSMUST00000111702.7,ENSMUSG00000030255.13	Sspn	ENSMUSG00000030255.13	ENSMUST00000111702.7	protein_coding	chr6:145931641-145965223
chr6	146146996	146147368	-	MTC	LTR	ERVL-MaLR	chr6	146147207	146147209	-	ENSMUST00000137938.1,ENSMUSG00000030287.15	Itpr2	ENSMUSG00000030287.15	ENSMUST00000137938.1	protein_coding	chr6:146120595-146147208
chr6	146376213	146376609	+	MTA_Mm	LTR	ERVL-MaLR	chr6	146376416	146376418	+	ENSMUST00000204247.1,ENSMUSG00000107743.1	Gm44087	ENSMUSG00000107743.1	ENSMUST00000204247.1	TEC	chr6:146376417-146378186
chr6	146463589	146463698	-	RLTR20B3A_MM	LTR	ERVK	chr6	146463606	146463608	-	ENSMUST00000117133.1,ENSMUSG00000082120.1	Gm15720	ENSMUSG00000082120.1	ENSMUST00000117133.1	processed_pseudogene	chr6:146463326-146463607
chr6	146502208	146502290	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr6	146502222	146502224	-	ENSMUST00000139732.3,ENSMUSG00000030287.15	Itpr2	ENSMUSG00000030287.15	ENSMUST00000139732.3	protein_coding	chr6:146373123-146502223
chr6	146646973	146647161	-	B3	SINE	B2	chr6	146647159	146647161	+	ENSMUST00000075077.2,ENSMUSG00000030291.12	Med21	ENSMUSG00000030291.12	ENSMUST00000075077.2	protein_coding	chr6:146647160-146650602
chr6	146657067	146657247	-	MLTR14	LTR	ERV1	chr6	146657217	146657219	+	ENSMUST00000146754.1,ENSMUSG00000085238.1	4930479D17Rik	ENSMUSG00000085238.1	ENSMUST00000146754.1	lincRNA	chr6:146657218-146665403
chr6	146762563	146762711	-	B1_Mus1	SINE	Alu	chr6	146762580	146762582	+	ENSMUST00000203084.1,ENSMUSG00000108108.1	Gm44270	ENSMUSG00000108108.1	ENSMUST00000203084.1	TEC	chr6:146762581-146763814
chr6	146830068	146830595	+	L1_Mus3	LINE	L1	chr6	146830523	146830525	+	ENSMUST00000204578.1,ENSMUSG00000040187.15	Arntl2	ENSMUSG00000040187.15	ENSMUST00000204578.1	protein_coding	chr6:146830524-146833522
chr6	147061188	147061304	-	B1_Mur1	SINE	Alu	chr6	147061250	147061252	+	ENSMUST00000123139.1,ENSMUSG00000040112.9	Mrps35	ENSMUSG00000040112.9	ENSMUST00000123139.1	protein_coding	chr6:147061251-147070899
chr6	147180021	147180395	+	MTD	LTR	ERVL-MaLR	chr6	147180243	147180245	+	ENSMUST00000151979.7,ENSMUSG00000085600.7	E330012B07Rik	ENSMUSG00000085600.7	ENSMUST00000151979.7	lincRNA	chr6:147180244-147208285
chr6	147180021	147180395	+	MTD	LTR	ERVL-MaLR	chr6	147180261	147180263	+	ENSMUST00000133471.1,ENSMUSG00000085600.7	E330012B07Rik	ENSMUSG00000085600.7	ENSMUST00000133471.1	lincRNA	chr6:147180262-147202764
chr6	147243385	147243827	-	Lx8	LINE	L1	chr6	147243800	147243802	-	ENSMUST00000153786.1,ENSMUSG00000086021.1	Gm15767	ENSMUSG00000086021.1	ENSMUST00000153786.1	lincRNA	chr6:147242527-147243801
chr6	147243385	147243827	-	Lx8	LINE	L1	chr6	147243792	147243794	-	ENSMUST00000153521.1,ENSMUSG00000086021.1	Gm15767	ENSMUSG00000086021.1	ENSMUST00000153521.1	lincRNA	chr6:147242723-147243793
chr6	147472291	147472450	+	MLT1A0	LTR	ERVL-MaLR	chr6	147472329	147472331	-	ENSMUST00000169225.2,ENSMUSG00000072660.5	Gm6288	ENSMUSG00000072660.5	ENSMUST00000169225.2	antisense	chr6:147442802-147472330
chr6	147719411	147719559	-	MIRb	SINE	MIR	chr6	147719450	147719452	-	ENSMUST00000126447.1,ENSMUSG00000086019.1	Gm15762	ENSMUSG00000086019.1	ENSMUST00000126447.1	lincRNA	chr6:147709982-147719451
chr6	148067867	148067922	+	L3b	LINE	CR1	chr6	148067872	148067874	-	ENSMUST00000162391.1,ENSMUSG00000089948.1	Far2os1	ENSMUSG00000089948.1	ENSMUST00000162391.1	antisense	chr6:148060855-148067873
chr6	148202709	148202798	-	B3A	SINE	B2	chr6	148202789	148202791	-	ENSMUST00000125469.7,ENSMUSG00000030304.11	Ergic2	ENSMUSG00000030304.11	ENSMUST00000125469.7	protein_coding	chr6:148195196-148202790
chr6	148358654	148358844	-	B4A	SINE	B4	chr6	148358794	148358796	+	ENSMUST00000204618.1,ENSMUSG00000108148.1	Gm44020	ENSMUSG00000108148.1	ENSMUST00000204618.1	antisense	chr6:148358795-148362113
chr6	148441447	148441781	-	MTD	LTR	ERVL-MaLR	chr6	148441634	148441636	-	ENSMUST00000140797.3,ENSMUSG00000030306.14	Tmtc1	ENSMUSG00000030306.14	ENSMUST00000140797.3	protein_coding	chr6:148246734-148441635
chr6	148441447	148441781	-	MTD	LTR	ERVL-MaLR	chr6	148441634	148441636	-	ENSMUST00000203991.1,ENSMUSG00000030306.14	Tmtc1	ENSMUSG00000030306.14	ENSMUST00000203991.1	protein_coding	chr6:148411074-148441635
chr6	148614123	148614599	+	RMER6B	LTR	ERVK	chr6	148614308	148614310	-	ENSMUST00000150112.7,ENSMUSG00000070995.10	Gm6313	ENSMUSG00000070995.10	ENSMUST00000150112.7	lincRNA	chr6:148606786-148614309
chr6	148778521	148778699	+	L1M2	LINE	L1	chr6	148778698	148778700	-	ENSMUST00000204016.1,ENSMUSG00000040029.14	Ipo8	ENSMUSG00000040029.14	ENSMUST00000204016.1	protein_coding	chr6:148776287-148778699
chr6	148778699	148778882	+	B3	SINE	B2	chr6	148778698	148778700	-	ENSMUST00000204016.1,ENSMUSG00000040029.14	Ipo8	ENSMUSG00000040029.14	ENSMUST00000204016.1	protein_coding	chr6:148776287-148778699
chr6	148848730	148849192	+	RLTR12D	LTR	ERVK	chr6	148849183	148849185	-	ENSMUST00000132535.1,ENSMUSG00000030309.16	Caprin2	ENSMUSG00000030309.16	ENSMUST00000132535.1	protein_coding	chr6:148844039-148849184
chr6	148890808	148890830	+	(A)n	Simple_repeat	Simple_repeat	chr6	148890826	148890828	-	ENSMUST00000204564.1,ENSMUSG00000030309.16	Caprin2	ENSMUSG00000030309.16	ENSMUST00000204564.1	protein_coding	chr6:148884537-148890827
chr6	148900493	148900864	+	RMER6A	LTR	ERVK	chr6	148900637	148900639	-	ENSMUST00000205074.1,ENSMUSG00000108254.1	Gm43908	ENSMUSG00000108254.1	ENSMUST00000205074.1	TEC	chr6:148899167-148900638
chr6	149052517	149052623	-	U6	snRNA	snRNA	chr6	149052622	149052624	-	ENSMUST00000083730.1,ENSMUSG00000065664.1	Gm22578	ENSMUSG00000065664.1	ENSMUST00000083730.1	snRNA	chr6:149052517-149052623
chr6	149074002	149074106	-	U6	snRNA	snRNA	chr6	149074105	149074107	-	ENSMUST00000083264.1,ENSMUSG00000065198.1	Gm23462	ENSMUSG00000065198.1	ENSMUST00000083264.1	snRNA	chr6:149074003-149074106
chr6	149081243	149081344	+	B1_Mur1	SINE	Alu	chr6	149081294	149081296	-	ENSMUST00000145555.1,ENSMUSG00000030313.15	Dennd5b	ENSMUSG00000030313.15	ENSMUST00000145555.1	protein_coding	chr6:149068557-149081295
chr6	149130126	149130272	+	B1_Mus2	SINE	Alu	chr6	149130169	149130171	+	ENSMUST00000087348.3,ENSMUSG00000067292.3	Gm10203	ENSMUSG00000067292.3	ENSMUST00000087348.3	protein_coding	chr6:149130170-149130710
chr6	149173275	149173459	-	RMER5	LTR	ERV1	chr6	149173370	149173372	-	ENSMUST00000127743.7,ENSMUSG00000068250.13	Amn1	ENSMUSG00000068250.13	ENSMUST00000127743.7	protein_coding	chr6:149157267-149173371
chr6	149215160	149215427	+	RLTR51A_Mm	LTR	ERVK?	chr6	149215184	149215186	-	ENSMUST00000205198.1,ENSMUSG00000107526.1	1700003I16Rik	ENSMUSG00000107526.1	ENSMUST00000205198.1	lincRNA	chr6:149199095-149215185
chr6	149317212	149317365	-	B1_Mm	SINE	Alu	chr6	149317333	149317335	+	ENSMUST00000127680.1,ENSMUSG00000032712.16	Resf1	ENSMUSG00000032712.16	ENSMUST00000127680.1	protein_coding	chr6:149317334-149325967
chr6	149324525	149324662	+	B1_Mus1	SINE	Alu	chr6	149324655	149324657	+	ENSMUST00000187881.1,ENSMUSG00000032712.16	Resf1	ENSMUSG00000032712.16	ENSMUST00000187881.1	protein_coding	chr6:149324656-149325773
chr6	149576392	149576786	+	MTA_Mm	LTR	ERVL-MaLR	chr6	149576460	149576462	+	ENSMUST00000178512.1,ENSMUSG00000094467.1	Gm24307	ENSMUSG00000094467.1	ENSMUST00000178512.1	miRNA	chr6:149576461-149576561
chr6	149581679	149582704	+	MurSatRep1	Unknown	Unknown	chr6	149582011	149582013	+	ENSMUST00000144085.2,ENSMUSG00000096299.3	Gm21814	ENSMUSG00000096299.3	ENSMUST00000144085.2	lincRNA	chr6:149582012-149583656
chr7	3120250	3120582	-	Lx6	LINE	L1	chr7	3120271	3120273	-	ENSMUST00000203926.1,ENSMUSG00000108044.1	Gm44459	ENSMUSG00000108044.1	ENSMUST00000203926.1	processed_pseudogene	chr7:3120113-3120272
chr7	3164376	3164738	-	RMER6B	LTR	ERVK	chr7	3164500	3164502	-	ENSMUST00000205185.1,ENSMUSG00000054753.9	AU018091	ENSMUSG00000054753.9	ENSMUST00000205185.1	protein_coding	chr7:3154658-3164501
chr7	3328711	3328858	+	B1_Mus1	SINE	Alu	chr7	3328837	3328839	+	ENSMUST00000203454.1,ENSMUSG00000078816.9	Prkcg	ENSMUSG00000078816.9	ENSMUST00000203454.1	protein_coding	chr7:3328838-3330020
chr7	3332843	3332968	+	G-rich	Low_complexity	Low_complexity	chr7	3332954	3332956	+	ENSMUST00000092891.5,ENSMUSG00000069806.5	Cacng7	ENSMUSG00000069806.5	ENSMUST00000092891.5	protein_coding	chr7:3332955-3368221
chr7	3337400	3337591	+	ID_B1	SINE	B4	chr7	3337544	3337546	+	ENSMUST00000203304.1,ENSMUSG00000107620.1	Gm44256	ENSMUSG00000107620.1	ENSMUST00000203304.1	TEC	chr7:3337545-3337879
chr7	3338144	3338288	-	B1F	SINE	Alu	chr7	3338215	3338217	+	ENSMUST00000203497.1,ENSMUSG00000069806.5	Cacng7	ENSMUSG00000069806.5	ENSMUST00000203497.1	protein_coding	chr7:3338216-3366899
chr7	3390553	3390878	+	CT-rich	Low_complexity	Low_complexity	chr7	3390682	3390684	+	ENSMUST00000182222.7,ENSMUSG00000053395.15	Cacng8	ENSMUSG00000053395.15	ENSMUST00000182222.7	protein_coding	chr7:3390683-3415648
chr7	3415061	3415083	+	GC_rich	Low_complexity	Low_complexity	chr7	3415065	3415067	+	ENSMUST00000178285.1,ENSMUSG00000094210.1	Gm23450	ENSMUSG00000094210.1	ENSMUST00000178285.1	miRNA	chr7:3415066-3415156
chr7	3491057	3491186	+	PB1D9	SINE	Alu	chr7	3491078	3491080	-	ENSMUST00000203093.1,ENSMUSG00000107480.1	Gm44165	ENSMUSG00000107480.1	ENSMUST00000203093.1	TEC	chr7:3489611-3491079
chr7	3589095	3589490	+	MTA_Mm	LTR	ERVL-MaLR	chr7	3589163	3589165	+	ENSMUST00000179750.1,ENSMUSG00000095674.1	Gm25100	ENSMUSG00000095674.1	ENSMUST00000179750.1	miRNA	chr7:3589164-3589264
chr7	3604096	3604212	+	PB1D9	SINE	Alu	chr7	3604149	3604151	-	ENSMUST00000206503.1,ENSMUSG00000108644.1	Gm44920	ENSMUSG00000108644.1	ENSMUST00000206503.1	lincRNA	chr7:3591646-3604150
chr7	3635984	3636140	-	ORR1C2	LTR	ERVL-MaLR	chr7	3636094	3636096	+	ENSMUST00000134047.1,ENSMUSG00000008373.16	Prpf31	ENSMUSG00000008373.16	ENSMUST00000134047.1	protein_coding	chr7:3636095-3637057
chr7	3643158	3643290	+	ID_B1	SINE	B4	chr7	3643249	3643251	-	ENSMUST00000206075.1,ENSMUSG00000085039.2	Gm15927	ENSMUSG00000085039.2	ENSMUST00000206075.1	processed_transcript	chr7:3642306-3643250
chr7	3666250	3666428	+	B3	SINE	B2	chr7	3666251	3666253	+	ENSMUST00000138926.1,ENSMUSG00000086032.1	Gm15929	ENSMUSG00000086032.1	ENSMUST00000138926.1	antisense	chr7:3666252-3670278
chr7	3670289	3670493	-	B3	SINE	B2	chr7	3670481	3670483	-	ENSMUST00000136678.2,ENSMUSG00000019734.16	Tmc4	ENSMUSG00000019734.16	ENSMUST00000136678.2	protein_coding	chr7:3665958-3670482
chr7	4101889	4102059	+	U1	snRNA	snRNA	chr7	4101889	4101891	+	ENSMUST00000097237.1,ENSMUSG00000075719.1	Gm23741	ENSMUSG00000075719.1	ENSMUST00000097237.1	snRNA	chr7:4101890-4102060
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119529	4119531	+	ENSMUST00000126971.7,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000126971.7	protein_coding	chr7:4119530-4134949
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119529	4119531	+	ENSMUST00000119661.7,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000119661.7	protein_coding	chr7:4119530-4135347
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119532	4119534	+	ENSMUST00000129423.7,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000129423.7	protein_coding	chr7:4119533-4136708
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119555	4119557	+	ENSMUST00000148760.7,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000148760.7	protein_coding	chr7:4119556-4125619
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119584	4119586	+	ENSMUST00000079415.11,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000079415.11	protein_coding	chr7:4119585-4135333
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119587	4119589	+	ENSMUST00000206987.1,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000206987.1	protein_coding	chr7:4119588-4125628
chr7	4119507	4119649	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	4119621	4119623	+	ENSMUST00000153673.7,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000153673.7	protein_coding	chr7:4119622-4128265
chr7	4122143	4122189	+	(CA)n	Simple_repeat	Simple_repeat	chr7	4122148	4122150	+	ENSMUST00000134536.7,ENSMUSG00000030428.16	Ttyh1	ENSMUSG00000030428.16	ENSMUST00000134536.7	protein_coding	chr7:4122149-4135407
chr7	4177215	4177305	-	ORR1D1	LTR	ERVL-MaLR	chr7	4177234	4177236	-	ENSMUST00000118965.1,ENSMUSG00000082782.1	Gm5319	ENSMUSG00000082782.1	ENSMUST00000118965.1	processed_pseudogene	chr7:4176363-4177235
chr7	4388249	4388776	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	4388560	4388562	-	ENSMUST00000177728.1,ENSMUSG00000096075.1	Gm25349	ENSMUSG00000096075.1	ENSMUST00000177728.1	miRNA	chr7:4388452-4388561
chr7	4392808	4393334	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	4393119	4393121	-	ENSMUST00000178240.1,ENSMUSG00000095246.1	Gm24752	ENSMUSG00000095246.1	ENSMUST00000178240.1	miRNA	chr7:4393011-4393120
chr7	4441995	4442020	+	(CATA)n	Simple_repeat	Simple_repeat	chr7	4442014	4442016	-	ENSMUST00000104772.1,ENSMUSG00000077965.1	Gm24605	ENSMUSG00000077965.1	ENSMUST00000104772.1	miRNA	chr7:4441920-4442015
chr7	4460350	4460702	-	IAPLTR1_Mm	LTR	ERVK	chr7	4460673	4460675	+	ENSMUST00000163804.7,ENSMUSG00000006154.13	Eps8l1	ENSMUSG00000006154.13	ENSMUST00000163804.7	protein_coding	chr7:4460674-4469970
chr7	4460350	4460702	-	IAPLTR1_Mm	LTR	ERVK	chr7	4460701	4460703	+	ENSMUST00000167298.1,ENSMUSG00000006154.13	Eps8l1	ENSMUSG00000006154.13	ENSMUST00000167298.1	protein_coding	chr7:4460702-4469227
chr7	4501502	4501579	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	4501528	4501530	-	ENSMUST00000125220.2,ENSMUSG00000019254.16	Ppp1r12c	ENSMUSG00000019254.16	ENSMUST00000125220.2	protein_coding	chr7:4489811-4501529
chr7	4501661	4501686	+	GC_rich	Low_complexity	Low_complexity	chr7	4501679	4501681	-	ENSMUST00000013886.8,ENSMUSG00000019254.16	Ppp1r12c	ENSMUSG00000019254.16	ENSMUST00000013886.8	protein_coding	chr7:4481520-4501680
chr7	4501661	4501686	+	GC_rich	Low_complexity	Low_complexity	chr7	4501663	4501665	-	ENSMUST00000145689.6,ENSMUSG00000019254.16	Ppp1r12c	ENSMUSG00000019254.16	ENSMUST00000145689.6	protein_coding	chr7:4489172-4501664
chr7	4507883	4508063	+	(TG)n	Simple_repeat	Simple_repeat	chr7	4508024	4508026	-	ENSMUST00000086502.4,ENSMUSG00000064179.13	Tnnt1	ENSMUSG00000064179.13	ENSMUST00000086502.4	protein_coding	chr7:4504786-4508025
chr7	4509776	4509818	-	B1F	SINE	Alu	chr7	4509797	4509799	-	ENSMUST00000169571.1,ENSMUSG00000064179.13	Tnnt1	ENSMUSG00000064179.13	ENSMUST00000169571.1	protein_coding	chr7:4507600-4509798
chr7	4515104	4515191	-	ID_B1	SINE	B4	chr7	4515106	4515108	-	ENSMUST00000163560.1,ENSMUSG00000064179.13	Tnnt1	ENSMUSG00000064179.13	ENSMUST00000163560.1	protein_coding	chr7:4513829-4515107
chr7	4579863	4580380	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	4580177	4580179	-	ENSMUST00000103950.2,ENSMUSG00000077138.2	Gm23577	ENSMUSG00000077138.2	ENSMUST00000103950.2	miRNA	chr7:4580069-4580178
chr7	4626971	4627116	+	B1_Mur4	SINE	Alu	chr7	4626977	4626979	+	ENSMUST00000206485.1,ENSMUSG00000108320.1	Gm44877	ENSMUSG00000108320.1	ENSMUST00000206485.1	antisense	chr7:4626978-4630544
chr7	4692224	4692286	-	B1_Mus2	SINE	Alu	chr7	4692242	4692244	+	ENSMUST00000205666.1,ENSMUSG00000035390.16	Brsk1	ENSMUSG00000035390.16	ENSMUST00000205666.1	protein_coding	chr7:4692243-4705426
chr7	4793746	4793855	-	B1_Mus2	SINE	Alu	chr7	4793849	4793851	+	ENSMUST00000129888.1,ENSMUSG00000030432.12	Rpl28	ENSMUSG00000030432.12	ENSMUST00000129888.1	protein_coding	chr7:4793850-4794562
chr7	4811067	4811214	-	B1_Mus2	SINE	Alu	chr7	4811118	4811120	-	ENSMUST00000206139.1,ENSMUSG00000060860.8	Ube2s	ENSMUSG00000060860.8	ENSMUST00000206139.1	protein_coding	chr7:4807027-4811119
chr7	4836163	4836282	+	C-rich	Low_complexity	Low_complexity	chr7	4836173	4836175	-	ENSMUST00000117452.7,ENSMUSG00000053550.13	Shisa7	ENSMUSG00000053550.13	ENSMUST00000117452.7	protein_coding	chr7:4825552-4836174
chr7	4869938	4870307	-	ORR1D2	LTR	ERVL-MaLR	chr7	4870257	4870259	-	ENSMUST00000208816.1,ENSMUSG00000052605.12	Isoc2b	ENSMUSG00000052605.12	ENSMUST00000208816.1	protein_coding	chr7:4845162-4870258
chr7	4912225	4912557	-	ORR1B2	LTR	ERVL-MaLR	chr7	4912356	4912358	-	ENSMUST00000208121.1,ENSMUSG00000109441.1	Gm44983	ENSMUSG00000109441.1	ENSMUST00000208121.1	lincRNA	chr7:4908886-4912357
chr7	4996058	4996120	+	G-rich	Low_complexity	Low_complexity	chr7	4996100	4996102	-	ENSMUST00000108572.1,ENSMUSG00000051550.10	Zfp579	ENSMUSG00000051550.10	ENSMUST00000108572.1	protein_coding	chr7:4992854-4996101
chr7	4996058	4996120	+	G-rich	Low_complexity	Low_complexity	chr7	4996084	4996086	-	ENSMUST00000162502.1,ENSMUSG00000051550.10	Zfp579	ENSMUSG00000051550.10	ENSMUST00000162502.1	protein_coding	chr7:4994201-4996085
chr7	5029296	5029349	+	(CAT)n	Simple_repeat	Simple_repeat	chr7	5029323	5029325	+	ENSMUST00000207193.1,ENSMUSG00000074405.8	Zfp865	ENSMUSG00000074405.8	ENSMUST00000207193.1	protein_coding	chr7:5029324-5033138
chr7	5062098	5062152	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	5062142	5062144	+	ENSMUST00000005041.14,ENSMUSG00000030435.16	U2af2	ENSMUSG00000030435.16	ENSMUST00000005041.14	protein_coding	chr7:5062143-5079938
chr7	5277343	5277450	-	U6	snRNA	snRNA	chr7	5277449	5277451	-	ENSMUST00000101956.1,ENSMUSG00000075906.1	Gm23942	ENSMUSG00000075906.1	ENSMUST00000101956.1	snRNA	chr7:5277344-5277450
chr7	5304753	5304896	-	L1_Mus1	LINE	L1	chr7	5304877	5304879	+	ENSMUST00000207938.1,ENSMUSG00000109155.1	Gm18757	ENSMUSG00000109155.1	ENSMUST00000207938.1	processed_pseudogene	chr7:5304878-5308018
chr7	5353149	5353520	-	MER21C	LTR	ERVL	chr7	5353485	5353487	+	ENSMUST00000207410.1,ENSMUSG00000108904.1	Gm45147	ENSMUSG00000108904.1	ENSMUST00000207410.1	processed_pseudogene	chr7:5353486-5353857
chr7	5611952	5612115	+	B3	SINE	B2	chr7	5612067	5612069	-	ENSMUST00000164880.2,ENSMUSG00000094313.2	Vmn1r61	ENSMUSG00000094313.2	ENSMUST00000164880.2	protein_coding	chr7:5610251-5612068
chr7	5674579	5674742	-	B3	SINE	B2	chr7	5674626	5674628	+	ENSMUST00000173956.1,ENSMUSG00000092579.1	Vmn1r62	ENSMUSG00000092579.1	ENSMUST00000173956.1	protein_coding	chr7:5674627-5676383
chr7	5762936	5763420	-	MMERVK9E_I-int	LTR	ERVK	chr7	5763416	5763418	-	ENSMUST00000208212.1,ENSMUSG00000109540.1	Gm44821	ENSMUSG00000109540.1	ENSMUST00000208212.1	processed_pseudogene	chr7:5759108-5763417
chr7	5902672	5905137	-	MMERVK9C_I-int	LTR	ERVK	chr7	5905018	5905020	+	ENSMUST00000174652.2,ENSMUSG00000092393.2	Gm20399	ENSMUSG00000092393.2	ENSMUST00000174652.2	processed_pseudogene	chr7:5905019-5905150
chr7	6136374	6136540	+	RSINE1	SINE	B4	chr7	6136429	6136431	+	ENSMUST00000208973.1,ENSMUSG00000108923.1	4933431C10Rik	ENSMUSG00000108923.1	ENSMUST00000208973.1	TEC	chr7:6136430-6137695
chr7	6173740	6173909	-	B3	SINE	B2	chr7	6173806	6173808	+	ENSMUST00000137450.1,ENSMUSG00000044876.15	Zfp444	ENSMUSG00000044876.15	ENSMUST00000137450.1	protein_coding	chr7:6173807-6183823
chr7	6173934	6174088	-	MIRb	SINE	MIR	chr7	6173973	6173975	+	ENSMUST00000208192.1,ENSMUSG00000044876.15	Zfp444	ENSMUSG00000044876.15	ENSMUST00000208192.1	protein_coding	chr7:6173974-6189897
chr7	6173934	6174088	-	MIRb	SINE	MIR	chr7	6174034	6174036	+	ENSMUST00000108565.7,ENSMUSG00000044876.15	Zfp444	ENSMUSG00000044876.15	ENSMUST00000108565.7	protein_coding	chr7:6174035-6189846
chr7	6179796	6180121	-	RMER21A	LTR	ERV1	chr7	6179974	6179976	+	ENSMUST00000208578.1,ENSMUSG00000109165.1	Gm45148	ENSMUSG00000109165.1	ENSMUST00000208578.1	sense_intronic	chr7:6179975-6183561
chr7	6183561	6183612	-	Lx7	LINE	L1	chr7	6183575	6183577	+	ENSMUST00000136777.1,ENSMUSG00000044876.15	Zfp444	ENSMUSG00000044876.15	ENSMUST00000136777.1	protein_coding	chr7:6183576-6188233
chr7	6290528	6290642	+	MurSatRep1	Unknown	Unknown	chr7	6290533	6290535	+	ENSMUST00000147784.1,ENSMUSG00000054893.15	Zfp667	ENSMUSG00000054893.15	ENSMUST00000147784.1	protein_coding	chr7:6290534-6294616
chr7	6389425	6389548	+	MurSatRep1	Unknown	Unknown	chr7	6389535	6389537	+	ENSMUST00000207465.1,ENSMUSG00000062861.8	Zfp28	ENSMUSG00000062861.8	ENSMUST00000207465.1	protein_coding	chr7:6389536-6393773
chr7	6508539	6508582	+	(CA)n	Simple_repeat	Simple_repeat	chr7	6508557	6508559	-	ENSMUST00000209097.1,ENSMUSG00000093877.4	Olfr1348	ENSMUSG00000093877.4	ENSMUST00000209097.1	protein_coding	chr7:6501814-6508558
chr7	6512234	6512323	+	5S	rRNA	rRNA	chr7	6512234	6512236	+	ENSMUST00000122705.1,ENSMUSG00000084654.1	n-R5s150	ENSMUSG00000084654.1	ENSMUST00000122705.1	rRNA	chr7:6512235-6512342
chr7	6520192	6520345	+	L1MA9	LINE	L1	chr7	6520304	6520306	-	ENSMUST00000207043.1,ENSMUSG00000048067.8	Olfr1349	ENSMUSG00000048067.8	ENSMUST00000207043.1	protein_coding	chr7:6514853-6520305
chr7	6520192	6520345	+	L1MA9	LINE	L1	chr7	6520304	6520306	-	ENSMUST00000207075.1,ENSMUSG00000048067.8	Olfr1349	ENSMUSG00000048067.8	ENSMUST00000207075.1	protein_coding	chr7:6514942-6520305
chr7	6742559	6742758	+	B3	SINE	B2	chr7	6742645	6742647	+	ENSMUST00000207981.1,ENSMUSG00000109131.1	Gm44862	ENSMUSG00000109131.1	ENSMUST00000207981.1	TEC	chr7:6742646-6743700
chr7	6805790	6805981	-	B3	SINE	B2	chr7	6805850	6805852	+	ENSMUST00000207150.1,ENSMUSG00000109430.1	Gm44585	ENSMUSG00000109430.1	ENSMUST00000207150.1	TEC	chr7:6805851-6806457
chr7	6808804	6809014	-	URR1B	DNA	hAT-Charlie	chr7	6809000	6809002	+	ENSMUST00000208395.1,ENSMUSG00000109456.1	Gm44584	ENSMUSG00000109456.1	ENSMUST00000208395.1	TEC	chr7:6809001-6811880
chr7	6900332	6900377	+	(TG)n	Simple_repeat	Simple_repeat	chr7	6900351	6900353	+	ENSMUST00000207399.1,ENSMUSG00000109094.1	Gm44587	ENSMUSG00000109094.1	ENSMUST00000207399.1	TEC	chr7:6900352-6902036
chr7	6942367	6948055	-	L1Md_F2	LINE	L1	chr7	6947601	6947603	+	ENSMUST00000198068.2,ENSMUSG00000051527.11	Usp29	ENSMUSG00000051527.11	ENSMUST00000198068.2	protein_coding	chr7:6947602-6964825
chr7	6975420	6975581	+	ORR1B1	LTR	ERVL-MaLR	chr7	6975463	6975465	-	ENSMUST00000204486.1,ENSMUSG00000108043.2	Zim3	ENSMUSG00000108043.2	ENSMUST00000204486.1	antisense	chr7:6963335-6975464
chr7	9747930	9748282	+	IAPLTR1a_Mm	LTR	ERVK	chr7	9747929	9747931	-	ENSMUST00000209317.1,ENSMUSG00000109862.1	Vmn2r-ps50	ENSMUSG00000109862.1	ENSMUST00000209317.1	unprocessed_pseudogene	chr7:9747811-9747930
chr7	10281701	10281931	+	L1Md_T	LINE	L1	chr7	10281702	10281704	-	ENSMUST00000176694.1,ENSMUSG00000093781.1	Vmn1r-ps47	ENSMUSG00000093781.1	ENSMUST00000176694.1	unprocessed_pseudogene	chr7:10280797-10281703
chr7	10716263	10716369	-	PB1D9	SINE	Alu	chr7	10716313	10716315	+	ENSMUST00000211772.1,ENSMUSG00000110034.1	Gm45379	ENSMUSG00000110034.1	ENSMUST00000211772.1	sense_intronic	chr7:10716314-10716862
chr7	10958457	10958523	-	RLTR20C1_MM	LTR	ERVK	chr7	10958511	10958513	-	ENSMUST00000103800.2,ENSMUSG00000094316.1	Mir297-1	ENSMUSG00000094316.1	ENSMUST00000103800.2	miRNA	chr7:10958437-10958512
chr7	11150493	11150822	-	ORR1A2	LTR	ERVL-MaLR	chr7	11150495	11150497	-	ENSMUST00000209888.1,ENSMUSG00000110066.1	Gm38430	ENSMUSG00000110066.1	ENSMUST00000209888.1	processed_pseudogene	chr7:11149257-11150496
chr7	11182250	11182449	-	ID_B1	SINE	B4	chr7	11182399	11182401	+	ENSMUST00000209825.1,ENSMUSG00000110379.1	Gm6909	ENSMUSG00000110379.1	ENSMUST00000209825.1	unprocessed_pseudogene	chr7:11182400-11188803
chr7	11232997	11233196	-	ID_B1	SINE	B4	chr7	11233146	11233148	+	ENSMUST00000210379.1,ENSMUSG00000110112.1	Gm39481	ENSMUSG00000110112.1	ENSMUST00000210379.1	unprocessed_pseudogene	chr7:11233147-11237022
chr7	11303104	11303592	-	MT2_Mm	LTR	ERVL	chr7	11303337	11303339	-	ENSMUST00000116700.1,ENSMUSG00000080350.1	Gm26248	ENSMUSG00000080350.1	ENSMUST00000116700.1	miRNA	chr7:11303218-11303338
chr7	11385415	11385529	+	B1F2	SINE	Alu	chr7	11385517	11385519	-	ENSMUST00000209832.1,ENSMUSG00000110215.1	Gm45598	ENSMUSG00000110215.1	ENSMUST00000209832.1	transcribed_unprocessed_pseudogene	chr7:11383256-11385518
chr7	11387534	11387733	+	ID_B1	SINE	B4	chr7	11387583	11387585	-	ENSMUST00000210719.1,ENSMUSG00000110215.1	Gm45598	ENSMUSG00000110215.1	ENSMUST00000210719.1	transcribed_unprocessed_pseudogene	chr7:11380620-11387584
chr7	11474290	11474453	+	RMER13B	LTR	ERVK	chr7	11474316	11474318	-	ENSMUST00000209380.1,ENSMUSG00000109950.1	Gm45550	ENSMUSG00000109950.1	ENSMUST00000209380.1	processed_pseudogene	chr7:11473372-11474317
chr7	11478155	11478210	+	(TG)n	Simple_repeat	Simple_repeat	chr7	11478207	11478209	+	ENSMUST00000211459.1,ENSMUSG00000109916.1	Gm45551	ENSMUSG00000109916.1	ENSMUST00000211459.1	unprocessed_pseudogene	chr7:11478208-11479567
chr7	11503946	11504145	+	ID_B1	SINE	B4	chr7	11503995	11503997	-	ENSMUST00000210180.1,ENSMUSG00000110076.1	Gm45549	ENSMUSG00000110076.1	ENSMUST00000210180.1	unprocessed_pseudogene	chr7:11497020-11503996
chr7	11510534	11510759	+	RMER13B	LTR	ERVK	chr7	11510565	11510567	-	ENSMUST00000210695.1,ENSMUSG00000109763.1	Gm18124	ENSMUSG00000109763.1	ENSMUST00000210695.1	processed_pseudogene	chr7:11509861-11510566
chr7	11599997	11600162	+	RMER13B	LTR	ERVK	chr7	11600037	11600039	-	ENSMUST00000211676.1,ENSMUSG00000109694.1	Gm45500	ENSMUSG00000109694.1	ENSMUST00000211676.1	processed_pseudogene	chr7:11599236-11600038
chr7	11624715	11625044	+	ORR1A2	LTR	ERVL-MaLR	chr7	11625041	11625043	+	ENSMUST00000211763.1,ENSMUSG00000109626.1	Gm18641	ENSMUSG00000109626.1	ENSMUST00000211763.1	processed_pseudogene	chr7:11625042-11626287
chr7	11660772	11660822	+	L1Md_F2	LINE	L1	chr7	11660819	11660821	+	ENSMUST00000210593.1,ENSMUSG00000110267.1	Gm45283	ENSMUSG00000110267.1	ENSMUST00000210593.1	processed_pseudogene	chr7:11660820-11661447
chr7	11679972	11682394	-	Lx5	LINE	L1	chr7	11680146	11680148	-	ENSMUST00000227010.1,ENSMUSG00000095430.3	Vmn1r72	ENSMUSG00000095430.3	ENSMUST00000227010.1	protein_coding	chr7:11664479-11680147
chr7	11679972	11682394	-	Lx5	LINE	L1	chr7	11680146	11680148	-	ENSMUST00000209638.2,ENSMUSG00000095430.3	Vmn1r72	ENSMUSG00000095430.3	ENSMUST00000209638.2	protein_coding	chr7:11664479-11680147
chr7	11967149	11967256	-	U6	snRNA	snRNA	chr7	11967255	11967257	-	ENSMUST00000083434.2,ENSMUSG00000065368.2	Gm24414	ENSMUSG00000065368.2	ENSMUST00000083434.2	snRNA	chr7:11967150-11967256
chr7	11967256	11967276	-	L1Md_F2	LINE	L1	chr7	11967255	11967257	-	ENSMUST00000083434.2,ENSMUSG00000065368.2	Gm24414	ENSMUSG00000065368.2	ENSMUST00000083434.2	snRNA	chr7:11967150-11967256
chr7	12086577	12086678	-	MT2B	LTR	ERVL	chr7	12086611	12086613	-	ENSMUST00000086233.2,ENSMUSG00000066807.2	Gm10179	ENSMUSG00000066807.2	ENSMUST00000086233.2	processed_pseudogene	chr7:12085925-12086612
chr7	12113240	12113280	+	L3	LINE	CR1	chr7	12113264	12113266	+	ENSMUST00000173275.1,ENSMUSG00000092350.1	Vmn1r-ps62	ENSMUSG00000092350.1	ENSMUST00000173275.1	unprocessed_pseudogene	chr7:12113265-12114541
chr7	12201602	12201705	-	MLTR73	LTR	ERV1	chr7	12201701	12201703	+	ENSMUST00000173746.1,ENSMUSG00000092351.1	Vmn1r-ps64	ENSMUSG00000092351.1	ENSMUST00000173746.1	unprocessed_pseudogene	chr7:12201702-12202356
chr7	12206264	12206487	-	MMERVK9C_I-int	LTR	ERVK	chr7	12206352	12206354	-	ENSMUST00000210883.1,ENSMUSG00000109630.1	Gm45364	ENSMUSG00000109630.1	ENSMUST00000210883.1	processed_pseudogene	chr7:12206195-12206353
chr7	12221110	12221508	+	MTA_Mm	LTR	ERVL-MaLR	chr7	12221315	12221317	+	ENSMUST00000211557.1,ENSMUSG00000110042.1	Gm4224	ENSMUSG00000110042.1	ENSMUST00000211557.1	lincRNA	chr7:12221316-12225807
chr7	12358694	12359209	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	12359006	12359008	-	ENSMUST00000177845.1,ENSMUSG00000096314.1	Gm23521	ENSMUSG00000096314.1	ENSMUST00000177845.1	miRNA	chr7:12358898-12359007
chr7	12392863	12392957	+	MLTR73	LTR	ERV1	chr7	12392882	12392884	-	ENSMUST00000173436.1,ENSMUSG00000092331.1	Vmn1r-ps66	ENSMUSG00000092331.1	ENSMUST00000173436.1	unprocessed_pseudogene	chr7:12392272-12392883
chr7	12799131	12799298	+	(CATATA)n	Simple_repeat	Simple_repeat	chr7	12799163	12799165	-	ENSMUST00000210952.1,ENSMUSG00000109724.1	Gm18194	ENSMUSG00000109724.1	ENSMUST00000210952.1	transcribed_processed_pseudogene	chr7:12795723-12799164
chr7	12825617	12826110	+	MT2_Mm	LTR	ERVL	chr7	12825917	12825919	+	ENSMUST00000211415.1,ENSMUSG00000110119.1	Gm45593	ENSMUSG00000110119.1	ENSMUST00000211415.1	lincRNA	chr7:12825918-12828121
chr7	12836286	12836428	+	MurSatRep1	Unknown	Unknown	chr7	12836290	12836292	+	ENSMUST00000137718.2,ENSMUSG00000058638.14	Zfp110	ENSMUSG00000058638.14	ENSMUST00000137718.2	protein_coding	chr7:12836291-12846808
chr7	12930774	12930870	+	U6	snRNA	snRNA	chr7	12930773	12930775	+	ENSMUST00000083072.1,ENSMUSG00000065006.1	Gm26325	ENSMUSG00000065006.1	ENSMUST00000083072.1	snRNA	chr7:12930774-12930880
chr7	12998794	12999161	+	MRLTR33	LTR	ERVK	chr7	12999113	12999115	+	ENSMUST00000209577.1,ENSMUSG00000005566.14	Trim28	ENSMUSG00000005566.14	ENSMUST00000209577.1	protein_coding	chr7:12999114-13028525
chr7	13037730	13037886	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	13037745	13037747	-	ENSMUST00000138357.8,ENSMUSG00000005575.16	Ube2m	ENSMUSG00000005575.16	ENSMUST00000138357.8	protein_coding	chr7:13035238-13037746
chr7	13054657	13054680	+	(T)n	Simple_repeat	Simple_repeat	chr7	13054664	13054666	-	ENSMUST00000182515.7,ENSMUSG00000030380.17	Mzf1	ENSMUSG00000030380.17	ENSMUST00000182515.7	protein_coding	chr7:13042361-13054665
chr7	13324401	13324759	+	MER54B	LTR	ERVL	chr7	13324654	13324656	+	ENSMUST00000167232.7,ENSMUSG00000033847.15	Pla2g4c	ENSMUSG00000033847.15	ENSMUST00000167232.7	protein_coding	chr7:13324655-13359350
chr7	13328071	13329125	+	MTA_Mm-int	LTR	ERVL-MaLR	chr7	13328690	13328692	+	ENSMUST00000108257.2,ENSMUSG00000033847.15	Pla2g4c	ENSMUSG00000033847.15	ENSMUST00000108257.2	protein_coding	chr7:13328691-13330084
chr7	13329125	13329497	+	MTA_Mm	LTR	ERVL-MaLR	chr7	13329317	13329319	+	ENSMUST00000043612.9,ENSMUSG00000033847.15	Pla2g4c	ENSMUSG00000033847.15	ENSMUST00000043612.9	protein_coding	chr7:13329318-13360672
chr7	13360805	13361199	+	MTA_Mm	LTR	ERVL-MaLR	chr7	13361110	13361112	+	ENSMUST00000204668.1,ENSMUSG00000108293.1	Pla2g4c-ps	ENSMUSG00000108293.1	ENSMUST00000204668.1	unprocessed_pseudogene	chr7:13361111-13386695
chr7	13364261	13365353	+	Lx3_Mus	LINE	L1	chr7	13365075	13365077	-	ENSMUST00000210046.1,ENSMUSG00000109929.1	Gm45268	ENSMUSG00000109929.1	ENSMUST00000210046.1	processed_pseudogene	chr7:13364707-13365076
chr7	13652819	13654018	-	L1_Mus3	LINE	L1	chr7	13653995	13653997	+	ENSMUST00000187624.1,ENSMUSG00000099400.1	Kat6b-ps1	ENSMUSG00000099400.1	ENSMUST00000187624.1	processed_pseudogene	chr7:13653996-13657428
chr7	14187037	14187368	+	L1VL1	LINE	L1	chr7	14187080	14187082	-	ENSMUST00000190928.1,ENSMUSG00000100378.1	Rpap3-ps1	ENSMUSG00000100378.1	ENSMUST00000190928.1	processed_pseudogene	chr7:14186628-14187081
chr7	14434749	14437916	+	Lx2B2	LINE	L1	chr7	14436446	14436448	-	ENSMUST00000211800.1,ENSMUSG00000030378.15	Sult2a8	ENSMUSG00000030378.15	ENSMUST00000211800.1	protein_coding	chr7:14423523-14436447
chr7	14438470	14438652	-	ID_B1	SINE	B4	chr7	14438550	14438552	-	ENSMUST00000168252.8,ENSMUSG00000030378.15	Sult2a8	ENSMUSG00000030378.15	ENSMUST00000168252.8	protein_coding	chr7:14410686-14438551
chr7	14438470	14438652	-	ID_B1	SINE	B4	chr7	14438508	14438510	-	ENSMUST00000210396.1,ENSMUSG00000030378.15	Sult2a8	ENSMUSG00000030378.15	ENSMUST00000210396.1	protein_coding	chr7:14423523-14438509
chr7	14438470	14438652	-	ID_B1	SINE	B4	chr7	14438560	14438562	-	ENSMUST00000210366.1,ENSMUSG00000030378.15	Sult2a8	ENSMUSG00000030378.15	ENSMUST00000210366.1	protein_coding	chr7:14424758-14438561
chr7	14444775	14445131	+	L1Md_F2	LINE	L1	chr7	14445045	14445047	-	ENSMUST00000209972.1,ENSMUSG00000030378.15	Sult2a8	ENSMUSG00000030378.15	ENSMUST00000209972.1	protein_coding	chr7:14427870-14445046
chr7	14446740	14446865	+	RSINE1	SINE	B4	chr7	14446768	14446770	-	ENSMUST00000125941.2,ENSMUSG00000030378.15	Sult2a8	ENSMUSG00000030378.15	ENSMUST00000125941.2	protein_coding	chr7:14416218-14446769
chr7	14494170	14494591	-	MYSERV6-int	LTR	ERVK	chr7	14494229	14494231	-	ENSMUST00000210034.1,ENSMUSG00000094156.2	Sult2a7	ENSMUSG00000094156.2	ENSMUST00000210034.1	protein_coding	chr7:14465051-14494230
chr7	14618541	14618631	-	RMER20A	LTR	ERVK	chr7	14618554	14618556	-	ENSMUST00000190796.1,ENSMUSG00000041596.12	Nlrp5-ps	ENSMUSG00000041596.12	ENSMUST00000190796.1	transcribed_unprocessed_pseudogene	chr7:14609275-14618555
chr7	14659146	14659607	-	LTRIS_Mus	LTR	ERV1	chr7	14659495	14659497	+	ENSMUST00000183788.7,ENSMUSG00000055942.13	Obox7	ENSMUSG00000055942.13	ENSMUST00000183788.7	protein_coding	chr7:14659496-14665996
chr7	14778668	14778772	+	U6	snRNA	snRNA	chr7	14778668	14778670	+	ENSMUST00000083043.1,ENSMUSG00000064977.1	Gm26056	ENSMUSG00000064977.1	ENSMUST00000083043.1	snRNA	chr7:14778669-14778772
chr7	14912356	14912462	+	U6	snRNA	snRNA	chr7	14912357	14912359	+	ENSMUST00000101946.2,ENSMUSG00000095998.1	Gm24701	ENSMUSG00000095998.1	ENSMUST00000101946.2	snRNA	chr7:14912358-14912462
chr7	15388371	15388833	-	LTRIS_Mus	LTR	ERV1	chr7	15388720	15388722	+	ENSMUST00000036575.15,ENSMUSG00000074369.12	Obox2	ENSMUSG00000074369.12	ENSMUST00000036575.15	protein_coding	chr7:15388721-15398545
chr7	15389529	15393538	-	Lx3A	LINE	L1	chr7	15390175	15390177	+	ENSMUST00000172478.2,ENSMUSG00000074369.12	Obox2	ENSMUSG00000074369.12	ENSMUST00000172478.2	protein_coding	chr7:15390176-15398129
chr7	15546680	15547142	-	LTRIS_Mus	LTR	ERV1	chr7	15546981	15546983	+	ENSMUST00000067288.14,ENSMUSG00000054310.16	Obox1	ENSMUSG00000054310.16	ENSMUST00000067288.14	protein_coding	chr7:15546982-15556866
chr7	15547838	15551846	-	Lx3A	LINE	L1	chr7	15548410	15548412	+	ENSMUST00000173245.1,ENSMUSG00000054310.16	Obox1	ENSMUSG00000054310.16	ENSMUST00000173245.1	protein_coding	chr7:15548411-15556297
chr7	15593229	15593335	+	U6	snRNA	snRNA	chr7	15593230	15593232	+	ENSMUST00000179110.1,ENSMUSG00000096381.1	Gm25354	ENSMUSG00000096381.1	ENSMUST00000179110.1	snRNA	chr7:15593231-15593335
chr7	15627648	15630246	+	L1_Mur1	LINE	L1	chr7	15627875	15627877	-	ENSMUST00000086122.9,ENSMUSG00000066772.12	Obox3	ENSMUSG00000066772.12	ENSMUST00000086122.9	protein_coding	chr7:15479825-15627876
chr7	15627648	15630246	+	L1_Mur1	LINE	L1	chr7	15627875	15627877	-	ENSMUST00000174443.7,ENSMUSG00000066772.12	Obox3	ENSMUSG00000066772.12	ENSMUST00000174443.7	protein_coding	chr7:15625302-15627876
chr7	15627648	15630246	+	L1_Mur1	LINE	L1	chr7	15627765	15627767	-	ENSMUST00000182148.1,ENSMUSG00000066772.12	Obox3	ENSMUSG00000066772.12	ENSMUST00000182148.1	protein_coding	chr7:15625480-15627766
chr7	15653607	15653638	+	L1_Mur3	LINE	L1	chr7	15653623	15653625	-	ENSMUST00000198160.2,ENSMUSG00000106346.2	Gtpbp4-ps6	ENSMUSG00000106346.2	ENSMUST00000198160.2	processed_pseudogene	chr7:15653333-15653624
chr7	15695211	15695317	+	U6	snRNA	snRNA	chr7	15695212	15695214	+	ENSMUST00000179259.1,ENSMUSG00000095116.1	Gm23714	ENSMUSG00000095116.1	ENSMUST00000179259.1	snRNA	chr7:15695213-15695317
chr7	15749774	15750243	-	LTRIS_Mus	LTR	ERV1	chr7	15750130	15750132	+	ENSMUST00000173455.7,ENSMUSG00000074366.9	Obox5	ENSMUSG00000074366.9	ENSMUST00000173455.7	protein_coding	chr7:15750131-15758656
chr7	15871402	15871462	+	(TC)n	Simple_repeat	Simple_repeat	chr7	15871401	15871403	-	ENSMUST00000132563.1,ENSMUSG00000041578.15	Crx	ENSMUSG00000041578.15	ENSMUST00000132563.1	protein_coding	chr7:15868056-15871402
chr7	15872333	15872473	-	B1_Mus2	SINE	Alu	chr7	15872387	15872389	-	ENSMUST00000174318.7,ENSMUSG00000041578.15	Crx	ENSMUSG00000041578.15	ENSMUST00000174318.7	protein_coding	chr7:15865948-15872388
chr7	15946246	15946393	+	B1_Mus2	SINE	Alu	chr7	15946247	15946249	+	ENSMUST00000175508.2,ENSMUSG00000093249.2	Gm24576	ENSMUSG00000093249.2	ENSMUST00000175508.2	misc_RNA	chr7:15946248-15946495
chr7	16122851	16122954	+	ID_B1	SINE	B4	chr7	16122871	16122873	+	ENSMUST00000127584.1,ENSMUSG00000006021.5	Kptn	ENSMUSG00000006021.5	ENSMUST00000127584.1	protein_coding	chr7:16122872-16123996
chr7	16130207	16130366	+	C-rich	Low_complexity	Low_complexity	chr7	16130347	16130349	+	ENSMUST00000168693.2,ENSMUSG00000030376.8	Slc8a2	ENSMUSG00000030376.8	ENSMUST00000168693.2	protein_coding	chr7:16130348-16160513
chr7	16175211	16175320	+	GA-rich	Low_complexity	Low_complexity	chr7	16175274	16175276	+	ENSMUST00000176506.7,ENSMUSG00000041420.18	Meis3	ENSMUSG00000041420.18	ENSMUST00000176506.7	protein_coding	chr7:16175275-16186504
chr7	16308327	16308428	-	B1F	SINE	Alu	chr7	16308392	16308394	+	ENSMUST00000209688.1,ENSMUSG00000002083.13	Bbc3	ENSMUSG00000002083.13	ENSMUST00000209688.1	protein_coding	chr7:16308393-16312414
chr7	16400904	16400951	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	16400909	16400911	+	ENSMUST00000214735.1,ENSMUSG00000059273.9	Zc3h4	ENSMUSG00000059273.9	ENSMUST00000214735.1	protein_coding	chr7:16400910-16416973
chr7	16471812	16471932	+	5S	rRNA	rRNA	chr7	16471812	16471814	+	ENSMUST00000083959.1,ENSMUSG00000065893.1	n-R5s151	ENSMUSG00000065893.1	ENSMUST00000083959.1	rRNA	chr7:16471813-16471931
chr7	16619806	16619932	-	ID_B1	SINE	B4	chr7	16619831	16619833	-	ENSMUST00000188725.1,ENSMUSG00000101008.1	Gm29442	ENSMUSG00000101008.1	ENSMUST00000188725.1	lincRNA	chr7:16618627-16619832
chr7	16624574	16624677	-	U6	snRNA	snRNA	chr7	16624676	16624678	-	ENSMUST00000082811.1,ENSMUSG00000064745.1	Gm24708	ENSMUSG00000064745.1	ENSMUST00000082811.1	snRNA	chr7:16624575-16624677
chr7	16624677	16624724	-	L1_Mus2	LINE	L1	chr7	16624676	16624678	-	ENSMUST00000082811.1,ENSMUSG00000064745.1	Gm24708	ENSMUSG00000064745.1	ENSMUST00000082811.1	snRNA	chr7:16624575-16624677
chr7	16746645	16746790	+	ID_B1	SINE	B4	chr7	16746763	16746765	+	ENSMUST00000141496.1,ENSMUSG00000008036.11	Ap2s1	ENSMUSG00000008036.11	ENSMUST00000141496.1	protein_coding	chr7:16746764-16749294
chr7	16792944	16793151	-	B3	SINE	B2	chr7	16793026	16793028	+	ENSMUST00000134407.1,ENSMUSG00000001918.17	Slc1a5	ENSMUSG00000001918.17	ENSMUST00000134407.1	protein_coding	chr7:16793027-16796159
chr7	16816732	16816821	+	GC_rich	Low_complexity	Low_complexity	chr7	16816731	16816733	-	ENSMUST00000061390.8,ENSMUSG00000048920.8	Fkrp	ENSMUSG00000048920.8	ENSMUST00000061390.8	protein_coding	chr7:16809246-16816732
chr7	16816732	16816821	+	GC_rich	Low_complexity	Low_complexity	chr7	16816731	16816733	-	ENSMUST00000205368.1,ENSMUSG00000048920.8	Fkrp	ENSMUSG00000048920.8	ENSMUST00000205368.1	protein_coding	chr7:16814744-16816732
chr7	16863267	16863376	-	B1_Mur2	SINE	Alu	chr7	16863346	16863348	+	ENSMUST00000206510.1,ENSMUSG00000041187.16	Prkd2	ENSMUSG00000041187.16	ENSMUST00000206510.1	protein_coding	chr7:16863347-16869890
chr7	16875275	16875419	+	G-rich	Low_complexity	Low_complexity	chr7	16875316	16875318	+	ENSMUST00000108493.2,ENSMUSG00000078794.4	Dact3	ENSMUSG00000078794.4	ENSMUST00000108493.2	protein_coding	chr7:16875317-16887462
chr7	16953397	16953501	-	U6	snRNA	snRNA	chr7	16953500	16953502	-	ENSMUST00000082755.1,ENSMUSG00000064689.1	Gm25815	ENSMUSG00000064689.1	ENSMUST00000082755.1	snRNA	chr7:16953395-16953501
chr7	17363613	17364560	+	RMER17B	LTR	ERVK	chr7	17363771	17363773	-	ENSMUST00000206616.1,ENSMUSG00000108782.1	Gm32772	ENSMUSG00000108782.1	ENSMUST00000206616.1	lincRNA	chr7:17314328-17363772
chr7	17363613	17364560	+	RMER17B	LTR	ERVK	chr7	17363771	17363773	-	ENSMUST00000205898.1,ENSMUSG00000108782.1	Gm32772	ENSMUSG00000108782.1	ENSMUST00000205898.1	lincRNA	chr7:17314407-17363772
chr7	17371391	17371864	-	IAPLTR2a2_Mm	LTR	ERVK	chr7	17371626	17371628	-	ENSMUST00000207022.1,ENSMUSG00000108782.1	Gm32772	ENSMUSG00000108782.1	ENSMUST00000207022.1	lincRNA	chr7:17287678-17371627
chr7	17423905	17424852	+	RMER17B	LTR	ERVK	chr7	17424098	17424100	-	ENSMUST00000205665.1,ENSMUSG00000108441.1	Gm32846	ENSMUSG00000108441.1	ENSMUST00000205665.1	lincRNA	chr7:17392760-17424099
chr7	17610561	17611080	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	17610765	17610767	+	ENSMUST00000179510.1,ENSMUSG00000096673.1	Gm24520	ENSMUSG00000096673.1	ENSMUST00000179510.1	miRNA	chr7:17610766-17610875
chr7	17617965	17618484	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	17618169	17618171	+	ENSMUST00000103895.1,ENSMUSG00000094381.1	Gm25068	ENSMUSG00000094381.1	ENSMUST00000103895.1	miRNA	chr7:17618170-17618279
chr7	17686306	17686921	-	Lx6	LINE	L1	chr7	17686312	17686314	-	ENSMUST00000206051.1,ENSMUSG00000108638.1	Gm45150	ENSMUSG00000108638.1	ENSMUST00000206051.1	processed_pseudogene	chr7:17685847-17686313
chr7	17799984	17805772	+	L1Md_A	LINE	L1	chr7	17799995	17799997	-	ENSMUST00000206459.1,ENSMUSG00000108685.1	Gm45149	ENSMUSG00000108685.1	ENSMUST00000206459.1	TEC	chr7:17797825-17799996
chr7	18017025	18017420	-	MTA_Mm	LTR	ERVL-MaLR	chr7	18017351	18017353	-	ENSMUST00000175466.1,ENSMUSG00000093207.1	Gm22414	ENSMUSG00000093207.1	ENSMUST00000175466.1	miRNA	chr7:18017252-18017352
chr7	18396781	18401255	-	MMERVK10C-int	LTR	ERVK	chr7	18400864	18400866	-	ENSMUST00000208748.1,ENSMUSG00000109209.1	Gm45104	ENSMUSG00000109209.1	ENSMUST00000208748.1	TEC	chr7:18396516-18400865
chr7	18417337	18421945	-	L1_Mus2	LINE	L1	chr7	18417932	18417934	-	ENSMUST00000102377.1,ENSMUSG00000076332.1	Gm24715	ENSMUSG00000076332.1	ENSMUST00000102377.1	miRNA	chr7:18417839-18417933
chr7	18549084	18549191	+	U6	snRNA	snRNA	chr7	18549084	18549086	+	ENSMUST00000083379.1,ENSMUSG00000065313.1	Gm26062	ENSMUSG00000065313.1	ENSMUST00000083379.1	snRNA	chr7:18549085-18549191
chr7	18745102	18745209	-	U6	snRNA	snRNA	chr7	18745208	18745210	-	ENSMUST00000179697.1,ENSMUSG00000096479.1	Gm24464	ENSMUSG00000096479.1	ENSMUST00000179697.1	snRNA	chr7:18745103-18745209
chr7	18745209	18746507	-	MMERVK9C_I-int	LTR	ERVK	chr7	18745208	18745210	-	ENSMUST00000179697.1,ENSMUSG00000096479.1	Gm24464	ENSMUSG00000096479.1	ENSMUST00000179697.1	snRNA	chr7:18745103-18745209
chr7	18871013	18871505	+	MT2_Mm	LTR	ERVL	chr7	18871330	18871332	+	ENSMUST00000206206.1,ENSMUSG00000030413.7	Pglyrp1	ENSMUSG00000030413.7	ENSMUST00000206206.1	protein_coding	chr7:18871331-18889399
chr7	18871013	18871505	+	MT2_Mm	LTR	ERVL	chr7	18871369	18871371	+	ENSMUST00000206569.1,ENSMUSG00000030413.7	Pglyrp1	ENSMUSG00000030413.7	ENSMUST00000206569.1	protein_coding	chr7:18871370-18890459
chr7	18997037	18997356	+	ZP3AR	Satellite	Satellite	chr7	18997065	18997067	-	ENSMUST00000205975.1,ENSMUSG00000086533.2	Mypopos	ENSMUSG00000086533.2	ENSMUST00000205975.1	antisense	chr7:18994746-18997066
chr7	19001149	19001229	-	LTR88a	LTR	Gypsy?	chr7	19001194	19001196	-	ENSMUST00000206304.1,ENSMUSG00000086533.2	Mypopos	ENSMUSG00000086533.2	ENSMUST00000206304.1	antisense	chr7:18993234-19001195
chr7	19001149	19001229	-	LTR88a	LTR	Gypsy?	chr7	19001221	19001223	-	ENSMUST00000124897.2,ENSMUSG00000086533.2	Mypopos	ENSMUSG00000086533.2	ENSMUST00000124897.2	antisense	chr7:18993553-19001222
chr7	19001149	19001229	-	LTR88a	LTR	Gypsy?	chr7	19001205	19001207	-	ENSMUST00000206381.1,ENSMUSG00000086533.2	Mypopos	ENSMUSG00000086533.2	ENSMUST00000206381.1	antisense	chr7:18997261-19001206
chr7	19057382	19057473	+	L2a	LINE	L2	chr7	19057394	19057396	+	ENSMUST00000144991.1,ENSMUSG00000040866.13	Rsph6a	ENSMUSG00000040866.13	ENSMUST00000144991.1	protein_coding	chr7:19057395-19065568
chr7	19094531	19094614	+	G-rich	Low_complexity	Low_complexity	chr7	19094593	19094595	+	ENSMUST00000049454.5,ENSMUSG00000040841.5	Six5	ENSMUSG00000040841.5	ENSMUST00000049454.5	protein_coding	chr7:19094594-19098549
chr7	19147516	19147570	+	CT-rich	Low_complexity	Low_complexity	chr7	19147527	19147529	-	ENSMUST00000205979.1,ENSMUSG00000030407.2	Qpctl	ENSMUSG00000030407.2	ENSMUST00000205979.1	protein_coding	chr7:19143561-19147528
chr7	19242129	19242290	+	U1	snRNA	snRNA	chr7	19242129	19242131	+	ENSMUST00000082646.1,ENSMUSG00000064580.1	Gm25134	ENSMUSG00000064580.1	ENSMUST00000082646.1	snRNA	chr7:19242130-19242289
chr7	19258053	19258183	-	RSINE1	SINE	B4	chr7	19258130	19258132	-	ENSMUST00000161488.1,ENSMUSG00000030403.9	Vasp	ENSMUSG00000030403.9	ENSMUST00000161488.1	protein_coding	chr7:19257584-19258131
chr7	19344731	19344882	+	RLTR51A_Mm	LTR	ERVK?	chr7	19344777	19344779	+	ENSMUST00000003645.8,ENSMUSG00000003549.9	Ercc1	ENSMUSG00000003549.9	ENSMUST00000003645.8	protein_coding	chr7:19344778-19356524
chr7	19360645	19360774	-	B1_Mur1	SINE	Alu	chr7	19360645	19360647	+	ENSMUST00000127785.7,ENSMUSG00000040734.14	Ppp1r13l	ENSMUSG00000040734.14	ENSMUST00000127785.7	protein_coding	chr7:19360646-19369933
chr7	19404698	19404778	+	RSINE1	SINE	B4	chr7	19404775	19404777	+	ENSMUST00000208079.1,ENSMUSG00000030399.2	Ckm	ENSMUSG00000030399.2	ENSMUST00000208079.1	protein_coding	chr7:19404776-19415533
chr7	19428433	19428493	-	ZP3AR	Satellite	Satellite	chr7	19428451	19428453	-	ENSMUST00000208650.1,ENSMUSG00000030397.10	Mark4	ENSMUSG00000030397.10	ENSMUST00000208650.1	protein_coding	chr7:19425467-19428452
chr7	19458734	19458871	+	G-rich	Low_complexity	Low_complexity	chr7	19458820	19458822	-	ENSMUST00000085715.6,ENSMUSG00000030397.10	Mark4	ENSMUSG00000030397.10	ENSMUST00000085715.6	protein_coding	chr7:19424775-19458821
chr7	19458734	19458871	+	G-rich	Low_complexity	Low_complexity	chr7	19458794	19458796	-	ENSMUST00000209058.1,ENSMUSG00000030397.10	Mark4	ENSMUSG00000030397.10	ENSMUST00000209058.1	protein_coding	chr7:19425108-19458795
chr7	19460801	19460935	-	U1	snRNA	snRNA	chr7	19460934	19460936	-	ENSMUST00000083454.1,ENSMUSG00000065388.1	Gm23099	ENSMUSG00000065388.1	ENSMUST00000083454.1	snRNA	chr7:19460797-19460935
chr7	19460934	19461032	-	PB1D7	SINE	Alu	chr7	19460934	19460936	-	ENSMUST00000083454.1,ENSMUSG00000065388.1	Gm23099	ENSMUSG00000065388.1	ENSMUST00000083454.1	snRNA	chr7:19460797-19460935
chr7	19573340	19573385	+	GC_rich	Low_complexity	Low_complexity	chr7	19573342	19573344	-	ENSMUST00000051364.3,ENSMUSG00000044709.6	Gemin7	ENSMUSG00000044709.6	ENSMUST00000051364.3	protein_coding	chr7:19564949-19573343
chr7	19573340	19573385	+	GC_rich	Low_complexity	Low_complexity	chr7	19573384	19573386	-	ENSMUST00000119912.1,ENSMUSG00000044709.6	Gemin7	ENSMUSG00000044709.6	ENSMUST00000119912.1	protein_coding	chr7:19565246-19573385
chr7	19573822	19573909	+	GA-rich	Low_complexity	Low_complexity	chr7	19573822	19573824	-	ENSMUST00000117222.1,ENSMUSG00000044709.6	Gemin7	ENSMUSG00000044709.6	ENSMUST00000117222.1	protein_coding	chr7:19564946-19573823
chr7	19582963	19583097	-	B1_Mus1	SINE	Alu	chr7	19582985	19582987	-	ENSMUST00000208427.1,ENSMUSG00000061028.7	Clasrp	ENSMUSG00000061028.7	ENSMUST00000208427.1	protein_coding	chr7:19581038-19582986
chr7	19602186	19602377	-	L2	LINE	L2	chr7	19602293	19602295	-	ENSMUST00000180681.1,ENSMUSG00000097246.1	Gm26890	ENSMUSG00000097246.1	ENSMUST00000180681.1	lincRNA	chr7:19597293-19602294
chr7	19629392	19629454	+	GC_rich	Low_complexity	Low_complexity	chr7	19629437	19629439	-	ENSMUST00000094762.9,ENSMUSG00000002983.17	Relb	ENSMUSG00000002983.17	ENSMUST00000094762.9	protein_coding	chr7:19606217-19629438
chr7	19629392	19629454	+	GC_rich	Low_complexity	Low_complexity	chr7	19629437	19629439	-	ENSMUST00000049912.14,ENSMUSG00000002983.17	Relb	ENSMUSG00000002983.17	ENSMUST00000049912.14	protein_coding	chr7:19606217-19629438
chr7	19629392	19629454	+	GC_rich	Low_complexity	Low_complexity	chr7	19629437	19629439	-	ENSMUST00000148040.7,ENSMUSG00000002983.17	Relb	ENSMUSG00000002983.17	ENSMUST00000148040.7	protein_coding	chr7:19606217-19629438
chr7	19629392	19629454	+	GC_rich	Low_complexity	Low_complexity	chr7	19629437	19629439	-	ENSMUST00000137615.7,ENSMUSG00000002983.17	Relb	ENSMUSG00000002983.17	ENSMUST00000137615.7	protein_coding	chr7:19606217-19629438
chr7	19629392	19629454	+	GC_rich	Low_complexity	Low_complexity	chr7	19629437	19629439	-	ENSMUST00000131759.7,ENSMUSG00000002983.17	Relb	ENSMUSG00000002983.17	ENSMUST00000131759.7	protein_coding	chr7:19606217-19629438
chr7	19629392	19629454	+	GC_rich	Low_complexity	Low_complexity	chr7	19629437	19629439	-	ENSMUST00000098754.4,ENSMUSG00000002983.17	Relb	ENSMUSG00000002983.17	ENSMUST00000098754.4	protein_coding	chr7:19606223-19629438
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19665032	19665034	-	ENSMUST00000055242.10,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000055242.10	protein_coding	chr7:19631571-19665033
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19665029	19665031	-	ENSMUST00000208554.1,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000208554.1	protein_coding	chr7:19631586-19665030
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19665020	19665022	-	ENSMUST00000208846.1,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000208846.1	protein_coding	chr7:19633249-19665021
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19665005	19665007	-	ENSMUST00000208215.1,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000208215.1	protein_coding	chr7:19646770-19665006
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19664954	19664956	-	ENSMUST00000208174.1,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000208174.1	protein_coding	chr7:19646804-19664955
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19664954	19664956	-	ENSMUST00000208599.1,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000208599.1	protein_coding	chr7:19646804-19664955
chr7	19664950	19665054	+	C-rich	Low_complexity	Low_complexity	chr7	19665015	19665017	-	ENSMUST00000208594.1,ENSMUSG00000002981.10	Clptm1	ENSMUSG00000002981.10	ENSMUST00000208594.1	protein_coding	chr7:19655556-19665016
chr7	19673822	19673952	-	B1_Mus2	SINE	Alu	chr7	19673919	19673921	-	ENSMUST00000134116.7,ENSMUSG00000002992.17	Apoc2	ENSMUSG00000002992.17	ENSMUST00000134116.7	protein_coding	chr7:19671584-19673920
chr7	19812809	19812884	-	ID2	SINE	ID	chr7	19812832	19812834	-	ENSMUST00000123375.7,ENSMUSG00000053175.17	Bcl3	ENSMUSG00000053175.17	ENSMUST00000123375.7	protein_coding	chr7:19811349-19812833
chr7	19846824	19847009	-	ID_B1	SINE	B4	chr7	19846972	19846974	+	ENSMUST00000207965.1,ENSMUSG00000109424.1	Gm44658	ENSMUSG00000109424.1	ENSMUST00000207965.1	lincRNA	chr7:19846973-19847609
chr7	19897092	19897527	+	MT2_Mm	LTR	ERVL	chr7	19897333	19897335	+	ENSMUST00000207134.1,ENSMUSG00000108942.1	Gm44660	ENSMUSG00000108942.1	ENSMUST00000207134.1	TEC	chr7:19897334-19899798
chr7	19920707	19920805	-	PB1D7	SINE	Alu	chr7	19920728	19920730	+	ENSMUST00000162649.1,ENSMUSG00000090075.1	Gm16251	ENSMUSG00000090075.1	ENSMUST00000162649.1	antisense	chr7:19920729-19927607
chr7	19991154	19991565	+	RLTR9F	LTR	ERVK	chr7	19991464	19991466	+	ENSMUST00000207805.1,ENSMUSG00000060508.16	Nlrp9b	ENSMUSG00000060508.16	ENSMUST00000207805.1	protein_coding	chr7:19991465-20019269
chr7	20010082	20010202	-	5S	rRNA	rRNA	chr7	20010201	20010203	-	ENSMUST00000093641.1,ENSMUSG00000070150.1	n-R5s152	ENSMUSG00000070150.1	ENSMUST00000093641.1	rRNA	chr7:20010084-20010202
chr7	20598857	20599434	-	MT2B2	LTR	ERVL	chr7	20599020	20599022	-	ENSMUST00000207881.1,ENSMUSG00000109060.1	Gm4513	ENSMUSG00000109060.1	ENSMUST00000207881.1	protein_coding	chr7:20593051-20599021
chr7	20730395	20730960	-	MT2B2	LTR	ERVL	chr7	20730623	20730625	-	ENSMUST00000191073.2,ENSMUSG00000095190.3	Gm10668	ENSMUSG00000095190.3	ENSMUST00000191073.2	protein_coding	chr7:20724525-20730624
chr7	21190182	21190760	-	MT2B2	LTR	ERVL	chr7	21190422	21190424	-	ENSMUST00000185914.1,ENSMUSG00000101436.1	Gm5157	ENSMUSG00000101436.1	ENSMUST00000185914.1	protein_coding	chr7:21184317-21190423
chr7	21432504	21433082	-	MT2B2	LTR	ERVL	chr7	21432744	21432746	-	ENSMUST00000207192.1,ENSMUSG00000109516.1	Gm6882	ENSMUSG00000109516.1	ENSMUST00000207192.1	protein_coding	chr7:21425858-21432745
chr7	21921049	21921626	-	MT2B2	LTR	ERVL	chr7	21921290	21921292	-	ENSMUST00000186212.1,ENSMUSG00000095976.2	Gm5891	ENSMUSG00000095976.2	ENSMUST00000186212.1	protein_coding	chr7:21908665-21921291
chr7	22056076	22056641	-	MT2B2	LTR	ERVL	chr7	22056304	22056306	-	ENSMUST00000207633.1,ENSMUSG00000096283.2	Gm6176	ENSMUSG00000096283.2	ENSMUST00000207633.1	protein_coding	chr7:22050205-22056305
chr7	22587963	22588540	-	MT2B2	LTR	ERVL	chr7	22588126	22588128	-	ENSMUST00000208134.1,ENSMUSG00000109396.1	Gm4565	ENSMUSG00000109396.1	ENSMUST00000208134.1	protein_coding	chr7:22582158-22588127
chr7	22719481	22720046	-	MT2B2	LTR	ERVL	chr7	22719709	22719711	-	ENSMUST00000190554.1,ENSMUSG00000095363.2	Gm4567	ENSMUSG00000095363.2	ENSMUST00000190554.1	protein_coding	chr7:22713611-22719710
chr7	23144238	23144815	-	MT2B2	LTR	ERVL	chr7	23144479	23144481	-	ENSMUST00000186928.1,ENSMUSG00000095683.2	Gm10662	ENSMUSG00000095683.2	ENSMUST00000186928.1	protein_coding	chr7:23131854-23144480
chr7	23278671	23279237	-	MT2B2	LTR	ERVL	chr7	23278899	23278901	-	ENSMUST00000191169.1,ENSMUSG00000094682.2	Gm6902	ENSMUSG00000094682.2	ENSMUST00000191169.1	protein_coding	chr7:23272801-23278900
chr7	23406795	23407309	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	23406995	23406997	+	ENSMUST00000180171.1,ENSMUSG00000095946.1	Gm25196	ENSMUSG00000095946.1	ENSMUST00000180171.1	miRNA	chr7:23406996-23407105
chr7	23974369	23974714	-	RLTR10B	LTR	ERVK	chr7	23974614	23974616	+	ENSMUST00000228842.1,ENSMUSG00000097425.3	Vmn1r181	ENSMUSG00000097425.3	ENSMUST00000228842.1	protein_coding	chr7:23974615-23988139
chr7	23974369	23974714	-	RLTR10B	LTR	ERVK	chr7	23974614	23974616	+	ENSMUST00000227637.1,ENSMUSG00000097425.3	Vmn1r181	ENSMUSG00000097425.3	ENSMUST00000227637.1	protein_coding	chr7:23974615-23988139
chr7	23974369	23974714	-	RLTR10B	LTR	ERVK	chr7	23974614	23974616	+	ENSMUST00000228399.1,ENSMUSG00000097425.3	Vmn1r181	ENSMUSG00000097425.3	ENSMUST00000228399.1	protein_coding	chr7:23974615-23988139
chr7	24073116	24073488	-	L1VL2	LINE	L1	chr7	24073163	24073165	-	ENSMUST00000205855.1,ENSMUSG00000108613.1	Gm36694	ENSMUSG00000108613.1	ENSMUST00000205855.1	antisense	chr7:24054232-24073164
chr7	24081938	24082018	+	(TG)n	Simple_repeat	Simple_repeat	chr7	24081946	24081948	+	ENSMUST00000206184.1,ENSMUSG00000057101.8	Zfp180	ENSMUSG00000057101.8	ENSMUST00000206184.1	protein_coding	chr7:24081947-24104558
chr7	24081938	24082018	+	(TG)n	Simple_repeat	Simple_repeat	chr7	24081953	24081955	+	ENSMUST00000203854.2,ENSMUSG00000057101.8	Zfp180	ENSMUSG00000057101.8	ENSMUST00000203854.2	protein_coding	chr7:24081954-24107692
chr7	24097110	24097299	-	B4A	SINE	B4	chr7	24097265	24097267	+	ENSMUST00000206482.1,ENSMUSG00000057101.8	Zfp180	ENSMUSG00000057101.8	ENSMUST00000206482.1	protein_coding	chr7:24097266-24101526
chr7	24177301	24177463	-	MLTR11A	LTR	ERVK	chr7	24177360	24177362	+	ENSMUST00000086010.6,ENSMUSG00000068962.7	Zfp114	ENSMUSG00000068962.7	ENSMUST00000086010.6	protein_coding	chr7:24177361-24183188
chr7	24203575	24203997	-	MTC	LTR	ERVL-MaLR	chr7	24203582	24203584	-	ENSMUST00000056683.2,ENSMUSG00000087598.9	Zfp111	ENSMUSG00000087598.9	ENSMUST00000056683.2	protein_coding	chr7:24196877-24203583
chr7	24211133	24211654	-	RMER19A	LTR	ERVK	chr7	24211442	24211444	-	ENSMUST00000073833.13,ENSMUSG00000087598.9	Zfp111	ENSMUSG00000087598.9	ENSMUST00000073833.13	protein_coding	chr7:24198082-24211443
chr7	24211133	24211654	-	RMER19A	LTR	ERVK	chr7	24211442	24211444	-	ENSMUST00000142218.2,ENSMUSG00000087598.9	Zfp111	ENSMUSG00000087598.9	ENSMUST00000142218.2	protein_coding	chr7:24205741-24211443
chr7	24212963	24213546	+	RMER19A	LTR	ERVK	chr7	24213133	24213135	+	ENSMUST00000205272.1,ENSMUSG00000108361.1	Gm44796	ENSMUSG00000108361.1	ENSMUST00000205272.1	processed_transcript	chr7:24213134-24214385
chr7	24237174	24237275	+	RSINE1	SINE	B4	chr7	24237224	24237226	-	ENSMUST00000206960.1,ENSMUSG00000074283.5	Zfp109	ENSMUSG00000074283.5	ENSMUST00000206960.1	protein_coding	chr7:24227981-24237225
chr7	24257610	24257932	-	MTC	LTR	ERVL-MaLR	chr7	24257643	24257645	+	ENSMUST00000072713.6,ENSMUSG00000030486.9	Zfp108	ENSMUSG00000030486.9	ENSMUST00000072713.6	protein_coding	chr7:24257644-24261914
chr7	24295434	24295568	+	RMER15	LTR	ERVL	chr7	24295547	24295549	-	ENSMUST00000137342.1,ENSMUSG00000050605.17	Zfp61	ENSMUSG00000050605.17	ENSMUST00000137342.1	protein_coding	chr7:24293361-24295548
chr7	24299610	24299743	+	B3	SINE	B2	chr7	24299674	24299676	-	ENSMUST00000077780.13,ENSMUSG00000050605.17	Zfp61	ENSMUSG00000050605.17	ENSMUST00000077780.13	protein_coding	chr7:24291039-24299675
chr7	24299610	24299743	+	B3	SINE	B2	chr7	24299636	24299638	-	ENSMUST00000206535.1,ENSMUSG00000050605.17	Zfp61	ENSMUSG00000050605.17	ENSMUST00000206535.1	protein_coding	chr7:24298096-24299637
chr7	24309251	24309458	+	ID_B1	SINE	B4	chr7	24309395	24309397	-	ENSMUST00000146817.1,ENSMUSG00000074282.10	Zfp94	ENSMUSG00000074282.10	ENSMUST00000146817.1	protein_coding	chr7:24303626-24309396
chr7	24317831	24318381	+	RMER4B	LTR	ERVK	chr7	24318380	24318382	+	ENSMUST00000206811.1,ENSMUSG00000108567.1	Gm44513	ENSMUSG00000108567.1	ENSMUST00000206811.1	processed_pseudogene	chr7:24318381-24318819
chr7	24336336	24336484	+	B1_Mus1	SINE	Alu	chr7	24336464	24336466	-	ENSMUST00000157729.2,ENSMUSG00000088354.2	Gm27592	ENSMUSG00000088354.2	ENSMUST00000157729.2	miRNA	chr7:24336340-24336465
chr7	24481974	24482050	+	G-rich	Low_complexity	Low_complexity	chr7	24482022	24482024	+	ENSMUST00000068023.7,ENSMUSG00000054793.8	Cadm4	ENSMUSG00000054793.8	ENSMUST00000068023.7	protein_coding	chr7:24482023-24504539
chr7	24569633	24569776	-	B1_Mus2	SINE	Alu	chr7	24569701	24569703	+	ENSMUST00000205804.1,ENSMUSG00000051768.9	Xrcc1	ENSMUSG00000051768.9	ENSMUST00000205804.1	protein_coding	chr7:24569702-24570710
chr7	24569777	24569888	-	MER2	DNA	TcMar-Tigger	chr7	24569856	24569858	+	ENSMUST00000206429.1,ENSMUSG00000051768.9	Xrcc1	ENSMUSG00000051768.9	ENSMUST00000206429.1	protein_coding	chr7:24569857-24570926
chr7	24571671	24571773	+	PB1D10	SINE	Alu	chr7	24571713	24571715	+	ENSMUST00000205575.1,ENSMUSG00000051768.9	Xrcc1	ENSMUSG00000051768.9	ENSMUST00000205575.1	protein_coding	chr7:24571714-24573434
chr7	24637832	24637965	-	B1F1	SINE	Alu	chr7	24637915	24637917	-	ENSMUST00000180699.1,ENSMUSG00000097215.1	Gm26550	ENSMUSG00000097215.1	ENSMUST00000180699.1	antisense	chr7:24631145-24637916
chr7	24661188	24661328	+	RSINE1	SINE	B4	chr7	24661293	24661295	+	ENSMUST00000206756.1,ENSMUSG00000108470.1	Gm4598	ENSMUSG00000108470.1	ENSMUST00000206756.1	lincRNA	chr7:24661294-24663109
chr7	24724157	24724308	-	ID_B1	SINE	B4	chr7	24724289	24724291	-	ENSMUST00000081657.5,ENSMUSG00000058717.8	Gm4763	ENSMUSG00000058717.8	ENSMUST00000081657.5	protein_coding	chr7:24722494-24724290
chr7	24902807	24903003	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	24902911	24902913	+	ENSMUST00000117796.7,ENSMUSG00000040940.18	Arhgef1	ENSMUSG00000040940.18	ENSMUST00000117796.7	protein_coding	chr7:24902912-24926592
chr7	25059346	25059533	-	B2_Mm1a	SINE	B2	chr7	25059430	25059432	-	ENSMUST00000206132.1,ENSMUSG00000003378.9	Grik5	ENSMUSG00000003378.9	ENSMUST00000206132.1	protein_coding	chr7:25046202-25059431
chr7	25072217	25072380	+	G-rich	Low_complexity	Low_complexity	chr7	25072291	25072293	-	ENSMUST00000003468.9,ENSMUSG00000003378.9	Grik5	ENSMUSG00000003378.9	ENSMUST00000003468.9	protein_coding	chr7:25009849-25072292
chr7	25072217	25072380	+	G-rich	Low_complexity	Low_complexity	chr7	25072345	25072347	-	ENSMUST00000206134.1,ENSMUSG00000003378.9	Grik5	ENSMUSG00000003378.9	ENSMUST00000206134.1	protein_coding	chr7:25009849-25072346
chr7	25072217	25072380	+	G-rich	Low_complexity	Low_complexity	chr7	25072309	25072311	-	ENSMUST00000205993.1,ENSMUSG00000003378.9	Grik5	ENSMUSG00000003378.9	ENSMUST00000205993.1	protein_coding	chr7:25068564-25072310
chr7	25250621	25250748	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	25250729	25250731	-	ENSMUST00000116343.2,ENSMUSG00000040857.15	Erf	ENSMUSG00000040857.15	ENSMUST00000116343.2	protein_coding	chr7:25245447-25250730
chr7	25278402	25278426	+	GC_rich	Low_complexity	Low_complexity	chr7	25278421	25278423	+	ENSMUST00000169743.1,ENSMUSG00000005442.13	Cic	ENSMUSG00000005442.13	ENSMUST00000169743.1	protein_coding	chr7:25278422-25284969
chr7	25282156	25282253	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	25282178	25282180	+	ENSMUST00000163320.7,ENSMUSG00000005442.13	Cic	ENSMUSG00000005442.13	ENSMUST00000163320.7	protein_coding	chr7:25282179-25294145
chr7	25282156	25282253	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	25282178	25282180	+	ENSMUST00000005578.12,ENSMUSG00000005442.13	Cic	ENSMUSG00000005442.13	ENSMUST00000005578.12	protein_coding	chr7:25282179-25294148
chr7	25686979	25687017	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	25687001	25687003	+	ENSMUST00000002678.9,ENSMUSG00000002603.15	Tgfb1	ENSMUSG00000002603.15	ENSMUST00000002678.9	protein_coding	chr7:25687002-25705077
chr7	25741520	25741695	-	B3A	SINE	B2	chr7	25741576	25741578	-	ENSMUST00000206260.1,ENSMUSG00000040725.13	Hnrnpul1	ENSMUSG00000040725.13	ENSMUST00000206260.1	protein_coding	chr7:25739282-25741577
chr7	25815253	25815396	-	B1_Mur4	SINE	Alu	chr7	25815391	25815393	-	ENSMUST00000156714.1,ENSMUSG00000040703.11	Cyp2s1	ENSMUSG00000040703.11	ENSMUST00000156714.1	protein_coding	chr7:25809324-25815392
chr7	25860010	25860410	+	RLTR20B3	LTR	ERVK	chr7	25860139	25860141	+	ENSMUST00000206564.1,ENSMUSG00000108415.1	Gm30146	ENSMUSG00000108415.1	ENSMUST00000206564.1	lincRNA	chr7:25860140-25869883
chr7	25868944	25869048	+	HY1	scRNA	scRNA	chr7	25868944	25868946	+	ENSMUST00000175258.1,ENSMUSG00000092999.1	Gm23921	ENSMUSG00000092999.1	ENSMUST00000175258.1	misc_RNA	chr7:25868945-25869051
chr7	26007602	26012143	+	IAP1-MM_I-int	LTR	ERVK	chr7	26009888	26009890	+	ENSMUST00000206555.1,ENSMUSG00000108413.1	BC026762	ENSMUSG00000108413.1	ENSMUST00000206555.1	lincRNA	chr7:26009889-26012391
chr7	26100310	26101464	-	Lx4B	LINE	L1	chr7	26100315	26100317	-	ENSMUST00000206876.1,ENSMUSG00000108342.1	Gm29920	ENSMUSG00000108342.1	ENSMUST00000206876.1	processed_pseudogene	chr7:26099563-26100316
chr7	26530981	26531498	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	26531183	26531185	+	ENSMUST00000180343.1,ENSMUSG00000094866.1	Gm25947	ENSMUSG00000094866.1	ENSMUST00000180343.1	miRNA	chr7:26531184-26531293
chr7	26919339	26919443	+	B2_Mm2	SINE	B2	chr7	26919351	26919353	-	ENSMUST00000206607.1,ENSMUSG00000108731.1	Api5-ps	ENSMUSG00000108731.1	ENSMUST00000206607.1	processed_pseudogene	chr7:26918776-26919352
chr7	27205509	27205611	+	B1_Mur1	SINE	Alu	chr7	27205535	27205537	+	ENSMUST00000116883.1,ENSMUSG00000080533.1	Mir1191	ENSMUSG00000080533.1	ENSMUST00000116883.1	miRNA	chr7:27205536-27205655
chr7	27240289	27240416	+	ID_B1	SINE	B4	chr7	27240314	27240316	+	ENSMUST00000206312.1,ENSMUSG00000003762.13	Coq8b	ENSMUSG00000003762.13	ENSMUST00000206312.1	protein_coding	chr7:27240315-27243118
chr7	27333624	27333662	+	GC_rich	Low_complexity	Low_complexity	chr7	27333647	27333649	-	ENSMUST00000206413.1,ENSMUSG00000040488.17	Ltbp4	ENSMUSG00000040488.17	ENSMUST00000206413.1	protein_coding	chr7:27311560-27333648
chr7	27333662	27333689	+	(CCCG)n	Simple_repeat	Simple_repeat	chr7	27333662	27333664	-	ENSMUST00000121175.7,ENSMUSG00000040488.17	Ltbp4	ENSMUSG00000040488.17	ENSMUST00000121175.7	protein_coding	chr7:27305140-27333663
chr7	27347297	27347489	+	B3	SINE	B2	chr7	27347453	27347455	-	ENSMUST00000132046.1,ENSMUSG00000089832.8	Shkbp1	ENSMUSG00000089832.8	ENSMUST00000132046.1	protein_coding	chr7:27344979-27347454
chr7	27396553	27396579	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	27396552	27396554	-	ENSMUST00000108363.7,ENSMUSG00000011751.16	Sptbn4	ENSMUSG00000011751.16	ENSMUST00000108363.7	protein_coding	chr7:27356383-27396553
chr7	27446592	27446686	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	27446598	27446600	-	ENSMUST00000011895.13,ENSMUSG00000011751.16	Sptbn4	ENSMUSG00000011751.16	ENSMUST00000011895.13	protein_coding	chr7:27356383-27446599
chr7	27452338	27452460	-	B1_Mur4	SINE	Alu	chr7	27452417	27452419	+	ENSMUST00000108357.7,ENSMUSG00000040466.16	Blvrb	ENSMUSG00000040466.16	ENSMUST00000108357.7	protein_coding	chr7:27452418-27465984
chr7	27452338	27452460	-	B1_Mur4	SINE	Alu	chr7	27452443	27452445	+	ENSMUST00000153644.1,ENSMUSG00000040466.16	Blvrb	ENSMUSG00000040466.16	ENSMUST00000153644.1	protein_coding	chr7:27452444-27462695
chr7	27527040	27527081	+	(CA)n	Simple_repeat	Simple_repeat	chr7	27527058	27527060	+	ENSMUST00000037134.6,ENSMUSG00000040424.15	Hipk4	ENSMUSG00000040424.15	ENSMUST00000037134.6	protein_coding	chr7:27527059-27531170
chr7	27574379	27574483	+	PB1D10	SINE	Alu	chr7	27574466	27574468	+	ENSMUST00000186501.1,ENSMUSG00000049643.15	2310022A10Rik	ENSMUSG00000049643.15	ENSMUST00000186501.1	protein_coding	chr7:27574467-27580420
chr7	27677827	27678073	-	MTC	LTR	ERVL-MaLR	chr7	27677843	27677845	-	ENSMUST00000205388.1,ENSMUSG00000108520.1	Gm44684	ENSMUSG00000108520.1	ENSMUST00000205388.1	processed_transcript	chr7:27674659-27677844
chr7	27770498	27770620	+	MurSatRep1	Unknown	Unknown	chr7	27770504	27770506	+	ENSMUST00000208942.1,ENSMUSG00000109143.1	Gm10046	ENSMUSG00000109143.1	ENSMUST00000208942.1	transcribed_unprocessed_pseudogene	chr7:27770505-27770630
chr7	27857432	27857547	+	B1_Mur3	SINE	Alu	chr7	27857526	27857528	+	ENSMUST00000205715.1,ENSMUSG00000020420.8	Zfp607a	ENSMUSG00000020420.8	ENSMUST00000205715.1	protein_coding	chr7:27857527-27880482
chr7	28123253	28123359	+	U6	snRNA	snRNA	chr7	28123253	28123255	+	ENSMUST00000082859.1,ENSMUSG00000064793.1	Gm24356	ENSMUSG00000064793.1	ENSMUST00000082859.1	snRNA	chr7:28123254-28123359
chr7	28331425	28331490	+	CT-rich	Low_complexity	Low_complexity	chr7	28331453	28331455	-	ENSMUST00000208726.1,ENSMUSG00000003435.9	Supt5	ENSMUSG00000003435.9	ENSMUST00000208726.1	protein_coding	chr7:28326043-28331454
chr7	28363314	28363346	+	(A)n	Simple_repeat	Simple_repeat	chr7	28363340	28363342	-	ENSMUST00000129145.7,ENSMUSG00000037552.17	Plekhg2	ENSMUSG00000037552.17	ENSMUST00000129145.7	protein_coding	chr7:28359605-28363341
chr7	28380184	28380295	+	PB1D11	SINE	Alu	chr7	28380252	28380254	-	ENSMUST00000051241.6,ENSMUSG00000044786.6	Zfp36	ENSMUSG00000044786.6	ENSMUST00000051241.6	protein_coding	chr7:28376784-28380253
chr7	28394678	28394813	-	B1_Mur1	SINE	Alu	chr7	28394762	28394764	+	ENSMUST00000154823.1,ENSMUSG00000003437.14	Paf1	ENSMUSG00000003437.14	ENSMUST00000154823.1	protein_coding	chr7:28394763-28395799
chr7	28436136	28436232	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	28436190	28436192	-	ENSMUST00000208199.1,ENSMUSG00000109336.1	Samd4b	ENSMUSG00000109336.1	ENSMUST00000208199.1	protein_coding	chr7:28399522-28436191
chr7	28436136	28436232	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	28436226	28436228	-	ENSMUST00000207766.1,ENSMUSG00000109336.1	Samd4b	ENSMUSG00000109336.1	ENSMUST00000207766.1	protein_coding	chr7:28401461-28436227
chr7	28442969	28443170	+	MIRb	SINE	MIR	chr7	28443106	28443108	+	ENSMUST00000138741.1,ENSMUSG00000060791.15	Gmfg	ENSMUSG00000060791.15	ENSMUST00000138741.1	protein_coding	chr7:28443107-28448233
chr7	28451983	28452166	+	GC_rich	Low_complexity	Low_complexity	chr7	28452147	28452149	+	ENSMUST00000189877.6,ENSMUSG00000030600.15	Lrfn1	ENSMUSG00000030600.15	ENSMUST00000189877.6	protein_coding	chr7:28452148-28462132
chr7	28452227	28452271	+	(TG)n	Simple_repeat	Simple_repeat	chr7	28452237	28452239	+	ENSMUST00000191267.1,ENSMUSG00000030600.15	Lrfn1	ENSMUSG00000030600.15	ENSMUST00000191267.1	protein_coding	chr7:28452238-28460411
chr7	28492430	28492753	+	ORR1B1	LTR	ERVL-MaLR	chr7	28492549	28492551	+	ENSMUST00000190841.1,ENSMUSG00000099417.1	1700028B04Rik	ENSMUSG00000099417.1	ENSMUST00000190841.1	transcribed_processed_pseudogene	chr7:28492550-28497713
chr7	28598113	28598144	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	28598143	28598145	-	ENSMUST00000040531.8,ENSMUSG00000109336.1	Samd4b	ENSMUSG00000109336.1	ENSMUST00000040531.8	protein_coding	chr7:28399549-28598144
chr7	28631025	28631081	+	MIRc	SINE	MIR	chr7	28631066	28631068	-	ENSMUST00000040112.3,ENSMUSG00000037469.9	Acp7	ENSMUSG00000037469.9	ENSMUST00000040112.3	protein_coding	chr7:28607634-28631067
chr7	28640376	28640467	-	ID_B1	SINE	B4	chr7	28640442	28640444	+	ENSMUST00000207408.1,ENSMUSG00000108865.1	Gm44617	ENSMUSG00000108865.1	ENSMUST00000207408.1	processed_transcript	chr7:28640443-28644085
chr7	28642376	28642492	-	HAL1	LINE	L1	chr7	28642386	28642388	+	ENSMUST00000209122.1,ENSMUSG00000108865.1	Gm44617	ENSMUSG00000108865.1	ENSMUST00000209122.1	processed_transcript	chr7:28642387-28645671
chr7	28814817	28814844	+	(T)n	Simple_repeat	Simple_repeat	chr7	28814823	28814825	+	ENSMUST00000173818.7,ENSMUSG00000015165.16	Hnrnpl	ENSMUSG00000015165.16	ENSMUST00000173818.7	protein_coding	chr7:28814824-28818700
chr7	28919156	28919276	-	ID_B1	SINE	B4	chr7	28919220	28919222	-	ENSMUST00000140622.7,ENSMUSG00000054808.15	Actn4	ENSMUSG00000054808.15	ENSMUST00000140622.7	protein_coding	chr7:28907014-28919221
chr7	28943503	28943535	+	(CA)n	Simple_repeat	Simple_repeat	chr7	28943527	28943529	-	ENSMUST00000208229.1,ENSMUSG00000109314.1	Gm44699	ENSMUSG00000109314.1	ENSMUST00000208229.1	sense_intronic	chr7:28920951-28943528
chr7	28974817	28974850	+	(CCTG)n	Simple_repeat	Simple_repeat	chr7	28974835	28974837	-	ENSMUST00000208810.1,ENSMUSG00000053565.10	Eif3k	ENSMUSG00000053565.10	ENSMUST00000208810.1	protein_coding	chr7:28972433-28974836
chr7	29028785	29029168	+	RLTR12B	LTR	ERVK	chr7	29029022	29029024	+	ENSMUST00000207099.1,ENSMUSG00000109017.1	Gm38979	ENSMUSG00000109017.1	ENSMUST00000207099.1	antisense	chr7:29029023-29030250
chr7	29072067	29072115	+	(TC)n	Simple_repeat	Simple_repeat	chr7	29072076	29072078	-	ENSMUST00000207764.1,ENSMUSG00000030592.18	Ryr1	ENSMUSG00000030592.18	ENSMUST00000207764.1	protein_coding	chr7:29068999-29072077
chr7	29175762	29175898	+	ID_B1	SINE	B4	chr7	29175858	29175860	-	ENSMUST00000208592.1,ENSMUSG00000030591.17	Psmd8	ENSMUSG00000030591.17	ENSMUST00000208592.1	protein_coding	chr7:29174529-29175859
chr7	29176447	29176569	+	L2b	LINE	L2	chr7	29176464	29176466	-	ENSMUST00000208461.1,ENSMUSG00000030591.17	Psmd8	ENSMUSG00000030591.17	ENSMUST00000208461.1	protein_coding	chr7:29175448-29176465
chr7	29367799	29367984	+	MLT1K	LTR	ERVL-MaLR	chr7	29367817	29367819	-	ENSMUST00000182484.1,ENSMUSG00000030583.16	Sipa1l3	ENSMUSG00000030583.16	ENSMUST00000182484.1	protein_coding	chr7:29322122-29367818
chr7	29367799	29367984	+	MLT1K	LTR	ERVL-MaLR	chr7	29367825	29367827	-	ENSMUST00000183275.1,ENSMUSG00000030583.16	Sipa1l3	ENSMUSG00000030583.16	ENSMUST00000183275.1	protein_coding	chr7:29366704-29367826
chr7	29657158	29657276	-	5S	rRNA	rRNA	chr7	29657275	29657277	-	ENSMUST00000083451.1,ENSMUSG00000065385.1	n-R5s153	ENSMUSG00000065385.1	ENSMUST00000083451.1	rRNA	chr7:29657161-29657276
chr7	29657276	29657296	+	AT_rich	Low_complexity	Low_complexity	chr7	29657275	29657277	-	ENSMUST00000083451.1,ENSMUSG00000065385.1	n-R5s153	ENSMUSG00000065385.1	ENSMUST00000083451.1	rRNA	chr7:29657161-29657276
chr7	29737317	29737424	-	U6	snRNA	snRNA	chr7	29737423	29737425	-	ENSMUST00000083725.1,ENSMUSG00000065659.1	Gm23103	ENSMUSG00000065659.1	ENSMUST00000083725.1	snRNA	chr7:29737318-29737424
chr7	29737424	29738830	+	ORR1A0-int	LTR	ERVL-MaLR	chr7	29737423	29737425	-	ENSMUST00000083725.1,ENSMUSG00000065659.1	Gm23103	ENSMUSG00000065659.1	ENSMUST00000083725.1	snRNA	chr7:29737318-29737424
chr7	29772611	29773295	-	RLTR21	LTR	ERVK	chr7	29773293	29773295	+	ENSMUST00000158514.1,ENSMUSG00000089139.1	Mir1964	ENSMUSG00000089139.1	ENSMUST00000158514.1	miRNA	chr7:29773294-29773376
chr7	29856055	29856639	+	MERVL_2A-int	LTR	ERVL	chr7	29856054	29856056	-	ENSMUST00000097296.3,ENSMUSG00000090331.1	Gm17199	ENSMUSG00000090331.1	ENSMUST00000097296.3	processed_pseudogene	chr7:29855640-29856055
chr7	29898740	29898880	-	MurSatRep1	Unknown	Unknown	chr7	29898862	29898864	-	ENSMUST00000172448.1,ENSMUSG00000062040.14	Zfp27	ENSMUSG00000062040.14	ENSMUST00000172448.1	protein_coding	chr7:29894079-29898863
chr7	29906104	29906125	+	(AGGGGG)n	Simple_repeat	Simple_repeat	chr7	29906103	29906105	-	ENSMUST00000053521.14,ENSMUSG00000062040.14	Zfp27	ENSMUSG00000062040.14	ENSMUST00000053521.14	protein_coding	chr7:29893716-29906104
chr7	29926720	29927067	+	RLTR10	LTR	ERVK	chr7	29926977	29926979	+	ENSMUST00000208490.1,ENSMUSG00000109105.1	Gm44873	ENSMUSG00000109105.1	ENSMUST00000208490.1	TEC	chr7:29926978-29930405
chr7	29985240	29985339	-	L1MEi	LINE	L1	chr7	29985255	29985257	+	ENSMUST00000209185.1,ENSMUSG00000074221.12	Zfp568	ENSMUSG00000074221.12	ENSMUST00000209185.1	protein_coding	chr7:29985256-29989252
chr7	29985240	29985339	-	L1MEi	LINE	L1	chr7	29985298	29985300	+	ENSMUST00000146074.7,ENSMUSG00000074221.12	Zfp568	ENSMUSG00000074221.12	ENSMUST00000146074.7	protein_coding	chr7:29985299-30028282
chr7	30044628	30044738	+	PB1D11	SINE	Alu	chr7	30044733	30044735	-	ENSMUST00000077787.7,ENSMUSG00000053985.10	Zfp14	ENSMUSG00000053985.10	ENSMUST00000077787.7	protein_coding	chr7:30038053-30044734
chr7	30061183	30061375	+	B3	SINE	B2	chr7	30061306	30061308	-	ENSMUST00000182483.1,ENSMUSG00000098022.7	Zfp82	ENSMUSG00000098022.7	ENSMUST00000182483.1	protein_coding	chr7:30056036-30061307
chr7	30100832	30100977	-	B1_Mur4	SINE	Alu	chr7	30100934	30100936	-	ENSMUST00000116939.2,ENSMUSG00000093495.1	Gm23368	ENSMUSG00000093495.1	ENSMUST00000116939.2	miRNA	chr7:30100840-30100935
chr7	30193919	30194059	+	C-rich	Low_complexity	Low_complexity	chr7	30193953	30193955	+	ENSMUST00000208688.1,ENSMUSG00000097817.2	Gm26810	ENSMUSG00000097817.2	ENSMUST00000208688.1	antisense	chr7:30193954-30200805
chr7	30240831	30241111	+	L2b	LINE	L2	chr7	30240882	30240884	-	ENSMUST00000152543.1,ENSMUSG00000037020.16	Wdr62	ENSMUSG00000037020.16	ENSMUST00000152543.1	protein_coding	chr7:30240143-30240883
chr7	30317228	30317252	+	(TTA)n	Simple_repeat	Simple_repeat	chr7	30317239	30317241	+	ENSMUST00000176536.1,ENSMUSG00000019737.14	Syne4	ENSMUSG00000019737.14	ENSMUST00000176536.1	protein_coding	chr7:30317240-30319040
chr7	30317652	30317801	+	L2a	LINE	L2	chr7	30317765	30317767	+	ENSMUST00000177395.1,ENSMUSG00000019737.14	Syne4	ENSMUSG00000019737.14	ENSMUST00000177395.1	protein_coding	chr7:30317766-30319040
chr7	30323794	30323909	+	ID_B1	SINE	B4	chr7	30323894	30323896	-	ENSMUST00000098586.4,ENSMUSG00000074211.4	Sdhaf1	ENSMUSG00000074211.4	ENSMUST00000098586.4	protein_coding	chr7:30321406-30323895
chr7	30356735	30356924	-	U2	snRNA	snRNA	chr7	30356923	30356925	-	ENSMUST00000083048.1,ENSMUSG00000064982.1	Gm25259	ENSMUSG00000064982.1	ENSMUST00000083048.1	snRNA	chr7:30356732-30356924
chr7	30534056	30534229	+	L2b	LINE	L2	chr7	30534179	30534181	-	ENSMUST00000044338.4,ENSMUSG00000036882.7	Arhgap33	ENSMUSG00000036882.7	ENSMUST00000044338.4	protein_coding	chr7:30522226-30534180
chr7	30660832	30660911	+	PB1	SINE	Alu	chr7	30660854	30660856	-	ENSMUST00000142741.1,ENSMUSG00000078762.10	Haus5	ENSMUSG00000078762.10	ENSMUST00000142741.1	protein_coding	chr7:30658847-30660855
chr7	30878411	30878474	+	ID2	SINE	ID	chr7	30878448	30878450	-	ENSMUST00000189718.6,ENSMUSG00000030577.14	Cd22	ENSMUSG00000030577.14	ENSMUST00000189718.6	protein_coding	chr7:30865829-30878449
chr7	30884799	30885151	+	L1MDa	LINE	L1	chr7	30885030	30885032	+	ENSMUST00000189744.1,ENSMUSG00000100029.1	D7Ertd128e	ENSMUSG00000100029.1	ENSMUST00000189744.1	lincRNA	chr7:30885031-30886446
chr7	30956619	30956677	+	GC_rich	Low_complexity	Low_complexity	chr7	30956649	30956651	-	ENSMUST00000168731.1,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000168731.1	protein_coding	chr7:30955927-30956650
chr7	30956757	30956814	+	G-rich	Low_complexity	Low_complexity	chr7	30956802	30956804	-	ENSMUST00000058860.13,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000058860.13	protein_coding	chr7:30945248-30956803
chr7	30956757	30956814	+	G-rich	Low_complexity	Low_complexity	chr7	30956756	30956758	-	ENSMUST00000171338.7,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000171338.7	protein_coding	chr7:30946580-30956757
chr7	30956757	30956814	+	G-rich	Low_complexity	Low_complexity	chr7	30956756	30956758	-	ENSMUST00000162228.8,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000162228.8	protein_coding	chr7:30946580-30956757
chr7	30956757	30956814	+	G-rich	Low_complexity	Low_complexity	chr7	30956756	30956758	-	ENSMUST00000170699.7,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000170699.7	protein_coding	chr7:30946580-30956757
chr7	30956757	30956814	+	G-rich	Low_complexity	Low_complexity	chr7	30956756	30956758	-	ENSMUST00000172417.2,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000172417.2	protein_coding	chr7:30946580-30956757
chr7	30956757	30956814	+	G-rich	Low_complexity	Low_complexity	chr7	30956765	30956767	-	ENSMUST00000108119.9,ENSMUSG00000058239.13	Usf2	ENSMUSG00000058239.13	ENSMUST00000108119.9	protein_coding	chr7:30946580-30956766
chr7	31053532	31053640	+	GA-rich	Low_complexity	Low_complexity	chr7	31053531	31053533	-	ENSMUST00000205917.1,ENSMUSG00000036570.14	Fxyd1	ENSMUSG00000036570.14	ENSMUST00000205917.1	protein_coding	chr7:31051680-31053532
chr7	31111952	31112108	+	C-rich	Low_complexity	Low_complexity	chr7	31111957	31111959	-	ENSMUST00000164929.2,ENSMUSG00000001249.14	Hpn	ENSMUSG00000001249.14	ENSMUST00000164929.2	protein_coding	chr7:31109140-31111958
chr7	31151067	31151102	+	GC_rich	Low_complexity	Low_complexity	chr7	31151081	31151083	-	ENSMUST00000001280.13,ENSMUSG00000001248.15	Gramd1a	ENSMUSG00000001248.15	ENSMUST00000001280.13	protein_coding	chr7:31130127-31151082
chr7	32690049	32690482	+	MT2_Mm	LTR	ERVL	chr7	32690249	32690251	+	ENSMUST00000179182.1,ENSMUSG00000096274.1	Gm24766	ENSMUSG00000096274.1	ENSMUST00000179182.1	miRNA	chr7:32690250-32690370
chr7	32916945	32917378	+	MT2_Mm	LTR	ERVL	chr7	32917145	32917147	+	ENSMUST00000177758.1,ENSMUSG00000096142.1	Gm25817	ENSMUSG00000096142.1	ENSMUST00000177758.1	miRNA	chr7:32917146-32917266
chr7	33653169	33653495	-	IAPLTR3	LTR	ERVK	chr7	33653280	33653282	-	ENSMUST00000167012.7,ENSMUSG00000083896.8	Scgb2b23-ps	ENSMUSG00000083896.8	ENSMUST00000167012.7	transcribed_unprocessed_pseudogene	chr7:33625145-33653281
chr7	33653169	33653495	-	IAPLTR3	LTR	ERVK	chr7	33653439	33653441	+	ENSMUST00000151344.1,ENSMUSG00000085312.1	Gm12763	ENSMUSG00000085312.1	ENSMUST00000151344.1	lincRNA	chr7:33653440-33659268
chr7	33807916	33808428	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	33808116	33808118	+	ENSMUST00000179610.1,ENSMUSG00000094428.1	Gm26443	ENSMUSG00000094428.1	ENSMUST00000179610.1	miRNA	chr7:33808117-33808226
chr7	33937198	33937280	-	RLTR26D_MM	LTR	ERVK	chr7	33937260	33937262	+	ENSMUST00000117273.2,ENSMUSG00000083085.2	Gm12765	ENSMUSG00000083085.2	ENSMUST00000117273.2	unprocessed_pseudogene	chr7:33937261-33938237
chr7	33996933	33997015	-	RLTR26D_MM	LTR	ERVK	chr7	33996998	33997000	+	ENSMUST00000120134.1,ENSMUSG00000081962.1	Gm12773	ENSMUSG00000081962.1	ENSMUST00000120134.1	processed_pseudogene	chr7:33996999-33997585
chr7	34068438	34068792	-	RLTR19-int	LTR	ERVK	chr7	34068696	34068698	-	ENSMUST00000121496.2,ENSMUSG00000080947.2	Gm12779	ENSMUSG00000080947.2	ENSMUST00000121496.2	processed_pseudogene	chr7:34068555-34068697
chr7	34143205	34143320	-	Tigger8	DNA	TcMar-Tigger	chr7	34143268	34143270	-	ENSMUST00000124824.1,ENSMUSG00000052997.15	Uba2	ENSMUSG00000052997.15	ENSMUST00000124824.1	protein_coding	chr7:34141390-34143269
chr7	34164320	34164345	+	(A)n	Simple_repeat	Simple_repeat	chr7	34164340	34164342	-	ENSMUST00000206651.1,ENSMUSG00000052997.15	Uba2	ENSMUSG00000052997.15	ENSMUST00000206651.1	protein_coding	chr7:34162907-34164341
chr7	34169577	34169912	+	RLTR9A	LTR	ERVK	chr7	34169598	34169600	-	ENSMUST00000156253.1,ENSMUSG00000052997.15	Uba2	ENSMUSG00000052997.15	ENSMUST00000156253.1	protein_coding	chr7:34161573-34169599
chr7	34176724	34177692	+	ERVB4_2-I_MM-int	LTR	ERVK	chr7	34176757	34176759	+	ENSMUST00000121425.1,ENSMUSG00000081161.1	Gm12783	ENSMUSG00000081161.1	ENSMUST00000121425.1	unprocessed_pseudogene	chr7:34176758-34180004
chr7	34224750	34224894	-	B1_Mus2	SINE	Alu	chr7	34224754	34224756	+	ENSMUST00000180864.1,ENSMUSG00000097660.1	Gm26762	ENSMUSG00000097660.1	ENSMUST00000180864.1	lincRNA	chr7:34224755-34230236
chr7	34234417	34234549	+	B1F1	SINE	Alu	chr7	34234440	34234442	+	ENSMUST00000205940.1,ENSMUSG00000085105.2	Gm12758	ENSMUSG00000085105.2	ENSMUST00000205940.1	antisense	chr7:34234441-34235552
chr7	34365318	34365509	+	B2_Mm2	SINE	B2	chr7	34365330	34365332	-	ENSMUST00000205645.1,ENSMUSG00000108447.1	Gm44567	ENSMUSG00000108447.1	ENSMUST00000205645.1	TEC	chr7:34362701-34365331
chr7	34389656	34389697	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	34389686	34389688	-	ENSMUST00000085585.11,ENSMUSG00000066568.12	Lsm14a	ENSMUSG00000066568.12	ENSMUST00000085585.11	protein_coding	chr7:34344646-34389687
chr7	34438018	34438318	+	ORR1A2	LTR	ERVL-MaLR	chr7	34438136	34438138	+	ENSMUST00000140298.1,ENSMUSG00000085124.1	Gm12766	ENSMUSG00000085124.1	ENSMUST00000140298.1	lincRNA	chr7:34438137-34520885
chr7	34654385	34654581	+	C-rich	Low_complexity	Low_complexity	chr7	34654397	34654399	-	ENSMUST00000108069.7,ENSMUSG00000030499.9	Kctd15	ENSMUSG00000030499.9	ENSMUST00000108069.7	protein_coding	chr7:34639014-34654398
chr7	34654385	34654581	+	C-rich	Low_complexity	Low_complexity	chr7	34654388	34654390	-	ENSMUST00000206501.1,ENSMUSG00000030499.9	Kctd15	ENSMUSG00000030499.9	ENSMUST00000206501.1	protein_coding	chr7:34649987-34654389
chr7	35051415	35051575	-	B1_Mur4	SINE	Alu	chr7	35051504	35051506	-	ENSMUST00000205752.1,ENSMUSG00000056216.9	Cebpg	ENSMUSG00000056216.9	ENSMUST00000205752.1	protein_coding	chr7:35049896-35051505
chr7	35052420	35052537	-	B1_Mus1	SINE	Alu	chr7	35052536	35052538	-	ENSMUST00000205869.1,ENSMUSG00000108486.1	Gm44836	ENSMUSG00000108486.1	ENSMUST00000205869.1	sense_intronic	chr7:35051398-35052537
chr7	35053436	35053591	+	MER5A	DNA	hAT-Charlie	chr7	35053590	35053592	-	ENSMUST00000207013.1,ENSMUSG00000108753.1	Gm45094	ENSMUSG00000108753.1	ENSMUST00000207013.1	TEC	chr7:35052975-35053591
chr7	35066707	35066939	+	ORR1F	LTR	ERVL-MaLR	chr7	35066732	35066734	-	ENSMUST00000205833.1,ENSMUSG00000108739.1	Gm45096	ENSMUSG00000108739.1	ENSMUST00000205833.1	lincRNA	chr7:35057264-35066733
chr7	35081909	35081986	+	(AGCTG)n	Simple_repeat	Simple_repeat	chr7	35081909	35081911	+	ENSMUST00000175412.1,ENSMUSG00000093153.1	Gm25033	ENSMUSG00000093153.1	ENSMUST00000175412.1	miRNA	chr7:35081910-35081979
chr7	35101621	35101829	-	B3	SINE	B2	chr7	35101821	35101823	+	ENSMUST00000158174.1,ENSMUSG00000088799.1	Gm22535	ENSMUSG00000088799.1	ENSMUST00000158174.1	rRNA	chr7:35101822-35101940
chr7	35282492	35282538	+	AT_rich	Low_complexity	Low_complexity	chr7	35282492	35282494	+	ENSMUST00000206130.1,ENSMUSG00000108704.1	Gm44636	ENSMUSG00000108704.1	ENSMUST00000206130.1	TEC	chr7:35282493-35283247
chr7	35551945	35552085	+	B3A	SINE	B2	chr7	35552042	35552044	-	ENSMUST00000123469.1,ENSMUSG00000034875.5	Nudt19	ENSMUSG00000034875.5	ENSMUST00000123469.1	protein_coding	chr7:35547976-35552043
chr7	35723527	35723552	+	(A)n	Simple_repeat	Simple_repeat	chr7	35723551	35723553	-	ENSMUST00000127782.2,ENSMUSG00000043671.14	Dpy19l3	ENSMUSG00000043671.14	ENSMUST00000127782.2	protein_coding	chr7:35715968-35723552
chr7	35838248	35838269	+	AT_rich	Low_complexity	Low_complexity	chr7	35838259	35838261	+	ENSMUST00000187488.1,ENSMUSG00000100387.1	Gm28514	ENSMUSG00000100387.1	ENSMUST00000187488.1	lincRNA	chr7:35838260-35839570
chr7	36302446	36302841	+	MTA_Mm	LTR	ERVL-MaLR	chr7	36302514	36302516	+	ENSMUST00000175618.1,ENSMUSG00000093359.1	Gm23292	ENSMUSG00000093359.1	ENSMUST00000175618.1	miRNA	chr7:36302515-36302615
chr7	36568528	36568917	+	MTA_Mm	LTR	ERVL-MaLR	chr7	36568742	36568744	+	ENSMUST00000191121.1,ENSMUSG00000101965.1	Gm29129	ENSMUSG00000101965.1	ENSMUST00000191121.1	lincRNA	chr7:36568743-36573095
chr7	36698197	36698231	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	36698216	36698218	+	ENSMUST00000176413.1,ENSMUSG00000021217.7	Tshz3	ENSMUSG00000021217.7	ENSMUST00000176413.1	protein_coding	chr7:36698217-36702113
chr7	36721843	36721923	+	T-rich	Low_complexity	Low_complexity	chr7	36721845	36721847	+	ENSMUST00000195039.1,ENSMUSG00000102516.1	Gm38340	ENSMUSG00000102516.1	ENSMUST00000195039.1	TEC	chr7:36721846-36725853
chr7	37140487	37140835	-	MTEb	LTR	ERVL-MaLR	chr7	37140540	37140542	+	ENSMUST00000189179.1,ENSMUSG00000100905.1	Gm28075	ENSMUSG00000100905.1	ENSMUST00000189179.1	lincRNA	chr7:37140541-37141711
chr7	37517810	37517858	+	(GGA)n	Simple_repeat	Simple_repeat	chr7	37517853	37517855	-	ENSMUST00000205702.1,ENSMUSG00000108330.1	Gm44882	ENSMUSG00000108330.1	ENSMUST00000205702.1	TEC	chr7:37517053-37517854
chr7	37769938	37770006	+	CT-rich	Low_complexity	Low_complexity	chr7	37769961	37769963	-	ENSMUST00000056338.12,ENSMUSG00000043456.16	Zfp536	ENSMUSG00000043456.16	ENSMUST00000056338.12	protein_coding	chr7:37479109-37769962
chr7	37824241	37824347	-	U6	snRNA	snRNA	chr7	37824346	37824348	-	ENSMUST00000082657.1,ENSMUSG00000064591.1	Gm22302	ENSMUSG00000064591.1	ENSMUST00000082657.1	snRNA	chr7:37824242-37824347
chr7	37965744	37965862	+	MT2B	LTR	ERVL	chr7	37965776	37965778	-	ENSMUST00000205809.1,ENSMUSG00000030421.9	Uri1	ENSMUSG00000030421.9	ENSMUST00000205809.1	protein_coding	chr7:37965248-37965777
chr7	37965758	37965896	+	B1_Mur3	SINE	Alu	chr7	37965776	37965778	-	ENSMUST00000205809.1,ENSMUSG00000030421.9	Uri1	ENSMUSG00000030421.9	ENSMUST00000205809.1	protein_coding	chr7:37965248-37965777
chr7	38019525	38019567	+	GC_rich	Low_complexity	Low_complexity	chr7	38019541	38019543	-	ENSMUST00000085513.5,ENSMUSG00000030421.9	Uri1	ENSMUSG00000030421.9	ENSMUST00000085513.5	protein_coding	chr7:37959992-38019542
chr7	38019525	38019567	+	GC_rich	Low_complexity	Low_complexity	chr7	38019565	38019567	-	ENSMUST00000206327.1,ENSMUSG00000030421.9	Uri1	ENSMUSG00000030421.9	ENSMUST00000206327.1	protein_coding	chr7:37960642-38019566
chr7	38107512	38107613	+	GC_rich	Low_complexity	Low_complexity	chr7	38107533	38107535	-	ENSMUST00000108023.9,ENSMUSG00000002068.16	Ccne1	ENSMUSG00000002068.16	ENSMUST00000108023.9	protein_coding	chr7:38097984-38107534
chr7	38176393	38177416	-	MLTR25A	LTR	ERVK	chr7	38176670	38176672	-	ENSMUST00000158605.1,ENSMUSG00000089230.1	Gm22203	ENSMUSG00000089230.1	ENSMUST00000158605.1	snRNA	chr7:38176614-38176671
chr7	38186255	38186343	+	PB1D10	SINE	Alu	chr7	38186270	38186272	+	ENSMUST00000179503.2,ENSMUSG00000054676.15	1600014C10Rik	ENSMUSG00000054676.15	ENSMUST00000179503.2	protein_coding	chr7:38186271-38195266
chr7	38196404	38196582	+	L2a	LINE	L2	chr7	38196456	38196458	-	ENSMUST00000205412.1,ENSMUSG00000108332.1	D530033B14Rik	ENSMUSG00000108332.1	ENSMUST00000205412.1	antisense	chr7:38182759-38196457
chr7	38380348	38380455	+	U6	snRNA	snRNA	chr7	38380348	38380350	+	ENSMUST00000179674.1,ENSMUSG00000094848.1	Gm22638	ENSMUSG00000094848.1	ENSMUST00000179674.1	snRNA	chr7:38380349-38380455
chr7	38613148	38613252	+	U6	snRNA	snRNA	chr7	38613148	38613150	+	ENSMUST00000179790.1,ENSMUSG00000095537.1	Gm25286	ENSMUSG00000095537.1	ENSMUST00000179790.1	snRNA	chr7:38613149-38613253
chr7	38792637	38792744	+	U6	snRNA	snRNA	chr7	38792637	38792639	+	ENSMUST00000178103.1,ENSMUSG00000094419.1	Gm24797	ENSMUSG00000094419.1	ENSMUST00000178103.1	snRNA	chr7:38792638-38792744
chr7	38928774	38928878	+	U6	snRNA	snRNA	chr7	38928774	38928776	+	ENSMUST00000178612.1,ENSMUSG00000095053.1	Gm25671	ENSMUSG00000095053.1	ENSMUST00000178612.1	snRNA	chr7:38928775-38928879
chr7	39283975	39284079	+	U6	snRNA	snRNA	chr7	39283975	39283977	+	ENSMUST00000179167.1,ENSMUSG00000096181.1	Gm23307	ENSMUSG00000096181.1	ENSMUST00000179167.1	snRNA	chr7:39283976-39284080
chr7	39427530	39431995	-	L1Md_A	LINE	L1	chr7	39431506	39431508	+	ENSMUST00000183429.1,ENSMUSG00000098777.1	Gm27437	ENSMUSG00000098777.1	ENSMUST00000183429.1	miRNA	chr7:39431507-39431613
chr7	39630391	39630499	+	U6	snRNA	snRNA	chr7	39630391	39630393	+	ENSMUST00000093724.1,ENSMUSG00000070236.1	Gm26327	ENSMUSG00000070236.1	ENSMUST00000093724.1	snRNA	chr7:39630392-39630502
chr7	39797357	39797696	+	MTEa	LTR	ERVL-MaLR	chr7	39797685	39797687	-	ENSMUST00000209884.1,ENSMUSG00000110135.1	Gm45839	ENSMUSG00000110135.1	ENSMUST00000209884.1	lincRNA	chr7:39788086-39797686
chr7	39797702	39798184	+	MTEa-int	LTR	ERVL-MaLR	chr7	39797726	39797728	-	ENSMUST00000211456.1,ENSMUSG00000100431.2	4930558N11Rik	ENSMUSG00000100431.2	ENSMUST00000211456.1	lincRNA	chr7:39790967-39797727
chr7	39797702	39798184	+	MTEa-int	LTR	ERVL-MaLR	chr7	39797741	39797743	-	ENSMUST00000211512.1,ENSMUSG00000100431.2	4930558N11Rik	ENSMUSG00000100431.2	ENSMUST00000211512.1	lincRNA	chr7:39795200-39797742
chr7	39797702	39798184	+	MTEa-int	LTR	ERVL-MaLR	chr7	39797726	39797728	-	ENSMUST00000210899.1,ENSMUSG00000100431.2	4930558N11Rik	ENSMUSG00000100431.2	ENSMUST00000210899.1	lincRNA	chr7:39795403-39797727
chr7	39797702	39798184	+	MTEa-int	LTR	ERVL-MaLR	chr7	39797726	39797728	-	ENSMUST00000187626.1,ENSMUSG00000100431.2	4930558N11Rik	ENSMUSG00000100431.2	ENSMUST00000187626.1	lincRNA	chr7:39797154-39797727
chr7	39910496	39910622	-	BGLII_Mur	LTR	ERVK	chr7	39910609	39910611	-	ENSMUST00000210270.1,ENSMUSG00000109083.2	Gm44992	ENSMUSG00000109083.2	ENSMUST00000210270.1	lincRNA	chr7:39872087-39910610
chr7	39978154	39978480	+	RMER15	LTR	ERVL	chr7	39978232	39978234	-	ENSMUST00000211126.1,ENSMUSG00000109083.2	Gm44992	ENSMUSG00000109083.2	ENSMUST00000211126.1	lincRNA	chr7:39903769-39978233
chr7	39978154	39978480	+	RMER15	LTR	ERVL	chr7	39978262	39978264	-	ENSMUST00000210906.1,ENSMUSG00000109083.2	Gm44992	ENSMUSG00000109083.2	ENSMUST00000210906.1	lincRNA	chr7:39903770-39978263
chr7	39978154	39978480	+	RMER15	LTR	ERVL	chr7	39978284	39978286	-	ENSMUST00000209313.1,ENSMUSG00000109083.2	Gm44992	ENSMUSG00000109083.2	ENSMUST00000209313.1	lincRNA	chr7:39903772-39978285
chr7	39978154	39978480	+	RMER15	LTR	ERVL	chr7	39978285	39978287	-	ENSMUST00000210401.1,ENSMUSG00000109083.2	Gm44992	ENSMUSG00000109083.2	ENSMUST00000210401.1	lincRNA	chr7:39903773-39978286
chr7	39978154	39978480	+	RMER15	LTR	ERVL	chr7	39978318	39978320	-	ENSMUST00000210126.1,ENSMUSG00000109083.2	Gm44992	ENSMUSG00000109083.2	ENSMUST00000210126.1	lincRNA	chr7:39903776-39978319
chr7	40363449	40363645	+	7SK	RNA	RNA	chr7	40363449	40363451	+	ENSMUST00000157289.1,ENSMUSG00000087914.1	Gm24910	ENSMUSG00000087914.1	ENSMUST00000157289.1	misc_RNA	chr7:40363450-40363721
chr7	40469156	40469540	+	IAPEY_LTR	LTR	ERVK	chr7	40469239	40469241	-	ENSMUST00000187799.1,ENSMUSG00000100650.1	Gm28807	ENSMUSG00000100650.1	ENSMUST00000187799.1	lincRNA	chr7:40373302-40469240
chr7	40879601	40879738	+	U6	snRNA	snRNA	chr7	40879657	40879659	+	ENSMUST00000122524.1,ENSMUSG00000084473.1	Gm25784	ENSMUSG00000084473.1	ENSMUST00000122524.1	snRNA	chr7:40879658-40879738
chr7	40899307	40899354	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	40899331	40899333	+	ENSMUST00000206223.1,ENSMUSG00000039257.11	Vstm2b	ENSMUSG00000039257.11	ENSMUST00000206223.1	protein_coding	chr7:40899332-40902788
chr7	41234250	41234609	+	ORR1E	LTR	ERVL-MaLR	chr7	41234285	41234287	+	ENSMUST00000206905.1,ENSMUSG00000108779.1	Gm45691	ENSMUSG00000108779.1	ENSMUST00000206905.1	TEC	chr7:41234286-41235405
chr7	41245907	41247027	-	L1Md_F3	LINE	L1	chr7	41247020	41247022	+	ENSMUST00000056767.3,ENSMUSG00000049062.3	Gm9244	ENSMUSG00000049062.3	ENSMUST00000056767.3	unprocessed_pseudogene	chr7:41247021-41251605
chr7	41273851	41274400	-	RLTR6-int	LTR	ERV1	chr7	41274395	41274397	-	ENSMUST00000205447.1,ENSMUSG00000108340.1	Gm44520	ENSMUSG00000108340.1	ENSMUST00000205447.1	processed_pseudogene	chr7:41273595-41274396
chr7	41481526	41483560	-	MurSatRep1	Unknown	Unknown	chr7	41482565	41482567	-	ENSMUST00000205572.1,ENSMUSG00000074166.7	AW146154	ENSMUSG00000074166.7	ENSMUST00000205572.1	protein_coding	chr7:41481432-41482566
chr7	41647399	41647949	+	MurSatRep1	Unknown	Unknown	chr7	41647583	41647585	+	ENSMUST00000170770.1,ENSMUSG00000074165.10	Zfp788	ENSMUSG00000074165.10	ENSMUST00000170770.1	protein_coding	chr7:41647584-41650596
chr7	42604950	42605470	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	42605264	42605266	-	ENSMUST00000102225.1,ENSMUSG00000076180.1	Gm24938	ENSMUSG00000076180.1	ENSMUST00000102225.1	miRNA	chr7:42605156-42605265
chr7	42615349	42616533	-	MurSatRep1	Unknown	Unknown	chr7	42616358	42616360	-	ENSMUST00000187616.2,ENSMUSG00000074158.9	Zfp976	ENSMUSG00000074158.9	ENSMUST00000187616.2	protein_coding	chr7:42612504-42616359
chr7	42951109	42951740	+	Lx2	LINE	L1	chr7	42951723	42951725	+	ENSMUST00000117401.1,ENSMUSG00000080892.1	Gm9266	ENSMUSG00000080892.1	ENSMUST00000117401.1	processed_pseudogene	chr7:42951724-42952207
chr7	42958145	42958665	-	ERVB4_1-LTR_MM	LTR	ERVK	chr7	42958350	42958352	+	ENSMUST00000102235.1,ENSMUSG00000076190.1	Gm23256	ENSMUSG00000076190.1	ENSMUST00000102235.1	miRNA	chr7:42958351-42958460
chr7	43186995	43188183	+	MurSatRep1	Unknown	Unknown	chr7	43187169	43187171	+	ENSMUST00000072829.3,ENSMUSG00000064194.10	Zfp936	ENSMUSG00000064194.10	ENSMUST00000072829.3	protein_coding	chr7:43187170-43190481
chr7	43204154	43204666	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	43204351	43204353	+	ENSMUST00000103834.1,ENSMUSG00000077022.1	Gm22707	ENSMUSG00000077022.1	ENSMUST00000103834.1	miRNA	chr7:43204352-43204461
chr7	43223400	43224585	+	MurSatRep1	Unknown	Unknown	chr7	43223574	43223576	+	ENSMUST00000163106.1,ENSMUSG00000074887.4	EU599041	ENSMUSG00000074887.4	ENSMUST00000163106.1	lincRNA	chr7:43223575-43226333
chr7	43489972	43490157	+	G-rich	Low_complexity	Low_complexity	chr7	43490074	43490076	-	ENSMUST00000107974.2,ENSMUSG00000013367.5	Iglon5	ENSMUSG00000013367.5	ENSMUST00000107974.2	protein_coding	chr7:43472904-43490075
chr7	43544242	43544670	+	Lx4B	LINE	L1	chr7	43544427	43544429	-	ENSMUST00000039861.6,ENSMUSG00000004609.11	Cd33	ENSMUSG00000004609.11	ENSMUST00000039861.6	protein_coding	chr7:43528374-43544428
chr7	43692549	43692785	+	B4A	SINE	B4	chr7	43692643	43692645	+	ENSMUST00000205416.1,ENSMUSG00000108734.1	Gm44817	ENSMUSG00000108734.1	ENSMUST00000205416.1	TEC	chr7:43692644-43693096
chr7	43748617	43748886	+	B4	SINE	B4	chr7	43748792	43748794	-	ENSMUST00000181551.2,ENSMUSG00000097178.7	2310002F09Rik	ENSMUSG00000097178.7	ENSMUST00000181551.2	processed_transcript	chr7:43745466-43748793
chr7	43758281	43759297	-	MYSERV6-int	LTR	ERVK	chr7	43758583	43758585	-	ENSMUST00000206747.1,ENSMUSG00000097178.7	2310002F09Rik	ENSMUSG00000097178.7	ENSMUST00000206747.1	processed_transcript	chr7:43757980-43758584
chr7	43774477	43774641	-	MIRc	SINE	MIR	chr7	43774603	43774605	+	ENSMUST00000080211.11,ENSMUSG00000067616.11	Klk11	ENSMUSG00000067616.11	ENSMUST00000080211.11	protein_coding	chr7:43774604-43779263
chr7	43857369	43857498	+	RSINE1	SINE	B4	chr7	43857412	43857414	-	ENSMUST00000206293.1,ENSMUSG00000108781.1	Gm44707	ENSMUSG00000108781.1	ENSMUST00000206293.1	lincRNA	chr7:43856086-43857413
chr7	43917972	43918133	-	B4A	SINE	B4	chr7	43918056	43918058	+	ENSMUST00000206865.1,ENSMUSG00000108444.1	Klk2-ps	ENSMUSG00000108444.1	ENSMUST00000206865.1	transcribed_unprocessed_pseudogene	chr7:43918057-43921873
chr7	44156511	44161837	+	MERVL-int	LTR	ERVL	chr7	44157785	44157787	-	ENSMUST00000205793.1,ENSMUSG00000108774.1	Gm45136	ENSMUSG00000108774.1	ENSMUST00000205793.1	TEC	chr7:44156844-44157786
chr7	44249510	44249595	+	PB1D10	SINE	Alu	chr7	44249593	44249595	+	ENSMUST00000188382.1,ENSMUSG00000045411.16	2410002F23Rik	ENSMUSG00000045411.16	ENSMUST00000188382.1	protein_coding	chr7:44249594-44252315
chr7	44257334	44257474	-	MIR	SINE	MIR	chr7	44257377	44257379	-	ENSMUST00000107945.7,ENSMUSG00000012777.14	Acp4	ENSMUSG00000012777.14	ENSMUST00000107945.7	protein_coding	chr7:44252148-44257378
chr7	44257334	44257474	-	MIR	SINE	MIR	chr7	44257377	44257379	-	ENSMUST00000118216.7,ENSMUSG00000012777.14	Acp4	ENSMUSG00000012777.14	ENSMUST00000118216.7	protein_coding	chr7:44253085-44257378
chr7	44335997	44336041	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	44336015	44336017	+	ENSMUST00000134470.7,ENSMUSG00000038738.15	Shank1	ENSMUSG00000038738.15	ENSMUST00000134470.7	protein_coding	chr7:44336016-44343738
chr7	44484453	44484563	-	B4A	SINE	B4	chr7	44484516	44484518	+	ENSMUST00000206342.1,ENSMUSG00000108322.1	5430431A17Rik	ENSMUSG00000108322.1	ENSMUST00000206342.1	lincRNA	chr7:44484517-44485413
chr7	44584570	44584822	-	MTC	LTR	ERVL-MaLR	chr7	44584814	44584816	+	ENSMUST00000207302.1,ENSMUSG00000002204.9	Napsa	ENSMUSG00000002204.9	ENSMUST00000207302.1	protein_coding	chr7:44584815-44586610
chr7	44584795	44584860	-	U6	snRNA	snRNA	chr7	44584814	44584816	+	ENSMUST00000207302.1,ENSMUSG00000002204.9	Napsa	ENSMUSG00000002204.9	ENSMUST00000207302.1	protein_coding	chr7:44584815-44586610
chr7	44744045	44744432	+	RMER17C	LTR	ERVK	chr7	44744229	44744231	-	ENSMUST00000149011.8,ENSMUSG00000048012.19	Zfp473	ENSMUSG00000048012.19	ENSMUST00000149011.8	protein_coding	chr7:44731480-44744230
chr7	44750872	44751275	-	MTB	LTR	ERVL-MaLR	chr7	44751049	44751051	-	ENSMUST00000126366.2,ENSMUSG00000048012.19	Zfp473	ENSMUSG00000048012.19	ENSMUST00000126366.2	protein_coding	chr7:44734610-44751050
chr7	44756357	44757018	-	RMER19A	LTR	ERVK	chr7	44756985	44756987	+	ENSMUST00000208083.1,ENSMUSG00000002205.16	Vrk3	ENSMUSG00000002205.16	ENSMUST00000208083.1	protein_coding	chr7:44756986-44761637
chr7	44892370	44892407	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	44892390	44892392	-	ENSMUST00000208253.1,ENSMUSG00000002968.9	Med25	ENSMUSG00000002968.9	ENSMUST00000208253.1	protein_coding	chr7:44876765-44892391
chr7	44892370	44892407	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	44892406	44892408	-	ENSMUST00000207654.1,ENSMUSG00000002968.9	Med25	ENSMUSG00000002968.9	ENSMUST00000207654.1	protein_coding	chr7:44881028-44892407
chr7	44892370	44892407	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	44892400	44892402	-	ENSMUST00000208556.1,ENSMUSG00000002968.9	Med25	ENSMUSG00000002968.9	ENSMUST00000208556.1	protein_coding	chr7:44885176-44892401
chr7	44898131	44898228	+	PB1D11	SINE	Alu	chr7	44898180	44898182	+	ENSMUST00000207426.1,ENSMUSG00000011658.16	Fuz	ENSMUSG00000011658.16	ENSMUST00000207426.1	protein_coding	chr7:44898181-44902421
chr7	44916651	44916770	-	B2_Mm1t	SINE	B2	chr7	44916733	44916735	-	ENSMUST00000208285.1,ENSMUSG00000060279.14	Ap2a1	ENSMUSG00000060279.14	ENSMUST00000208285.1	protein_coding	chr7:44916250-44916734
chr7	44966037	44966234	+	B3	SINE	B2	chr7	44966186	44966188	-	ENSMUST00000212890.1,ENSMUSG00000007783.10	Cpt1c	ENSMUSG00000007783.10	ENSMUST00000212890.1	protein_coding	chr7:44960377-44966187
chr7	44967723	44967857	+	B4	SINE	B4	chr7	44967730	44967732	-	ENSMUST00000211901.1,ENSMUSG00000007783.10	Cpt1c	ENSMUSG00000007783.10	ENSMUST00000211901.1	protein_coding	chr7:44959372-44967731
chr7	45001332	45001433	-	PB1D10	SINE	Alu	chr7	45001386	45001388	+	ENSMUST00000208906.1,ENSMUSG00000003184.15	Irf3	ENSMUSG00000003184.15	ENSMUST00000208906.1	protein_coding	chr7:45001387-45002390
chr7	45016107	45016138	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	45016130	45016132	-	ENSMUST00000210056.1,ENSMUSG00000038406.17	Scaf1	ENSMUSG00000038406.17	ENSMUST00000210056.1	protein_coding	chr7:45010260-45016131
chr7	45019414	45019476	+	G-rich	Low_complexity	Low_complexity	chr7	45019469	45019471	+	ENSMUST00000210895.1,ENSMUSG00000038387.9	Rras	ENSMUSG00000038387.9	ENSMUST00000210895.1	protein_coding	chr7:45019470-45020405
chr7	45061670	45061697	+	(GGAGA)n	Simple_repeat	Simple_repeat	chr7	45061675	45061677	-	ENSMUST00000210493.1,ENSMUSG00000007837.11	Prrg2	ENSMUSG00000007837.11	ENSMUST00000210493.1	protein_coding	chr7:45054557-45061676
chr7	45126498	45126564	-	MIRb	SINE	MIR	chr7	45126536	45126538	-	ENSMUST00000210931.2,ENSMUSG00000074129.14	Rpl13a	ENSMUSG00000074129.14	ENSMUST00000210931.2	protein_coding	chr7:45125665-45126537
chr7	45132540	45132684	+	B1_Mur3	SINE	Alu	chr7	45132606	45132608	-	ENSMUST00000210083.1,ENSMUSG00000110206.1	Flt3l	ENSMUSG00000110206.1	ENSMUST00000210083.1	protein_coding	chr7:45131899-45132607
chr7	45149047	45149270	-	B3	SINE	B2	chr7	45149178	45149180	-	ENSMUST00000209755.1,ENSMUSG00000007833.15	Aldh16a1	ENSMUSG00000007833.15	ENSMUST00000209755.1	protein_coding	chr7:45147883-45149179
chr7	45163980	45164050	+	GC_rich	Low_complexity	Low_complexity	chr7	45164023	45164025	+	ENSMUST00000209634.1,ENSMUSG00000070570.5	Slc17a7	ENSMUSG00000070570.5	ENSMUST00000209634.1	protein_coding	chr7:45164024-45175087
chr7	45311461	45311603	+	B1_Mus1	SINE	Alu	chr7	45311567	45311569	-	ENSMUST00000209239.1,ENSMUSG00000038260.10	Trpm4	ENSMUSG00000038260.10	ENSMUST00000209239.1	protein_coding	chr7:45306623-45311568
chr7	45381311	45381352	+	T-rich	Low_complexity	Low_complexity	chr7	45381316	45381318	-	ENSMUST00000210661.1,ENSMUSG00000063511.11	Snrnp70	ENSMUSG00000063511.11	ENSMUST00000210661.1	protein_coding	chr7:45380602-45381317
chr7	45388419	45388571	+	B2_Mm2	SINE	B2	chr7	45388530	45388532	+	ENSMUST00000122570.1,ENSMUSG00000084519.1	Gm22478	ENSMUSG00000084519.1	ENSMUST00000122570.1	snoRNA	chr7:45388531-45388684
chr7	45392683	45392800	+	B1_Mus1	SINE	Alu	chr7	45392777	45392779	-	ENSMUST00000210970.1,ENSMUSG00000063511.11	Snrnp70	ENSMUSG00000063511.11	ENSMUST00000210970.1	protein_coding	chr7:45387434-45392778
chr7	45451014	45451202	-	B2_Mm2	SINE	B2	chr7	45451024	45451026	+	ENSMUST00000209230.1,ENSMUSG00000003865.16	Gys1	ENSMUSG00000003865.16	ENSMUST00000209230.1	protein_coding	chr7:45451025-45452116
chr7	45458751	45458866	+	B1_Mur1	SINE	Alu	chr7	45458798	45458800	-	ENSMUST00000211694.1,ENSMUSG00000050708.16	Ftl1	ENSMUSG00000050708.16	ENSMUST00000211694.1	protein_coding	chr7:45457945-45458799
chr7	45479930	45479990	+	(CA)n	Simple_repeat	Simple_repeat	chr7	45479930	45479932	-	ENSMUST00000209450.1,ENSMUSG00000011382.8	Dhdh	ENSMUSG00000011382.8	ENSMUST00000209450.1	protein_coding	chr7:45475630-45479931
chr7	45487035	45487513	+	RMER4B	LTR	ERVK	chr7	45487401	45487403	-	ENSMUST00000210440.1,ENSMUSG00000011382.8	Dhdh	ENSMUSG00000011382.8	ENSMUST00000210440.1	protein_coding	chr7:45485478-45487402
chr7	45529808	45530057	-	IMPB_01	Satellite	Satellite	chr7	45529992	45529994	+	ENSMUST00000211797.1,ENSMUSG00000040428.19	Plekha4	ENSMUSG00000040428.19	ENSMUST00000211797.1	protein_coding	chr7:45529993-45554229
chr7	45529808	45530057	-	IMPB_01	Satellite	Satellite	chr7	45530039	45530041	+	ENSMUST00000210480.1,ENSMUSG00000040428.19	Plekha4	ENSMUSG00000040428.19	ENSMUST00000210480.1	protein_coding	chr7:45530040-45532342
chr7	45551491	45551629	-	B1_Mus2	SINE	Alu	chr7	45551614	45551616	-	ENSMUST00000210460.1,ENSMUSG00000110144.1	Gm45564	ENSMUSG00000110144.1	ENSMUST00000210460.1	antisense	chr7:45550534-45551615
chr7	45552545	45552718	+	ID_B1	SINE	B4	chr7	45552689	45552691	+	ENSMUST00000211106.1,ENSMUSG00000040428.19	Plekha4	ENSMUSG00000040428.19	ENSMUST00000211106.1	protein_coding	chr7:45552690-45554229
chr7	45570815	45571028	-	LTR65	LTR	ERV1	chr7	45570995	45570997	+	ENSMUST00000209204.1,ENSMUSG00000030826.19	Bcat2	ENSMUSG00000030826.19	ENSMUST00000209204.1	protein_coding	chr7:45570996-45589710
chr7	45572852	45572969	-	PB1D9	SINE	Alu	chr7	45572868	45572870	+	ENSMUST00000211173.1,ENSMUSG00000030826.19	Bcat2	ENSMUSG00000030826.19	ENSMUST00000211173.1	protein_coding	chr7:45572869-45589710
chr7	45624383	45624484	+	PB1D10	SINE	Alu	chr7	45624392	45624394	+	ENSMUST00000209590.1,ENSMUSG00000064158.6	Izumo1	ENSMUSG00000064158.6	ENSMUST00000209590.1	protein_coding	chr7:45624393-45628823
chr7	45699786	45699965	+	GA-rich	Low_complexity	Low_complexity	chr7	45699842	45699844	+	ENSMUST00000003360.9,ENSMUSG00000003273.14	Car11	ENSMUSG00000003273.14	ENSMUST00000003360.9	protein_coding	chr7:45699843-45704682
chr7	45785310	45785420	+	C-rich	Low_complexity	Low_complexity	chr7	45785379	45785381	+	ENSMUST00000233503.1,ENSMUSG00000062044.16	Lmtk3	ENSMUSG00000062044.16	ENSMUST00000233503.1	protein_coding	chr7:45785380-45804144
chr7	45785310	45785420	+	C-rich	Low_complexity	Low_complexity	chr7	45785379	45785381	+	ENSMUST00000120005.9,ENSMUSG00000062044.16	Lmtk3	ENSMUSG00000062044.16	ENSMUST00000120005.9	protein_coding	chr7:45785380-45804144
chr7	45785310	45785420	+	C-rich	Low_complexity	Low_complexity	chr7	45785386	45785388	+	ENSMUST00000211609.1,ENSMUSG00000062044.16	Lmtk3	ENSMUSG00000062044.16	ENSMUST00000211609.1	protein_coding	chr7:45785387-45787948
chr7	45870428	45870470	+	(CA)n	Simple_repeat	Simple_repeat	chr7	45870428	45870430	-	ENSMUST00000211713.1,ENSMUSG00000002771.12	Grin2d	ENSMUSG00000002771.12	ENSMUST00000211713.1	protein_coding	chr7:45832253-45870429
chr7	45875555	45875631	-	U4	snRNA	snRNA	chr7	45875630	45875632	-	ENSMUST00000157930.1,ENSMUSG00000088555.1	Gm22098	ENSMUSG00000088555.1	ENSMUST00000157930.1	snRNA	chr7:45875547-45875631
chr7	45878133	45879266	-	ORR1A3-int	LTR	ERVL-MaLR	chr7	45878377	45878379	-	ENSMUST00000211250.1,ENSMUSG00000002771.12	Grin2d	ENSMUSG00000002771.12	ENSMUST00000211250.1	protein_coding	chr7:45866377-45878378
chr7	45908656	45909268	-	MT2A	LTR	ERVL	chr7	45908854	45908856	+	ENSMUST00000210574.1,ENSMUSG00000002781.19	Tmem143	ENSMUSG00000002781.19	ENSMUST00000210574.1	protein_coding	chr7:45908855-45909459
chr7	45921294	45921413	+	C-rich	Low_complexity	Low_complexity	chr7	45921403	45921405	-	ENSMUST00000038876.12,ENSMUSG00000040212.12	Emp3	ENSMUSG00000040212.12	ENSMUST00000038876.12	protein_coding	chr7:45918023-45921404
chr7	45921294	45921413	+	C-rich	Low_complexity	Low_complexity	chr7	45921301	45921303	-	ENSMUST00000210939.1,ENSMUSG00000040212.12	Emp3	ENSMUSG00000040212.12	ENSMUST00000210939.1	protein_coding	chr7:45918161-45921302
chr7	45972403	45972696	+	RLTR23	LTR	ERV1	chr7	45972411	45972413	+	ENSMUST00000210043.1,ENSMUSG00000109702.1	Gm45674	ENSMUSG00000109702.1	ENSMUST00000210043.1	processed_pseudogene	chr7:45972412-45973990
chr7	46082354	46082691	-	MLT1A0	LTR	ERVL-MaLR	chr7	46082644	46082646	+	ENSMUST00000182305.1,ENSMUSG00000030835.6	Nomo1	ENSMUSG00000030835.6	ENSMUST00000182305.1	protein_coding	chr7:46082645-46083804
chr7	46180031	46180064	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	46180032	46180034	-	ENSMUST00000210986.1,ENSMUSG00000040136.10	Abcc8	ENSMUSG00000040136.10	ENSMUST00000210986.1	protein_coding	chr7:46150596-46180033
chr7	46450412	46450519	+	U6	snRNA	snRNA	chr7	46450412	46450414	+	ENSMUST00000179018.1,ENSMUSG00000094229.1	Gm22969	ENSMUSG00000094229.1	ENSMUST00000179018.1	snRNA	chr7:46450413-46450519
chr7	46635794	46636137	-	MTD	LTR	ERVL-MaLR	chr7	46635946	46635948	-	ENSMUST00000125825.7,ENSMUSG00000030839.12	Sergef	ENSMUSG00000030839.12	ENSMUST00000125825.7	protein_coding	chr7:46632660-46635947
chr7	46651350	46651496	-	B1_Mus2	SINE	Alu	chr7	46651418	46651420	-	ENSMUST00000110264.2,ENSMUSG00000040046.14	Tph1	ENSMUSG00000040046.14	ENSMUST00000110264.2	protein_coding	chr7:46649741-46651419
chr7	46672469	46672569	-	PB1D11	SINE	Alu	chr7	46672536	46672538	-	ENSMUST00000049298.14,ENSMUSG00000040046.14	Tph1	ENSMUSG00000040046.14	ENSMUST00000049298.14	protein_coding	chr7:46644641-46672537
chr7	46685214	46685396	+	B3	SINE	B2	chr7	46685382	46685384	-	ENSMUST00000209629.1,ENSMUSG00000110010.1	Gm45629	ENSMUSG00000110010.1	ENSMUST00000209629.1	TEC	chr7:46682838-46685383
chr7	46785520	46785614	-	ID_B1	SINE	B4	chr7	46785545	46785547	-	ENSMUST00000211528.1,ENSMUSG00000110087.1	Gm45309	ENSMUSG00000110087.1	ENSMUST00000211528.1	sense_intronic	chr7:46784746-46785546
chr7	46808275	46808470	-	B2_Mm1a	SINE	B2	chr7	46808451	46808453	+	ENSMUST00000144708.1,ENSMUSG00000006599.13	Gtf2h1	ENSMUSG00000006599.13	ENSMUST00000144708.1	protein_coding	chr7:46808452-46815418
chr7	46861383	46861413	+	(G)n	Simple_repeat	Simple_repeat	chr7	46861406	46861408	+	ENSMUST00000126004.2,ENSMUSG00000030851.15	Ldhc	ENSMUSG00000030851.15	ENSMUST00000126004.2	protein_coding	chr7:46861407-46875793
chr7	46919929	46919952	+	GC_rich	Low_complexity	Low_complexity	chr7	46919943	46919945	-	ENSMUST00000211076.1,ENSMUSG00000014402.15	Tsg101	ENSMUSG00000014402.15	ENSMUST00000211076.1	protein_coding	chr7:46892497-46919944
chr7	46919929	46919952	+	GC_rich	Low_complexity	Low_complexity	chr7	46919936	46919938	-	ENSMUST00000143413.2,ENSMUSG00000014402.15	Tsg101	ENSMUSG00000014402.15	ENSMUST00000143413.2	protein_coding	chr7:46907051-46919937
chr7	46929393	46929427	+	B3	SINE	B2	chr7	46929423	46929425	-	ENSMUST00000208344.1,ENSMUSG00000109231.1	Gm45737	ENSMUSG00000109231.1	ENSMUST00000208344.1	TEC	chr7:46927813-46929424
chr7	46956013	46956043	+	(A)n	Simple_repeat	Simple_repeat	chr7	46956036	46956038	-	ENSMUST00000207738.1,ENSMUSG00000043262.16	Uevld	ENSMUSG00000043262.16	ENSMUST00000207738.1	protein_coding	chr7:46946001-46956037
chr7	46975060	46975245	+	B3	SINE	B2	chr7	46975175	46975177	-	ENSMUST00000209331.1,ENSMUSG00000110001.1	C86187	ENSMUSG00000110001.1	ENSMUST00000209331.1	lincRNA	chr7:46968494-46975176
chr7	46975810	46975941	+	MTC-int	LTR	ERVL-MaLR	chr7	46975910	46975912	-	ENSMUST00000209497.1,ENSMUSG00000110001.1	C86187	ENSMUSG00000110001.1	ENSMUST00000209497.1	lincRNA	chr7:46967711-46975911
chr7	46975810	46975941	+	MTC-int	LTR	ERVL-MaLR	chr7	46975910	46975912	-	ENSMUST00000210486.1,ENSMUSG00000110001.1	C86187	ENSMUSG00000110001.1	ENSMUST00000210486.1	lincRNA	chr7:46967747-46975911
chr7	47133377	47133856	+	L2a	LINE	L2	chr7	47133683	47133685	-	ENSMUST00000102626.9,ENSMUSG00000030854.17	Ptpn5	ENSMUSG00000030854.17	ENSMUST00000102626.9	protein_coding	chr7:47077795-47133684
chr7	47133377	47133856	+	L2a	LINE	L2	chr7	47133436	47133438	-	ENSMUST00000207172.1,ENSMUSG00000030854.17	Ptpn5	ENSMUSG00000030854.17	ENSMUST00000207172.1	protein_coding	chr7:47082454-47133437
chr7	47133377	47133856	+	L2a	LINE	L2	chr7	47133415	47133417	-	ENSMUST00000209179.1,ENSMUSG00000030854.17	Ptpn5	ENSMUSG00000030854.17	ENSMUST00000209179.1	protein_coding	chr7:47112719-47133416
chr7	47133377	47133856	+	L2a	LINE	L2	chr7	47133576	47133578	-	ENSMUST00000209184.1,ENSMUSG00000030854.17	Ptpn5	ENSMUSG00000030854.17	ENSMUST00000209184.1	protein_coding	chr7:47112737-47133577
chr7	47133377	47133856	+	L2a	LINE	L2	chr7	47133575	47133577	-	ENSMUST00000209057.1,ENSMUSG00000030854.17	Ptpn5	ENSMUSG00000030854.17	ENSMUST00000209057.1	protein_coding	chr7:47132708-47133576
chr7	47413834	47413940	+	U6	snRNA	snRNA	chr7	47413833	47413835	+	ENSMUST00000101903.1,ENSMUSG00000095085.1	Gm25326	ENSMUSG00000095085.1	ENSMUST00000101903.1	snRNA	chr7:47413834-47413940
chr7	47752520	47753036	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	47752721	47752723	+	ENSMUST00000103922.1,ENSMUSG00000077110.1	Gm22427	ENSMUSG00000077110.1	ENSMUST00000103922.1	miRNA	chr7:47752722-47752831
chr7	47982002	47982871	-	Lx	LINE	L1	chr7	47982094	47982096	-	ENSMUST00000087092.3,ENSMUSG00000067173.3	Mrgpra4	ENSMUSG00000067173.3	ENSMUST00000087092.3	protein_coding	chr7:47980837-47982095
chr7	48492913	48498148	+	Lx5	LINE	L1	chr7	48496124	48496126	-	ENSMUST00000186394.1,ENSMUSG00000074109.4	Mrgprx2	ENSMUSG00000074109.4	ENSMUST00000186394.1	protein_coding	chr7:48480626-48496125
chr7	48875237	48875351	+	PB1D10	SINE	Alu	chr7	48875250	48875252	-	ENSMUST00000151139.1,ENSMUSG00000046179.17	E2f8	ENSMUSG00000046179.17	ENSMUST00000151139.1	protein_coding	chr7:48872107-48875251
chr7	48909862	48910215	-	MTEa	LTR	ERVL-MaLR	chr7	48910061	48910063	-	ENSMUST00000209439.1,ENSMUSG00000110093.1	Gm45282	ENSMUSG00000110093.1	ENSMUST00000209439.1	lincRNA	chr7:48893685-48910062
chr7	49195411	49195599	+	MIR	SINE	MIR	chr7	49195540	49195542	+	ENSMUST00000195677.1,ENSMUSG00000103834.1	Gm37613	ENSMUSG00000103834.1	ENSMUST00000195677.1	TEC	chr7:49195541-49199120
chr7	49346072	49346268	+	B2_Mm1t	SINE	B2	chr7	49346093	49346095	+	ENSMUST00000208060.1,ENSMUSG00000109051.1	Gm44913	ENSMUSG00000109051.1	ENSMUST00000208060.1	TEC	chr7:49346094-49349083
chr7	49364577	49364767	-	B4A	SINE	B4	chr7	49364720	49364722	+	ENSMUST00000064383.6,ENSMUSG00000052512.17	Nav2	ENSMUSG00000052512.17	ENSMUST00000064383.6	protein_coding	chr7:49364721-49454642
chr7	49778520	49778551	+	GC_rich	Low_complexity	Low_complexity	chr7	49778543	49778545	+	ENSMUST00000145666.1,ENSMUSG00000030505.17	Prmt3	ENSMUSG00000030505.17	ENSMUST00000145666.1	protein_coding	chr7:49778544-49787314
chr7	50575730	50575912	+	MLT1J1	LTR	ERVL-MaLR	chr7	50575883	50575885	-	ENSMUST00000134584.1,ENSMUSG00000085265.1	Nell1os	ENSMUSG00000085265.1	ENSMUST00000134584.1	antisense	chr7:50517309-50575884
chr7	51631724	51631786	+	RLTR20A4	LTR	ERVK	chr7	51631724	51631726	+	ENSMUST00000208673.1,ENSMUSG00000109437.1	Gm45072	ENSMUSG00000109437.1	ENSMUST00000208673.1	TEC	chr7:51631725-51632653
chr7	51772669	51772754	-	L3	LINE	CR1	chr7	51772725	51772727	-	ENSMUST00000188146.1,ENSMUSG00000102124.1	Gm29296	ENSMUSG00000102124.1	ENSMUST00000188146.1	lincRNA	chr7:51750796-51772726
chr7	52219815	52219965	-	Lx5c	LINE	L1	chr7	52219959	52219961	+	ENSMUST00000209088.1,ENSMUSG00000109026.1	Gm44683	ENSMUSG00000109026.1	ENSMUST00000209088.1	processed_pseudogene	chr7:52219960-52220443
chr7	52927069	52927177	+	U6	snRNA	snRNA	chr7	52927069	52927071	+	ENSMUST00000093693.1,ENSMUSG00000070203.1	Gm22444	ENSMUSG00000070203.1	ENSMUST00000093693.1	snRNA	chr7:52927070-52927177
chr7	53995600	53995962	-	L1_Mur3	LINE	L1	chr7	53995941	53995943	+	ENSMUST00000208501.1,ENSMUSG00000109312.1	Gm44682	ENSMUSG00000109312.1	ENSMUST00000208501.1	TEC	chr7:53995942-53998555
chr7	54213296	54213476	+	(GAA)n	Simple_repeat	Simple_repeat	chr7	54213384	54213386	-	ENSMUST00000175115.2,ENSMUSG00000092856.2	Gm25956	ENSMUSG00000092856.2	ENSMUST00000175115.2	miRNA	chr7:54213169-54213385
chr7	54875496	54876240	-	Lx7	LINE	L1	chr7	54876113	54876115	+	ENSMUST00000206670.1,ENSMUSG00000108474.1	Gm44895	ENSMUSG00000108474.1	ENSMUST00000206670.1	TEC	chr7:54876114-54877651
chr7	55088577	55089155	-	RMER6C	LTR	ERVK	chr7	55088596	55088598	+	ENSMUST00000206146.1,ENSMUSG00000108519.1	4833421K07Rik	ENSMUSG00000108519.1	ENSMUST00000206146.1	TEC	chr7:55088597-55089987
chr7	55243934	55244038	-	U6	snRNA	snRNA	chr7	55243941	55243943	-	ENSMUST00000205872.1,ENSMUSG00000108326.1	Gm17838	ENSMUSG00000108326.1	ENSMUST00000205872.1	processed_pseudogene	chr7:55242137-55243942
chr7	55701441	55702484	+	RLTR25B	LTR	ERVK	chr7	55702153	55702155	+	ENSMUST00000158015.1,ENSMUSG00000088640.1	Gm26482	ENSMUSG00000088640.1	ENSMUST00000158015.1	snRNA	chr7:55702154-55702215
chr7	55841656	55841799	+	B3	SINE	B2	chr7	55841744	55841746	+	ENSMUST00000168271.8,ENSMUSG00000030447.15	Cyfip1	ENSMUSG00000030447.15	ENSMUST00000168271.8	protein_coding	chr7:55841745-55892431
chr7	55928675	55928893	-	MLT1E1	LTR	ERVL-MaLR	chr7	55928883	55928885	+	ENSMUST00000205656.1,ENSMUSG00000030447.15	Cyfip1	ENSMUSG00000030447.15	ENSMUST00000205656.1	protein_coding	chr7:55928884-55930471
chr7	56855842	56855935	-	RMER1B	Other	Other	chr7	56855850	56855852	-	ENSMUST00000205283.1,ENSMUSG00000108450.1	Gm44977	ENSMUSG00000108450.1	ENSMUST00000205283.1	processed_pseudogene	chr7:56855432-56855851
chr7	57591141	57591167	+	(CCCCCT)n	Simple_repeat	Simple_repeat	chr7	57591161	57591163	+	ENSMUST00000039697.13,ENSMUSG00000033676.13	Gabrb3	ENSMUSG00000033676.13	ENSMUST00000039697.13	protein_coding	chr7:57591162-57828802
chr7	57773346	57775962	-	Lx8b	LINE	L1	chr7	57775428	57775430	+	ENSMUST00000205580.1,ENSMUSG00000108597.1	Gm44708	ENSMUSG00000108597.1	ENSMUST00000205580.1	TEC	chr7:57775429-57777665
chr7	57791837	57792194	+	L1_Mus1	LINE	L1	chr7	57792127	57792129	+	ENSMUST00000136033.1,ENSMUSG00000033676.13	Gabrb3	ENSMUSG00000033676.13	ENSMUST00000136033.1	protein_coding	chr7:57792128-57816315
chr7	58005099	58005206	+	Lx5c	LINE	L1	chr7	58005204	58005206	+	ENSMUST00000104596.1,ENSMUSG00000077784.1	Gm23911	ENSMUSG00000077784.1	ENSMUST00000104596.1	snoRNA	chr7:58005205-58005338
chr7	58675236	58675509	-	L1Md_F2	LINE	L1	chr7	58675420	58675422	+	ENSMUST00000207324.1,ENSMUSG00000109393.1	Gm44936	ENSMUSG00000109393.1	ENSMUST00000207324.1	TEC	chr7:58675421-58676155
chr7	58720090	58720515	+	L1MA7	LINE	L1	chr7	58720198	58720200	+	ENSMUST00000207705.1,ENSMUSG00000109434.1	Gm44937	ENSMUSG00000109434.1	ENSMUST00000207705.1	TEC	chr7:58720199-58722889
chr7	59203785	59204137	-	IAPLTR1a_Mm	LTR	ERVK	chr7	59203801	59203803	-	ENSMUST00000207190.1,ENSMUSG00000109332.1	Gm44742	ENSMUSG00000109332.1	ENSMUST00000207190.1	TEC	chr7:59202391-59203802
chr7	59229147	59229249	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	59229176	59229178	+	ENSMUST00000200781.3,ENSMUSG00000025326.12	Ube3a	ENSMUSG00000025326.12	ENSMUST00000200781.3	protein_coding	chr7:59229177-59276088
chr7	59229147	59229249	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	59229224	59229226	+	ENSMUST00000201480.1,ENSMUSG00000025326.12	Ube3a	ENSMUSG00000025326.12	ENSMUST00000201480.1	protein_coding	chr7:59229225-59247541
chr7	59260110	59260870	-	Lx6	LINE	L1	chr7	59260200	59260202	-	ENSMUST00000207194.1,ENSMUSG00000109362.1	Gm44562	ENSMUSG00000109362.1	ENSMUST00000207194.1	TEC	chr7:59258855-59260201
chr7	59282334	59282471	-	B1_Mur4	SINE	Alu	chr7	59282414	59282416	+	ENSMUST00000202776.1,ENSMUSG00000025326.12	Ube3a	ENSMUSG00000025326.12	ENSMUST00000202776.1	protein_coding	chr7:59282415-59285762
chr7	59292384	59292569	+	T-rich	Low_complexity	Low_complexity	chr7	59292517	59292519	+	ENSMUST00000207667.1,ENSMUSG00000108886.1	Gm44830	ENSMUSG00000108886.1	ENSMUST00000207667.1	TEC	chr7:59292518-59293101
chr7	59294533	59300267	-	L1Md_T	LINE	L1	chr7	59300041	59300043	+	ENSMUST00000201162.1,ENSMUSG00000025326.12	Ube3a	ENSMUSG00000025326.12	ENSMUST00000201162.1	protein_coding	chr7:59300042-59306729
chr7	59324147	59324172	+	(TCCC)n	Simple_repeat	Simple_repeat	chr7	59324148	59324150	-	ENSMUST00000190666.1,ENSMUSG00000100826.6	Snhg14	ENSMUSG00000100826.6	ENSMUST00000190666.1	processed_transcript	chr7:59307924-59324149
chr7	59330396	59331363	-	L1M4	LINE	L1	chr7	59331188	59331190	-	ENSMUST00000207198.1,ENSMUSG00000109122.1	A230103L15Rik	ENSMUSG00000109122.1	ENSMUST00000207198.1	TEC	chr7:59327318-59331189
chr7	60922866	60922964	+	CT-rich	Low_complexity	Low_complexity	chr7	60922902	60922904	-	ENSMUST00000208825.1,ENSMUSG00000109121.1	Gm44644	ENSMUSG00000109121.1	ENSMUST00000208825.1	lincRNA	chr7:60915550-60922903
chr7	60922866	60922964	+	CT-rich	Low_complexity	Low_complexity	chr7	60922909	60922911	-	ENSMUST00000207994.1,ENSMUSG00000109121.1	Gm44644	ENSMUSG00000109121.1	ENSMUST00000207994.1	lincRNA	chr7:60917757-60922910
chr7	61828444	61830840	-	MuRRS4-int	LTR	ERV1	chr7	61829421	61829423	-	ENSMUST00000208953.1,ENSMUSG00000109394.2	A230057D06Rik	ENSMUSG00000109394.2	ENSMUST00000208953.1	lincRNA	chr7:61704519-61829422
chr7	61927833	61928731	-	Lx3B	LINE	L1	chr7	61928194	61928196	-	ENSMUST00000232435.1,ENSMUSG00000109394.2	A230057D06Rik	ENSMUSG00000109394.2	ENSMUST00000232435.1	lincRNA	chr7:61863211-61928195
chr7	61927833	61928731	-	Lx3B	LINE	L1	chr7	61928689	61928691	-	ENSMUST00000207061.1,ENSMUSG00000109394.2	A230057D06Rik	ENSMUSG00000109394.2	ENSMUST00000207061.1	lincRNA	chr7:61916400-61928690
chr7	62036726	62037023	+	Lx	LINE	L1	chr7	62036736	62036738	-	ENSMUST00000104006.1,ENSMUSG00000077194.1	Gm23431	ENSMUSG00000077194.1	ENSMUST00000104006.1	snRNA	chr7:62036631-62036737
chr7	62116092	62119014	-	ERVB4_2-I_MM-int	LTR	ERVK	chr7	62118986	62118988	-	ENSMUST00000054860.6,ENSMUSG00000045813.7	Gm9801	ENSMUSG00000045813.7	ENSMUST00000054860.6	lincRNA	chr7:62114641-62118987
chr7	63135827	63136330	+	L1_Rod	LINE	L1	chr7	63136289	63136291	-	ENSMUST00000207503.1,ENSMUSG00000109057.1	Gm44741	ENSMUSG00000109057.1	ENSMUST00000207503.1	TEC	chr7:63134164-63136290
chr7	63212556	63212579	+	GC_rich	Low_complexity	Low_complexity	chr7	63212568	63212570	-	ENSMUST00000208304.1,ENSMUSG00000030525.8	Chrna7	ENSMUSG00000030525.8	ENSMUST00000208304.1	protein_coding	chr7:63139425-63212569
chr7	63444629	63444800	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr7	63444750	63444752	+	ENSMUST00000058476.13,ENSMUSG00000033510.14	Otud7a	ENSMUSG00000033510.14	ENSMUST00000058476.13	protein_coding	chr7:63444751-63759028
chr7	63444629	63444800	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr7	63444776	63444778	+	ENSMUST00000176734.1,ENSMUSG00000033510.14	Otud7a	ENSMUSG00000033510.14	ENSMUST00000176734.1	protein_coding	chr7:63444777-63617900
chr7	63444720	63444839	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	63444750	63444752	+	ENSMUST00000058476.13,ENSMUSG00000033510.14	Otud7a	ENSMUSG00000033510.14	ENSMUST00000058476.13	protein_coding	chr7:63444751-63759028
chr7	63444720	63444839	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	63444776	63444778	+	ENSMUST00000176734.1,ENSMUSG00000033510.14	Otud7a	ENSMUSG00000033510.14	ENSMUST00000176734.1	protein_coding	chr7:63444777-63617900
chr7	63542423	63542535	-	L1Md_F2	LINE	L1	chr7	63542478	63542480	+	ENSMUST00000121016.2,ENSMUSG00000081788.2	Gm5898	ENSMUSG00000081788.2	ENSMUST00000121016.2	processed_pseudogene	chr7:63542479-63544549
chr7	63585917	63586008	+	U6	snRNA	snRNA	chr7	63585921	63585923	+	ENSMUST00000157364.1,ENSMUSG00000087989.1	Gm22228	ENSMUSG00000087989.1	ENSMUST00000157364.1	snRNA	chr7:63585922-63586022
chr7	63948625	63948756	-	B1_Mm	SINE	Alu	chr7	63948677	63948679	+	ENSMUST00000206739.1,ENSMUSG00000108418.1	Gm44627	ENSMUSG00000108418.1	ENSMUST00000206739.1	TEC	chr7:63948678-63950208
chr7	63962086	63962411	+	ORR1A2	LTR	ERVL-MaLR	chr7	63962239	63962241	+	ENSMUST00000206457.1,ENSMUSG00000108313.1	Gm45052	ENSMUSG00000108313.1	ENSMUST00000206457.1	lincRNA	chr7:63962240-63967744
chr7	64202305	64202589	-	ORR1F	LTR	ERVL-MaLR	chr7	64202523	64202525	-	ENSMUST00000206473.1,ENSMUSG00000108645.1	Gm44722	ENSMUSG00000108645.1	ENSMUST00000206473.1	TEC	chr7:64202089-64202524
chr7	64529329	64529463	-	RLTR13D3	LTR	ERVK	chr7	64529424	64529426	+	ENSMUST00000206978.1,ENSMUSG00000108721.1	Gm44721	ENSMUSG00000108721.1	ENSMUST00000206978.1	TEC	chr7:64529425-64529896
chr7	64925510	64925838	+	L1MC3	LINE	L1	chr7	64925559	64925561	-	ENSMUST00000149851.7,ENSMUSG00000030518.17	Fam189a1	ENSMUSG00000030518.17	ENSMUST00000149851.7	protein_coding	chr7:64767723-64925560
chr7	65156524	65156585	+	C-rich	Low_complexity	Low_complexity	chr7	65156569	65156571	-	ENSMUST00000119118.7,ENSMUSG00000030518.17	Fam189a1	ENSMUSG00000030518.17	ENSMUST00000119118.7	protein_coding	chr7:64756091-65156570
chr7	65480881	65481275	+	MTA_Mm	LTR	ERVL-MaLR	chr7	65481220	65481222	-	ENSMUST00000207008.1,ENSMUSG00000108533.1	Gm44792	ENSMUSG00000108533.1	ENSMUST00000207008.1	TEC	chr7:65479594-65481221
chr7	65527688	65527710	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	65527695	65527697	-	ENSMUST00000206228.1,ENSMUSG00000030516.14	Tjp1	ENSMUSG00000030516.14	ENSMUST00000206228.1	protein_coding	chr7:65342617-65527696
chr7	65527755	65527899	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr7	65527780	65527782	-	ENSMUST00000206438.1,ENSMUSG00000030516.14	Tjp1	ENSMUSG00000030516.14	ENSMUST00000206438.1	protein_coding	chr7:65513099-65527781
chr7	65861994	65862084	+	GC_rich	Low_complexity	Low_complexity	chr7	65862028	65862030	+	ENSMUST00000055576.11,ENSMUSG00000030513.14	Pcsk6	ENSMUSG00000030513.14	ENSMUST00000055576.11	protein_coding	chr7:65862029-66050386
chr7	66057790	66059072	+	ORR1A4-int	LTR	ERVL-MaLR	chr7	66059002	66059004	+	ENSMUST00000206150.1,ENSMUSG00000030512.13	Snrpa1	ENSMUSG00000030512.13	ENSMUST00000206150.1	protein_coding	chr7:66059003-66074343
chr7	66119302	66119403	-	U6	snRNA	snRNA	chr7	66119402	66119404	-	ENSMUST00000083866.1,ENSMUSG00000065800.1	Gm23042	ENSMUSG00000065800.1	ENSMUST00000083866.1	snRNA	chr7:66119303-66119403
chr7	66190192	66190557	-	L1MB3	LINE	L1	chr7	66190554	66190556	+	ENSMUST00000206648.1,ENSMUSG00000108686.1	Gm45080	ENSMUSG00000108686.1	ENSMUST00000206648.1	processed_pseudogene	chr7:66190555-66190837
chr7	66365773	66366018	+	IMPB_01	Satellite	Satellite	chr7	66365904	66365906	+	ENSMUST00000107486.1,ENSMUSG00000078677.1	Gm10974	ENSMUSG00000078677.1	ENSMUST00000107486.1	protein_coding	chr7:66365905-66386309
chr7	66618740	66619659	+	RMER17A2	LTR	ERVK	chr7	66619147	66619149	-	ENSMUST00000209012.1,ENSMUSG00000109249.1	Gm44610	ENSMUSG00000109249.1	ENSMUST00000209012.1	TEC	chr7:66615322-66619148
chr7	66655008	66655478	-	Charlie1a	DNA	hAT-Charlie	chr7	66655023	66655025	-	ENSMUST00000207785.1,ENSMUSG00000030509.17	Asb7	ENSMUSG00000030509.17	ENSMUST00000207785.1	protein_coding	chr7:66647590-66655024
chr7	66722141	66723606	-	L1_Mur2	LINE	L1	chr7	66723118	66723120	+	ENSMUST00000207179.1,ENSMUSG00000109133.1	Gm45098	ENSMUSG00000109133.1	ENSMUST00000207179.1	TEC	chr7:66723119-66723775
chr7	66961658	66961981	-	L1M4	LINE	L1	chr7	66961917	66961919	-	ENSMUST00000207830.1,ENSMUSG00000109079.1	Gm44755	ENSMUSG00000109079.1	ENSMUST00000207830.1	TEC	chr7:66959817-66961918
chr7	67272233	67272329	-	RSINE1	SINE	B4	chr7	67272241	67272243	-	ENSMUST00000207632.1,ENSMUSG00000109539.1	Gm44667	ENSMUSG00000109539.1	ENSMUST00000207632.1	TEC	chr7:67268906-67272242
chr7	67579233	67580601	+	Lx7	LINE	L1	chr7	67579749	67579751	-	ENSMUST00000190115.6,ENSMUSG00000030556.13	Lrrc28	ENSMUSG00000030556.13	ENSMUST00000190115.6	protein_coding	chr7:67514406-67579750
chr7	67759691	67759721	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr7	67759692	67759694	-	ENSMUST00000074233.11,ENSMUSG00000030554.16	Synm	ENSMUSG00000030554.16	ENSMUST00000074233.11	protein_coding	chr7:67730160-67759693
chr7	67759691	67759721	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr7	67759692	67759694	-	ENSMUST00000208231.1,ENSMUSG00000030554.16	Synm	ENSMUSG00000030554.16	ENSMUST00000208231.1	protein_coding	chr7:67730168-67759693
chr7	67778296	67778783	-	MT2_Mm	LTR	ERVL	chr7	67778529	67778531	-	ENSMUST00000116959.1,ENSMUSG00000080609.1	Gm23844	ENSMUSG00000080609.1	ENSMUST00000116959.1	miRNA	chr7:67778410-67778530
chr7	67818849	67819564	+	RMER1B	Other	Other	chr7	67819249	67819251	+	ENSMUST00000208898.1,ENSMUSG00000109464.1	Gm34350	ENSMUSG00000109464.1	ENSMUST00000208898.1	lincRNA	chr7:67819250-67829618
chr7	68273712	68274148	-	RLTR28	LTR	ERVL	chr7	68273838	68273840	+	ENSMUST00000125685.8,ENSMUSG00000074071.11	Fam169b	ENSMUSG00000074071.11	ENSMUST00000125685.8	protein_coding	chr7:68273839-68363092
chr7	68275057	68275103	-	FAM	SINE	Alu	chr7	68275097	68275099	-	ENSMUST00000135564.7,ENSMUSG00000086628.7	Gm16157	ENSMUSG00000086628.7	ENSMUST00000135564.7	antisense	chr7:68266339-68275098
chr7	68300112	68300356	-	B4	SINE	B4	chr7	68300112	68300114	+	ENSMUST00000098378.8,ENSMUSG00000074071.11	Fam169b	ENSMUSG00000074071.11	ENSMUST00000098378.8	protein_coding	chr7:68300113-68363087
chr7	68316950	68317141	+	B4A	SINE	B4	chr7	68317031	68317033	-	ENSMUST00000207912.1,ENSMUSG00000109453.1	4930405G09Rik	ENSMUSG00000109453.1	ENSMUST00000207912.1	TEC	chr7:68315973-68317032
chr7	68331084	68331701	-	L1M2	LINE	L1	chr7	68331123	68331125	+	ENSMUST00000153458.2,ENSMUSG00000074071.11	Fam169b	ENSMUSG00000074071.11	ENSMUST00000153458.2	protein_coding	chr7:68331124-68353725
chr7	68332778	68333485	-	L1M2	LINE	L1	chr7	68332988	68332990	+	ENSMUST00000209119.1,ENSMUSG00000109096.1	Gm44888	ENSMUSG00000109096.1	ENSMUST00000209119.1	TEC	chr7:68332989-68335529
chr7	68432644	68432683	+	(TG)n	Simple_repeat	Simple_repeat	chr7	68432661	68432663	+	ENSMUST00000208336.1,ENSMUSG00000108828.1	Gm34549	ENSMUSG00000108828.1	ENSMUST00000208336.1	lincRNA	chr7:68432662-68436368
chr7	68432644	68432683	+	(TG)n	Simple_repeat	Simple_repeat	chr7	68432661	68432663	+	ENSMUST00000207057.1,ENSMUSG00000108828.1	Gm34549	ENSMUSG00000108828.1	ENSMUST00000207057.1	lincRNA	chr7:68432662-68436390
chr7	68914214	68915017	+	L1MC1	LINE	L1	chr7	68914597	68914599	-	ENSMUST00000208180.1,ENSMUSG00000109407.1	Gm34664	ENSMUSG00000109407.1	ENSMUST00000208180.1	lincRNA	chr7:68909410-68914598
chr7	68916007	68916321	+	ORR1F	LTR	ERVL-MaLR	chr7	68916007	68916009	-	ENSMUST00000208503.1,ENSMUSG00000109407.1	Gm34664	ENSMUSG00000109407.1	ENSMUST00000208503.1	lincRNA	chr7:68843099-68916008
chr7	68916007	68916321	+	ORR1F	LTR	ERVL-MaLR	chr7	68916015	68916017	-	ENSMUST00000207409.1,ENSMUSG00000109407.1	Gm34664	ENSMUSG00000109407.1	ENSMUST00000207409.1	lincRNA	chr7:68843324-68916016
chr7	69495841	69496147	-	RLTR27	LTR	ERVK	chr7	69496093	69496095	+	ENSMUST00000207348.1,ENSMUSG00000108885.1	4930402F11Rik	ENSMUSG00000108885.1	ENSMUST00000207348.1	lincRNA	chr7:69496094-69499689
chr7	69495841	69496147	-	RLTR27	LTR	ERVK	chr7	69496105	69496107	+	ENSMUST00000208612.1,ENSMUSG00000108885.1	4930402F11Rik	ENSMUSG00000108885.1	ENSMUST00000208612.1	lincRNA	chr7:69496106-69519469
chr7	69495841	69496147	-	RLTR27	LTR	ERVK	chr7	69496116	69496118	+	ENSMUST00000207781.1,ENSMUSG00000108885.1	4930402F11Rik	ENSMUSG00000108885.1	ENSMUST00000207781.1	lincRNA	chr7:69496117-69518839
chr7	69498578	69498685	-	U6	snRNA	snRNA	chr7	69498684	69498686	-	ENSMUST00000083231.1,ENSMUSG00000065165.1	Gm23815	ENSMUSG00000065165.1	ENSMUST00000083231.1	snRNA	chr7:69498579-69498685
chr7	70207197	70207461	+	Lx5	LINE	L1	chr7	70207434	70207436	+	ENSMUST00000208979.1,ENSMUSG00000109280.1	Gm35325	ENSMUSG00000109280.1	ENSMUST00000208979.1	lincRNA	chr7:70207435-70209182
chr7	70531036	70531241	-	B3	SINE	B2	chr7	70531221	70531223	+	ENSMUST00000209120.1,ENSMUSG00000108899.1	Gm44811	ENSMUSG00000108899.1	ENSMUST00000209120.1	TEC	chr7:70531222-70531449
chr7	70592821	70592960	+	RSINE1	SINE	B4	chr7	70592889	70592891	+	ENSMUST00000208305.1,ENSMUSG00000109018.1	Gm44809	ENSMUSG00000109018.1	ENSMUST00000208305.1	TEC	chr7:70592890-70593882
chr7	70752412	70752497	+	5S	rRNA	rRNA	chr7	70752415	70752417	+	ENSMUST00000158776.1,ENSMUSG00000089401.1	Gm24880	ENSMUSG00000089401.1	ENSMUST00000158776.1	rRNA	chr7:70752416-70752500
chr7	71909603	71910026	+	Lx2A1	LINE	L1	chr7	71909692	71909694	+	ENSMUST00000205699.1,ENSMUSG00000108669.1	4930441H08Rik	ENSMUSG00000108669.1	ENSMUST00000205699.1	lincRNA	chr7:71909693-71939191
chr7	73101999	73102140	+	B1_Mur4	SINE	Alu	chr7	73102067	73102069	-	ENSMUST00000205529.1,ENSMUSG00000108383.1	Gm6567	ENSMUSG00000108383.1	ENSMUST00000205529.1	lincRNA	chr7:73097749-73102068
chr7	73310377	73310476	+	MIRb	SINE	MIR	chr7	73310379	73310381	+	ENSMUST00000205260.1,ENSMUSG00000108530.1	4930429H19Rik	ENSMUSG00000108530.1	ENSMUST00000205260.1	lincRNA	chr7:73310380-73315193
chr7	73310520	73310704	+	(TGG)n	Simple_repeat	Simple_repeat	chr7	73310529	73310531	+	ENSMUST00000205600.1,ENSMUSG00000108530.1	4930429H19Rik	ENSMUSG00000108530.1	ENSMUST00000205600.1	lincRNA	chr7:73310530-73311954
chr7	73391133	73391255	+	G-rich	Low_complexity	Low_complexity	chr7	73391159	73391161	+	ENSMUST00000128471.1,ENSMUSG00000070509.15	Rgma	ENSMUSG00000070509.15	ENSMUST00000128471.1	protein_coding	chr7:73391160-73409451
chr7	73391133	73391255	+	G-rich	Low_complexity	Low_complexity	chr7	73391226	73391228	+	ENSMUST00000139780.2,ENSMUSG00000070509.15	Rgma	ENSMUSG00000070509.15	ENSMUST00000139780.2	protein_coding	chr7:73391227-73419899
chr7	73460449	73461625	+	MTD-int	LTR	ERVL-MaLR	chr7	73460632	73460634	-	ENSMUST00000206316.1,ENSMUSG00000108741.1	Gm44553	ENSMUSG00000108741.1	ENSMUST00000206316.1	TEC	chr7:73458597-73460633
chr7	73461668	73462099	+	RLTR10C	LTR	ERVK	chr7	73461732	73461734	-	ENSMUST00000038366.8,ENSMUSG00000078671.11	Chd2	ENSMUSG00000078671.11	ENSMUST00000038366.8	protein_coding	chr7:73451813-73461733
chr7	73501960	73502084	+	L2	LINE	L2	chr7	73502035	73502037	-	ENSMUST00000199641.1,ENSMUSG00000078671.11	Chd2	ENSMUSG00000078671.11	ENSMUST00000199641.1	protein_coding	chr7:73499642-73502036
chr7	73528688	73528832	+	B1_Mus2	SINE	Alu	chr7	73528724	73528726	-	ENSMUST00000205707.1,ENSMUSG00000108812.1	C130083A15Rik	ENSMUSG00000108812.1	ENSMUST00000205707.1	TEC	chr7:73527266-73528725
chr7	73541830	73541867	+	(A)n	Simple_repeat	Simple_repeat	chr7	73541829	73541831	-	ENSMUST00000197800.1,ENSMUSG00000078671.11	Chd2	ENSMUSG00000078671.11	ENSMUST00000197800.1	protein_coding	chr7:73538090-73541830
chr7	73627378	73627462	-	RSINE1	SINE	B4	chr7	73627434	73627436	-	ENSMUST00000206393.1,ENSMUSG00000108497.1	Gm44738	ENSMUSG00000108497.1	ENSMUST00000206393.1	lincRNA	chr7:73626701-73627435
chr7	73645986	73646089	-	U6	snRNA	snRNA	chr7	73646088	73646090	-	ENSMUST00000083795.1,ENSMUSG00000065729.1	Gm26176	ENSMUSG00000065729.1	ENSMUST00000083795.1	snRNA	chr7:73645985-73646089
chr7	73662048	73662179	+	7SK	RNA	RNA	chr7	73662047	73662049	+	ENSMUST00000158766.1,ENSMUSG00000089391.1	Gm23020	ENSMUSG00000089391.1	ENSMUST00000158766.1	misc_RNA	chr7:73662048-73662300
chr7	73672202	73672695	-	MT2_Mm	LTR	ERVL	chr7	73672389	73672391	-	ENSMUST00000205943.1,ENSMUSG00000108550.1	Gm44736	ENSMUSG00000108550.1	ENSMUST00000205943.1	lincRNA	chr7:73670299-73672390
chr7	73678220	73678713	-	MT2_Mm	LTR	ERVL	chr7	73678304	73678306	-	ENSMUST00000205294.1,ENSMUSG00000108473.1	Gm44739	ENSMUSG00000108473.1	ENSMUST00000205294.1	lincRNA	chr7:73676880-73678305
chr7	73686586	73686763	-	ORR1C1	LTR	ERVL-MaLR	chr7	73686600	73686602	-	ENSMUST00000205991.1,ENSMUSG00000108337.1	Gm4971	ENSMUSG00000108337.1	ENSMUST00000205991.1	processed_pseudogene	chr7:73685494-73686601
chr7	73765876	73766102	+	RLTR17B_Mm	LTR	ERVK	chr7	73765935	73765937	+	ENSMUST00000206337.1,ENSMUSG00000078670.3	Fam174b	ENSMUSG00000078670.3	ENSMUST00000206337.1	protein_coding	chr7:73765936-73776018
chr7	73948282	73948628	+	ORR1A0	LTR	ERVL-MaLR	chr7	73948422	73948424	+	ENSMUST00000191751.1,ENSMUSG00000102384.1	Gm38143	ENSMUSG00000102384.1	ENSMUST00000191751.1	processed_transcript	chr7:73948423-73958042
chr7	74013683	74013734	+	C-rich	Low_complexity	Low_complexity	chr7	74013689	74013691	-	ENSMUST00000191970.1,ENSMUSG00000025789.9	St8sia2	ENSMUSG00000025789.9	ENSMUST00000191970.1	protein_coding	chr7:73960851-74013690
chr7	74229441	74235832	-	L1Md_T	LINE	L1	chr7	74235557	74235559	+	ENSMUST00000184860.1,ENSMUSG00000098303.1	Gm27459	ENSMUSG00000098303.1	ENSMUST00000184860.1	miRNA	chr7:74235558-74235664
chr7	74554597	74554619	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	74554613	74554615	-	ENSMUST00000026897.13,ENSMUSG00000025790.14	Slco3a1	ENSMUSG00000025790.14	ENSMUST00000026897.13	protein_coding	chr7:74281858-74554614
chr7	74554778	74554837	+	(TCC)n	Simple_repeat	Simple_repeat	chr7	74554779	74554781	-	ENSMUST00000107453.7,ENSMUSG00000025790.14	Slco3a1	ENSMUSG00000025790.14	ENSMUST00000107453.7	protein_coding	chr7:74295371-74554780
chr7	75029652	75030303	-	Lx8	LINE	L1	chr7	75030193	75030195	+	ENSMUST00000206433.1,ENSMUSG00000108803.1	4930533N22Rik	ENSMUSG00000108803.1	ENSMUST00000206433.1	lincRNA	chr7:75030194-75058162
chr7	75029652	75030303	-	Lx8	LINE	L1	chr7	75030232	75030234	+	ENSMUST00000206684.1,ENSMUSG00000108803.1	4930533N22Rik	ENSMUSG00000108803.1	ENSMUST00000206684.1	lincRNA	chr7:75030233-75075164
chr7	75161244	75161613	+	IAPLTR2a	LTR	ERVK	chr7	75161268	75161270	-	ENSMUST00000206845.1,ENSMUSG00000053025.13	Sv2b	ENSMUSG00000053025.13	ENSMUST00000206845.1	protein_coding	chr7:75156607-75161269
chr7	75164595	75164994	+	IAPLTR2a	LTR	ERVK	chr7	75164627	75164629	-	ENSMUST00000206675.1,ENSMUSG00000053025.13	Sv2b	ENSMUSG00000053025.13	ENSMUST00000206675.1	protein_coding	chr7:75156607-75164628
chr7	75219952	75220149	+	B3	SINE	B2	chr7	75220018	75220020	-	ENSMUST00000206344.1,ENSMUSG00000053025.13	Sv2b	ENSMUSG00000053025.13	ENSMUST00000206344.1	protein_coding	chr7:75116333-75220019
chr7	75481922	75482044	-	B1_Mm	SINE	Alu	chr7	75481998	75482000	+	ENSMUST00000206671.1,ENSMUSG00000108542.1	Gm44834	ENSMUSG00000108542.1	ENSMUST00000206671.1	TEC	chr7:75481999-75483394
chr7	75668852	75668906	+	MTD	LTR	ERVL-MaLR	chr7	75668872	75668874	+	ENSMUST00000157271.1,ENSMUSG00000087896.1	Gm25282	ENSMUSG00000087896.1	ENSMUST00000157271.1	snRNA	chr7:75668873-75668956
chr7	75757058	75757581	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	75757367	75757369	-	ENSMUST00000103773.1,ENSMUSG00000076961.1	Gm23251	ENSMUSG00000076961.1	ENSMUST00000103773.1	miRNA	chr7:75757259-75757368
chr7	75770709	75772202	-	RLTR19-int	LTR	ERVK	chr7	75772045	75772047	-	ENSMUST00000206358.1,ENSMUSG00000097415.2	AU020206	ENSMUSG00000097415.2	ENSMUST00000206358.1	lincRNA	chr7:75769038-75772046
chr7	75848419	75848448	+	GC_rich	Low_complexity	Low_complexity	chr7	75848440	75848442	+	ENSMUST00000205887.1,ENSMUSG00000055652.14	Klhl25	ENSMUSG00000055652.14	ENSMUST00000205887.1	protein_coding	chr7:75848441-75865627
chr7	76699666	76699717	+	(TTTTG)n	Simple_repeat	Simple_repeat	chr7	76699716	76699718	-	ENSMUST00000206401.1,ENSMUSG00000108771.1	Gm45210	ENSMUSG00000108771.1	ENSMUST00000206401.1	TEC	chr7:76698141-76699717
chr7	77412024	77412584	-	RLTR20D	LTR	ERVK	chr7	77412572	77412574	+	ENSMUST00000206827.1,ENSMUSG00000108324.1	Gm44608	ENSMUSG00000108324.1	ENSMUST00000206827.1	TEC	chr7:77412573-77413427
chr7	77910164	77910320	-	U1	snRNA	snRNA	chr7	77910319	77910321	-	ENSMUST00000083006.1,ENSMUSG00000064940.1	Gm23239	ENSMUSG00000064940.1	ENSMUST00000083006.1	snRNA	chr7:77910140-77910320
chr7	78026535	78026709	+	MER5A	DNA	hAT-Charlie	chr7	78026639	78026641	-	ENSMUST00000196301.1,ENSMUSG00000104817.1	Gm44358	ENSMUSG00000104817.1	ENSMUST00000196301.1	miRNA	chr7:78026543-78026640
chr7	78212246	78212921	+	Charlie2b	DNA	hAT-Charlie	chr7	78212698	78212700	-	ENSMUST00000205611.1,ENSMUSG00000108630.1	Gm44607	ENSMUSG00000108630.1	ENSMUST00000205611.1	TEC	chr7:78211610-78212699
chr7	78578401	78578428	+	(TCCC)n	Simple_repeat	Simple_repeat	chr7	78578407	78578409	-	ENSMUST00000039431.13,ENSMUSG00000059146.12	Ntrk3	ENSMUSG00000059146.12	ENSMUST00000039431.13	protein_coding	chr7:78175959-78578408
chr7	78578401	78578428	+	(TCCC)n	Simple_repeat	Simple_repeat	chr7	78578402	78578404	-	ENSMUST00000206268.1,ENSMUSG00000059146.12	Ntrk3	ENSMUSG00000059146.12	ENSMUST00000206268.1	protein_coding	chr7:78517484-78578403
chr7	78657533	78657752	+	ID_B1	SINE	B4	chr7	78657723	78657725	-	ENSMUST00000206091.1,ENSMUSG00000059146.12	Ntrk3	ENSMUSG00000059146.12	ENSMUST00000206091.1	protein_coding	chr7:78577536-78657724
chr7	78737587	78738411	+	L1ME1	LINE	L1	chr7	78738009	78738011	-	ENSMUST00000206877.1,ENSMUSG00000059146.12	Ntrk3	ENSMUSG00000059146.12	ENSMUST00000206877.1	protein_coding	chr7:78587376-78738010
chr7	78737587	78738411	+	L1ME1	LINE	L1	chr7	78738011	78738013	-	ENSMUST00000206500.1,ENSMUSG00000059146.12	Ntrk3	ENSMUSG00000059146.12	ENSMUST00000206500.1	protein_coding	chr7:78726704-78738012
chr7	78737587	78738411	+	L1ME1	LINE	L1	chr7	78738011	78738013	-	ENSMUST00000205411.1,ENSMUSG00000059146.12	Ntrk3	ENSMUSG00000059146.12	ENSMUST00000205411.1	protein_coding	chr7:78730480-78738012
chr7	78899431	78901371	+	RLTR10-int	LTR	ERVK	chr7	78900453	78900455	+	ENSMUST00000205882.1,ENSMUSG00000030609.18	Aen	ENSMUSG00000030609.18	ENSMUST00000205882.1	protein_coding	chr7:78900454-78902391
chr7	78923414	78924190	-	RLTR33	LTR	ERVK	chr7	78923885	78923887	-	ENSMUST00000206812.1,ENSMUSG00000108670.1	Gm44815	ENSMUSG00000108670.1	ENSMUST00000206812.1	TEC	chr7:78922254-78923886
chr7	79128622	79128812	-	ID_B1	SINE	B4	chr7	79128678	79128680	-	ENSMUST00000206402.1,ENSMUSG00000030606.8	Hapln3	ENSMUSG00000030606.8	ENSMUST00000206402.1	protein_coding	chr7:79121737-79128679
chr7	79136947	79137146	-	ID_B1	SINE	B4	chr7	79137025	79137027	-	ENSMUST00000205649.1,ENSMUSG00000030605.15	Mfge8	ENSMUSG00000030605.15	ENSMUST00000205649.1	protein_coding	chr7:79134139-79137026
chr7	79277657	79277798	+	B1_Mm	SINE	Alu	chr7	79277766	79277768	+	ENSMUST00000205859.1,ENSMUSG00000108521.1	Gm44639	ENSMUSG00000108521.1	ENSMUST00000205859.1	TEC	chr7:79277767-79280775
chr7	79298992	79299045	+	(GGGGA)n	Simple_repeat	Simple_repeat	chr7	79299024	79299026	+	ENSMUST00000205557.1,ENSMUSG00000108460.1	Gm39041	ENSMUSG00000108460.1	ENSMUST00000205557.1	TEC	chr7:79299025-79302926
chr7	79516816	79516945	-	L4_C_Mam	LINE	RTE-X	chr7	79516881	79516883	+	ENSMUST00000195696.1,ENSMUSG00000103831.1	Gm37608	ENSMUSG00000103831.1	ENSMUST00000195696.1	TEC	chr7:79516882-79518761
chr7	79723263	79723319	+	CT-rich	Low_complexity	Low_complexity	chr7	79723287	79723289	-	ENSMUST00000205553.1,ENSMUSG00000030546.14	Plin1	ENSMUSG00000030546.14	ENSMUST00000205553.1	protein_coding	chr7:79722381-79723288
chr7	79831736	79832056	+	HAL1	LINE	L1	chr7	79831870	79831872	-	ENSMUST00000206387.1,ENSMUSG00000108476.1	Gm44974	ENSMUSG00000108476.1	ENSMUST00000206387.1	TEC	chr7:79830593-79831871
chr7	79918611	79919024	+	L1M4	LINE	L1	chr7	79918968	79918970	+	ENSMUST00000205705.1,ENSMUSG00000097685.2	Gm26646	ENSMUSG00000097685.2	ENSMUST00000205705.1	antisense	chr7:79918969-79920641
chr7	79924865	79924986	+	B1_Mm	SINE	Alu	chr7	79924866	79924868	-	ENSMUST00000206403.1,ENSMUSG00000108350.1	Gm44950	ENSMUSG00000108350.1	ENSMUST00000206403.1	TEC	chr7:79922572-79924867
chr7	79949161	79949212	+	(TCC)n	Simple_repeat	Simple_repeat	chr7	79949186	79949188	+	ENSMUST00000103871.1,ENSMUSG00000077059.1	Gm24541	ENSMUSG00000077059.1	ENSMUST00000103871.1	miRNA	chr7:79949187-79949282
chr7	80024813	80024859	+	G-rich	Low_complexity	Low_complexity	chr7	80024813	80024815	+	ENSMUST00000164056.8,ENSMUSG00000048897.15	Zfp710	ENSMUSG00000048897.15	ENSMUST00000164056.8	protein_coding	chr7:80024814-80094173
chr7	80024813	80024859	+	G-rich	Low_complexity	Low_complexity	chr7	80024833	80024835	+	ENSMUST00000166250.7,ENSMUSG00000048897.15	Zfp710	ENSMUSG00000048897.15	ENSMUST00000166250.7	protein_coding	chr7:80024834-80091830
chr7	80036607	80036733	-	PB1D9	SINE	Alu	chr7	80036704	80036706	+	ENSMUST00000206449.1,ENSMUSG00000108365.1	Gm44951	ENSMUSG00000108365.1	ENSMUST00000206449.1	TEC	chr7:80036705-80038728
chr7	80112609	80112689	+	RSINE1	SINE	B4	chr7	80112633	80112635	-	ENSMUST00000206384.1,ENSMUSG00000108494.1	Gm45203	ENSMUSG00000108494.1	ENSMUST00000206384.1	TEC	chr7:80110804-80112634
chr7	80237911	80237978	-	B1F	SINE	Alu	chr7	80237943	80237945	-	ENSMUST00000119674.1,ENSMUSG00000082954.1	Gm15504	ENSMUSG00000082954.1	ENSMUST00000119674.1	processed_pseudogene	chr7:80237680-80237944
chr7	80396320	80396509	-	B2_Mm1a	SINE	B2	chr7	80396352	80396354	-	ENSMUST00000146771.1,ENSMUSG00000030530.15	Furin	ENSMUSG00000030530.15	ENSMUST00000146771.1	protein_coding	chr7:80388585-80396353
chr7	80401664	80401753	-	Charlie15a	DNA	hAT-Charlie	chr7	80401706	80401708	-	ENSMUST00000120753.2,ENSMUSG00000030530.15	Furin	ENSMUSG00000030530.15	ENSMUST00000120753.2	protein_coding	chr7:80389196-80401707
chr7	80402604	80402774	+	GC_rich	Low_complexity	Low_complexity	chr7	80402761	80402763	-	ENSMUST00000122232.7,ENSMUSG00000030530.15	Furin	ENSMUSG00000030530.15	ENSMUST00000122232.7	protein_coding	chr7:80389194-80402762
chr7	80471654	80471849	+	B3	SINE	B2	chr7	80471780	80471782	-	ENSMUST00000205713.1,ENSMUSG00000030528.12	Blm	ENSMUSG00000030528.12	ENSMUST00000205713.1	protein_coding	chr7:80469275-80471781
chr7	80481896	80482148	+	MLT1A0	LTR	ERVL-MaLR	chr7	80481903	80481905	-	ENSMUST00000205584.1,ENSMUSG00000030528.12	Blm	ENSMUSG00000030528.12	ENSMUST00000205584.1	protein_coding	chr7:80474138-80481904
chr7	80599124	80599314	-	B2_Mm2	SINE	B2	chr7	80599135	80599137	-	ENSMUST00000127182.1,ENSMUSG00000030527.15	Crtc3	ENSMUSG00000030527.15	ENSMUST00000127182.1	protein_coding	chr7:80595720-80599136
chr7	80862884	80863023	-	B1_Mm	SINE	Alu	chr7	80862895	80862897	+	ENSMUST00000155128.2,ENSMUSG00000038797.13	Zscan2	ENSMUSG00000038797.13	ENSMUST00000155128.2	protein_coding	chr7:80862896-80875098
chr7	80916295	80916528	-	MIRc	SINE	MIR	chr7	80916329	80916331	-	ENSMUST00000153053.1,ENSMUSG00000025724.12	Sec11a	ENSMUSG00000025724.12	ENSMUST00000153053.1	protein_coding	chr7:80915566-80916330
chr7	80987207	80987390	-	B4	SINE	B4	chr7	80987256	80987258	-	ENSMUST00000209433.1,ENSMUSG00000109008.2	Gm44899	ENSMUSG00000109008.2	ENSMUST00000209433.1	lincRNA	chr7:80980846-80987257
chr7	80993572	80993705	+	C-rich	Low_complexity	Low_complexity	chr7	80993680	80993682	+	ENSMUST00000107353.2,ENSMUSG00000005621.11	Zfp592	ENSMUSG00000005621.11	ENSMUST00000107353.2	protein_coding	chr7:80993681-81045164
chr7	81057591	81057688	+	(CTGGGG)n	Simple_repeat	Simple_repeat	chr7	81057599	81057601	+	ENSMUST00000107348.1,ENSMUSG00000038763.12	Alpk3	ENSMUSG00000038763.12	ENSMUST00000107348.1	protein_coding	chr7:81057600-81105612
chr7	81205006	81205146	+	RSINE1	SINE	B4	chr7	81205009	81205011	+	ENSMUST00000207652.1,ENSMUSG00000109323.1	Gm44968	ENSMUSG00000109323.1	ENSMUST00000207652.1	lincRNA	chr7:81205010-81210876
chr7	81454674	81454704	+	(CGGG)n	Simple_repeat	Simple_repeat	chr7	81454674	81454676	-	ENSMUST00000178892.2,ENSMUSG00000025586.17	Cpeb1	ENSMUSG00000025586.17	ENSMUST00000178892.2	protein_coding	chr7:81348280-81454675
chr7	81478218	81478786	+	RMER15	LTR	ERVL	chr7	81478409	81478411	-	ENSMUST00000125634.1,ENSMUSG00000062444.14	Ap3b2	ENSMUSG00000062444.14	ENSMUST00000125634.1	protein_coding	chr7:81477123-81478410
chr7	81590797	81590923	-	B3	SINE	B2	chr7	81590893	81590895	+	ENSMUST00000208537.1,ENSMUSG00000109428.1	Gm45698	ENSMUSG00000109428.1	ENSMUST00000208537.1	TEC	chr7:81590894-81592028
chr7	81669727	81669835	+	U6	snRNA	snRNA	chr7	81669727	81669729	+	ENSMUST00000157432.1,ENSMUSG00000088057.1	Gm26149	ENSMUSG00000088057.1	ENSMUST00000157432.1	snRNA	chr7:81669728-81669835
chr7	81706941	81707001	+	G-rich	Low_complexity	Low_complexity	chr7	81706943	81706945	-	ENSMUST00000026922.14,ENSMUSG00000025813.14	Homer2	ENSMUSG00000025813.14	ENSMUST00000026922.14	protein_coding	chr7:81609730-81706944
chr7	81800393	81800540	-	L1M5	LINE	L1	chr7	81800492	81800494	-	ENSMUST00000208114.1,ENSMUSG00000025103.8	Btbd1	ENSMUSG00000025103.8	ENSMUST00000208114.1	protein_coding	chr7:81793515-81800493
chr7	81855732	81855799	+	PB1D9	SINE	Alu	chr7	81855793	81855795	-	ENSMUST00000085094.3,ENSMUSG00000066378.3	Gm10160	ENSMUSG00000066378.3	ENSMUST00000085094.3	protein_coding	chr7:81855533-81855794
chr7	81855777	81855902	-	B3	SINE	B2	chr7	81855793	81855795	-	ENSMUST00000085094.3,ENSMUSG00000066378.3	Gm10160	ENSMUSG00000066378.3	ENSMUST00000085094.3	protein_coding	chr7:81855533-81855794
chr7	82155059	82161239	-	L1Md_T	LINE	L1	chr7	82157023	82157025	-	ENSMUST00000208775.1,ENSMUSG00000108845.1	Gm45090	ENSMUSG00000108845.1	ENSMUST00000208775.1	lincRNA	chr7:82155877-82157024
chr7	82649115	82649176	+	RLTR20A4	LTR	ERVK	chr7	82649132	82649134	+	ENSMUST00000207868.1,ENSMUSG00000038563.14	Efl1	ENSMUSG00000038563.14	ENSMUST00000207868.1	protein_coding	chr7:82649133-82659026
chr7	82670190	82670248	-	PB1D11	SINE	Alu	chr7	82670228	82670230	+	ENSMUST00000153265.1,ENSMUSG00000038563.14	Efl1	ENSMUSG00000038563.14	ENSMUST00000153265.1	protein_coding	chr7:82670229-82674544
chr7	82694699	82695404	-	Lx5c	LINE	L1	chr7	82695398	82695400	+	ENSMUST00000209142.1,ENSMUSG00000108991.1	Gm45807	ENSMUSG00000108991.1	ENSMUST00000209142.1	TEC	chr7:82695399-82698272
chr7	82695397	82697176	-	L1_Mur2	LINE	L1	chr7	82695398	82695400	+	ENSMUST00000209142.1,ENSMUSG00000108991.1	Gm45807	ENSMUSG00000108991.1	ENSMUST00000209142.1	TEC	chr7:82695399-82698272
chr7	82851450	82851625	+	RMER15	LTR	ERVL	chr7	82851598	82851600	+	ENSMUST00000179662.7,ENSMUSG00000030636.15	1700010L04Rik	ENSMUSG00000030636.15	ENSMUST00000179662.7	lincRNA	chr7:82851599-82859849
chr7	82856008	82856352	+	MER115	DNA	hAT-Tip100	chr7	82856252	82856254	+	ENSMUST00000178848.5,ENSMUSG00000030636.15	1700010L04Rik	ENSMUSG00000030636.15	ENSMUST00000178848.5	lincRNA	chr7:82856253-82859848
chr7	82856008	82856352	+	MER115	DNA	hAT-Tip100	chr7	82856262	82856264	+	ENSMUST00000032872.10,ENSMUSG00000030636.15	1700010L04Rik	ENSMUSG00000030636.15	ENSMUST00000032872.10	lincRNA	chr7:82856263-82859404
chr7	82867069	82867106	+	GC_rich	Low_complexity	Low_complexity	chr7	82867073	82867075	-	ENSMUST00000209046.1,ENSMUSG00000109383.1	Gm36584	ENSMUSG00000109383.1	ENSMUST00000209046.1	lincRNA	chr7:82852498-82867074
chr7	83061717	83061954	+	LTR88b	LTR	Gypsy?	chr7	83061782	83061784	+	ENSMUST00000208611.1,ENSMUSG00000053528.6	A530021J07Rik	ENSMUSG00000053528.6	ENSMUST00000208611.1	lincRNA	chr7:83061783-83179429
chr7	83084161	83084465	+	MLT1A0	LTR	ERVL-MaLR	chr7	83084380	83084382	+	ENSMUST00000208699.1,ENSMUSG00000053528.6	A530021J07Rik	ENSMUSG00000053528.6	ENSMUST00000208699.1	lincRNA	chr7:83084381-83179429
chr7	83148440	83148590	-	ORR1F	LTR	ERVL-MaLR	chr7	83148469	83148471	+	ENSMUST00000207727.1,ENSMUSG00000053528.6	A530021J07Rik	ENSMUSG00000053528.6	ENSMUST00000207727.1	lincRNA	chr7:83148470-83179429
chr7	83148641	83148924	+	MER2	DNA	TcMar-Tigger	chr7	83148643	83148645	+	ENSMUST00000066005.5,ENSMUSG00000053528.6	A530021J07Rik	ENSMUSG00000053528.6	ENSMUST00000066005.5	lincRNA	chr7:83148644-83155922
chr7	83178510	83178865	-	MLT1J1	LTR	ERVL-MaLR	chr7	83178811	83178813	+	ENSMUST00000208111.1,ENSMUSG00000053528.6	A530021J07Rik	ENSMUSG00000053528.6	ENSMUST00000208111.1	lincRNA	chr7:83178812-83179368
chr7	83201401	83201607	-	MER20	DNA	hAT-Charlie	chr7	83201585	83201587	-	ENSMUST00000207572.1,ENSMUSG00000108861.1	5930435M05Rik	ENSMUSG00000108861.1	ENSMUST00000207572.1	lincRNA	chr7:83197875-83201586
chr7	83356533	83356968	+	RLTR16	LTR	ERVK	chr7	83356576	83356578	-	ENSMUST00000208251.1,ENSMUSG00000109506.1	Gm44724	ENSMUSG00000109506.1	ENSMUST00000208251.1	lincRNA	chr7:83327738-83356577
chr7	83356533	83356968	+	RLTR16	LTR	ERVK	chr7	83356576	83356578	-	ENSMUST00000207119.1,ENSMUSG00000109506.1	Gm44724	ENSMUSG00000109506.1	ENSMUST00000207119.1	lincRNA	chr7:83336165-83356577
chr7	83783319	83788471	+	L1Md_T	LINE	L1	chr7	83784011	83784013	-	ENSMUST00000208785.1,ENSMUSG00000011154.17	Cfap161	ENSMUSG00000011154.17	ENSMUST00000208785.1	protein_coding	chr7:83775619-83784012
chr7	83814546	83814760	-	L1ME2	LINE	L1	chr7	83814706	83814708	+	ENSMUST00000207602.1,ENSMUSG00000109450.1	Gm39043	ENSMUSG00000109450.1	ENSMUST00000207602.1	lincRNA	chr7:83814707-83838345
chr7	84151613	84151698	+	GC_rich	Low_complexity	Low_complexity	chr7	84151669	84151671	-	ENSMUST00000208271.1,ENSMUSG00000038459.10	Abhd17c	ENSMUSG00000038459.10	ENSMUST00000208271.1	protein_coding	chr7:84149091-84151670
chr7	84170564	84170724	+	U1	snRNA	snRNA	chr7	84170564	84170566	+	ENSMUST00000175002.1,ENSMUSG00000092743.1	Gm22177	ENSMUSG00000092743.1	ENSMUST00000175002.1	snRNA	chr7:84170565-84170722
chr7	84232862	84233169	+	ORR1E	LTR	ERVL-MaLR	chr7	84232918	84232920	-	ENSMUST00000207963.1,ENSMUSG00000109091.1	Gm44827	ENSMUSG00000109091.1	ENSMUST00000207963.1	lincRNA	chr7:84226829-84232919
chr7	84323308	84323415	-	U6	snRNA	snRNA	chr7	84323414	84323416	-	ENSMUST00000083293.1,ENSMUSG00000065227.1	Gm25790	ENSMUSG00000065227.1	ENSMUST00000083293.1	snRNA	chr7:84323309-84323415
chr7	84409937	84409970	+	GC_rich	Low_complexity	Low_complexity	chr7	84409962	84409964	-	ENSMUST00000208995.1,ENSMUSG00000015709.9	Arnt2	ENSMUSG00000015709.9	ENSMUST00000208995.1	protein_coding	chr7:84310945-84409963
chr7	84554050	84554423	-	L1Md_F3	LINE	L1	chr7	84554186	84554188	+	ENSMUST00000208884.1,ENSMUSG00000109422.1	Gm45174	ENSMUSG00000109422.1	ENSMUST00000208884.1	TEC	chr7:84554187-84557251
chr7	85500030	85504814	+	L1Md_F2	LINE	L1	chr7	85501296	85501298	+	ENSMUST00000207236.1,ENSMUSG00000108857.1	Gm44578	ENSMUSG00000108857.1	ENSMUST00000207236.1	processed_pseudogene	chr7:85501297-85505131
chr7	85562115	85563427	+	L1_Mus1	LINE	L1	chr7	85563086	85563088	+	ENSMUST00000208545.2,ENSMUSG00000091205.3	Vmn2r71	ENSMUSG00000091205.3	ENSMUST00000208545.2	protein_coding	chr7:85563087-85621440
chr7	85572512	85574768	-	L1_Mur1	LINE	L1	chr7	85574613	85574615	+	ENSMUST00000208273.1,ENSMUSG00000091205.3	Vmn2r71	ENSMUSG00000091205.3	ENSMUST00000208273.1	protein_coding	chr7:85574614-85621275
chr7	85816184	85816360	+	L1_Mus3	LINE	L1	chr7	85816184	85816186	-	ENSMUST00000173876.1,ENSMUSG00000092307.1	Vmn2r-ps76	ENSMUSG00000092307.1	ENSMUST00000173876.1	unprocessed_pseudogene	chr7:85815447-85816185
chr7	87118192	87119074	+	RMER13B	LTR	ERVK	chr7	87118866	87118868	+	ENSMUST00000208879.1,ENSMUSG00000109334.1	Gm44925	ENSMUSG00000109334.1	ENSMUST00000208879.1	TEC	chr7:87118867-87120976
chr7	87772524	87772786	+	L1_Mus3	LINE	L1	chr7	87772566	87772568	+	ENSMUST00000207898.1,ENSMUSG00000108983.1	Gm44926	ENSMUSG00000108983.1	ENSMUST00000207898.1	TEC	chr7:87772567-87774392
chr7	87890319	87890888	-	MT2B2	LTR	ERVL	chr7	87890748	87890750	+	ENSMUST00000207573.1,ENSMUSG00000108893.1	Gm44927	ENSMUSG00000108893.1	ENSMUST00000207573.1	TEC	chr7:87890749-87891464
chr7	88059419	88065658	-	L1Md_F2	LINE	L1	chr7	88063060	88063062	+	ENSMUST00000207808.1,ENSMUSG00000109461.1	Gm44848	ENSMUSG00000109461.1	ENSMUST00000207808.1	TEC	chr7:88063061-88066294
chr7	88087050	88087765	-	RLTR25B	LTR	ERVK	chr7	88087250	88087252	-	ENSMUST00000157322.1,ENSMUSG00000087947.1	Gm24249	ENSMUSG00000087947.1	ENSMUST00000157322.1	snRNA	chr7:88087188-88087251
chr7	88283529	88283572	+	AT_rich	Low_complexity	Low_complexity	chr7	88283528	88283530	-	ENSMUST00000181565.1,ENSMUSG00000097423.1	Gm26522	ENSMUSG00000097423.1	ENSMUST00000181565.1	lincRNA	chr7:88278787-88283529
chr7	88311390	88311503	-	B1_Mur2	SINE	Alu	chr7	88311477	88311479	+	ENSMUST00000208302.1,ENSMUSG00000109244.1	Gm44751	ENSMUSG00000109244.1	ENSMUST00000208302.1	lincRNA	chr7:88311478-88315864
chr7	88864288	88870380	+	L1Md_F2	LINE	L1	chr7	88864891	88864893	-	ENSMUST00000207473.1,ENSMUSG00000109278.1	Gm45144	ENSMUSG00000109278.1	ENSMUST00000207473.1	lincRNA	chr7:88853043-88864892
chr7	89145335	89145536	-	MER5C	DNA	hAT-Charlie	chr7	89145496	89145498	-	ENSMUST00000207335.1,ENSMUSG00000039428.11	Tmem135	ENSMUSG00000039428.11	ENSMUST00000207335.1	protein_coding	chr7:89143940-89145497
chr7	89159507	89159876	-	RLTR10	LTR	ERVK	chr7	89159616	89159618	-	ENSMUST00000136267.7,ENSMUSG00000039428.11	Tmem135	ENSMUSG00000039428.11	ENSMUST00000136267.7	protein_coding	chr7:89154127-89159617
chr7	89290988	89291509	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	89291298	89291300	-	ENSMUST00000180212.1,ENSMUSG00000094780.1	Gm24659	ENSMUSG00000094780.1	ENSMUST00000180212.1	miRNA	chr7:89291190-89291299
chr7	89295553	89296074	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	89295863	89295865	-	ENSMUST00000179283.1,ENSMUSG00000096631.1	Gm22171	ENSMUSG00000096631.1	ENSMUST00000179283.1	miRNA	chr7:89295755-89295864
chr7	89391247	89391327	-	ID4_	SINE	ID	chr7	89391322	89391324	-	ENSMUST00000208787.1,ENSMUSG00000109199.1	Gm44996	ENSMUSG00000109199.1	ENSMUST00000208787.1	TEC	chr7:89388344-89391323
chr7	89827111	89827442	+	RLTR28	LTR	ERVL	chr7	89827217	89827219	+	ENSMUST00000207900.1,ENSMUSG00000109150.1	Gm45793	ENSMUSG00000109150.1	ENSMUST00000207900.1	TEC	chr7:89827218-89828559
chr7	90129939	90129974	+	GC_rich	Low_complexity	Low_complexity	chr7	90129939	90129941	-	ENSMUST00000209166.1,ENSMUSG00000097162.2	2310010J17Rik	ENSMUSG00000097162.2	ENSMUST00000209166.1	bidirectional_promoter_lncRNA	chr7:90124831-90129940
chr7	90132478	90132571	-	B1F	SINE	Alu	chr7	90132491	90132493	+	ENSMUST00000207037.1,ENSMUSG00000109429.1	Gm45223	ENSMUSG00000109429.1	ENSMUST00000207037.1	TEC	chr7:90132492-90137629
chr7	90185536	90186068	-	RLTR20B2	LTR	ERVK	chr7	90185926	90185928	+	ENSMUST00000207822.1,ENSMUSG00000109005.1	Gm45221	ENSMUSG00000109005.1	ENSMUST00000207822.1	TEC	chr7:90185927-90188198
chr7	90193089	90193204	-	B1F	SINE	Alu	chr7	90193098	90193100	+	ENSMUST00000207106.1,ENSMUSG00000039361.11	Picalm	ENSMUSG00000039361.11	ENSMUST00000207106.1	protein_coding	chr7:90193099-90194971
chr7	90293733	90293826	+	5S	rRNA	rRNA	chr7	90293733	90293735	+	ENSMUST00000122531.1,ENSMUSG00000084480.1	n-R5s155	ENSMUSG00000084480.1	ENSMUST00000122531.1	rRNA	chr7:90293734-90293846
chr7	90397904	90398967	-	Lx8	LINE	L1	chr7	90398217	90398219	+	ENSMUST00000189194.1,ENSMUSG00000030616.15	Sytl2	ENSMUSG00000030616.15	ENSMUST00000189194.1	protein_coding	chr7:90398218-90410439
chr7	90443535	90443679	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	90443668	90443670	+	ENSMUST00000107206.2,ENSMUSG00000051451.6	Crebzf	ENSMUSG00000051451.6	ENSMUST00000107206.2	protein_coding	chr7:90443669-90445818
chr7	90443535	90443679	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	90443669	90443671	+	ENSMUST00000126041.1,ENSMUSG00000051451.6	Crebzf	ENSMUSG00000051451.6	ENSMUST00000126041.1	protein_coding	chr7:90443670-90444701
chr7	90443535	90443679	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	90443677	90443679	+	ENSMUST00000143408.2,ENSMUSG00000051451.6	Crebzf	ENSMUSG00000051451.6	ENSMUST00000143408.2	protein_coding	chr7:90443678-90446104
chr7	90870671	90871666	+	L1Md_T	LINE	L1	chr7	90871602	90871604	+	ENSMUST00000208672.1,ENSMUSG00000109242.1	A930002H02Rik	ENSMUSG00000109242.1	ENSMUST00000208672.1	TEC	chr7:90871603-90872780
chr7	90994977	90995890	-	MLTR25A	LTR	ERVK	chr7	90995308	90995310	+	ENSMUST00000207744.1,ENSMUSG00000109562.1	Gm45178	ENSMUSG00000109562.1	ENSMUST00000207744.1	TEC	chr7:90995309-90999418
chr7	91139951	91140008	+	(TG)n	Simple_repeat	Simple_repeat	chr7	91139963	91139965	+	ENSMUST00000209104.1,ENSMUSG00000108819.1	Gm45177	ENSMUSG00000108819.1	ENSMUST00000209104.1	TEC	chr7:91139964-91142270
chr7	91158584	91158625	+	(TG)n	Simple_repeat	Simple_repeat	chr7	91158599	91158601	+	ENSMUST00000207579.1,ENSMUSG00000109387.1	Gm45182	ENSMUSG00000109387.1	ENSMUST00000207579.1	TEC	chr7:91158600-91161003
chr7	91242544	91243024	-	L1_Mus1	LINE	L1	chr7	91242994	91242996	+	ENSMUST00000158646.1,ENSMUSG00000089271.1	Gm24552	ENSMUSG00000089271.1	ENSMUST00000158646.1	snRNA	chr7:91242995-91243097
chr7	91303339	91304709	-	L1_Mm	LINE	L1	chr7	91304694	91304696	+	ENSMUST00000207937.1,ENSMUSG00000109353.1	Gm45183	ENSMUSG00000109353.1	ENSMUST00000207937.1	TEC	chr7:91304695-91306191
chr7	91339959	91340075	+	MIRb	SINE	MIR	chr7	91340015	91340017	+	ENSMUST00000207828.1,ENSMUSG00000108920.1	Gm44678	ENSMUSG00000108920.1	ENSMUST00000207828.1	TEC	chr7:91340016-91342790
chr7	91392612	91392689	-	U6	snRNA	snRNA	chr7	91392688	91392690	-	ENSMUST00000157591.1,ENSMUSG00000088216.1	Gm22080	ENSMUSG00000088216.1	ENSMUST00000157591.1	snRNA	chr7:91392584-91392689
chr7	91564312	91564376	+	(TC)n	Simple_repeat	Simple_repeat	chr7	91564366	91564368	+	ENSMUST00000208188.1,ENSMUSG00000109370.1	Gm44675	ENSMUSG00000109370.1	ENSMUST00000208188.1	TEC	chr7:91564367-91567293
chr7	91608954	91608995	+	(T)n	Simple_repeat	Simple_repeat	chr7	91608955	91608957	+	ENSMUST00000208520.1,ENSMUSG00000109217.1	Gm44676	ENSMUSG00000109217.1	ENSMUST00000208520.1	TEC	chr7:91608956-91612010
chr7	91647692	91647713	+	(T)n	Simple_repeat	Simple_repeat	chr7	91647710	91647712	+	ENSMUST00000208447.1,ENSMUSG00000109256.1	Gm44681	ENSMUSG00000109256.1	ENSMUST00000208447.1	TEC	chr7:91647711-91648552
chr7	91908044	91908119	+	(GGAA)n	Simple_repeat	Simple_repeat	chr7	91908062	91908064	+	ENSMUST00000208444.1,ENSMUSG00000108953.1	Gm45129	ENSMUSG00000108953.1	ENSMUST00000208444.1	TEC	chr7:91908063-91910286
chr7	92061649	92062752	-	Lx9	LINE	L1	chr7	92062393	92062395	+	ENSMUST00000098308.3,ENSMUSG00000052572.17	Dlg2	ENSMUSG00000052572.17	ENSMUST00000098308.3	protein_coding	chr7:92062394-92445325
chr7	92063299	92065062	-	Lx2	LINE	L1	chr7	92064592	92064594	+	ENSMUST00000208051.1,ENSMUSG00000109191.1	Gm45131	ENSMUSG00000109191.1	ENSMUST00000208051.1	TEC	chr7:92064593-92067174
chr7	92082490	92082973	-	RMER15	LTR	ERVL	chr7	92082535	92082537	-	ENSMUST00000207844.1,ENSMUSG00000108826.1	4931412I15Rik	ENSMUSG00000108826.1	ENSMUST00000207844.1	TEC	chr7:92081089-92082536
chr7	92408152	92408537	-	L1M2c	LINE	L1	chr7	92408183	92408185	+	ENSMUST00000207479.1,ENSMUSG00000109574.1	B230206I08Rik	ENSMUSG00000109574.1	ENSMUST00000207479.1	TEC	chr7:92408184-92411374
chr7	92729827	92729968	-	B1_Mus2	SINE	Alu	chr7	92729839	92729841	+	ENSMUST00000182453.1,ENSMUSG00000098041.1	Gm26981	ENSMUSG00000098041.1	ENSMUST00000182453.1	lincRNA	chr7:92729840-92733748
chr7	92981530	92982151	+	RLTR26C_MM	LTR	ERVK	chr7	92982051	92982053	+	ENSMUST00000207656.1,ENSMUSG00000108994.1	Gm31663	ENSMUSG00000108994.1	ENSMUST00000207656.1	transcribed_unprocessed_pseudogene	chr7:92982052-93000818
chr7	93166985	93172355	+	L1Md_F2	LINE	L1	chr7	93168833	93168835	+	ENSMUST00000209049.1,ENSMUSG00000109196.1	Gm44715	ENSMUSG00000109196.1	ENSMUST00000209049.1	processed_pseudogene	chr7:93168834-93172672
chr7	93183630	93184558	-	RMER1A	Other	Other	chr7	93184175	93184177	-	ENSMUST00000133910.2,ENSMUSG00000087412.4	Gm15501	ENSMUSG00000087412.4	ENSMUST00000133910.2	transcribed_processed_pseudogene	chr7:93178983-93184176
chr7	93521374	93526581	+	L1Md_A	LINE	L1	chr7	93523059	93523061	+	ENSMUST00000207537.1,ENSMUSG00000109195.1	Gm45038	ENSMUSG00000109195.1	ENSMUST00000207537.1	processed_pseudogene	chr7:93523060-93526897
chr7	93565685	93565930	+	ORR1D1	LTR	ERVL-MaLR	chr7	93565694	93565696	-	ENSMUST00000208293.1,ENSMUSG00000109077.1	Gm8285	ENSMUSG00000109077.1	ENSMUST00000208293.1	processed_pseudogene	chr7:93564937-93565695
chr7	93660458	93660873	-	ORR1D1	LTR	ERVL-MaLR	chr7	93660554	93660556	-	ENSMUST00000208471.1,ENSMUSG00000109440.1	Bc1-ps1	ENSMUSG00000109440.1	ENSMUST00000208471.1	scRNA	chr7:93660238-93660555
chr7	94372016	94373013	-	RLTR10-int	LTR	ERVK	chr7	94372571	94372573	-	ENSMUST00000206678.1,ENSMUSG00000108315.1	Gm44601	ENSMUSG00000108315.1	ENSMUST00000206678.1	lincRNA	chr7:94368983-94372572
chr7	94475484	94475596	-	Lx7	LINE	L1	chr7	94475579	94475581	+	ENSMUST00000205948.1,ENSMUSG00000108516.1	Gm44602	ENSMUSG00000108516.1	ENSMUST00000205948.1	processed_pseudogene	chr7:94475580-94475711
chr7	95171738	95171866	-	Lx3_Mus	LINE	L1	chr7	95171863	95171865	+	ENSMUST00000122687.1,ENSMUSG00000084636.1	Gm23884	ENSMUSG00000084636.1	ENSMUST00000122687.1	misc_RNA	chr7:95171864-95172157
chr7	95442457	95442804	-	Lx8b	LINE	L1	chr7	95442456	95442458	-	ENSMUST00000083941.1,ENSMUSG00000065875.1	Gm25684	ENSMUSG00000065875.1	ENSMUST00000083941.1	snRNA	chr7:95442351-95442457
chr7	95474928	95475022	+	MER68	LTR	ERVL	chr7	95474945	95474947	+	ENSMUST00000206820.1,ENSMUSG00000108429.1	Gm44603	ENSMUSG00000108429.1	ENSMUST00000206820.1	processed_pseudogene	chr7:95474946-95475312
chr7	96249034	96249426	+	Tigger20a	DNA	TcMar-Tigger	chr7	96249423	96249425	+	ENSMUST00000102189.1,ENSMUSG00000076143.1	Mir708	ENSMUSG00000076143.1	ENSMUST00000102189.1	miRNA	chr7:96249424-96249532
chr7	96341834	96342181	-	MTD	LTR	ERVL-MaLR	chr7	96341963	96341965	-	ENSMUST00000137193.1,ENSMUSG00000085751.1	Gm15412	ENSMUSG00000085751.1	ENSMUST00000137193.1	antisense	chr7:96339483-96341964
chr7	96629066	96629133	+	MIR	SINE	MIR	chr7	96629068	96629070	-	ENSMUST00000155217.2,ENSMUSG00000085792.2	Gm15414	ENSMUSG00000085792.2	ENSMUST00000155217.2	antisense	chr7:96596652-96629069
chr7	96863296	96863380	-	5S	rRNA	rRNA	chr7	96863378	96863380	-	ENSMUST00000158634.1,ENSMUSG00000089259.1	Gm25712	ENSMUSG00000089259.1	ENSMUST00000158634.1	rRNA	chr7:96863287-96863379
chr7	96919993	96920102	-	U6	snRNA	snRNA	chr7	96920101	96920103	-	ENSMUST00000157355.1,ENSMUSG00000087980.1	Gm22226	ENSMUSG00000087980.1	ENSMUST00000157355.1	snRNA	chr7:96919994-96920102
chr7	96947023	96947338	-	RMER17B	LTR	ERVK	chr7	96947033	96947035	-	ENSMUST00000136294.2,ENSMUSG00000085560.2	C230038L03Rik	ENSMUSG00000085560.2	ENSMUST00000136294.2	processed_transcript	chr7:96906826-96947034
chr7	97037284	97038231	-	L1_Mur3	LINE	L1	chr7	97037600	97037602	+	ENSMUST00000206109.1,ENSMUSG00000018995.12	Nars2	ENSMUSG00000018995.12	ENSMUST00000206109.1	protein_coding	chr7:97037601-97040866
chr7	97315727	97316138	-	MTC	LTR	ERVL-MaLR	chr7	97315993	97315995	-	ENSMUST00000181651.2,ENSMUSG00000035713.15	Usp35	ENSMUSG00000035713.15	ENSMUST00000181651.2	protein_coding	chr7:97309406-97315994
chr7	97315727	97316138	-	MTC	LTR	ERVL-MaLR	chr7	97315994	97315996	-	ENSMUST00000180476.2,ENSMUSG00000035713.15	Usp35	ENSMUSG00000035713.15	ENSMUST00000180476.2	protein_coding	chr7:97312588-97315995
chr7	97390678	97390830	+	(GGAA)n	Simple_repeat	Simple_repeat	chr7	97390777	97390779	+	ENSMUST00000137105.2,ENSMUSG00000035704.17	Alg8	ENSMUSG00000035704.17	ENSMUST00000137105.2	protein_coding	chr7:97390778-97391893
chr7	97406114	97406149	-	RMER4B	LTR	ERVK	chr7	97406139	97406141	+	ENSMUST00000120511.1,ENSMUSG00000083974.1	Gm16053	ENSMUSG00000083974.1	ENSMUST00000120511.1	processed_pseudogene	chr7:97406140-97406327
chr7	97450746	97451437	+	RLTR49	LTR	ERVK	chr7	97451322	97451324	+	ENSMUST00000206658.1,ENSMUSG00000051727.14	Kctd14	ENSMUSG00000051727.14	ENSMUST00000206658.1	protein_coding	chr7:97451323-97459557
chr7	97530106	97530340	-	Lx8	LINE	L1	chr7	97530153	97530155	+	ENSMUST00000205387.1,ENSMUSG00000025133.9	Ints4	ENSMUSG00000025133.9	ENSMUST00000205387.1	protein_coding	chr7:97530154-97535243
chr7	97575561	97575706	+	ID_B1	SINE	B4	chr7	97575652	97575654	-	ENSMUST00000178078.7,ENSMUSG00000035642.16	Aamdc	ENSMUSG00000035642.16	ENSMUST00000178078.7	protein_coding	chr7:97550331-97575653
chr7	97575561	97575706	+	ID_B1	SINE	B4	chr7	97575652	97575654	-	ENSMUST00000042627.15,ENSMUSG00000035642.16	Aamdc	ENSMUSG00000035642.16	ENSMUST00000042627.15	protein_coding	chr7:97550331-97575653
chr7	97579905	97579953	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	97579906	97579908	+	ENSMUST00000127891.2,ENSMUSG00000035623.14	Rsf1	ENSMUSG00000035623.14	ENSMUST00000127891.2	protein_coding	chr7:97579907-97639463
chr7	97657261	97657412	-	B1_Mus2	SINE	Alu	chr7	97657279	97657281	+	ENSMUST00000206866.1,ENSMUSG00000035623.14	Rsf1	ENSMUSG00000035623.14	ENSMUST00000206866.1	protein_coding	chr7:97657280-97660914
chr7	97669436	97669517	+	B1F1	SINE	Alu	chr7	97669491	97669493	+	ENSMUST00000150288.6,ENSMUSG00000035623.14	Rsf1	ENSMUSG00000035623.14	ENSMUST00000150288.6	protein_coding	chr7:97669492-97676180
chr7	97717792	97717938	+	B1_Mus2	SINE	Alu	chr7	97717794	97717796	+	ENSMUST00000205667.1,ENSMUSG00000025439.5	Clns1a	ENSMUSG00000025439.5	ENSMUST00000205667.1	protein_coding	chr7:97717795-97720796
chr7	97729319	97729594	+	B4A	SINE	B4	chr7	97729387	97729389	-	ENSMUST00000205784.1,ENSMUSG00000042797.9	Aqp11	ENSMUSG00000042797.9	ENSMUST00000205784.1	protein_coding	chr7:97726547-97729388
chr7	97730488	97730791	+	MLT1H	LTR	ERVL-MaLR	chr7	97730504	97730506	-	ENSMUST00000205932.1,ENSMUSG00000042797.9	Aqp11	ENSMUSG00000042797.9	ENSMUST00000205932.1	protein_coding	chr7:97729051-97730505
chr7	97733102	97733248	+	RSINE1	SINE	B4	chr7	97733226	97733228	-	ENSMUST00000205737.1,ENSMUSG00000042797.9	Aqp11	ENSMUSG00000042797.9	ENSMUST00000205737.1	protein_coding	chr7:97727430-97733227
chr7	98103310	98103398	+	(CACG)n	Simple_repeat	Simple_repeat	chr7	98103360	98103362	-	ENSMUST00000155637.7,ENSMUSG00000030761.15	Myo7a	ENSMUSG00000030761.15	ENSMUST00000155637.7	protein_coding	chr7:98098207-98103361
chr7	98103310	98103398	+	(CACG)n	Simple_repeat	Simple_repeat	chr7	98103356	98103358	-	ENSMUST00000149079.1,ENSMUSG00000030761.15	Myo7a	ENSMUSG00000030761.15	ENSMUST00000149079.1	protein_coding	chr7:98098247-98103357
chr7	98162203	98162274	-	MIR	SINE	MIR	chr7	98162209	98162211	-	ENSMUST00000134638.1,ENSMUSG00000035547.14	Capn5	ENSMUSG00000035547.14	ENSMUST00000134638.1	protein_coding	chr7:98145516-98162210
chr7	98164872	98165039	+	B3	SINE	B2	chr7	98164961	98164963	-	ENSMUST00000155056.1,ENSMUSG00000035547.14	Capn5	ENSMUSG00000035547.14	ENSMUST00000155056.1	protein_coding	chr7:98161981-98164962
chr7	98471243	98471550	-	RLTR51A_Mm	LTR	ERVK?	chr7	98471532	98471534	+	ENSMUST00000206524.1,ENSMUSG00000074003.4	Gucy2d	ENSMUSG00000074003.4	ENSMUST00000206524.1	protein_coding	chr7:98471533-98477478
chr7	98506953	98507117	+	U1	snRNA	snRNA	chr7	98506953	98506955	+	ENSMUST00000083869.1,ENSMUSG00000065803.1	Gm23040	ENSMUSG00000065803.1	ENSMUST00000083869.1	snRNA	chr7:98506954-98507116
chr7	98703286	98703336	+	GC_rich	Low_complexity	Low_complexity	chr7	98703327	98703329	+	ENSMUST00000153566.1,ENSMUSG00000030753.15	Thap12	ENSMUSG00000030753.15	ENSMUST00000153566.1	protein_coding	chr7:98703328-98715113
chr7	98904949	98905141	+	LTR79	LTR	ERVL	chr7	98905086	98905088	+	ENSMUST00000207697.1,ENSMUSG00000109130.1	Gm45187	ENSMUSG00000109130.1	ENSMUST00000207697.1	antisense	chr7:98905087-98908055
chr7	99202358	99202525	-	MIR	SINE	MIR	chr7	99202365	99202367	+	ENSMUST00000208323.1,ENSMUSG00000109052.1	Gm45012	ENSMUSG00000109052.1	ENSMUST00000208323.1	antisense	chr7:99202366-99227080
chr7	99321122	99321237	-	L2b	LINE	L2	chr7	99321199	99321201	+	ENSMUST00000129058.1,ENSMUSG00000109460.1	Gm45591	ENSMUSG00000109460.1	ENSMUST00000129058.1	sense_intronic	chr7:99321200-99322455
chr7	99535627	99535696	+	G-rich	Low_complexity	Low_complexity	chr7	99535661	99535663	+	ENSMUST00000032995.14,ENSMUSG00000018909.15	Arrb1	ENSMUSG00000018909.15	ENSMUST00000032995.14	protein_coding	chr7:99535662-99603574
chr7	99858776	99858875	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	99858858	99858860	-	ENSMUST00000208477.1,ENSMUSG00000035227.7	Spcs2	ENSMUSG00000035227.7	ENSMUST00000208477.1	protein_coding	chr7:99838903-99858859
chr7	99889236	99889392	+	L1M4c	LINE	L1	chr7	99889357	99889359	-	ENSMUST00000207760.1,ENSMUSG00000109002.1	Gm38405	ENSMUSG00000109002.1	ENSMUST00000207760.1	antisense	chr7:99870666-99889358
chr7	99889236	99889392	+	L1M4c	LINE	L1	chr7	99889334	99889336	-	ENSMUST00000208548.1,ENSMUSG00000109002.1	Gm38405	ENSMUSG00000109002.1	ENSMUST00000208548.1	antisense	chr7:99875239-99889335
chr7	100006154	100006188	+	GC_rich	Low_complexity	Low_complexity	chr7	100006171	100006173	+	ENSMUST00000207641.1,ENSMUSG00000030732.13	Chrdl2	ENSMUSG00000030732.13	ENSMUST00000207641.1	protein_coding	chr7:100006172-100008347
chr7	100089912	100090040	+	B1_Mus1	SINE	Alu	chr7	100090036	100090038	-	ENSMUST00000156518.1,ENSMUSG00000030726.16	Pold3	ENSMUSG00000030726.16	ENSMUST00000156518.1	protein_coding	chr7:100083662-100090037
chr7	100093601	100093735	-	PB1D9	SINE	Alu	chr7	100093663	100093665	-	ENSMUST00000130413.7,ENSMUSG00000030726.16	Pold3	ENSMUSG00000030726.16	ENSMUST00000130413.7	protein_coding	chr7:100083583-100093664
chr7	100285450	100285524	+	G-rich	Low_complexity	Low_complexity	chr7	100285519	100285521	+	ENSMUST00000057023.11,ENSMUSG00000051048.17	P4ha3	ENSMUSG00000051048.17	ENSMUST00000057023.11	protein_coding	chr7:100285520-100319699
chr7	100285450	100285524	+	G-rich	Low_complexity	Low_complexity	chr7	100285519	100285521	+	ENSMUST00000139790.7,ENSMUSG00000051048.17	P4ha3	ENSMUSG00000051048.17	ENSMUST00000139790.7	protein_coding	chr7:100285520-100319699
chr7	100300882	100301766	-	RMER17A2	LTR	ERVK	chr7	100301580	100301582	+	ENSMUST00000208565.1,ENSMUSG00000051048.17	P4ha3	ENSMUSG00000051048.17	ENSMUST00000208565.1	protein_coding	chr7:100301581-100319237
chr7	100367513	100367614	+	B1_Mus2	SINE	Alu	chr7	100367587	100367589	-	ENSMUST00000207092.1,ENSMUSG00000030718.9	Ppme1	ENSMUSG00000030718.9	ENSMUST00000207092.1	protein_coding	chr7:100338404-100367588
chr7	100420392	100420566	-	B3	SINE	B2	chr7	100420504	100420506	+	ENSMUST00000184753.1,ENSMUSG00000047248.20	C2cd3	ENSMUSG00000047248.20	ENSMUST00000184753.1	protein_coding	chr7:100420505-100423080
chr7	100428969	100429124	-	B3A	SINE	B2	chr7	100429121	100429123	+	ENSMUST00000185051.1,ENSMUSG00000047248.20	C2cd3	ENSMUSG00000047248.20	ENSMUST00000185051.1	protein_coding	chr7:100429122-100432295
chr7	100464179	100464362	-	B3	SINE	B2	chr7	100464210	100464212	+	ENSMUST00000151573.2,ENSMUSG00000047248.20	C2cd3	ENSMUSG00000047248.20	ENSMUST00000151573.2	protein_coding	chr7:100464211-100470152
chr7	100543005	100543341	-	ORR1F	LTR	ERVL-MaLR	chr7	100543179	100543181	-	ENSMUST00000209160.1,ENSMUSG00000109123.1	Gm39059	ENSMUSG00000109123.1	ENSMUST00000209160.1	lincRNA	chr7:100542338-100543180
chr7	100607682	100607708	+	(CACG)n	Simple_repeat	Simple_repeat	chr7	100607689	100607691	+	ENSMUST00000098252.4,ENSMUSG00000030704.14	Rab6a	ENSMUSG00000030704.14	ENSMUST00000098252.4	protein_coding	chr7:100607690-100641268
chr7	100634166	100634370	+	B3	SINE	B2	chr7	100634347	100634349	+	ENSMUST00000123960.1,ENSMUSG00000030704.14	Rab6a	ENSMUSG00000030704.14	ENSMUST00000123960.1	protein_coding	chr7:100634348-100639363
chr7	100856249	100856419	+	L2b	LINE	L2	chr7	100856301	100856303	-	ENSMUST00000139604.7,ENSMUSG00000008318.10	Relt	ENSMUSG00000008318.10	ENSMUST00000139604.7	protein_coding	chr7:100851112-100856302
chr7	101190227	101190363	-	B1_Mur3	SINE	Alu	chr7	101190242	101190244	+	ENSMUST00000208063.1,ENSMUSG00000030691.15	Fchsd2	ENSMUSG00000030691.15	ENSMUST00000208063.1	protein_coding	chr7:101190243-101192430
chr7	101237791	101238222	+	L1M4	LINE	L1	chr7	101238217	101238219	+	ENSMUST00000213690.1,ENSMUSG00000111425.1	Gm47324	ENSMUSG00000111425.1	ENSMUST00000213690.1	processed_pseudogene	chr7:101238218-101239278
chr7	101250664	101250844	-	B2_Mm2	SINE	B2	chr7	101250841	101250843	+	ENSMUST00000208638.1,ENSMUSG00000030691.15	Fchsd2	ENSMUSG00000030691.15	ENSMUST00000208638.1	protein_coding	chr7:101250842-101253847
chr7	101326200	101326258	+	MIR3	SINE	MIR	chr7	101326230	101326232	-	ENSMUST00000172644.2,ENSMUSG00000092364.2	Gm20476	ENSMUSG00000092364.2	ENSMUST00000172644.2	antisense	chr7:101317724-101326231
chr7	101394639	101394730	+	CT-rich	Low_complexity	Low_complexity	chr7	101394654	101394656	+	ENSMUST00000155754.1,ENSMUSG00000032812.18	Arap1	ENSMUSG00000032812.18	ENSMUST00000155754.1	protein_coding	chr7:101394655-101396131
chr7	101857021	101857385	-	ORR1C2	LTR	ERVL-MaLR	chr7	101857193	101857195	-	ENSMUST00000210598.1,ENSMUSG00000032725.10	Folr2	ENSMUSG00000032725.10	ENSMUST00000210598.1	protein_coding	chr7:101839990-101857194
chr7	101867371	101867490	+	B1_Mur3	SINE	Alu	chr7	101867406	101867408	-	ENSMUST00000106982.7,ENSMUSG00000001827.12	Folr1	ENSMUSG00000001827.12	ENSMUST00000106982.7	protein_coding	chr7:101858331-101867407
chr7	101869525	101869560	+	ID_B1	SINE	B4	chr7	101869550	101869552	-	ENSMUST00000140068.7,ENSMUSG00000001827.12	Folr1	ENSMUSG00000001827.12	ENSMUST00000140068.7	protein_coding	chr7:101859104-101869551
chr7	101869538	101869612	+	ID4_	SINE	ID	chr7	101869550	101869552	-	ENSMUST00000140068.7,ENSMUSG00000001827.12	Folr1	ENSMUSG00000001827.12	ENSMUST00000140068.7	protein_coding	chr7:101859104-101869551
chr7	101881132	101881285	+	B1_Mur4	SINE	Alu	chr7	101881183	101881185	+	ENSMUST00000174949.2,ENSMUSG00000093388.1	Gm22655	ENSMUSG00000093388.1	ENSMUST00000174949.2	miRNA	chr7:101881184-101881279
chr7	101897658	101897833	-	MIRb	SINE	MIR	chr7	101897731	101897733	+	ENSMUST00000098237.8,ENSMUSG00000030649.18	Anapc15	ENSMUSG00000030649.18	ENSMUST00000098237.8	protein_coding	chr7:101897732-101901845
chr7	101897658	101897833	-	MIRb	SINE	MIR	chr7	101897794	101897796	+	ENSMUST00000178851.1,ENSMUSG00000030649.18	Anapc15	ENSMUSG00000030649.18	ENSMUST00000178851.1	protein_coding	chr7:101897795-101901639
chr7	101921113	101921225	-	MIR3	SINE	MIR	chr7	101921211	101921213	-	ENSMUST00000106968.7,ENSMUSG00000064307.13	Lrrc51	ENSMUSG00000064307.13	ENSMUST00000106968.7	protein_coding	chr7:101912984-101921212
chr7	101921113	101921225	-	MIR3	SINE	MIR	chr7	101921224	101921226	-	ENSMUST00000106967.7,ENSMUSG00000064307.13	Lrrc51	ENSMUSG00000064307.13	ENSMUST00000106967.7	protein_coding	chr7:101912989-101921225
chr7	101921113	101921225	-	MIR3	SINE	MIR	chr7	101921198	101921200	-	ENSMUST00000106965.7,ENSMUSG00000064307.13	Lrrc51	ENSMUSG00000064307.13	ENSMUST00000106965.7	protein_coding	chr7:101912990-101921199
chr7	101921113	101921225	-	MIR3	SINE	MIR	chr7	101921182	101921184	-	ENSMUST00000098236.8,ENSMUSG00000064307.13	Lrrc51	ENSMUSG00000064307.13	ENSMUST00000098236.8	protein_coding	chr7:101912994-101921183
chr7	101946508	101946661	-	B2_Mm2	SINE	B2	chr7	101946512	101946514	-	ENSMUST00000211386.1,ENSMUSG00000110150.1	Gm8523	ENSMUSG00000110150.1	ENSMUST00000211386.1	processed_pseudogene	chr7:101945962-101946513
chr7	102024454	102024504	-	MTE2b	LTR	ERVL-MaLR	chr7	102024468	102024470	-	ENSMUST00000149976.1,ENSMUSG00000070426.12	Rnf121	ENSMUSG00000070426.12	ENSMUST00000149976.1	protein_coding	chr7:102020433-102024469
chr7	102060467	102060610	+	B1_Mus2	SINE	Alu	chr7	102060475	102060477	-	ENSMUST00000106953.7,ENSMUSG00000070426.12	Rnf121	ENSMUSG00000070426.12	ENSMUST00000106953.7	protein_coding	chr7:102020132-102060476
chr7	102080965	102081093	-	B1_Mus2	SINE	Alu	chr7	102081057	102081059	+	ENSMUST00000140395.2,ENSMUSG00000099481.6	Xndc1	ENSMUSG00000099481.6	ENSMUST00000140395.2	protein_coding	chr7:102081058-102082591
chr7	102080965	102081093	-	B1_Mus2	SINE	Alu	chr7	102081060	102081062	+	ENSMUST00000143839.1,ENSMUSG00000099481.6	Xndc1	ENSMUSG00000099481.6	ENSMUST00000143839.1	protein_coding	chr7:102081061-102082521
chr7	102109469	102109563	+	MIRc	SINE	MIR	chr7	102109488	102109490	-	ENSMUST00000211553.1,ENSMUSG00000070424.12	Art5	ENSMUSG00000070424.12	ENSMUST00000211553.1	protein_coding	chr7:102099903-102109489
chr7	102210087	102210122	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	102210119	102210121	-	ENSMUST00000070165.6,ENSMUSG00000063550.8	Nup98	ENSMUSG00000063550.8	ENSMUST00000070165.6	protein_coding	chr7:102134203-102210120
chr7	102210302	102210383	+	G-rich	Low_complexity	Low_complexity	chr7	102210334	102210336	+	ENSMUST00000140631.1,ENSMUSG00000030990.18	Pgap2	ENSMUSG00000030990.18	ENSMUST00000140631.1	protein_coding	chr7:102210335-102226385
chr7	102210302	102210383	+	G-rich	Low_complexity	Low_complexity	chr7	102210361	102210363	+	ENSMUST00000120879.7,ENSMUSG00000030990.18	Pgap2	ENSMUSG00000030990.18	ENSMUST00000120879.7	protein_coding	chr7:102210362-102238567
chr7	102210302	102210383	+	G-rich	Low_complexity	Low_complexity	chr7	102210371	102210373	+	ENSMUST00000146996.7,ENSMUSG00000030990.18	Pgap2	ENSMUSG00000030990.18	ENSMUST00000146996.7	protein_coding	chr7:102210372-102226445
chr7	102250054	102250090	+	GC_rich	Low_complexity	Low_complexity	chr7	102250087	102250089	-	ENSMUST00000106923.1,ENSMUSG00000073982.11	Rhog	ENSMUSG00000073982.11	ENSMUST00000106923.1	protein_coding	chr7:102239123-102250088
chr7	102255959	102256159	+	B3	SINE	B2	chr7	102256053	102256055	-	ENSMUST00000209968.1,ENSMUSG00000073982.11	Rhog	ENSMUSG00000073982.11	ENSMUST00000209968.1	protein_coding	chr7:102239994-102256054
chr7	102565486	102565611	+	GA-rich	Low_complexity	Low_complexity	chr7	102565485	102565487	-	ENSMUST00000033264.11,ENSMUSG00000030966.13	Trim21	ENSMUSG00000030966.13	ENSMUST00000033264.11	protein_coding	chr7:102557921-102565486
chr7	102734704	102735013	+	IAPLTR2b	LTR	ERVK	chr7	102734713	102734715	-	ENSMUST00000158263.1,ENSMUSG00000088888.1	Gm24210	ENSMUSG00000088888.1	ENSMUST00000158263.1	snoRNA	chr7:102734582-102734714
chr7	103028980	103029129	-	MTC	LTR	ERVL-MaLR	chr7	103029092	103029094	+	ENSMUST00000209214.1,ENSMUSG00000109845.1	Olfr581-ps1	ENSMUSG00000109845.1	ENSMUST00000209214.1	unprocessed_pseudogene	chr7:103029093-103029648
chr7	103184335	103184882	+	L1_Mus3	LINE	L1	chr7	103184802	103184804	+	ENSMUST00000106893.2,ENSMUSG00000073956.3	Olfr592	ENSMUSG00000073956.3	ENSMUST00000106893.2	protein_coding	chr7:103184803-103192965
chr7	103260769	103261256	-	MT2_Mm	LTR	ERVL	chr7	103261002	103261004	-	ENSMUST00000116926.1,ENSMUSG00000095000.1	Gm25171	ENSMUSG00000095000.1	ENSMUST00000116926.1	miRNA	chr7:103260883-103261003
chr7	103267001	103267435	-	MT2_Mm	LTR	ERVL	chr7	103267234	103267236	-	ENSMUST00000179003.1,ENSMUSG00000094572.1	Gm23550	ENSMUSG00000094572.1	ENSMUST00000179003.1	miRNA	chr7:103267115-103267235
chr7	103372411	103372538	-	ID_B1	SINE	B4	chr7	103372442	103372444	-	ENSMUST00000218213.1,ENSMUSG00000082739.3	Olfr602-ps1	ENSMUSG00000082739.3	ENSMUST00000218213.1	transcribed_unprocessed_pseudogene	chr7:103367520-103372443
chr7	103415552	103416039	+	MT2_Mm	LTR	ERVL	chr7	103415805	103415807	+	ENSMUST00000116717.1,ENSMUSG00000080367.1	Gm25774	ENSMUSG00000080367.1	ENSMUST00000116717.1	miRNA	chr7:103415806-103415926
chr7	103550099	103550898	-	L1Md_T	LINE	L1	chr7	103550367	103550369	+	ENSMUST00000106888.2,ENSMUSG00000078624.4	Olfr613	ENSMUSG00000078624.4	ENSMUST00000106888.2	protein_coding	chr7:103550368-103555506
chr7	103581055	103581576	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	103581266	103581268	+	ENSMUST00000179692.1,ENSMUSG00000096906.1	Gm26506	ENSMUSG00000096906.1	ENSMUST00000179692.1	miRNA	chr7:103581267-103581376
chr7	103642679	103642760	+	BLACKJACK	DNA	hAT-Blackjack	chr7	103642701	103642703	-	ENSMUST00000216570.1,ENSMUSG00000050085.5	Olfr622	ENSMUSG00000050085.5	ENSMUST00000216570.1	protein_coding	chr7:103638451-103642702
chr7	104203385	104203569	+	B3A	SINE	B2	chr7	104203436	104203438	+	ENSMUST00000121432.3,ENSMUSG00000081859.3	Olfr650-ps1	ENSMUSG00000081859.3	ENSMUST00000121432.3	polymorphic_pseudogene	chr7:104203437-104207865
chr7	104221120	104221177	+	B1_Mur2	SINE	Alu	chr7	104221171	104221173	+	ENSMUST00000153324.1,ENSMUSG00000072244.11	Trim6	ENSMUSG00000072244.11	ENSMUST00000153324.1	protein_coding	chr7:104221172-104226829
chr7	104340089	104340195	-	U6	snRNA	snRNA	chr7	104340188	104340190	-	ENSMUST00000184402.1,ENSMUSG00000098399.1	Gm27995	ENSMUSG00000098399.1	ENSMUST00000184402.1	snRNA	chr7:104340090-104340189
chr7	104358594	104358873	-	L1_Mus2	LINE	L1	chr7	104358645	104358647	-	ENSMUST00000209729.1,ENSMUSG00000052749.9	Trim30b	ENSMUSG00000052749.9	ENSMUST00000209729.1	protein_coding	chr7:104355398-104358646
chr7	104358594	104358873	-	L1_Mus2	LINE	L1	chr7	104358645	104358647	-	ENSMUST00000171830.1,ENSMUSG00000052749.9	Trim30b	ENSMUSG00000052749.9	ENSMUST00000171830.1	protein_coding	chr7:104355398-104358646
chr7	104358594	104358873	-	L1_Mus2	LINE	L1	chr7	104358642	104358644	-	ENSMUST00000155961.1,ENSMUSG00000052749.9	Trim30b	ENSMUSG00000052749.9	ENSMUST00000155961.1	protein_coding	chr7:104357584-104358643
chr7	104416792	104417144	-	RLTR10-int	LTR	ERVK	chr7	104416927	104416929	-	ENSMUST00000125762.1,ENSMUSG00000030921.17	Trim30a	ENSMUSG00000030921.17	ENSMUST00000125762.1	protein_coding	chr7:104411370-104416928
chr7	104423273	104423380	+	U6	snRNA	snRNA	chr7	104423273	104423275	+	ENSMUST00000082973.1,ENSMUSG00000064907.1	Gm25405	ENSMUSG00000064907.1	ENSMUST00000082973.1	snRNA	chr7:104423274-104423380
chr7	104535342	104535365	+	(GAAAA)n	Simple_repeat	Simple_repeat	chr7	104535360	104535362	-	ENSMUST00000147064.7,ENSMUSG00000073929.12	Trim30e-ps1	ENSMUSG00000073929.12	ENSMUST00000147064.7	transcribed_unprocessed_pseudogene	chr7:104532959-104535361
chr7	104867814	104868160	+	ORR1A1	LTR	ERVL-MaLR	chr7	104867992	104867994	+	ENSMUST00000210689.1,ENSMUSG00000109641.1	Gm45556	ENSMUSG00000109641.1	ENSMUST00000210689.1	lincRNA	chr7:104867993-104871766
chr7	105004595	105005121	+	RLTR25B	LTR	ERVK	chr7	105004628	105004630	-	ENSMUST00000210859.1,ENSMUSG00000110041.1	Olfr673-ps1	ENSMUSG00000110041.1	ENSMUST00000210859.1	unprocessed_pseudogene	chr7:105004219-105004629
chr7	105079653	105080310	+	L1MEc	LINE	L1	chr7	105080079	105080081	-	ENSMUST00000210004.1,ENSMUSG00000110293.1	Gm45557	ENSMUSG00000110293.1	ENSMUST00000210004.1	lincRNA	chr7:105078430-105080080
chr7	105109936	105114851	+	L1Md_T	LINE	L1	chr7	105110198	105110200	-	ENSMUST00000209384.1,ENSMUSG00000109742.1	Gm45558	ENSMUSG00000109742.1	ENSMUST00000209384.1	lincRNA	chr7:105108305-105110199
chr7	105204917	105205372	-	Lx3_Mus	LINE	L1	chr7	105205154	105205156	-	ENSMUST00000216613.1,ENSMUSG00000048425.3	Olfr686	ENSMUSG00000048425.3	ENSMUST00000216613.1	protein_coding	chr7:105201858-105205155
chr7	105400008	105400051	+	GC_rich	Low_complexity	Low_complexity	chr7	105400007	105400009	-	ENSMUST00000118726.7,ENSMUSG00000044465.19	Fam160a2	ENSMUSG00000044465.19	ENSMUST00000118726.7	protein_coding	chr7:105378611-105400008
chr7	105400008	105400051	+	GC_rich	Low_complexity	Low_complexity	chr7	105400010	105400012	-	ENSMUST00000074686.9,ENSMUSG00000044465.19	Fam160a2	ENSMUSG00000044465.19	ENSMUST00000074686.9	protein_coding	chr7:105378611-105400011
chr7	105400008	105400051	+	GC_rich	Low_complexity	Low_complexity	chr7	105400031	105400033	-	ENSMUST00000122327.6,ENSMUSG00000044465.19	Fam160a2	ENSMUSG00000044465.19	ENSMUST00000122327.6	protein_coding	chr7:105378612-105400032
chr7	105567192	105567337	+	LTR50	LTR	ERVL	chr7	105567293	105567295	-	ENSMUST00000186814.1,ENSMUSG00000037032.16	Apbb1	ENSMUSG00000037032.16	ENSMUST00000186814.1	protein_coding	chr7:105559468-105567294
chr7	105633454	105633570	+	C-rich	Low_complexity	Low_complexity	chr7	105633507	105633509	-	ENSMUST00000106791.7,ENSMUSG00000036989.16	Trim3	ENSMUSG00000036989.16	ENSMUST00000106791.7	protein_coding	chr7:105604463-105633508
chr7	105633454	105633570	+	C-rich	Low_complexity	Low_complexity	chr7	105633559	105633561	-	ENSMUST00000057525.13,ENSMUSG00000036989.16	Trim3	ENSMUSG00000036989.16	ENSMUST00000057525.13	protein_coding	chr7:105610470-105633560
chr7	105633454	105633570	+	C-rich	Low_complexity	Low_complexity	chr7	105633536	105633538	-	ENSMUST00000106789.7,ENSMUSG00000036989.16	Trim3	ENSMUSG00000036989.16	ENSMUST00000106789.7	protein_coding	chr7:105610648-105633537
chr7	105633454	105633570	+	C-rich	Low_complexity	Low_complexity	chr7	105633484	105633486	-	ENSMUST00000147044.3,ENSMUSG00000036989.16	Trim3	ENSMUSG00000036989.16	ENSMUST00000147044.3	protein_coding	chr7:105610650-105633485
chr7	105633454	105633570	+	C-rich	Low_complexity	Low_complexity	chr7	105633524	105633526	-	ENSMUST00000153371.8,ENSMUSG00000036989.16	Trim3	ENSMUSG00000036989.16	ENSMUST00000153371.8	protein_coding	chr7:105618327-105633525
chr7	105736633	105736679	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	105736670	105736672	+	ENSMUST00000149695.7,ENSMUSG00000030890.16	Ilk	ENSMUSG00000030890.16	ENSMUST00000149695.7	protein_coding	chr7:105736671-105742918
chr7	105743578	105743724	+	B1_Mus1	SINE	Alu	chr7	105743609	105743611	-	ENSMUST00000146999.1,ENSMUSG00000043866.11	Taf10	ENSMUSG00000043866.11	ENSMUST00000146999.1	protein_coding	chr7:105742906-105743610
chr7	105787506	105787557	+	(TCCG)n	Simple_repeat	Simple_repeat	chr7	105787551	105787553	-	ENSMUST00000154659.1,ENSMUSG00000036862.15	Dchs1	ENSMUSG00000036862.15	ENSMUST00000154659.1	protein_coding	chr7:105763645-105787552
chr7	105861744	105861778	+	AT_rich	Low_complexity	Low_complexity	chr7	105861767	105861769	+	ENSMUST00000183393.1,ENSMUSG00000086414.2	Gm15645	ENSMUSG00000086414.2	ENSMUST00000183393.1	transcribed_processed_pseudogene	chr7:105861768-105863331
chr7	105886179	105888653	+	L1Md_F	LINE	L1	chr7	105886865	105886867	-	ENSMUST00000210244.1,ENSMUSG00000110141.1	Gm45684	ENSMUSG00000110141.1	ENSMUST00000210244.1	TEC	chr7:105885296-105886866
chr7	106123150	106123184	+	AT_rich	Low_complexity	Low_complexity	chr7	106123173	106123175	+	ENSMUST00000184198.1,ENSMUSG00000098987.1	Gm8982	ENSMUSG00000098987.1	ENSMUST00000184198.1	processed_pseudogene	chr7:106123174-106124730
chr7	106684774	106685009	-	L1Md_F3	LINE	L1	chr7	106685002	106685004	+	ENSMUST00000208331.1,ENSMUSG00000109011.1	Gm44857	ENSMUSG00000109011.1	ENSMUST00000208331.1	processed_pseudogene	chr7:106685003-106685198
chr7	106901200	106901578	+	L1_Mus3	LINE	L1	chr7	106901240	106901242	-	ENSMUST00000213251.1,ENSMUSG00000069390.5	Olfr707	ENSMUSG00000069390.5	ENSMUST00000213251.1	protein_coding	chr7:106890446-106901241
chr7	107071362	107071600	-	Charlie7	DNA	hAT-Charlie	chr7	107071441	107071443	+	ENSMUST00000214123.1,ENSMUSG00000049674.7	Olfr714	ENSMUSG00000049674.7	ENSMUST00000214123.1	protein_coding	chr7:107071442-107076509
chr7	107113224	107114539	-	Lx3A	LINE	L1	chr7	107113387	107113389	+	ENSMUST00000210247.1,ENSMUSG00000110209.1	Gm45868	ENSMUSG00000110209.1	ENSMUST00000210247.1	lincRNA	chr7:107113388-107127822
chr7	107141224	107141624	+	Lx3B	LINE	L1	chr7	107141313	107141315	+	ENSMUST00000210474.1,ENSMUSG00000073896.5	Olfr716	ENSMUSG00000073896.5	ENSMUST00000210474.1	protein_coding	chr7:107141314-107147824
chr7	107242870	107243216	+	ORR1A0	LTR	ERVL-MaLR	chr7	107243021	107243023	+	ENSMUST00000133824.1,ENSMUSG00000057215.6	Platr28	ENSMUSG00000057215.6	ENSMUST00000133824.1	lincRNA	chr7:107243022-107300396
chr7	107319453	107319975	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr7	107319762	107319764	-	ENSMUST00000103763.1,ENSMUSG00000076951.1	Gm24932	ENSMUSG00000076951.1	ENSMUST00000103763.1	miRNA	chr7:107319654-107319763
chr7	107624724	107625279	+	L2	LINE	L2	chr7	107625160	107625162	-	ENSMUST00000060348.2,ENSMUSG00000049740.2	5330417H12Rik	ENSMUSG00000049740.2	ENSMUST00000060348.2	protein_coding	chr7:107623971-107625161
chr7	107780696	107781096	+	MTA_Mm	LTR	ERVL-MaLR	chr7	107780913	107780915	+	ENSMUST00000207742.1,ENSMUSG00000109402.1	Gm45040	ENSMUSG00000109402.1	ENSMUST00000207742.1	antisense	chr7:107780914-107786251
chr7	107780696	107781096	+	MTA_Mm	LTR	ERVL-MaLR	chr7	107780938	107780940	+	ENSMUST00000208448.1,ENSMUSG00000109402.1	Gm45040	ENSMUSG00000109402.1	ENSMUST00000208448.1	antisense	chr7:107780939-107786446
chr7	108120525	108120643	-	MLTR25A	LTR	ERVK	chr7	108120526	108120528	-	ENSMUST00000157612.1,ENSMUSG00000088237.1	Gm25424	ENSMUSG00000088237.1	ENSMUST00000157612.1	snRNA	chr7:108120470-108120527
chr7	108257145	108257309	+	B3	SINE	B2	chr7	108257191	108257193	-	ENSMUST00000211508.2,ENSMUSG00000096465.3	Olfr488	ENSMUSG00000096465.3	ENSMUST00000211508.2	protein_coding	chr7:108251617-108257192
chr7	108695698	108696208	-	L1_Mur2	LINE	L1	chr7	108696200	108696202	+	ENSMUST00000207188.2,ENSMUSG00000109070.2	Olfr511-ps1	ENSMUSG00000109070.2	ENSMUST00000207188.2	unprocessed_pseudogene	chr7:108696201-108696417
chr7	108843473	108843875	-	L1MC	LINE	L1	chr7	108843491	108843493	-	ENSMUST00000208389.2,ENSMUSG00000109406.2	Olfr515-ps1	ENSMUSG00000109406.2	ENSMUST00000208389.2	unprocessed_pseudogene	chr7:108843304-108843492
chr7	108961191	108961583	+	MTB	LTR	ERVL-MaLR	chr7	108961534	108961536	-	ENSMUST00000180590.1,ENSMUSG00000097220.1	Gm26599	ENSMUSG00000097220.1	ENSMUST00000180590.1	lincRNA	chr7:108950754-108961535
chr7	109017146	109017574	-	RLTR24	LTR	ERV1	chr7	109017541	109017543	+	ENSMUST00000119474.1,ENSMUSG00000031028.14	Tub	ENSMUSG00000031028.14	ENSMUST00000119474.1	protein_coding	chr7:109017542-109030482
chr7	109076135	109076242	-	U6	snRNA	snRNA	chr7	109076241	109076243	-	ENSMUST00000179144.1,ENSMUSG00000094199.1	Gm25450	ENSMUSG00000094199.1	ENSMUST00000179144.1	snRNA	chr7:109076136-109076242
chr7	109175162	109175209	+	GC_rich	Low_complexity	Low_complexity	chr7	109175206	109175208	-	ENSMUST00000207178.1,ENSMUSG00000036111.8	Lmo1	ENSMUSG00000036111.8	ENSMUST00000207178.1	protein_coding	chr7:109138675-109175207
chr7	109699289	109699781	+	RLTR16	LTR	ERVK	chr7	109699524	109699526	+	ENSMUST00000207292.1,ENSMUSG00000109499.1	Gm44864	ENSMUSG00000109499.1	ENSMUST00000207292.1	antisense	chr7:109699525-109703608
chr7	109720937	109721322	-	RLTR10B2	LTR	ERVK	chr7	109721015	109721017	-	ENSMUST00000145211.2,ENSMUSG00000031022.15	BC051019	ENSMUSG00000031022.15	ENSMUST00000145211.2	protein_coding	chr7:109716097-109721016
chr7	109774611	109774718	-	U6	snRNA	snRNA	chr7	109774717	109774719	-	ENSMUST00000177941.1,ENSMUSG00000094713.1	Gm22822	ENSMUSG00000094713.1	ENSMUST00000177941.1	snRNA	chr7:109774612-109774718
chr7	109865674	109865706	+	GC_rich	Low_complexity	Low_complexity	chr7	109865678	109865680	-	ENSMUST00000106729.7,ENSMUSG00000007279.14	Scube2	ENSMUSG00000007279.14	ENSMUST00000106729.7	protein_coding	chr7:109798690-109865679
chr7	109897511	109897574	+	B1F	SINE	Alu	chr7	109897555	109897557	-	ENSMUST00000156858.1,ENSMUSG00000035901.14	Dennd5a	ENSMUSG00000035901.14	ENSMUST00000156858.1	protein_coding	chr7:109896380-109897556
chr7	109900380	109900510	-	MIR3	SINE	MIR	chr7	109900463	109900465	-	ENSMUST00000134331.1,ENSMUSG00000035901.14	Dennd5a	ENSMUSG00000035901.14	ENSMUST00000134331.1	protein_coding	chr7:109899072-109900464
chr7	109920650	109920807	+	B2_Mm1a	SINE	B2	chr7	109920649	109920651	-	ENSMUST00000154002.1,ENSMUSG00000035901.14	Dennd5a	ENSMUSG00000035901.14	ENSMUST00000154002.1	protein_coding	chr7:109907405-109920650
chr7	109960219	109960332	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	109960322	109960324	-	ENSMUST00000151923.1,ENSMUSG00000035901.14	Dennd5a	ENSMUSG00000035901.14	ENSMUST00000151923.1	protein_coding	chr7:109934059-109960323
chr7	109986874	109987063	-	B2_Mm1t	SINE	B2	chr7	109986928	109986930	-	ENSMUST00000118429.7,ENSMUSG00000047554.14	Tmem41b	ENSMUSG00000047554.14	ENSMUST00000118429.7	protein_coding	chr7:109973485-109986929
chr7	109988077	109988131	+	U6	snRNA	snRNA	chr7	109988077	109988079	+	ENSMUST00000158681.1,ENSMUSG00000089306.1	Gm24842	ENSMUSG00000089306.1	ENSMUST00000158681.1	snRNA	chr7:109988078-109988131
chr7	109999155	109999267	+	PB1D7	SINE	Alu	chr7	109999232	109999234	-	ENSMUST00000188662.1,ENSMUSG00000101585.6	1600010M07Rik	ENSMUSG00000101585.6	ENSMUST00000188662.1	antisense	chr7:109998404-109999233
chr7	110003577	110003707	+	U1	snRNA	snRNA	chr7	110003577	110003579	+	ENSMUST00000083455.1,ENSMUSG00000065389.1	Gm23100	ENSMUSG00000065389.1	ENSMUST00000083455.1	snRNA	chr7:110003578-110003718
chr7	110029932	110030068	-	B1_Mus1	SINE	Alu	chr7	110030065	110030067	+	ENSMUST00000208408.1,ENSMUSG00000066232.4	Ipo7	ENSMUSG00000066232.4	ENSMUST00000208408.1	protein_coding	chr7:110030066-110034224
chr7	110151009	110151406	-	MTA_Mm	LTR	ERVL-MaLR	chr7	110151201	110151203	-	ENSMUST00000185931.6,ENSMUSG00000101585.6	1600010M07Rik	ENSMUSG00000101585.6	ENSMUST00000185931.6	antisense	chr7:109998412-110151202
chr7	110352191	110352275	-	B1_Mur1	SINE	Alu	chr7	110352240	110352242	-	ENSMUST00000169740.1,ENSMUSG00000038371.15	Sbf2	ENSMUSG00000038371.15	ENSMUST00000169740.1	protein_coding	chr7:110339184-110352241
chr7	110699574	110699734	+	MIR	SINE	MIR	chr7	110699733	110699735	-	ENSMUST00000210822.1,ENSMUSG00000109700.1	Gm21123	ENSMUSG00000109700.1	ENSMUST00000210822.1	lincRNA	chr7:110690163-110699734
chr7	110801399	110801658	+	L1M3	LINE	L1	chr7	110801598	110801600	-	ENSMUST00000148367.1,ENSMUSG00000030788.16	Rnf141	ENSMUSG00000030788.16	ENSMUST00000148367.1	protein_coding	chr7:110800432-110801599
chr7	110837327	110837746	-	MTC	LTR	ERVL-MaLR	chr7	110837528	110837530	-	ENSMUST00000175981.7,ENSMUSG00000030788.16	Rnf141	ENSMUSG00000030788.16	ENSMUST00000175981.7	protein_coding	chr7:110815146-110837529
chr7	110926628	110926990	+	MLT1K	LTR	ERVL-MaLR	chr7	110926671	110926673	-	ENSMUST00000135590.1,ENSMUSG00000005611.15	Mrvi1	ENSMUSG00000005611.15	ENSMUST00000135590.1	protein_coding	chr7:110924350-110926672
chr7	111092766	111093041	+	L1M2	LINE	L1	chr7	111092815	111092817	-	ENSMUST00000211063.1,ENSMUSG00000110326.1	Gm45378	ENSMUSG00000110326.1	ENSMUST00000211063.1	TEC	chr7:111090106-111092816
chr7	111792977	111793051	+	(CA)n	Simple_repeat	Simple_repeat	chr7	111793010	111793012	-	ENSMUST00000104709.1,ENSMUSG00000077902.1	Gm25787	ENSMUSG00000077902.1	ENSMUST00000104709.1	miRNA	chr7:111792920-111793011
chr7	111947268	111947330	-	U2	snRNA	snRNA	chr7	111947329	111947331	-	ENSMUST00000083817.1,ENSMUSG00000065751.1	Gm23345	ENSMUSG00000065751.1	ENSMUST00000083817.1	snRNA	chr7:111947181-111947330
chr7	111947330	111947402	+	RMER1C	Other	Other	chr7	111947329	111947331	-	ENSMUST00000083817.1,ENSMUSG00000065751.1	Gm23345	ENSMUSG00000065751.1	ENSMUST00000083817.1	snRNA	chr7:111947181-111947330
chr7	112023478	112023530	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	112023503	112023505	+	ENSMUST00000106653.3,ENSMUSG00000059263.9	Usp47	ENSMUSG00000059263.9	ENSMUST00000106653.3	protein_coding	chr7:112023504-112111384
chr7	112023478	112023530	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	112023505	112023507	+	ENSMUST00000215510.1,ENSMUSG00000059263.9	Usp47	ENSMUSG00000059263.9	ENSMUST00000215510.1	protein_coding	chr7:112023506-112110483
chr7	112315988	112316182	+	B3A	SINE	B2	chr7	112316028	112316030	+	ENSMUST00000150428.1,ENSMUSG00000038244.14	Mical2	ENSMUSG00000038244.14	ENSMUST00000150428.1	protein_coding	chr7:112316029-112347491
chr7	112679484	112679527	+	GC_rich	Low_complexity	Low_complexity	chr7	112679509	112679511	+	ENSMUST00000172065.7,ENSMUSG00000055320.17	Tead1	ENSMUSG00000055320.17	ENSMUST00000172065.7	protein_coding	chr7:112679510-112842395
chr7	112713899	112714083	-	MLT1B	LTR	ERVL-MaLR	chr7	112713950	112713952	+	ENSMUST00000199696.1,ENSMUSG00000106046.1	Gm44462	ENSMUSG00000106046.1	ENSMUST00000199696.1	miRNA	chr7:112713951-112714079
chr7	112983903	112983939	-	L2c	LINE	L2	chr7	112983902	112983904	+	ENSMUST00000210768.1,ENSMUSG00000110207.1	Gm33586	ENSMUSG00000110207.1	ENSMUST00000210768.1	lincRNA	chr7:112983903-113010892
chr7	113207456	113207486	+	GC_rich	Low_complexity	Low_complexity	chr7	113207464	113207466	+	ENSMUST00000047321.8,ENSMUSG00000055116.8	Arntl	ENSMUSG00000055116.8	ENSMUST00000047321.8	protein_coding	chr7:113207465-113314126
chr7	113239720	113239796	+	IMPB_01	Satellite	Satellite	chr7	113239753	113239755	+	ENSMUST00000209495.1,ENSMUSG00000055116.8	Arntl	ENSMUSG00000055116.8	ENSMUST00000209495.1	protein_coding	chr7:113239754-113243748
chr7	113514076	113514231	-	L1M4b	LINE	L1	chr7	113514097	113514099	+	ENSMUST00000122890.1,ENSMUSG00000030759.16	Far1	ENSMUSG00000030759.16	ENSMUST00000122890.1	protein_coding	chr7:113514098-113539390
chr7	113566052	113566125	-	B1F1	SINE	Alu	chr7	113566099	113566101	+	ENSMUST00000151133.1,ENSMUSG00000030759.16	Far1	ENSMUSG00000030759.16	ENSMUST00000151133.1	protein_coding	chr7:113566100-113568205
chr7	113666729	113667100	-	ORR1B2	LTR	ERVL-MaLR	chr7	113667015	113667017	-	ENSMUST00000158842.1,ENSMUSG00000089467.1	Gm23700	ENSMUSG00000089467.1	ENSMUST00000158842.1	miRNA	chr7:113666915-113667016
chr7	113729520	113729879	+	ORR1B1	LTR	ERVL-MaLR	chr7	113729653	113729655	+	ENSMUST00000187378.1,ENSMUSG00000101755.1	Gm29507	ENSMUSG00000101755.1	ENSMUST00000187378.1	lincRNA	chr7:113729654-113752166
chr7	114086813	114086984	+	B3A	SINE	B2	chr7	114086897	114086899	+	ENSMUST00000210417.1,ENSMUSG00000110248.1	Gm45615	ENSMUSG00000110248.1	ENSMUST00000210417.1	antisense	chr7:114086898-114088357
chr7	114415154	114415205	+	GC_rich	Low_complexity	Low_complexity	chr7	114415160	114415162	-	ENSMUST00000163996.1,ENSMUSG00000087475.3	4933406I18Rik	ENSMUSG00000087475.3	ENSMUST00000163996.1	lincRNA	chr7:114315479-114415161
chr7	114506782	114507540	-	Lx2	LINE	L1	chr7	114507141	114507143	+	ENSMUST00000210411.1,ENSMUSG00000030671.9	Pde3b	ENSMUSG00000030671.9	ENSMUST00000210411.1	protein_coding	chr7:114507142-114509799
chr7	114632636	114632701	+	(GA)n	Simple_repeat	Simple_repeat	chr7	114632644	114632646	-	ENSMUST00000205560.1,ENSMUSG00000030669.13	Calca	ENSMUSG00000030669.13	ENSMUST00000205560.1	protein_coding	chr7:114631568-114632645
chr7	114936544	114936786	+	7SK	RNA	RNA	chr7	114936544	114936546	+	ENSMUST00000158723.1,ENSMUSG00000089348.1	Gm22669	ENSMUSG00000089348.1	ENSMUST00000158723.1	misc_RNA	chr7:114936545-114936862
chr7	114948418	114948831	+	BGLII	LTR	ERVK	chr7	114948496	114948498	-	ENSMUST00000205356.1,ENSMUSG00000108419.1	Gm45020	ENSMUSG00000108419.1	ENSMUST00000205356.1	lincRNA	chr7:114942122-114948497
chr7	114948418	114948831	+	BGLII	LTR	ERVK	chr7	114948649	114948651	+	ENSMUST00000205913.1,ENSMUSG00000108379.1	A730082K24Rik	ENSMUSG00000108379.1	ENSMUST00000205913.1	lincRNA	chr7:114948650-114983960
chr7	114948418	114948831	+	BGLII	LTR	ERVK	chr7	114948687	114948689	+	ENSMUST00000205365.1,ENSMUSG00000108379.1	A730082K24Rik	ENSMUSG00000108379.1	ENSMUST00000205365.1	lincRNA	chr7:114948688-114958126
chr7	114951116	114951487	+	MTB_Mm	LTR	ERVL-MaLR	chr7	114951273	114951275	+	ENSMUST00000206806.1,ENSMUSG00000108379.1	A730082K24Rik	ENSMUSG00000108379.1	ENSMUST00000206806.1	lincRNA	chr7:114951274-114975367
chr7	114951116	114951487	+	MTB_Mm	LTR	ERVL-MaLR	chr7	114951288	114951290	+	ENSMUST00000206008.1,ENSMUSG00000108379.1	A730082K24Rik	ENSMUSG00000108379.1	ENSMUST00000206008.1	lincRNA	chr7:114951289-114975315
chr7	114951116	114951487	+	MTB_Mm	LTR	ERVL-MaLR	chr7	114951306	114951308	+	ENSMUST00000205795.1,ENSMUSG00000108379.1	A730082K24Rik	ENSMUSG00000108379.1	ENSMUST00000205795.1	lincRNA	chr7:114951307-114982865
chr7	115031792	115031976	+	B3	SINE	B2	chr7	115031936	115031938	+	ENSMUST00000205469.1,ENSMUSG00000108722.1	Gm34225	ENSMUSG00000108722.1	ENSMUST00000205469.1	lincRNA	chr7:115031937-115066506
chr7	116084623	116084663	-	B3A	SINE	B2	chr7	116084634	116084636	-	ENSMUST00000111755.3,ENSMUSG00000091900.2	Gm4353	ENSMUSG00000091900.2	ENSMUST00000111755.3	protein_coding	chr7:116082863-116084635
chr7	116189547	116189692	-	B1F2	SINE	Alu	chr7	116189603	116189605	-	ENSMUST00000182511.7,ENSMUSG00000045659.18	Plekha7	ENSMUSG00000045659.18	ENSMUST00000182511.7	protein_coding	chr7:116133795-116189604
chr7	116258332	116258552	+	B3	SINE	B2	chr7	116258477	116258479	-	ENSMUST00000206662.1,ENSMUSG00000045659.18	Plekha7	ENSMUSG00000045659.18	ENSMUST00000206662.1	protein_coding	chr7:116170701-116258478
chr7	116333170	116333257	-	U14	snRNA	snRNA	chr7	116333181	116333183	-	ENSMUST00000206712.1,ENSMUSG00000090862.3	Rps13	ENSMUSG00000090862.3	ENSMUST00000206712.1	protein_coding	chr7:116331511-116333182
chr7	116333170	116333257	-	U14	snRNA	snRNA	chr7	116333256	116333258	-	ENSMUST00000082807.1,ENSMUSG00000064741.1	Snord14a	ENSMUSG00000064741.1	ENSMUST00000082807.1	snoRNA	chr7:116333171-116333257
chr7	116340608	116340754	-	B1_Mm	SINE	Alu	chr7	116340628	116340630	-	ENSMUST00000206805.1,ENSMUSG00000030660.9	Pik3c2a	ENSMUSG00000030660.9	ENSMUST00000206805.1	protein_coding	chr7:116337276-116340629
chr7	116342594	116342677	+	B3	SINE	B2	chr7	116342645	116342647	-	ENSMUST00000206248.1,ENSMUSG00000030660.9	Pik3c2a	ENSMUSG00000030660.9	ENSMUST00000206248.1	protein_coding	chr7:116341906-116342646
chr7	116398427	116401463	+	L1_Mus3	LINE	L1	chr7	116399716	116399718	-	ENSMUST00000206710.1,ENSMUSG00000108500.1	Gm45033	ENSMUSG00000108500.1	ENSMUST00000206710.1	TEC	chr7:116396551-116399717
chr7	116625152	116625242	-	5S	rRNA	rRNA	chr7	116625241	116625243	-	ENSMUST00000122543.1,ENSMUSG00000084492.1	n-R5s157	ENSMUSG00000084492.1	ENSMUST00000122543.1	rRNA	chr7:116625122-116625242
chr7	116691379	116691485	-	U6	snRNA	snRNA	chr7	116691484	116691486	-	ENSMUST00000157609.1,ENSMUSG00000088234.1	Gm25423	ENSMUSG00000088234.1	ENSMUST00000157609.1	snRNA	chr7:116691379-116691485
chr7	116952588	116952695	-	U6	snRNA	snRNA	chr7	116952694	116952696	-	ENSMUST00000083037.1,ENSMUSG00000064971.1	Gm26054	ENSMUSG00000064971.1	ENSMUST00000083037.1	snRNA	chr7:116952589-116952695
chr7	116952695	116955210	-	L1_Mus1	LINE	L1	chr7	116952694	116952696	-	ENSMUST00000083037.1,ENSMUSG00000064971.1	Gm26054	ENSMUSG00000064971.1	ENSMUST00000083037.1	snRNA	chr7:116952589-116952695
chr7	117776735	117777080	+	ORR1B2	LTR	ERVL-MaLR	chr7	117776793	117776795	+	ENSMUST00000157491.1,ENSMUSG00000088116.1	Gm24063	ENSMUSG00000088116.1	ENSMUST00000157491.1	miRNA	chr7:117776794-117776898
chr7	118159231	118159347	+	B1_Mus2	SINE	Alu	chr7	118159263	118159265	-	ENSMUST00000208025.1,ENSMUSG00000030655.15	Smg1	ENSMUSG00000030655.15	ENSMUST00000208025.1	protein_coding	chr7:118157805-118159264
chr7	118275189	118275537	-	ORR1E	LTR	ERVL-MaLR	chr7	118275362	118275364	-	ENSMUST00000207365.1,ENSMUSG00000108980.1	Gm45155	ENSMUSG00000108980.1	ENSMUST00000207365.1	lincRNA	chr7:118273292-118275363
chr7	118566626	118566718	-	PB1D11	SINE	Alu	chr7	118566626	118566628	-	ENSMUST00000145989.1,ENSMUSG00000042246.5	Tmc7	ENSMUSG00000042246.5	ENSMUST00000145989.1	protein_coding	chr7:118564239-118566627
chr7	118622256	118622771	-	MERVL-int	LTR	ERVL	chr7	118622513	118622515	+	ENSMUST00000155572.1,ENSMUSG00000030650.18	Tmc5	ENSMUSG00000030650.18	ENSMUST00000155572.1	protein_coding	chr7:118622514-118623469
chr7	118740206	118740325	+	(TG)n	Simple_repeat	Simple_repeat	chr7	118740225	118740227	+	ENSMUST00000059390.12,ENSMUSG00000030982.19	Vps35l	ENSMUSG00000030982.19	ENSMUST00000059390.12	protein_coding	chr7:118740226-118842966
chr7	118763697	118764596	+	RMER19B	LTR	ERVK	chr7	118764123	118764125	+	ENSMUST00000033280.13,ENSMUSG00000030982.19	Vps35l	ENSMUSG00000030982.19	ENSMUST00000033280.13	protein_coding	chr7:118764124-118841487
chr7	118825640	118825940	-	B4A	SINE	B4	chr7	118825703	118825705	+	ENSMUST00000209103.1,ENSMUSG00000030982.19	Vps35l	ENSMUSG00000030982.19	ENSMUST00000209103.1	protein_coding	chr7:118825704-118828884
chr7	118855964	118856015	+	GC_rich	Low_complexity	Low_complexity	chr7	118855997	118855999	-	ENSMUST00000116280.8,ENSMUSG00000030980.17	Knop1	ENSMUSG00000030980.17	ENSMUST00000116280.8	protein_coding	chr7:118842222-118855998
chr7	118855964	118856015	+	GC_rich	Low_complexity	Low_complexity	chr7	118856000	118856002	-	ENSMUST00000063607.11,ENSMUSG00000030980.17	Knop1	ENSMUSG00000030980.17	ENSMUST00000063607.11	protein_coding	chr7:118842237-118856001
chr7	118855964	118856015	+	GC_rich	Low_complexity	Low_complexity	chr7	118855991	118855993	-	ENSMUST00000126792.8,ENSMUSG00000030980.17	Knop1	ENSMUSG00000030980.17	ENSMUST00000126792.8	protein_coding	chr7:118843790-118855992
chr7	119306246	119306579	-	L1M4	LINE	L1	chr7	119306247	119306249	-	ENSMUST00000104465.1,ENSMUSG00000077653.1	Gm23321	ENSMUSG00000077653.1	ENSMUST00000104465.1	snoRNA	chr7:119306123-119306248
chr7	119498491	119498700	+	LTR16B2	LTR	ERVL	chr7	119498676	119498678	+	ENSMUST00000194930.1,ENSMUSG00000103258.1	Gm37518	ENSMUSG00000103258.1	ENSMUST00000194930.1	TEC	chr7:119498677-119501279
chr7	119514121	119514392	-	B4	SINE	B4	chr7	119514301	119514303	-	ENSMUST00000182878.1,ENSMUSG00000098014.1	Gm26967	ENSMUSG00000098014.1	ENSMUST00000182878.1	sense_intronic	chr7:119512000-119514302
chr7	119554132	119554554	+	MT2B1	LTR	ERVL	chr7	119554339	119554341	+	ENSMUST00000098084.10,ENSMUSG00000030945.17	Acsm2	ENSMUSG00000030945.17	ENSMUST00000098084.10	protein_coding	chr7:119554340-119596176
chr7	119620308	119620416	-	MIR	SINE	MIR	chr7	119620374	119620376	-	ENSMUST00000207110.1,ENSMUSG00000109093.1	Gm19950	ENSMUSG00000109093.1	ENSMUST00000207110.1	antisense	chr7:119610153-119620375
chr7	119631050	119631145	+	(TCTCCC)n	Simple_repeat	Simple_repeat	chr7	119631057	119631059	-	ENSMUST00000207795.1,ENSMUSG00000108884.1	Gm45792	ENSMUSG00000108884.1	ENSMUST00000207795.1	antisense	chr7:119626519-119631058
chr7	119642002	119642476	-	RLTR19-int	LTR	ERVK	chr7	119642407	119642409	-	ENSMUST00000207364.1,ENSMUSG00000109093.1	Gm19950	ENSMUSG00000109093.1	ENSMUST00000207364.1	antisense	chr7:119612769-119642408
chr7	119642002	119642476	-	RLTR19-int	LTR	ERVK	chr7	119642359	119642361	-	ENSMUST00000208211.1,ENSMUSG00000109093.1	Gm19950	ENSMUSG00000109093.1	ENSMUST00000208211.1	antisense	chr7:119631119-119642360
chr7	119895659	119895763	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	119895744	119895746	-	ENSMUST00000059851.13,ENSMUSG00000048787.13	Dcun1d3	ENSMUSG00000048787.13	ENSMUST00000059851.13	protein_coding	chr7:119852796-119895745
chr7	119969816	119969916	+	U6	snRNA	snRNA	chr7	119969820	119969822	+	ENSMUST00000157547.1,ENSMUSG00000088172.1	Gm25217	ENSMUSG00000088172.1	ENSMUST00000157547.1	snRNA	chr7:119969821-119969921
chr7	120597344	120597744	-	Lx6	LINE	L1	chr7	120597624	120597626	+	ENSMUST00000123576.1,ENSMUSG00000044141.8	E130201H02Rik	ENSMUSG00000044141.8	ENSMUST00000123576.1	processed_pseudogene	chr7:120597625-120598475
chr7	120677572	120677764	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	120677617	120677619	+	ENSMUST00000207065.1,ENSMUSG00000046096.7	Mosmo	ENSMUSG00000046096.7	ENSMUST00000207065.1	protein_coding	chr7:120677618-120730638
chr7	120677572	120677764	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	120677619	120677621	+	ENSMUST00000208454.1,ENSMUSG00000046096.7	Mosmo	ENSMUSG00000046096.7	ENSMUST00000208454.1	protein_coding	chr7:120677620-120726681
chr7	120677572	120677764	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	120677630	120677632	+	ENSMUST00000060175.7,ENSMUSG00000046096.7	Mosmo	ENSMUSG00000046096.7	ENSMUST00000060175.7	protein_coding	chr7:120677631-120734854
chr7	120677572	120677764	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	120677679	120677681	+	ENSMUST00000208627.1,ENSMUSG00000046096.7	Mosmo	ENSMUSG00000046096.7	ENSMUST00000208627.1	protein_coding	chr7:120677680-120730494
chr7	120713251	120713458	-	B3	SINE	B2	chr7	120713328	120713330	+	ENSMUST00000208319.1,ENSMUSG00000046096.7	Mosmo	ENSMUSG00000046096.7	ENSMUST00000208319.1	protein_coding	chr7:120713329-120726672
chr7	120842829	120842905	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chr7	120842830	120842832	+	ENSMUST00000047875.15,ENSMUSG00000035064.17	Eef2k	ENSMUSG00000035064.17	ENSMUST00000047875.15	protein_coding	chr7:120842831-120907450
chr7	120876076	120876286	-	L2b	LINE	L2	chr7	120876219	120876221	+	ENSMUST00000125828.2,ENSMUSG00000035064.17	Eef2k	ENSMUSG00000035064.17	ENSMUST00000125828.2	protein_coding	chr7:120876220-120880327
chr7	121063847	121064035	+	B3A	SINE	B2	chr7	121063958	121063960	-	ENSMUST00000207806.1,ENSMUSG00000109036.1	2210406H18Rik	ENSMUSG00000109036.1	ENSMUST00000207806.1	TEC	chr7:121062852-121063959
chr7	121257172	121257496	-	MLT1J	LTR	ERVL-MaLR	chr7	121257358	121257360	+	ENSMUST00000205627.1,ENSMUSG00000108627.1	Gm45079	ENSMUSG00000108627.1	ENSMUST00000205627.1	lincRNA	chr7:121257359-121295852
chr7	121609124	121609738	-	RMER19B	LTR	ERVK	chr7	121609333	121609335	-	ENSMUST00000206244.1,ENSMUSG00000108811.1	4933432K03Rik	ENSMUSG00000108811.1	ENSMUST00000206244.1	antisense	chr7:121589276-121609334
chr7	121882498	121882653	+	(CA)n	Simple_repeat	Simple_repeat	chr7	121882516	121882518	-	ENSMUST00000206817.1,ENSMUSG00000034951.10	Cog7	ENSMUSG00000034951.10	ENSMUST00000206817.1	protein_coding	chr7:121879363-121882517
chr7	122021004	122021180	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	122021166	122021168	-	ENSMUST00000124566.1,ENSMUSG00000030872.14	Gga2	ENSMUSG00000030872.14	ENSMUST00000124566.1	protein_coding	chr7:121986722-122021167
chr7	122021004	122021180	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	122021179	122021181	-	ENSMUST00000145277.7,ENSMUSG00000030872.14	Gga2	ENSMUSG00000030872.14	ENSMUST00000145277.7	protein_coding	chr7:122004747-122021180
chr7	122095849	122096197	+	ORR1D1	LTR	ERVL-MaLR	chr7	122096082	122096084	+	ENSMUST00000206292.1,ENSMUSG00000108573.1	Gm44986	ENSMUSG00000108573.1	ENSMUST00000206292.1	TEC	chr7:122096083-122098911
chr7	122101300	122101439	+	B1_Mm	SINE	Alu	chr7	122101346	122101348	-	ENSMUST00000145863.1,ENSMUSG00000030869.11	Ndufab1	ENSMUSG00000030869.11	ENSMUST00000145863.1	protein_coding	chr7:122094032-122101347
chr7	122167998	122168090	+	L2b	LINE	L2	chr7	122168043	122168045	-	ENSMUST00000206202.1,ENSMUSG00000108688.1	Gm44985	ENSMUSG00000108688.1	ENSMUST00000206202.1	TEC	chr7:122167029-122168044
chr7	122221385	122221576	+	MER20	DNA	hAT-Charlie	chr7	122221572	122221574	+	ENSMUST00000160828.1,ENSMUSG00000030865.4	Chp2	ENSMUSG00000030865.4	ENSMUST00000160828.1	protein_coding	chr7:122221573-122222183
chr7	122250023	122250158	+	Charlie11	DNA	hAT-Charlie	chr7	122250024	122250026	-	ENSMUST00000206804.1,ENSMUSG00000108708.1	Gm29977	ENSMUSG00000108708.1	ENSMUST00000206804.1	processed_pseudogene	chr7:122249302-122250025
chr7	122265094	122265200	+	U6	snRNA	snRNA	chr7	122265093	122265095	+	ENSMUST00000082598.1,ENSMUSG00000064532.1	Gm23614	ENSMUSG00000064532.1	ENSMUST00000082598.1	snRNA	chr7:122265094-122265200
chr7	122289277	122289307	+	GC_rich	Low_complexity	Low_complexity	chr7	122289296	122289298	+	ENSMUST00000064989.11,ENSMUSG00000052889.11	Prkcb	ENSMUSG00000052889.11	ENSMUST00000064989.11	protein_coding	chr7:122289297-122628655
chr7	122361976	122362021	+	(T)n	Simple_repeat	Simple_repeat	chr7	122361999	122362001	+	ENSMUST00000206841.1,ENSMUSG00000108522.1	Gm44664	ENSMUSG00000108522.1	ENSMUST00000206841.1	TEC	chr7:122362000-122363785
chr7	122462809	122464493	-	Lx8b	LINE	L1	chr7	122463437	122463439	+	ENSMUST00000206563.1,ENSMUSG00000108455.1	Gm44745	ENSMUSG00000108455.1	ENSMUST00000206563.1	TEC	chr7:122463438-122466160
chr7	122965216	122965876	+	MT2B1	LTR	ERVL	chr7	122965685	122965687	+	ENSMUST00000148880.1,ENSMUSG00000030779.16	Rbbp6	ENSMUSG00000030779.16	ENSMUST00000148880.1	protein_coding	chr7:122965686-122976008
chr7	122970028	122970051	+	AT_rich	Low_complexity	Low_complexity	chr7	122970049	122970051	-	ENSMUST00000205998.1,ENSMUSG00000108452.1	4930413G21Rik	ENSMUSG00000108452.1	ENSMUST00000205998.1	TEC	chr7:122969058-122970050
chr7	122995284	122995467	-	B4A	SINE	B4	chr7	122995347	122995349	+	ENSMUST00000206967.1,ENSMUSG00000108551.1	Gm20274	ENSMUSG00000108551.1	ENSMUST00000206967.1	sense_intronic	chr7:122995348-122995931
chr7	123124169	123124209	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	123124176	123124178	+	ENSMUST00000205514.1,ENSMUSG00000052707.8	Tnrc6a	ENSMUSG00000052707.8	ENSMUST00000205514.1	protein_coding	chr7:123124177-123193987
chr7	123124169	123124209	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	123124180	123124182	+	ENSMUST00000094053.6,ENSMUSG00000052707.8	Tnrc6a	ENSMUSG00000052707.8	ENSMUST00000094053.6	protein_coding	chr7:123124181-123195296
chr7	123228506	123229071	+	MT2B	LTR	ERVL	chr7	123228883	123228885	+	ENSMUST00000131461.2,ENSMUSG00000030769.15	Slc5a11	ENSMUSG00000030769.15	ENSMUST00000131461.2	protein_coding	chr7:123228884-123239426
chr7	123228506	123229071	+	MT2B	LTR	ERVL	chr7	123228883	123228885	+	ENSMUST00000127655.7,ENSMUSG00000030769.15	Slc5a11	ENSMUSG00000030769.15	ENSMUST00000127655.7	protein_coding	chr7:123228884-123248022
chr7	123382672	123382771	-	U6	snRNA	snRNA	chr7	123382770	123382772	-	ENSMUST00000157824.1,ENSMUSG00000088449.1	Gm23559	ENSMUSG00000088449.1	ENSMUST00000157824.1	snRNA	chr7:123382669-123382771
chr7	123427761	123427965	-	B3	SINE	B2	chr7	123427859	123427861	+	ENSMUST00000206727.1,ENSMUSG00000030763.7	Lcmt1	ENSMUSG00000030763.7	ENSMUST00000206727.1	protein_coding	chr7:123427860-123430348
chr7	123968196	123968600	+	RMER15-int	LTR	ERVL	chr7	123968380	123968382	-	ENSMUST00000182054.1,ENSMUSG00000098160.3	Gm26974	ENSMUSG00000098160.3	ENSMUST00000182054.1	processed_transcript	chr7:123966398-123968381
chr7	124186613	124186722	+	MIR	SINE	MIR	chr7	124186717	124186719	+	ENSMUST00000151884.1,ENSMUSG00000085899.1	Gm15338	ENSMUSG00000085899.1	ENSMUST00000151884.1	sense_intronic	chr7:124186718-124290270
chr7	124493189	124494589	+	RMER1A	Other	Other	chr7	124494300	124494302	-	ENSMUST00000153577.1,ENSMUSG00000085892.1	Gm15339	ENSMUSG00000085892.1	ENSMUST00000153577.1	lincRNA	chr7:124476541-124494301
chr7	124907559	124907628	+	polypurine	Low_complexity	Low_complexity	chr7	124907608	124907610	+	ENSMUST00000205944.1,ENSMUSG00000108623.1	Gm45092	ENSMUSG00000108623.1	ENSMUST00000205944.1	lincRNA	chr7:124907609-124914418
chr7	125069306	125069747	+	BGLII_B2	LTR	ERVK	chr7	125069490	125069492	-	ENSMUST00000206859.1,ENSMUSG00000108407.1	Gm45093	ENSMUSG00000108407.1	ENSMUST00000206859.1	TEC	chr7:125067029-125069491
chr7	125572058	125572143	+	B4A	SINE	B4	chr7	125572116	125572118	-	ENSMUST00000205394.1,ENSMUSG00000108524.1	Gm44876	ENSMUSG00000108524.1	ENSMUST00000205394.1	antisense	chr7:125570776-125572117
chr7	125706535	125706634	+	PB1D9	SINE	Alu	chr7	125706535	125706537	-	ENSMUST00000206127.1,ENSMUSG00000032777.9	Gtf3c1	ENSMUSG00000032777.9	ENSMUST00000206127.1	protein_coding	chr7:125693229-125706536
chr7	126064381	126064675	+	ORR1D1	LTR	ERVL-MaLR	chr7	126064446	126064448	-	ENSMUST00000206586.1,ENSMUSG00000108376.1	Gm44874	ENSMUSG00000108376.1	ENSMUST00000206586.1	TEC	chr7:126062906-126064447
chr7	126181356	126181684	+	MTE2b	LTR	ERVL-MaLR	chr7	126181636	126181638	-	ENSMUST00000166368.1,ENSMUSG00000000131.15	Xpo6	ENSMUSG00000000131.15	ENSMUST00000166368.1	protein_coding	chr7:126169268-126181637
chr7	126395792	126395860	+	G-rich	Low_complexity	Low_complexity	chr7	126395857	126395859	+	ENSMUST00000206502.1,ENSMUSG00000108420.1	Gm45141	ENSMUSG00000108420.1	ENSMUST00000206502.1	TEC	chr7:126395858-126397745
chr7	126475022	126475053	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	126475049	126475051	-	ENSMUST00000205497.1,ENSMUSG00000030733.10	Sh2b1	ENSMUSG00000030733.10	ENSMUST00000205497.1	protein_coding	chr7:126467005-126475050
chr7	126563886	126563980	-	U6	snRNA	snRNA	chr7	126563979	126563981	-	ENSMUST00000122504.1,ENSMUSG00000084453.1	Gm24596	ENSMUSG00000084453.1	ENSMUST00000122504.1	snRNA	chr7:126563874-126563980
chr7	126663622	126663879	+	L1MC2	LINE	L1	chr7	126663792	126663794	+	ENSMUST00000138794.2,ENSMUSG00000030714.14	Sgf29	ENSMUSG00000030714.14	ENSMUST00000138794.2	protein_coding	chr7:126663793-126670688
chr7	126749481	126749556	+	B1_Mm	SINE	Alu	chr7	126749554	126749556	+	ENSMUST00000205725.1,ENSMUSG00000108649.1	Gm44855	ENSMUSG00000108649.1	ENSMUST00000205725.1	processed_pseudogene	chr7:126749555-126749916
chr7	126759520	126759685	+	G-rich	Low_complexity	Low_complexity	chr7	126759600	126759602	+	ENSMUST00000050201.10,ENSMUSG00000063065.13	Mapk3	ENSMUSG00000063065.13	ENSMUST00000050201.10	protein_coding	chr7:126759601-126764845
chr7	126759520	126759685	+	G-rich	Low_complexity	Low_complexity	chr7	126759600	126759602	+	ENSMUST00000057669.15,ENSMUSG00000063065.13	Mapk3	ENSMUSG00000063065.13	ENSMUST00000057669.15	protein_coding	chr7:126759601-126765819
chr7	126759520	126759685	+	G-rich	Low_complexity	Low_complexity	chr7	126759650	126759652	+	ENSMUST00000205657.1,ENSMUSG00000063065.13	Mapk3	ENSMUSG00000063065.13	ENSMUST00000205657.1	protein_coding	chr7:126759651-126764844
chr7	126759520	126759685	+	G-rich	Low_complexity	Low_complexity	chr7	126759659	126759661	+	ENSMUST00000206875.1,ENSMUSG00000063065.13	Mapk3	ENSMUSG00000063065.13	ENSMUST00000206875.1	protein_coding	chr7:126759660-126761007
chr7	126835247	126839341	+	MurERV4_19-int	LTR	ERVK	chr7	126837211	126837213	+	ENSMUST00000205493.1,ENSMUSG00000108583.1	Gm44854	ENSMUSG00000108583.1	ENSMUST00000205493.1	lincRNA	chr7:126837212-126846388
chr7	126847946	126848009	+	GC_rich	Low_complexity	Low_complexity	chr7	126847961	126847963	+	ENSMUST00000139174.1,ENSMUSG00000052301.14	Doc2a	ENSMUSG00000052301.14	ENSMUST00000139174.1	protein_coding	chr7:126847962-126848835
chr7	126863708	126863879	+	G-rich	Low_complexity	Low_complexity	chr7	126863842	126863844	+	ENSMUST00000138793.1,ENSMUSG00000042606.9	Hirip3	ENSMUSG00000042606.9	ENSMUST00000138793.1	protein_coding	chr7:126863843-126864528
chr7	126915721	126915826	-	U6	snRNA	snRNA	chr7	126915825	126915827	-	ENSMUST00000082800.1,ENSMUSG00000064734.1	Gm23445	ENSMUSG00000064734.1	ENSMUST00000082800.1	snRNA	chr7:126915720-126915826
chr7	126938760	126938973	+	MLT1F-int	LTR	ERVL-MaLR	chr7	126938885	126938887	+	ENSMUST00000206197.1,ENSMUSG00000108543.1	Gm44735	ENSMUSG00000108543.1	ENSMUST00000206197.1	TEC	chr7:126938886-126940637
chr7	127011844	127011906	-	RSINE1	SINE	B4	chr7	127011864	127011866	-	ENSMUST00000133172.1,ENSMUSG00000030681.18	Mvp	ENSMUSG00000030681.18	ENSMUST00000133172.1	protein_coding	chr7:126998542-127011865
chr7	127021063	127021097	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	127021096	127021098	-	ENSMUST00000201606.1,ENSMUSG00000107068.1	Gm42742	ENSMUSG00000107068.1	ENSMUST00000201606.1	protein_coding	chr7:127016231-127021097
chr7	127021063	127021097	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	127021088	127021090	-	ENSMUST00000161728.1,ENSMUSG00000107068.1	Gm42742	ENSMUSG00000107068.1	ENSMUST00000161728.1	protein_coding	chr7:127016771-127021089
chr7	127026458	127026696	+	GC_rich	Low_complexity	Low_complexity	chr7	127026525	127026527	-	ENSMUST00000205568.1,ENSMUSG00000030678.7	Maz	ENSMUSG00000030678.7	ENSMUST00000205568.1	protein_coding	chr7:127022130-127026526
chr7	127026458	127026696	+	GC_rich	Low_complexity	Low_complexity	chr7	127026571	127026573	-	ENSMUST00000205461.1,ENSMUSG00000030678.7	Maz	ENSMUSG00000030678.7	ENSMUST00000205461.1	protein_coding	chr7:127022890-127026572
chr7	127027022	127027106	+	G-rich	Low_complexity	Low_complexity	chr7	127027023	127027025	-	ENSMUST00000206254.1,ENSMUSG00000030678.7	Maz	ENSMUSG00000030678.7	ENSMUST00000206254.1	protein_coding	chr7:127022135-127027024
chr7	127027022	127027106	+	G-rich	Low_complexity	Low_complexity	chr7	127027036	127027038	-	ENSMUST00000206291.1,ENSMUSG00000030678.7	Maz	ENSMUSG00000030678.7	ENSMUST00000206291.1	protein_coding	chr7:127025887-127027037
chr7	127031384	127031675	+	B4A	SINE	B4	chr7	127031467	127031469	+	ENSMUST00000206873.1,ENSMUSG00000108617.1	Gm31749	ENSMUSG00000108617.1	ENSMUST00000206873.1	antisense	chr7:127031468-127035291
chr7	127046942	127047346	-	ORR1C2	LTR	ERVL-MaLR	chr7	127047251	127047253	-	ENSMUST00000196702.1,ENSMUSG00000106521.1	Gm44343	ENSMUSG00000106521.1	ENSMUST00000196702.1	miRNA	chr7:127047163-127047252
chr7	127068062	127069479	+	ORR1B1-int	LTR	ERVL-MaLR	chr7	127068455	127068457	+	ENSMUST00000206939.1,ENSMUSG00000108327.1	Gm44939	ENSMUSG00000108327.1	ENSMUST00000206939.1	lincRNA	chr7:127068456-127071039
chr7	127079480	127079587	+	U6	snRNA	snRNA	chr7	127079480	127079482	+	ENSMUST00000082495.1,ENSMUSG00000064429.1	Gm22747	ENSMUSG00000064429.1	ENSMUST00000082495.1	snRNA	chr7:127079481-127079587
chr7	127086155	127087526	-	RLTR1B-int	LTR	ERV1	chr7	127087327	127087329	-	ENSMUST00000205559.1,ENSMUSG00000049350.6	Zg16	ENSMUSG00000049350.6	ENSMUST00000205559.1	protein_coding	chr7:127050476-127087328
chr7	127086155	127087526	-	RLTR1B-int	LTR	ERV1	chr7	127087285	127087287	-	ENSMUST00000205623.1,ENSMUSG00000049350.6	Zg16	ENSMUSG00000049350.6	ENSMUST00000205623.1	protein_coding	chr7:127063735-127087286
chr7	127173189	127173375	-	B2_Mm1t	SINE	B2	chr7	127173204	127173206	-	ENSMUST00000206225.1,ENSMUSG00000108717.1	Gm44940	ENSMUSG00000108717.1	ENSMUST00000206225.1	TEC	chr7:127171959-127173205
chr7	127191025	127191166	+	B1_Mus2	SINE	Alu	chr7	127191026	127191028	+	ENSMUST00000175164.2,ENSMUSG00000092905.2	Gm25735	ENSMUSG00000092905.2	ENSMUST00000175164.2	misc_RNA	chr7:127191027-127191241
chr7	127200846	127201050	-	ID_B1	SINE	B4	chr7	127200953	127200955	-	ENSMUST00000137987.7,ENSMUSG00000042492.12	Tbc1d10b	ENSMUSG00000042492.12	ENSMUST00000137987.7	protein_coding	chr7:127199822-127200954
chr7	127208464	127208538	+	GC_rich	Low_complexity	Low_complexity	chr7	127208467	127208469	-	ENSMUST00000120705.2,ENSMUSG00000042492.12	Tbc1d10b	ENSMUSG00000042492.12	ENSMUST00000120705.2	protein_coding	chr7:127197459-127208468
chr7	127212594	127212784	+	ID_B1	SINE	B4	chr7	127212678	127212680	+	ENSMUST00000127710.2,ENSMUSG00000030672.12	Mylpf	ENSMUSG00000030672.12	ENSMUST00000127710.2	protein_coding	chr7:127212679-127213487
chr7	127287592	127287932	+	ORR1B2	LTR	ERVL-MaLR	chr7	127287728	127287730	+	ENSMUST00000205924.1,ENSMUSG00000108760.1	Gm31897	ENSMUSG00000108760.1	ENSMUST00000205924.1	lincRNA	chr7:127287729-127290207
chr7	127309484	127309642	-	MTEb	LTR	ERVL-MaLR	chr7	127309517	127309519	+	ENSMUST00000118405.1,ENSMUSG00000030830.18	Itgal	ENSMUSG00000030830.18	ENSMUST00000118405.1	protein_coding	chr7:127309518-127335137
chr7	127434127	127434460	+	MurERV4-int	LTR	ERVK	chr7	127434421	127434423	+	ENSMUST00000206354.1,ENSMUSG00000108483.1	Gm45184	ENSMUSG00000108483.1	ENSMUST00000206354.1	lincRNA	chr7:127434422-127439392
chr7	127455301	127455666	-	ORR1B1	LTR	ERVL-MaLR	chr7	127455468	127455470	+	ENSMUST00000205704.1,ENSMUSG00000108465.1	Gm45110	ENSMUSG00000108465.1	ENSMUST00000205704.1	TEC	chr7:127455469-127456870
chr7	127459602	127461267	+	MMERVK9E_I-int	LTR	ERVK	chr7	127459610	127459612	+	ENSMUST00000128805.1,ENSMUSG00000030822.15	Prr14	ENSMUSG00000030822.15	ENSMUST00000128805.1	protein_coding	chr7:127459611-127470996
chr7	127479510	127479593	+	GA-rich	Low_complexity	Low_complexity	chr7	127479591	127479593	+	ENSMUST00000206394.1,ENSMUSG00000042423.9	Fbrs	ENSMUSG00000042423.9	ENSMUST00000206394.1	protein_coding	chr7:127479592-127491502
chr7	127486997	127487169	+	MIRb	SINE	MIR	chr7	127487062	127487064	+	ENSMUST00000205967.1,ENSMUSG00000042423.9	Fbrs	ENSMUSG00000042423.9	ENSMUST00000205967.1	protein_coding	chr7:127487063-127487953
chr7	127512443	127512474	+	GC_rich	Low_complexity	Low_complexity	chr7	127512464	127512466	+	ENSMUST00000186672.6,ENSMUSG00000053877.12	Srcap	ENSMUSG00000053877.12	ENSMUST00000186672.6	protein_coding	chr7:127512465-127539236
chr7	127533493	127533869	-	BGLII_Mus	LTR	ERVK	chr7	127533759	127533761	+	ENSMUST00000189812.1,ENSMUSG00000053877.12	Srcap	ENSMUSG00000053877.12	ENSMUST00000189812.1	protein_coding	chr7:127533760-127535792
chr7	127561368	127561396	+	(A)n	Simple_repeat	Simple_repeat	chr7	127561389	127561391	+	ENSMUST00000084563.10,ENSMUSG00000106715.3	Tmem265	ENSMUSG00000106715.3	ENSMUST00000084563.10	protein_coding	chr7:127561390-127565270
chr7	127573598	127573682	+	C-rich	Low_complexity	Low_complexity	chr7	127573641	127573643	+	ENSMUST00000138158.7,ENSMUSG00000030815.11	Phkg2	ENSMUSG00000030815.11	ENSMUST00000138158.7	protein_coding	chr7:127573642-127582398
chr7	127579141	127579290	+	B1_Mus2	SINE	Alu	chr7	127579279	127579281	+	ENSMUST00000133621.1,ENSMUSG00000030815.11	Phkg2	ENSMUSG00000030815.11	ENSMUST00000133621.1	protein_coding	chr7:127579280-127582419
chr7	127614854	127614883	+	GC_rich	Low_complexity	Low_complexity	chr7	127614866	127614868	-	ENSMUST00000151107.7,ENSMUSG00000045639.14	Zfp629	ENSMUSG00000045639.14	ENSMUST00000151107.7	protein_coding	chr7:127608455-127614867
chr7	127658212	127658256	+	(TG)n	Simple_repeat	Simple_repeat	chr7	127658233	127658235	-	ENSMUST00000206375.1,ENSMUSG00000108766.1	Gm44760	ENSMUSG00000108766.1	ENSMUST00000206375.1	TEC	chr7:127657062-127658234
chr7	127696981	127697530	+	MYSERV-int	LTR	ERVK	chr7	127697030	127697032	+	ENSMUST00000205284.1,ENSMUSG00000108801.1	Gm39090	ENSMUSG00000108801.1	ENSMUST00000205284.1	lincRNA	chr7:127697031-127700793
chr7	127708705	127708805	+	C-rich	Low_complexity	Low_complexity	chr7	127708784	127708786	-	ENSMUST00000106282.7,ENSMUSG00000030814.17	Bcl7c	ENSMUSG00000030814.17	ENSMUST00000106282.7	protein_coding	chr7:127661456-127708785
chr7	127708705	127708805	+	C-rich	Low_complexity	Low_complexity	chr7	127708725	127708727	-	ENSMUST00000207019.1,ENSMUSG00000030814.17	Bcl7c	ENSMUSG00000030814.17	ENSMUST00000207019.1	protein_coding	chr7:127704978-127708726
chr7	127731967	127732465	-	MT2_Mm	LTR	ERVL	chr7	127732165	127732167	-	ENSMUST00000206038.1,ENSMUSG00000060034.5	Ctf2	ENSMUSG00000060034.5	ENSMUST00000206038.1	protein_coding	chr7:127718106-127732166
chr7	127777388	127777425	+	GC_rich	Low_complexity	Low_complexity	chr7	127777388	127777390	+	ENSMUST00000126761.7,ENSMUSG00000042308.14	Setd1a	ENSMUSG00000042308.14	ENSMUST00000126761.7	protein_coding	chr7:127777389-127783701
chr7	127777388	127777425	+	GC_rich	Low_complexity	Low_complexity	chr7	127777388	127777390	+	ENSMUST00000047157.12,ENSMUSG00000042308.14	Setd1a	ENSMUSG00000042308.14	ENSMUST00000047157.12	protein_coding	chr7:127777389-127800115
chr7	127813455	127813602	+	B1_Mm	SINE	Alu	chr7	127813506	127813508	-	ENSMUST00000206297.1,ENSMUSG00000108808.1	Gm45204	ENSMUSG00000108808.1	ENSMUST00000206297.1	TEC	chr7:127812154-127813507
chr7	127876660	127876784	+	PB1D7	SINE	Alu	chr7	127876779	127876781	-	ENSMUST00000106263.7,ENSMUSG00000049728.14	Zfp668	ENSMUSG00000049728.14	ENSMUST00000106263.7	protein_coding	chr7:127865717-127876780
chr7	127876660	127876784	+	PB1D7	SINE	Alu	chr7	127876776	127876778	-	ENSMUST00000106262.1,ENSMUSG00000049728.14	Zfp668	ENSMUSG00000049728.14	ENSMUST00000106262.1	protein_coding	chr7:127865993-127876777
chr7	127897421	127898269	+	RMER19B	LTR	ERVK	chr7	127897567	127897569	+	ENSMUST00000206633.1,ENSMUSG00000108479.1	2200002A13Rik	ENSMUSG00000108479.1	ENSMUST00000206633.1	TEC	chr7:127897568-127898276
chr7	127914052	127914223	-	B2_Mm2	SINE	B2	chr7	127914154	127914156	+	ENSMUST00000205357.1,ENSMUSG00000030801.10	Kat8	ENSMUSG00000030801.10	ENSMUST00000205357.1	protein_coding	chr7:127914155-127920511
chr7	127971786	127971807	+	(T)n	Simple_repeat	Simple_repeat	chr7	127971786	127971788	+	ENSMUST00000123151.7,ENSMUSG00000030795.18	Fus	ENSMUSG00000030795.18	ENSMUST00000123151.7	protein_coding	chr7:127971787-127974327
chr7	127983059	127983170	-	B1_Mur4	SINE	Alu	chr7	127983078	127983080	+	ENSMUST00000079045.2,ENSMUSG00000030795.18	Fus	ENSMUSG00000030795.18	ENSMUST00000079045.2	protein_coding	chr7:127983079-127985701
chr7	127993267	127993289	+	(T)n	Simple_repeat	Simple_repeat	chr7	127993268	127993270	+	ENSMUST00000205745.1,ENSMUSG00000108353.1	Gm45205	ENSMUSG00000108353.1	ENSMUST00000205745.1	TEC	chr7:127993269-127996598
chr7	128288599	128289068	+	RLTR28	LTR	ERVL	chr7	128288704	128288706	-	ENSMUST00000124216.1,ENSMUSG00000030780.15	BC017158	ENSMUSG00000030780.15	ENSMUST00000124216.1	protein_coding	chr7:128276301-128288705
chr7	128393654	128393790	+	CT-rich	Low_complexity	Low_complexity	chr7	128393684	128393686	-	ENSMUST00000134144.1,ENSMUSG00000030844.11	Rgs10	ENSMUSG00000030844.11	ENSMUST00000134144.1	protein_coding	chr7:128373885-128393685
chr7	128461187	128461236	+	(GGGGA)n	Simple_repeat	Simple_repeat	chr7	128461208	128461210	-	ENSMUST00000205835.1,ENSMUSG00000030846.15	Tial1	ENSMUSG00000030846.15	ENSMUST00000205835.1	protein_coding	chr7:128442280-128461209
chr7	128461330	128461355	+	(GGA)n	Simple_repeat	Simple_repeat	chr7	128461354	128461356	-	ENSMUST00000033135.8,ENSMUSG00000030846.15	Tial1	ENSMUSG00000030846.15	ENSMUST00000033135.8	protein_coding	chr7:128442280-128461355
chr7	128461330	128461355	+	(GGA)n	Simple_repeat	Simple_repeat	chr7	128461345	128461347	-	ENSMUST00000141126.7,ENSMUSG00000030846.15	Tial1	ENSMUSG00000030846.15	ENSMUST00000141126.7	protein_coding	chr7:128442311-128461346
chr7	128478009	128478144	+	B1_Mus1	SINE	Alu	chr7	128478137	128478139	-	ENSMUST00000175384.1,ENSMUSG00000093125.1	Gm24365	ENSMUSG00000093125.1	ENSMUST00000175384.1	miRNA	chr7:128478014-128478138
chr7	128538639	128538953	-	MER31A	LTR	ERV1	chr7	128538931	128538933	+	ENSMUST00000206512.1,ENSMUSG00000108614.1	2610306O10Rik	ENSMUSG00000108614.1	ENSMUST00000206512.1	TEC	chr7:128538932-128539543
chr7	128593307	128593443	-	B1_Mus1	SINE	Alu	chr7	128593342	128593344	-	ENSMUST00000205396.1,ENSMUSG00000108795.1	Gm45121	ENSMUSG00000108795.1	ENSMUST00000205396.1	lincRNA	chr7:128590926-128593343
chr7	128593312	128593582	-	ID_B1	SINE	B4	chr7	128593342	128593344	-	ENSMUST00000205396.1,ENSMUSG00000108795.1	Gm45121	ENSMUSG00000108795.1	ENSMUST00000205396.1	lincRNA	chr7:128590926-128593343
chr7	128687475	128687549	+	(TG)n	Simple_repeat	Simple_repeat	chr7	128687545	128687547	+	ENSMUST00000151237.4,ENSMUSG00000042105.18	Inpp5f	ENSMUSG00000042105.18	ENSMUST00000151237.4	protein_coding	chr7:128687546-128696359
chr7	128721906	128722046	-	B1_Mur4	SINE	Alu	chr7	128722043	128722045	-	ENSMUST00000205692.1,ENSMUSG00000108388.1	Gm44673	ENSMUSG00000108388.1	ENSMUST00000205692.1	TEC	chr7:128721049-128722044
chr7	128728336	128728525	-	L1MD	LINE	L1	chr7	128728393	128728395	+	ENSMUST00000206159.1,ENSMUSG00000108648.1	Gm44674	ENSMUSG00000108648.1	ENSMUST00000206159.1	antisense	chr7:128728394-128729522
chr7	128774902	128774963	-	5S	rRNA	rRNA	chr7	128774962	128774964	-	ENSMUST00000104095.1,ENSMUSG00000077283.1	n-R5s158	ENSMUSG00000077283.1	ENSMUST00000104095.1	rRNA	chr7:128774846-128774963
chr7	128794945	128795285	+	ORR1C1	LTR	ERVL-MaLR	chr7	128795193	128795195	+	ENSMUST00000205528.1,ENSMUSG00000108600.1	Gm32884	ENSMUSG00000108600.1	ENSMUST00000205528.1	lincRNA	chr7:128795194-128928013
chr7	128826112	128826580	+	MT2_Mm	LTR	ERVL	chr7	128826346	128826348	+	ENSMUST00000116713.1,ENSMUSG00000080363.1	Gm25778	ENSMUSG00000080363.1	ENSMUST00000116713.1	miRNA	chr7:128826347-128826467
chr7	129658587	129658948	+	MLT1I	LTR	ERVL-MaLR	chr7	129658927	129658929	+	ENSMUST00000206679.1,ENSMUSG00000108580.1	Gm39094	ENSMUSG00000108580.1	ENSMUST00000206679.1	lincRNA	chr7:129658928-129731647
chr7	129667111	129667610	+	MT2_Mm	LTR	ERVL	chr7	129667404	129667406	+	ENSMUST00000206954.1,ENSMUSG00000108481.1	Gm33248	ENSMUSG00000108481.1	ENSMUST00000206954.1	sense_intronic	chr7:129667405-129693128
chr7	129667111	129667610	+	MT2_Mm	LTR	ERVL	chr7	129667424	129667426	+	ENSMUST00000205836.1,ENSMUSG00000108481.1	Gm33248	ENSMUSG00000108481.1	ENSMUST00000205836.1	sense_intronic	chr7:129667425-129693400
chr7	130035093	130035193	+	U6	snRNA	snRNA	chr7	130035093	130035095	+	ENSMUST00000083829.1,ENSMUSG00000065763.1	Gm23847	ENSMUSG00000065763.1	ENSMUST00000083829.1	snRNA	chr7:130035094-130035203
chr7	130266213	130266287	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	130266262	130266264	-	ENSMUST00000120187.8,ENSMUSG00000030849.18	Fgfr2	ENSMUSG00000030849.18	ENSMUST00000120187.8	protein_coding	chr7:130162451-130266263
chr7	130266213	130266287	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	130266244	130266246	-	ENSMUST00000153166.7,ENSMUSG00000030849.18	Fgfr2	ENSMUSG00000030849.18	ENSMUST00000153166.7	protein_coding	chr7:130162512-130266245
chr7	130266213	130266287	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	130266244	130266246	-	ENSMUST00000117872.7,ENSMUSG00000030849.18	Fgfr2	ENSMUSG00000030849.18	ENSMUST00000117872.7	protein_coding	chr7:130162512-130266245
chr7	130266213	130266287	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	130266254	130266256	-	ENSMUST00000208844.1,ENSMUSG00000030849.18	Fgfr2	ENSMUSG00000030849.18	ENSMUST00000208844.1	protein_coding	chr7:130262275-130266255
chr7	130519471	130519535	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	130519529	130519531	-	ENSMUST00000035458.14,ENSMUSG00000030850.17	Ate1	ENSMUSG00000030850.17	ENSMUST00000035458.14	protein_coding	chr7:130391493-130519530
chr7	130519471	130519535	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	130519509	130519511	-	ENSMUST00000207141.1,ENSMUSG00000030850.17	Ate1	ENSMUSG00000030850.17	ENSMUST00000207141.1	protein_coding	chr7:130509138-130519510
chr7	131146281	131146347	+	L3	LINE	CR1	chr7	131146313	131146315	-	ENSMUST00000070980.3,ENSMUSG00000013668.9	4933402N03Rik	ENSMUSG00000013668.9	ENSMUST00000070980.3	protein_coding	chr7:131137713-131146314
chr7	131384219	131384347	+	MER63B	DNA	hAT-Blackjack	chr7	131384256	131384258	+	ENSMUST00000148533.1,ENSMUSG00000063179.13	Pstk	ENSMUSG00000063179.13	ENSMUST00000148533.1	protein_coding	chr7:131384257-131387727
chr7	131385751	131386622	+	L1MB8	LINE	L1	chr7	131385945	131385947	-	ENSMUST00000207934.1,ENSMUSG00000108883.1	Gm44623	ENSMUSG00000108883.1	ENSMUST00000207934.1	antisense	chr7:131385513-131385946
chr7	131396023	131396309	+	L1_Mus1	LINE	L1	chr7	131396257	131396259	+	ENSMUST00000208700.1,ENSMUSG00000109570.1	Gm44624	ENSMUSG00000109570.1	ENSMUST00000208700.1	TEC	chr7:131396258-131398535
chr7	131410425	131410486	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	131410472	131410474	-	ENSMUST00000207243.1,ENSMUSG00000040167.16	Ikzf5	ENSMUSG00000040167.16	ENSMUST00000207243.1	protein_coding	chr7:131392647-131410473
chr7	131429714	131429863	+	B1_Mus1	SINE	Alu	chr7	131429810	131429812	+	ENSMUST00000156261.1,ENSMUSG00000030861.15	Acadsb	ENSMUSG00000030861.15	ENSMUST00000156261.1	protein_coding	chr7:131429811-131446209
chr7	131440417	131440499	+	L2a	LINE	L2	chr7	131440470	131440472	+	ENSMUST00000208795.1,ENSMUSG00000109399.1	Gm44982	ENSMUSG00000109399.1	ENSMUST00000208795.1	sense_intronic	chr7:131440471-131440941
chr7	131472137	131473716	+	L1_Mus2	LINE	L1	chr7	131472866	131472868	-	ENSMUST00000207802.1,ENSMUSG00000108989.1	Gm44984	ENSMUSG00000108989.1	ENSMUST00000207802.1	processed_pseudogene	chr7:131472474-131472867
chr7	131493770	131494768	+	L1Md_T	LINE	L1	chr7	131493902	131493904	-	ENSMUST00000207824.1,ENSMUSG00000109087.1	Gm45105	ENSMUSG00000109087.1	ENSMUST00000207824.1	processed_pseudogene	chr7:131493507-131493903
chr7	131966337	131966472	+	GA-rich	Low_complexity	Low_complexity	chr7	131966459	131966461	+	ENSMUST00000045840.4,ENSMUSG00000040125.4	Gpr26	ENSMUSG00000040125.4	ENSMUST00000045840.4	protein_coding	chr7:131966460-131994405
chr7	132058640	132058729	+	5S	rRNA	rRNA	chr7	132058640	132058642	+	ENSMUST00000122681.1,ENSMUSG00000084630.1	n-R5s159	ENSMUSG00000084630.1	ENSMUST00000122681.1	rRNA	chr7:132058641-132058760
chr7	132154728	132154802	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	132154738	132154740	-	ENSMUST00000033149.4,ENSMUSG00000030862.13	Cpxm2	ENSMUSG00000030862.13	ENSMUST00000033149.4	protein_coding	chr7:132042816-132154739
chr7	132154732	132154786	+	G-rich	Low_complexity	Low_complexity	chr7	132154738	132154740	-	ENSMUST00000033149.4,ENSMUSG00000030862.13	Cpxm2	ENSMUSG00000030862.13	ENSMUST00000033149.4	protein_coding	chr7:132042816-132154739
chr7	132839979	132840288	+	L1MEg	LINE	L1	chr7	132840222	132840224	-	ENSMUST00000211468.1,ENSMUSG00000110159.1	Gm45501	ENSMUSG00000110159.1	ENSMUST00000211468.1	TEC	chr7:132837698-132840223
chr7	132879244	132879386	+	B1_Mur3	SINE	Alu	chr7	132879374	132879376	+	ENSMUST00000138436.1,ENSMUSG00000030965.19	Abraxas2	ENSMUSG00000030965.19	ENSMUST00000138436.1	protein_coding	chr7:132879375-132885110
chr7	133123432	133123481	+	(TTCCC)n	Simple_repeat	Simple_repeat	chr7	133123471	133123473	-	ENSMUST00000166400.7,ENSMUSG00000030970.16	Ctbp2	ENSMUSG00000030970.16	ENSMUST00000166400.7	protein_coding	chr7:133014467-133123472
chr7	133128173	133128261	+	MT2B2	LTR	ERVL	chr7	133128250	133128252	+	ENSMUST00000209850.1,ENSMUSG00000109816.1	4930483O08Rik	ENSMUSG00000109816.1	ENSMUST00000209850.1	lincRNA	chr7:133128251-133142457
chr7	133333095	133333442	-	MTD	LTR	ERVL-MaLR	chr7	133333200	133333202	-	ENSMUST00000209700.1,ENSMUSG00000109619.1	Gm45672	ENSMUSG00000109619.1	ENSMUST00000209700.1	lincRNA	chr7:133319985-133333201
chr7	133709996	133710116	-	B1_Mus2	SINE	Alu	chr7	133710071	133710073	-	ENSMUST00000151348.1,ENSMUSG00000030979.13	Uros	ENSMUSG00000030979.13	ENSMUST00000151348.1	protein_coding	chr7:133701895-133710072
chr7	133789283	133789641	+	ORR1B1	LTR	ERVL-MaLR	chr7	133789484	133789486	+	ENSMUST00000211077.1,ENSMUSG00000053111.13	Fank1	ENSMUSG00000053111.13	ENSMUST00000211077.1	protein_coding	chr7:133789485-133869334
chr7	134100191	134100410	-	ID_B1	SINE	B4	chr7	134100277	134100279	-	ENSMUST00000206856.1,ENSMUSG00000108478.1	Gm19514	ENSMUSG00000108478.1	ENSMUST00000206856.1	TEC	chr7:134095790-134100278
chr7	134385451	134385931	-	MT2B	LTR	ERVL	chr7	134385660	134385662	-	ENSMUST00000174271.1,ENSMUSG00000030994.15	D7Ertd443e	ENSMUSG00000030994.15	ENSMUST00000174271.1	protein_coding	chr7:134354303-134385661
chr7	134938411	134938436	+	(GGA)n	Simple_repeat	Simple_repeat	chr7	134938429	134938431	-	ENSMUST00000171394.2,ENSMUSG00000073805.5	Fam196a	ENSMUSG00000073805.5	ENSMUST00000171394.2	protein_coding	chr7:134884055-134938430
chr7	135258459	135258785	+	IAPLTR3	LTR	ERVK	chr7	135258702	135258704	+	ENSMUST00000210907.1,ENSMUSG00000073804.5	Nps	ENSMUSG00000073804.5	ENSMUST00000210907.1	protein_coding	chr7:135258703-135272942
chr7	135709118	135709259	-	B2_Mm2	SINE	B2	chr7	135709193	135709195	+	ENSMUST00000211437.1,ENSMUSG00000109910.1	Gm45240	ENSMUSG00000109910.1	ENSMUST00000211437.1	TEC	chr7:135709194-135709867
chr7	135716334	135716418	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	135716360	135716362	-	ENSMUST00000033310.8,ENSMUSG00000031004.8	Mki67	ENSMUSG00000031004.8	ENSMUST00000033310.8	protein_coding	chr7:135689784-135716361
chr7	135742103	135742860	+	RMER6A	LTR	ERVK	chr7	135742675	135742677	+	ENSMUST00000209956.1,ENSMUSG00000109831.1	Gm36431	ENSMUSG00000109831.1	ENSMUST00000209956.1	lincRNA	chr7:135742676-135833187
chr7	135853620	135853683	+	GC_rich	Low_complexity	Low_complexity	chr7	135853681	135853683	+	ENSMUST00000211371.1,ENSMUSG00000109898.1	6330420H09Rik	ENSMUSG00000109898.1	ENSMUST00000211371.1	lincRNA	chr7:135853682-135855710
chr7	135892602	135892985	+	MTE2a	LTR	ERVL-MaLR	chr7	135892814	135892816	+	ENSMUST00000209826.1,ENSMUSG00000110004.1	Gm45440	ENSMUSG00000110004.1	ENSMUST00000209826.1	TEC	chr7:135892815-135894469
chr7	136288582	136288838	+	L1ME3B	LINE	L1	chr7	136288655	136288657	+	ENSMUST00000209393.1,ENSMUSG00000109792.1	Gm45426	ENSMUSG00000109792.1	ENSMUST00000209393.1	TEC	chr7:136288656-136292327
chr7	136657123	136657219	+	L1Md_F2	LINE	L1	chr7	136657208	136657210	+	ENSMUST00000210286.1,ENSMUSG00000109894.1	Gm5904	ENSMUSG00000109894.1	ENSMUST00000210286.1	processed_pseudogene	chr7:136657209-136658073
chr7	136710600	136710783	-	LTR90A	LTR	LTR	chr7	136710603	136710605	-	ENSMUST00000211142.1,ENSMUSG00000110101.1	Gm6249	ENSMUSG00000110101.1	ENSMUST00000211142.1	lincRNA	chr7:136667955-136710604
chr7	138101432	138101539	-	U6	snRNA	snRNA	chr7	138101538	138101540	-	ENSMUST00000082641.1,ENSMUSG00000064575.1	Gm25798	ENSMUSG00000064575.1	ENSMUST00000082641.1	snRNA	chr7:138101433-138101539
chr7	138700643	138700919	+	MLT1D	LTR	ERVL-MaLR	chr7	138700902	138700904	+	ENSMUST00000211166.1,ENSMUSG00000109802.1	Gm30808	ENSMUSG00000109802.1	ENSMUST00000211166.1	lincRNA	chr7:138700903-138703297
chr7	138860143	138860850	-	L1MB7	LINE	L1	chr7	138860836	138860838	+	ENSMUST00000174090.1,ENSMUSG00000041769.13	Ppp2r2d	ENSMUSG00000041769.13	ENSMUST00000174090.1	protein_coding	chr7:138860837-138874270
chr7	138940710	138940731	+	GC_rich	Low_complexity	Low_complexity	chr7	138940729	138940731	+	ENSMUST00000106111.7,ENSMUSG00000056856.12	Jakmip3	ENSMUSG00000056856.12	ENSMUST00000106111.7	protein_coding	chr7:138940730-139026888
chr7	139064506	139064652	-	L1MD	LINE	L1	chr7	139064640	139064642	+	ENSMUST00000171843.1,ENSMUSG00000056856.12	Jakmip3	ENSMUSG00000056856.12	ENSMUST00000171843.1	protein_coding	chr7:139064641-139083976
chr7	139188517	139188586	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	139188516	139188518	-	ENSMUST00000016125.11,ENSMUSG00000015981.12	Stk32c	ENSMUSG00000015981.12	ENSMUST00000016125.11	protein_coding	chr7:139103638-139188517
chr7	139220798	139220946	-	B1_Mus2	SINE	Alu	chr7	139220897	139220899	+	ENSMUST00000130248.1,ENSMUSG00000015980.14	Lrrc27	ENSMUSG00000015980.14	ENSMUST00000130248.1	protein_coding	chr7:139220898-139226204
chr7	139248458	139248499	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	139248481	139248483	+	ENSMUST00000093993.4,ENSMUSG00000060260.13	Pwwp2b	ENSMUSG00000060260.13	ENSMUST00000093993.4	protein_coding	chr7:139248482-139267975
chr7	139248458	139248499	+	(CGG)n	Simple_repeat	Simple_repeat	chr7	139248486	139248488	+	ENSMUST00000172136.8,ENSMUSG00000060260.13	Pwwp2b	ENSMUSG00000060260.13	ENSMUST00000172136.8	protein_coding	chr7:139248487-139267161
chr7	139774423	139774744	-	ORR1A3	LTR	ERVL-MaLR	chr7	139774713	139774715	+	ENSMUST00000211599.1,ENSMUSG00000109905.1	Gm7380	ENSMUSG00000109905.1	ENSMUST00000211599.1	processed_pseudogene	chr7:139774714-139775179
chr7	139962608	139962873	+	B4A	SINE	B4	chr7	139962683	139962685	+	ENSMUST00000210415.1,ENSMUSG00000086742.8	Gm16201	ENSMUSG00000086742.8	ENSMUST00000210415.1	processed_transcript	chr7:139962684-139968197
chr7	140101896	140101976	+	(GA)n	Simple_repeat	Simple_repeat	chr7	140101965	140101967	-	ENSMUST00000125421.7,ENSMUSG00000025466.19	Fuom	ENSMUSG00000025466.19	ENSMUST00000125421.7	protein_coding	chr7:140101155-140101966
chr7	140125545	140125674	+	C-rich	Low_complexity	Low_complexity	chr7	140125656	140125658	+	ENSMUST00000026537.12,ENSMUSG00000025464.15	Paox	ENSMUSG00000025464.15	ENSMUST00000026537.12	protein_coding	chr7:140125657-140137224
chr7	140148864	140148979	-	PB1D9	SINE	Alu	chr7	140148958	140148960	+	ENSMUST00000155723.1,ENSMUSG00000039018.15	Mtg1	ENSMUSG00000039018.15	ENSMUST00000155723.1	protein_coding	chr7:140148959-140150447
chr7	140856851	140856963	-	B1_Mur3	SINE	Alu	chr7	140856956	140856958	+	ENSMUST00000026558.6,ENSMUSG00000025485.13	Ric8a	ENSMUSG00000025485.13	ENSMUST00000026558.6	protein_coding	chr7:140856957-140863730
chr7	140856908	140856972	-	B4A	SINE	B4	chr7	140856956	140856958	+	ENSMUST00000026558.6,ENSMUSG00000025485.13	Ric8a	ENSMUSG00000025485.13	ENSMUST00000026558.6	protein_coding	chr7:140856957-140863730
chr7	140860618	140860703	-	ID_B1	SINE	B4	chr7	140860641	140860643	+	ENSMUST00000131850.1,ENSMUSG00000025485.13	Ric8a	ENSMUSG00000025485.13	ENSMUST00000131850.1	protein_coding	chr7:140860642-140863143
chr7	140905955	140906320	+	MLT2D	LTR	ERVL	chr7	140906013	140906015	+	ENSMUST00000210080.1,ENSMUSG00000109628.1	BC024386	ENSMUSG00000109628.1	ENSMUST00000210080.1	processed_transcript	chr7:140906014-140907983
chr7	140905955	140906320	+	MLT2D	LTR	ERVL	chr7	140906020	140906022	+	ENSMUST00000209817.1,ENSMUSG00000109628.1	BC024386	ENSMUSG00000109628.1	ENSMUST00000209817.1	processed_transcript	chr7:140906021-140907961
chr7	140905955	140906320	+	MLT2D	LTR	ERVL	chr7	140906041	140906043	+	ENSMUST00000209842.1,ENSMUSG00000109628.1	BC024386	ENSMUSG00000109628.1	ENSMUST00000209842.1	processed_transcript	chr7:140906042-140907979
chr7	140905955	140906320	+	MLT2D	LTR	ERVL	chr7	140906047	140906049	+	ENSMUST00000210567.1,ENSMUSG00000109628.1	BC024386	ENSMUSG00000109628.1	ENSMUST00000210567.1	processed_transcript	chr7:140906048-140907979
chr7	140905955	140906320	+	MLT2D	LTR	ERVL	chr7	140906063	140906065	+	ENSMUST00000209406.1,ENSMUSG00000109628.1	BC024386	ENSMUSG00000109628.1	ENSMUST00000209406.1	processed_transcript	chr7:140906064-140907979
chr7	140905955	140906320	+	MLT2D	LTR	ERVL	chr7	140906082	140906084	+	ENSMUST00000209496.1,ENSMUSG00000109628.1	BC024386	ENSMUSG00000109628.1	ENSMUST00000209496.1	processed_transcript	chr7:140906083-140907979
chr7	140967127	140967588	+	MT2A	LTR	ERVL	chr7	140967220	140967222	+	ENSMUST00000106042.8,ENSMUSG00000025491.14	Ifitm1	ENSMUSG00000025491.14	ENSMUST00000106042.8	protein_coding	chr7:140967221-140969825
chr7	141029128	141029316	-	B2_Mm1a	SINE	B2	chr7	141029130	141029132	+	ENSMUST00000170892.1,ENSMUSG00000091441.1	Gm17387	ENSMUSG00000091441.1	ENSMUST00000170892.1	protein_coding	chr7:141029131-141029620
chr7	141105956	141106037	-	U6	snRNA	snRNA	chr7	141106036	141106038	-	ENSMUST00000157917.1,ENSMUSG00000088542.1	Gm24962	ENSMUSG00000088542.1	ENSMUST00000157917.1	snRNA	chr7:141105929-141106037
chr7	141130205	141130277	-	ID_B1	SINE	B4	chr7	141130255	141130257	+	ENSMUST00000172787.7,ENSMUSG00000025495.15	Ptdss2	ENSMUSG00000025495.15	ENSMUST00000172787.7	protein_coding	chr7:141130256-141152991
chr7	141169102	141169276	-	B3	SINE	B2	chr7	141169225	141169227	-	ENSMUST00000106033.4,ENSMUSG00000038650.15	Rnh1	ENSMUSG00000038650.15	ENSMUST00000106033.4	protein_coding	chr7:141160328-141169226
chr7	141181310	141181485	-	ID_B1	SINE	B4	chr7	141181310	141181312	-	ENSMUST00000104359.1,ENSMUSG00000077547.1	Gm22019	ENSMUSG00000077547.1	ENSMUST00000104359.1	snRNA	chr7:141181216-141181311
chr7	141193862	141193911	+	G-rich	Low_complexity	Low_complexity	chr7	141193881	141193883	-	ENSMUST00000124971.1,ENSMUSG00000025499.18	Hras	ENSMUSG00000025499.18	ENSMUST00000124971.1	protein_coding	chr7:141190930-141193882
chr7	141193994	141194033	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	141194003	141194005	-	ENSMUST00000168550.7,ENSMUSG00000025499.18	Hras	ENSMUSG00000025499.18	ENSMUST00000168550.7	protein_coding	chr7:141189934-141194004
chr7	141193994	141194033	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	141193993	141193995	-	ENSMUST00000128993.1,ENSMUSG00000025499.18	Hras	ENSMUSG00000025499.18	ENSMUST00000128993.1	protein_coding	chr7:141190926-141193994
chr7	141193994	141194033	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr7	141194004	141194006	-	ENSMUST00000097957.10,ENSMUSG00000025499.18	Hras	ENSMUSG00000025499.18	ENSMUST00000097957.10	protein_coding	chr7:141190926-141194005
chr7	141243299	141243665	-	MTD	LTR	ERVL-MaLR	chr7	141243498	141243500	+	ENSMUST00000122143.7,ENSMUSG00000038611.17	Phrf1	ENSMUSG00000038611.17	ENSMUST00000122143.7	protein_coding	chr7:141243499-141262595
chr7	141327470	141327526	+	(CCG)n	Simple_repeat	Simple_repeat	chr7	141327492	141327494	-	ENSMUST00000210062.1,ENSMUSG00000058886.9	Deaf1	ENSMUSG00000058886.9	ENSMUST00000210062.1	protein_coding	chr7:141297185-141327493
chr7	141399322	141399475	-	ID_B1	SINE	B4	chr7	141399427	141399429	+	ENSMUST00000211759.1,ENSMUSG00000025503.5	Taldo1	ENSMUSG00000025503.5	ENSMUST00000211759.1	protein_coding	chr7:141399428-141402968
chr7	141400078	141400172	-	PB1D10	SINE	Alu	chr7	141400153	141400155	+	ENSMUST00000125597.1,ENSMUSG00000025503.5	Taldo1	ENSMUSG00000025503.5	ENSMUST00000125597.1	protein_coding	chr7:141400154-141402206
chr7	141400096	141400183	-	MT2B2	LTR	ERVL	chr7	141400153	141400155	+	ENSMUST00000125597.1,ENSMUSG00000025503.5	Taldo1	ENSMUSG00000025503.5	ENSMUST00000125597.1	protein_coding	chr7:141400154-141402206
chr7	141463063	141463230	-	B1_Mur2	SINE	Alu	chr7	141463110	141463112	+	ENSMUST00000172215.7,ENSMUSG00000048200.12	Cracr2b	ENSMUSG00000048200.12	ENSMUST00000172215.7	protein_coding	chr7:141463111-141464729
chr7	141613745	141613824	-	MER5A	DNA	hAT-Charlie	chr7	141613746	141613748	-	ENSMUST00000181275.1,ENSMUSG00000097170.1	Gm16982	ENSMUSG00000097170.1	ENSMUST00000181275.1	antisense	chr7:141610066-141613747
chr7	141949679	141949782	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr7	141949750	141949752	+	ENSMUST00000078200.11,ENSMUSG00000053046.16	Brsk2	ENSMUSG00000053046.16	ENSMUST00000078200.11	protein_coding	chr7:141949751-141999005
chr7	141949679	141949782	+	(CTCGG)n	Simple_repeat	Simple_repeat	chr7	141949750	141949752	+	ENSMUST00000018971.14,ENSMUSG00000053046.16	Brsk2	ENSMUSG00000053046.16	ENSMUST00000018971.14	protein_coding	chr7:141949751-142004246
chr7	142052899	142053128	+	Charlie1a	DNA	hAT-Charlie	chr7	142053074	142053076	-	ENSMUST00000210243.1,ENSMUSG00000109638.1	Gm45630	ENSMUSG00000109638.1	ENSMUST00000210243.1	TEC	chr7:142051165-142053075
chr7	142078331	142078437	-	U6	snRNA	snRNA	chr7	142078436	142078438	-	ENSMUST00000104221.1,ENSMUSG00000077409.1	Gm25416	ENSMUSG00000077409.1	ENSMUST00000104221.1	snRNA	chr7:142078331-142078437
chr7	142282826	142283325	+	ERVB4_1C-LTR_Mm	LTR	ERVK	chr7	142283209	142283211	+	ENSMUST00000209535.1,ENSMUSG00000109936.1	Gm45889	ENSMUSG00000109936.1	ENSMUST00000209535.1	lincRNA	chr7:142283210-142284266
chr7	142283325	142286984	+	ERVB4_1-I_MM-int	LTR	ERVK	chr7	142283459	142283461	+	ENSMUST00000211255.1,ENSMUSG00000109936.1	Gm45889	ENSMUSG00000109936.1	ENSMUST00000211255.1	lincRNA	chr7:142283460-142290418
chr7	142337816	142338143	-	ORR1A2	LTR	ERVL-MaLR	chr7	142338021	142338023	-	ENSMUST00000131791.1,ENSMUSG00000045777.14	Ifitm10	ENSMUSG00000045777.14	ENSMUST00000131791.1	protein_coding	chr7:142325837-142338022
chr7	142424795	142424901	+	U6	snRNA	snRNA	chr7	142424794	142424796	+	ENSMUST00000104480.1,ENSMUSG00000077668.1	Gm26143	ENSMUSG00000077668.1	ENSMUST00000104480.1	snRNA	chr7:142424795-142424902
chr7	142472068	142472198	+	GA-rich	Low_complexity	Low_complexity	chr7	142472150	142472152	+	ENSMUST00000105966.1,ENSMUSG00000018819.10	Lsp1	ENSMUSG00000018819.10	ENSMUST00000105966.1	protein_coding	chr7:142472151-142494600
chr7	142578108	142578143	+	(CCCCCA)n	Simple_repeat	Simple_repeat	chr7	142578142	142578144	-	ENSMUST00000136359.7,ENSMUSG00000000031.16	H19	ENSMUSG00000000031.16	ENSMUST00000136359.7	lincRNA	chr7:142575529-142578143
chr7	142815133	142815277	-	MYSERV16_I-int	LTR	ERVK	chr7	142815251	142815253	+	ENSMUST00000148734.2,ENSMUSG00000073781.4	Gm6471	ENSMUSG00000073781.4	ENSMUST00000148734.2	lincRNA	chr7:142815252-142851465
chr7	142830930	142831418	+	RMER12C	LTR	ERVK	chr7	142831226	142831228	+	ENSMUST00000097935.2,ENSMUSG00000073781.4	Gm6471	ENSMUSG00000073781.4	ENSMUST00000097935.2	lincRNA	chr7:142831227-142852266
chr7	142857098	142857637	+	RMER19B2	LTR	ERVK	chr7	142857581	142857583	-	ENSMUST00000207692.1,ENSMUSG00000108952.1	Gm39117	ENSMUSG00000108952.1	ENSMUST00000207692.1	lincRNA	chr7:142837271-142857582
chr7	142930614	142931342	-	RMER19A	LTR	ERVK	chr7	142931127	142931129	-	ENSMUST00000105929.10,ENSMUSG00000000214.11	Th	ENSMUSG00000000214.11	ENSMUST00000105929.10	protein_coding	chr7:142892798-142931128
chr7	142930614	142931342	-	RMER19A	LTR	ERVK	chr7	142931119	142931121	-	ENSMUST00000140344.1,ENSMUSG00000000214.11	Th	ENSMUSG00000000214.11	ENSMUST00000140344.1	protein_coding	chr7:142896598-142931120
chr7	143005009	143005100	+	GA-rich	Low_complexity	Low_complexity	chr7	143005045	143005047	+	ENSMUST00000009396.12,ENSMUSG00000000244.17	Tspan32	ENSMUSG00000000244.17	ENSMUST00000009396.12	protein_coding	chr7:143005046-143019486
chr7	143005009	143005100	+	GA-rich	Low_complexity	Low_complexity	chr7	143005059	143005061	+	ENSMUST00000141186.1,ENSMUSG00000000244.17	Tspan32	ENSMUSG00000000244.17	ENSMUST00000141186.1	protein_coding	chr7:143005060-143007488
chr7	143005592	143005666	+	GA-rich	Low_complexity	Low_complexity	chr7	143005637	143005639	+	ENSMUST00000075172.11,ENSMUSG00000000244.17	Tspan32	ENSMUSG00000000244.17	ENSMUST00000075172.11	protein_coding	chr7:143005638-143019644
chr7	143005592	143005666	+	GA-rich	Low_complexity	Low_complexity	chr7	143005662	143005664	+	ENSMUST00000145212.7,ENSMUSG00000000244.17	Tspan32	ENSMUSG00000000244.17	ENSMUST00000145212.7	protein_coding	chr7:143005663-143019483
chr7	143074827	143075175	+	MTD	LTR	ERVL-MaLR	chr7	143074852	143074854	-	ENSMUST00000126776.7,ENSMUSG00000009246.14	Trpm5	ENSMUSG00000009246.14	ENSMUST00000126776.7	protein_coding	chr7:143071217-143074853
chr7	143081874	143081954	+	AmnSINE1	SINE	Deu	chr7	143081921	143081923	-	ENSMUST00000133027.1,ENSMUSG00000009246.14	Trpm5	ENSMUSG00000009246.14	ENSMUST00000133027.1	protein_coding	chr7:143080716-143081922
chr7	143106133	143106402	-	MTD	LTR	ERVL-MaLR	chr7	143106361	143106363	+	ENSMUST00000186488.6,ENSMUSG00000009545.14	Kcnq1	ENSMUSG00000009545.14	ENSMUST00000186488.6	protein_coding	chr7:143106362-143149537
chr7	143297697	143297743	+	T-rich	Low_complexity	Low_complexity	chr7	143297697	143297699	+	ENSMUST00000192533.1,ENSMUSG00000104012.1	Gm37364	ENSMUSG00000104012.1	ENSMUST00000192533.1	TEC	chr7:143297698-143301617
chr7	143344428	143344468	+	T-rich	Low_complexity	Low_complexity	chr7	143344436	143344438	+	ENSMUST00000192896.1,ENSMUSG00000103791.1	Gm38095	ENSMUSG00000103791.1	ENSMUST00000192896.1	TEC	chr7:143344437-143345838
chr7	143353510	143353956	-	L1MEg	LINE	L1	chr7	143353911	143353913	-	ENSMUST00000193147.1,ENSMUSG00000104485.1	Gm38065	ENSMUSG00000104485.1	ENSMUST00000193147.1	TEC	chr7:143350421-143353912
chr7	143447598	143447683	-	Plat_L3	LINE	CR1	chr7	143447604	143447606	+	ENSMUST00000184559.1,ENSMUSG00000099103.1	Gm27901	ENSMUSG00000099103.1	ENSMUST00000184559.1	misc_RNA	chr7:143447605-143447665
chr7	143459657	143459754	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr7	143459748	143459750	+	ENSMUST00000208055.1,ENSMUSG00000108934.1	Gm44732	ENSMUSG00000108934.1	ENSMUST00000208055.1	antisense	chr7:143459749-143460640
chr7	143460137	143460284	+	(TTCGGG)n	Simple_repeat	Simple_repeat	chr7	143460172	143460174	-	ENSMUST00000207910.1,ENSMUSG00000037664.13	Cdkn1c	ENSMUSG00000037664.13	ENSMUST00000207910.1	protein_coding	chr7:143458822-143460173
chr7	143460137	143460284	+	(TTCGGG)n	Simple_repeat	Simple_repeat	chr7	143460161	143460163	-	ENSMUST00000208137.1,ENSMUSG00000037664.13	Cdkn1c	ENSMUSG00000037664.13	ENSMUST00000208137.1	protein_coding	chr7:143458898-143460162
chr7	143628217	143628506	+	L1MB3	LINE	L1	chr7	143628280	143628282	+	ENSMUST00000207189.1,ENSMUSG00000109251.1	E230032D23Rik	ENSMUSG00000109251.1	ENSMUST00000207189.1	antisense	chr7:143628281-143670614
chr7	143628520	143628728	+	ID_B1	SINE	B4	chr7	143628721	143628723	-	ENSMUST00000208124.1,ENSMUSG00000045362.8	Tnfrsf26	ENSMUSG00000045362.8	ENSMUST00000208124.1	protein_coding	chr7:143607659-143628722
chr7	143740291	143740320	+	GC_rich	Low_complexity	Low_complexity	chr7	143740298	143740300	-	ENSMUST00000153864.1,ENSMUSG00000037606.18	Osbpl5	ENSMUSG00000037606.18	ENSMUST00000153864.1	protein_coding	chr7:143713496-143740299
chr7	143780085	143780153	+	(TATG)n	Simple_repeat	Simple_repeat	chr7	143780089	143780091	+	ENSMUST00000103756.1,ENSMUSG00000076944.1	Gm22064	ENSMUSG00000076944.1	ENSMUST00000103756.1	miRNA	chr7:143780090-143780155
chr7	143828885	143828920	-	L1MEg	LINE	L1	chr7	143828896	143828898	+	ENSMUST00000208535.1,ENSMUSG00000058454.15	Dhcr7	ENSMUSG00000058454.15	ENSMUST00000208535.1	protein_coding	chr7:143828897-143831127
chr7	143872555	143872687	+	MIRc	SINE	MIR	chr7	143872609	143872611	+	ENSMUST00000207388.1,ENSMUSG00000031085.16	Gm498	ENSMUSG00000031085.16	ENSMUST00000207388.1	protein_coding	chr7:143872610-143891871
chr7	144009072	144009475	+	MTD	LTR	ERVL-MaLR	chr7	144009253	144009255	+	ENSMUST00000175480.1,ENSMUSG00000093221.1	Mir3105	ENSMUSG00000093221.1	ENSMUST00000175480.1	miRNA	chr7:144009254-144009338
chr7	144111082	144111140	+	(TG)n	Simple_repeat	Simple_repeat	chr7	144111084	144111086	-	ENSMUST00000207456.1,ENSMUSG00000109500.1	Gm44999	ENSMUSG00000109500.1	ENSMUST00000207456.1	TEC	chr7:144109593-144111085
chr7	144438322	144438618	+	MTC	LTR	ERVL-MaLR	chr7	144438327	144438329	-	ENSMUST00000134131.1,ENSMUSG00000031078.15	Cttn	ENSMUSG00000031078.15	ENSMUST00000134131.1	protein_coding	chr7:144436884-144438328
chr7	144608206	144608346	-	B1_Mur1	SINE	Alu	chr7	144608294	144608296	-	ENSMUST00000131571.1,ENSMUSG00000031075.18	Ano1	ENSMUSG00000031075.18	ENSMUST00000131571.1	protein_coding	chr7:144595442-144608295
chr7	144838423	144838601	+	C-rich	Low_complexity	Low_complexity	chr7	144838594	144838596	+	ENSMUST00000105898.1,ENSMUSG00000031074.14	Fgf3	ENSMUSG00000031074.14	ENSMUST00000105898.1	protein_coding	chr7:144838595-144844436
chr7	144914469	144914623	+	BC1_Mm	scRNA	scRNA	chr7	144914469	144914471	+	ENSMUST00000227063.1,ENSMUSG00000115783.1	Bc1	ENSMUSG00000115783.1	ENSMUST00000227063.1	lincRNA	chr7:144914470-144914637
chr7	144916072	144916250	+	ID_B1	SINE	B4	chr7	144916135	144916137	+	ENSMUST00000147460.1,ENSMUSG00000031072.14	LTO1	ENSMUSG00000031072.14	ENSMUST00000147460.1	protein_coding	chr7:144916136-144919829
chr7	144939925	144940003	+	G-rich	Low_complexity	Low_complexity	chr7	144939924	144939926	-	ENSMUST00000208193.1,ENSMUSG00000070348.5	Ccnd1	ENSMUSG00000070348.5	ENSMUST00000208193.1	protein_coding	chr7:144933198-144939925
chr8	3099272	3099760	-	MT2_Mm	LTR	ERVL	chr8	3099505	3099507	-	ENSMUST00000116716.1,ENSMUSG00000080366.1	Gm25775	ENSMUSG00000080366.1	ENSMUST00000116716.1	miRNA	chr8:3099386-3099506
chr8	3181828	3181854	+	(A)n	Simple_repeat	Simple_repeat	chr8	3181850	3181852	-	ENSMUST00000207295.1,ENSMUSG00000005534.10	Insr	ENSMUSG00000005534.10	ENSMUST00000207295.1	protein_coding	chr8:3177833-3181851
chr8	3494958	3495157	+	ID_B1	SINE	B4	chr8	3495008	3495010	+	ENSMUST00000208423.1,ENSMUSG00000047264.8	Zfp358	ENSMUSG00000047264.8	ENSMUST00000208423.1	protein_coding	chr8:3495009-3497208
chr8	3580393	3580504	+	B3	SINE	B2	chr8	3580468	3580470	+	ENSMUST00000086479.6,ENSMUSG00000065952.13	C330021F23Rik	ENSMUSG00000065952.13	ENSMUST00000086479.6	protein_coding	chr8:3580469-3584939
chr8	3587180	3587312	-	B1_Mur1	SINE	Alu	chr8	3587292	3587294	+	ENSMUST00000057028.14,ENSMUSG00000044433.16	Camsap3	ENSMUSG00000044433.16	ENSMUST00000057028.14	protein_coding	chr8:3587293-3609075
chr8	3632799	3633004	+	ID_B1	SINE	B4	chr8	3632914	3632916	+	ENSMUST00000161982.1,ENSMUSG00000004626.14	Stxbp2	ENSMUSG00000004626.14	ENSMUST00000161982.1	protein_coding	chr8:3632915-3634066
chr8	3640531	3640727	-	B2_Mm1a	SINE	B2	chr8	3640706	3640708	+	ENSMUST00000159652.7,ENSMUSG00000004626.14	Stxbp2	ENSMUSG00000004626.14	ENSMUST00000159652.7	protein_coding	chr8:3640707-3641937
chr8	3640727	3640979	-	HAL1b	LINE	L1	chr8	3640763	3640765	+	ENSMUST00000162047.7,ENSMUSG00000004626.14	Stxbp2	ENSMUSG00000004626.14	ENSMUST00000162047.7	protein_coding	chr8:3640764-3642022
chr8	3640727	3640979	-	HAL1b	LINE	L1	chr8	3640836	3640838	+	ENSMUST00000161629.7,ENSMUSG00000004626.14	Stxbp2	ENSMUSG00000004626.14	ENSMUST00000161629.7	protein_coding	chr8:3640837-3642788
chr8	3660976	3661059	-	RMER1B	Other	Other	chr8	3660978	3660980	-	ENSMUST00000207212.1,ENSMUSG00000108859.1	Gm44776	ENSMUSG00000108859.1	ENSMUST00000207212.1	processed_pseudogene	chr8:3660599-3660979
chr8	3691142	3691213	-	L3	LINE	CR1	chr8	3691160	3691162	-	ENSMUST00000207635.1,ENSMUSG00000005540.10	Fcer2a	ENSMUSG00000005540.10	ENSMUST00000207635.1	protein_coding	chr8:3682824-3691161
chr8	3691142	3691213	-	L3	LINE	CR1	chr8	3691162	3691164	-	ENSMUST00000207463.1,ENSMUSG00000005540.10	Fcer2a	ENSMUSG00000005540.10	ENSMUST00000207463.1	protein_coding	chr8:3682824-3691163
chr8	3709598	3709956	+	MTD	LTR	ERVL-MaLR	chr8	3709803	3709805	+	ENSMUST00000160490.1,ENSMUSG00000089956.1	Gm16553	ENSMUSG00000089956.1	ENSMUST00000160490.1	antisense	chr8:3709804-3739044
chr8	3780817	3781335	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr8	3781019	3781021	+	ENSMUST00000103764.1,ENSMUSG00000076952.1	Gm24934	ENSMUSG00000076952.1	ENSMUST00000103764.1	miRNA	chr8:3781020-3781130
chr8	3803356	3803440	+	IAPEy-int	LTR	ERVK	chr8	3803357	3803359	-	ENSMUST00000157400.1,ENSMUSG00000088025.1	Rprl3	ENSMUSG00000088025.1	ENSMUST00000157400.1	ribozyme	chr8:3803069-3803358
chr8	3945966	3946329	-	RLTR10C	LTR	ERVK	chr8	3946052	3946054	-	ENSMUST00000208902.1,ENSMUSG00000040165.14	Cd209c	ENSMUSG00000040165.14	ENSMUST00000208902.1	protein_coding	chr8:3940237-3946053
chr8	3945966	3946329	-	RLTR10C	LTR	ERVK	chr8	3946052	3946054	-	ENSMUST00000208622.1,ENSMUSG00000040165.14	Cd209c	ENSMUSG00000040165.14	ENSMUST00000208622.1	protein_coding	chr8:3940237-3946053
chr8	3946329	3951359	-	MMERVK10C-int	LTR	ERVK	chr8	3946862	3946864	-	ENSMUST00000044060.13,ENSMUSG00000040165.14	Cd209c	ENSMUSG00000040165.14	ENSMUST00000044060.13	protein_coding	chr8:3940222-3946863
chr8	3946329	3951359	-	MMERVK10C-int	LTR	ERVK	chr8	3946883	3946885	-	ENSMUST00000153915.1,ENSMUSG00000040165.14	Cd209c	ENSMUSG00000040165.14	ENSMUST00000153915.1	protein_coding	chr8:3945712-3946884
chr8	4274853	4274942	+	7SK	RNA	RNA	chr8	4274852	4274854	+	ENSMUST00000157251.1,ENSMUSG00000087876.1	Gm26102	ENSMUSG00000087876.1	ENSMUST00000157251.1	misc_RNA	chr8:4274853-4275136
chr8	4362648	4362739	-	RMER1B	Other	Other	chr8	4362653	4362655	-	ENSMUST00000208836.1,ENSMUSG00000108818.1	Gm44869	ENSMUSG00000108818.1	ENSMUST00000208836.1	processed_pseudogene	chr8:4362298-4362654
chr8	4399118	4399251	+	B1F1	SINE	Alu	chr8	4399237	4399239	+	ENSMUST00000207250.1,ENSMUSG00000109397.1	Gm45117	ENSMUSG00000109397.1	ENSMUST00000207250.1	TEC	chr8:4399238-4401011
chr8	4625629	4626352	+	MurSatRep1	Unknown	Unknown	chr8	4625839	4625841	+	ENSMUST00000073201.5,ENSMUSG00000058748.9	Zfp958	ENSMUSG00000058748.9	ENSMUST00000073201.5	protein_coding	chr8:4625840-4629380
chr8	4746362	4746508	-	B1_Mm	SINE	Alu	chr8	4746423	4746425	-	ENSMUST00000207665.1,ENSMUSG00000022322.8	Shcbp1	ENSMUSG00000022322.8	ENSMUST00000207665.1	protein_coding	chr8:4738845-4746424
chr8	5069257	5069377	-	5S	rRNA	rRNA	chr8	5069376	5069378	-	ENSMUST00000180091.1,ENSMUSG00000096219.1	n-R5s93	ENSMUSG00000096219.1	ENSMUST00000180091.1	rRNA	chr8:5069259-5069377
chr8	5332998	5333113	-	5S	rRNA	rRNA	chr8	5333112	5333114	-	ENSMUST00000082573.1,ENSMUSG00000064507.1	n-R5s94	ENSMUSG00000064507.1	ENSMUST00000082573.1	rRNA	chr8:5332995-5333113
chr8	5440846	5441339	-	MT2_Mm	LTR	ERVL	chr8	5440989	5440991	-	ENSMUST00000208141.1,ENSMUSG00000109313.1	Gm44693	ENSMUSG00000109313.1	ENSMUST00000208141.1	lincRNA	chr8:5436984-5440990
chr8	5705305	5705693	+	Lx5b	LINE	L1	chr8	5705426	5705428	+	ENSMUST00000175540.1,ENSMUSG00000093281.1	Gm22565	ENSMUSG00000093281.1	ENSMUST00000175540.1	miRNA	chr8:5705427-5705495
chr8	6034466	6035050	+	L1_Mur3	LINE	L1	chr8	6034866	6034868	+	ENSMUST00000208320.1,ENSMUSG00000109518.1	Gm44843	ENSMUSG00000109518.1	ENSMUST00000208320.1	TEC	chr8:6034867-6036262
chr8	7428221	7428328	-	U6	snRNA	snRNA	chr8	7428327	7428329	-	ENSMUST00000093648.1,ENSMUSG00000093992.1	Gm26427	ENSMUSG00000093992.1	ENSMUST00000093648.1	snRNA	chr8:7428222-7428328
chr8	7855754	7855875	-	L2b	LINE	L2	chr8	7855846	7855848	+	ENSMUST00000185463.1,ENSMUSG00000099890.2	Gm28262	ENSMUSG00000099890.2	ENSMUST00000185463.1	processed_transcript	chr8:7855847-7857912
chr8	7985256	7985388	-	L1M5	LINE	L1	chr8	7985367	7985369	+	ENSMUST00000207112.1,ENSMUSG00000109316.1	Gm45160	ENSMUSG00000109316.1	ENSMUST00000207112.1	TEC	chr8:7985368-7988466
chr8	8720525	8721697	-	ORR1A3-int	LTR	ERVL-MaLR	chr8	8721307	8721309	-	ENSMUST00000207643.1,ENSMUSG00000109190.1	Gm44621	ENSMUSG00000109190.1	ENSMUST00000207643.1	lincRNA	chr8:8716924-8721308
chr8	8726909	8727454	+	RLTR11C_MM	LTR	ERVK	chr8	8727110	8727112	+	ENSMUST00000207035.1,ENSMUSG00000109371.1	Gm44626	ENSMUSG00000109371.1	ENSMUST00000207035.1	lincRNA	chr8:8727111-8853647
chr8	9323678	9323759	+	(TG)n	Simple_repeat	Simple_repeat	chr8	9323710	9323712	-	ENSMUST00000207297.1,ENSMUSG00000079157.4	Fam155a	ENSMUSG00000079157.4	ENSMUST00000207297.1	protein_coding	chr8:9207238-9323711
chr8	9323678	9323759	+	(TG)n	Simple_repeat	Simple_repeat	chr8	9323710	9323712	-	ENSMUST00000208171.1,ENSMUSG00000079157.4	Fam155a	ENSMUSG00000079157.4	ENSMUST00000208171.1	protein_coding	chr8:9321523-9323711
chr8	9345099	9345244	+	B1_Mus1	SINE	Alu	chr8	9345125	9345127	-	ENSMUST00000207837.1,ENSMUSG00000109286.1	Gm44541	ENSMUSG00000109286.1	ENSMUST00000207837.1	TEC	chr8:9342220-9345126
chr8	9568137	9568249	-	5S	rRNA	rRNA	chr8	9568248	9568250	-	ENSMUST00000082684.1,ENSMUSG00000064618.1	n-R5s95	ENSMUSG00000064618.1	ENSMUST00000082684.1	rRNA	chr8:9568132-9568249
chr8	9596661	9597071	-	MTEa	LTR	ERVL-MaLR	chr8	9596944	9596946	-	ENSMUST00000208780.1,ENSMUSG00000109359.1	Gm44797	ENSMUSG00000109359.1	ENSMUST00000208780.1	TEC	chr8:9595109-9596945
chr8	9605832	9606024	-	L1_Mus1	LINE	L1	chr8	9605881	9605883	-	ENSMUST00000207644.1,ENSMUSG00000109529.1	Gm44801	ENSMUSG00000109529.1	ENSMUST00000207644.1	TEC	chr8:9603823-9605882
chr8	9620519	9620633	+	(GAAA)n	Simple_repeat	Simple_repeat	chr8	9620561	9620563	-	ENSMUST00000208123.1,ENSMUSG00000109139.1	Gm44798	ENSMUSG00000109139.1	ENSMUST00000208123.1	TEC	chr8:9618153-9620562
chr8	9710833	9711204	+	L1_Mus2	LINE	L1	chr8	9711085	9711087	-	ENSMUST00000208026.1,ENSMUSG00000108918.1	Gm44802	ENSMUSG00000108918.1	ENSMUST00000208026.1	TEC	chr8:9709171-9711086
chr8	9771132	9771173	+	(TC)n	Simple_repeat	Simple_repeat	chr8	9771160	9771162	-	ENSMUST00000110969.4,ENSMUSG00000079157.4	Fam155a	ENSMUSG00000079157.4	ENSMUST00000110969.4	protein_coding	chr8:9205902-9771161
chr8	9864219	9864277	+	(TC)n	Simple_repeat	Simple_repeat	chr8	9864250	9864252	+	ENSMUST00000088080.2,ENSMUSG00000067627.2	Gm10217	ENSMUSG00000067627.2	ENSMUST00000088080.2	protein_coding	chr8:9864251-9870315
chr8	9876823	9877991	-	RMER12B	LTR	ERVK	chr8	9876896	9876898	-	ENSMUST00000179462.1,ENSMUSG00000095279.2	Gm10067	ENSMUSG00000095279.2	ENSMUST00000179462.1	lincRNA	chr8:9876548-9876897
chr8	10900541	10900587	+	A-rich	Low_complexity	Low_complexity	chr8	10900557	10900559	-	ENSMUST00000207074.1,ENSMUSG00000109291.1	Gm2814	ENSMUSG00000109291.1	ENSMUST00000207074.1	lincRNA	chr8:10898169-10900558
chr8	11049512	11049635	+	PB1D9	SINE	Alu	chr8	11049577	11049579	+	ENSMUST00000181315.1,ENSMUSG00000096938.7	9530052E02Rik	ENSMUSG00000096938.7	ENSMUST00000181315.1	processed_transcript	chr8:11049578-11054541
chr8	11116303	11116645	+	ORR1E	LTR	ERVL-MaLR	chr8	11116554	11116556	+	ENSMUST00000208665.1,ENSMUSG00000109151.1	Gm44714	ENSMUSG00000109151.1	ENSMUST00000208665.1	lincRNA	chr8:11116555-11117373
chr8	11232358	11232757	+	MTB	LTR	ERVL-MaLR	chr8	11232438	11232440	-	ENSMUST00000208386.1,ENSMUSG00000031502.11	Col4a1	ENSMUSG00000031502.11	ENSMUST00000208386.1	protein_coding	chr8:11226953-11232439
chr8	11459576	11459800	+	URR1B	DNA	hAT-Charlie	chr8	11459741	11459743	-	ENSMUST00000209418.1,ENSMUSG00000110245.1	Gm20100	ENSMUSG00000110245.1	ENSMUST00000209418.1	TEC	chr8:11457471-11459742
chr8	11477910	11478065	+	MIRc	SINE	MIR	chr8	11477928	11477930	+	ENSMUST00000180408.1,ENSMUSG00000096957.1	E230013L22Rik	ENSMUSG00000096957.1	ENSMUST00000180408.1	bidirectional_promoter_lncRNA	chr8:11477929-11480241
chr8	11633915	11634053	+	B1_Mm	SINE	Alu	chr8	11633949	11633951	-	ENSMUST00000210876.1,ENSMUSG00000031508.14	Ankrd10	ENSMUSG00000031508.14	ENSMUST00000210876.1	protein_coding	chr8:11628515-11633950
chr8	11637180	11637328	-	B1_Mm	SINE	Alu	chr8	11637281	11637283	+	ENSMUST00000209605.1,ENSMUSG00000109810.1	Gm45592	ENSMUSG00000109810.1	ENSMUST00000209605.1	TEC	chr8:11637282-11638324
chr8	11674433	11674634	+	MTE2b	LTR	ERVL-MaLR	chr8	11674573	11674575	+	ENSMUST00000210502.1,ENSMUSG00000109623.1	Gm7562	ENSMUSG00000109623.1	ENSMUST00000210502.1	TEC	chr8:11674574-11677110
chr8	11728128	11728194	+	GC_rich	Low_complexity	Low_complexity	chr8	11728176	11728178	+	ENSMUST00000033908.13,ENSMUSG00000031511.15	Arhgef7	ENSMUSG00000031511.15	ENSMUST00000033908.13	protein_coding	chr8:11728177-11823061
chr8	11812359	11812382	+	(T)n	Simple_repeat	Simple_repeat	chr8	11812361	11812363	+	ENSMUST00000154204.1,ENSMUSG00000031511.15	Arhgef7	ENSMUSG00000031511.15	ENSMUST00000154204.1	protein_coding	chr8:11812362-11816345
chr8	11874151	11874723	-	LTRIS2	LTR	ERV1	chr8	11874158	11874160	+	ENSMUST00000210446.1,ENSMUSG00000109772.1	Gm39132	ENSMUSG00000109772.1	ENSMUST00000210446.1	lincRNA	chr8:11874159-11894113
chr8	12356153	12356389	+	7SK	RNA	RNA	chr8	12356152	12356154	+	ENSMUST00000158609.1,ENSMUSG00000089234.1	Gm22207	ENSMUSG00000089234.1	ENSMUST00000158609.1	misc_RNA	chr8:12356153-12356469
chr8	12666002	12666356	+	ORR1C1	LTR	ERVL-MaLR	chr8	12666094	12666096	+	ENSMUST00000158016.1,ENSMUSG00000088641.1	Gm26483	ENSMUSG00000088641.1	ENSMUST00000158016.1	miRNA	chr8:12666095-12666198
chr8	12873711	12873900	+	C-rich	Low_complexity	Low_complexity	chr8	12873805	12873807	+	ENSMUST00000156560.1,ENSMUSG00000031442.20	Mcf2l	ENSMUSG00000031442.20	ENSMUST00000156560.1	protein_coding	chr8:12873806-12880146
chr8	12873711	12873900	+	C-rich	Low_complexity	Low_complexity	chr8	12873826	12873828	+	ENSMUST00000095456.9,ENSMUSG00000031442.20	Mcf2l	ENSMUSG00000031442.20	ENSMUST00000095456.9	protein_coding	chr8:12873827-13019053
chr8	12947913	12947950	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	12947918	12947920	+	ENSMUST00000130302.1,ENSMUSG00000031442.20	Mcf2l	ENSMUSG00000031442.20	ENSMUST00000130302.1	protein_coding	chr8:12947919-12988152
chr8	12947913	12947950	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	12947940	12947942	+	ENSMUST00000200573.1,ENSMUSG00000105030.1	Gm38671	ENSMUSG00000105030.1	ENSMUST00000200573.1	miRNA	chr8:12947941-12948070
chr8	12972029	12972892	-	Lx9	LINE	L1	chr8	12972028	12972030	-	ENSMUST00000121154.1,ENSMUSG00000082682.1	Gm15349	ENSMUSG00000082682.1	ENSMUST00000121154.1	processed_pseudogene	chr8:12971826-12972029
chr8	13105670	13105741	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	13105739	13105741	+	ENSMUST00000135371.1,ENSMUSG00000031446.14	Cul4a	ENSMUSG00000031446.14	ENSMUST00000135371.1	protein_coding	chr8:13105740-13117195
chr8	13105670	13105741	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	13105739	13105741	+	ENSMUST00000121426.1,ENSMUSG00000031446.14	Cul4a	ENSMUSG00000031446.14	ENSMUST00000121426.1	protein_coding	chr8:13105740-13124222
chr8	13173054	13173201	-	B1_Mus2	SINE	Alu	chr8	13173180	13173182	+	ENSMUST00000209709.1,ENSMUSG00000031447.7	Lamp1	ENSMUSG00000031447.7	ENSMUST00000209709.1	protein_coding	chr8:13173181-13173884
chr8	13200623	13200742	+	G-rich	Low_complexity	Low_complexity	chr8	13200719	13200721	+	ENSMUST00000190673.1,ENSMUSG00000099338.1	2810030D12Rik	ENSMUSG00000099338.1	ENSMUST00000190673.1	bidirectional_promoter_lncRNA	chr8:13200720-13207702
chr8	13200623	13200742	+	G-rich	Low_complexity	Low_complexity	chr8	13200727	13200729	+	ENSMUST00000185622.1,ENSMUSG00000099338.1	2810030D12Rik	ENSMUSG00000099338.1	ENSMUST00000185622.1	bidirectional_promoter_lncRNA	chr8:13200728-13207714
chr8	13281509	13281593	+	B1F1	SINE	Alu	chr8	13281591	13281593	-	ENSMUST00000204840.1,ENSMUSG00000038506.13	Dcun1d2	ENSMUSG00000038506.13	ENSMUST00000204840.1	protein_coding	chr8:13278529-13281592
chr8	13317410	13317736	+	IAPLTR3	LTR	ERVK	chr8	13317635	13317637	+	ENSMUST00000210750.1,ENSMUSG00000038497.7	Tmco3	ENSMUSG00000038497.7	ENSMUST00000210750.1	protein_coding	chr8:13317636-13321396
chr8	13339576	13339667	-	L1MEg	LINE	L1	chr8	13339660	13339662	+	ENSMUST00000210165.1,ENSMUSG00000038482.11	Tfdp1	ENSMUSG00000038482.11	ENSMUST00000210165.1	protein_coding	chr8:13339661-13370963
chr8	13390913	13391309	+	MTA_Mm	LTR	ERVL-MaLR	chr8	13391105	13391107	+	ENSMUST00000211331.1,ENSMUSG00000110311.1	Gm45410	ENSMUSG00000110311.1	ENSMUST00000211331.1	TEC	chr8:13391106-13392198
chr8	13435400	13435508	+	GA-rich	Low_complexity	Low_complexity	chr8	13435458	13435460	+	ENSMUST00000167505.2,ENSMUSG00000038457.17	Tmem255b	ENSMUSG00000038457.17	ENSMUST00000167505.2	protein_coding	chr8:13435459-13461447
chr8	13435400	13435508	+	GA-rich	Low_complexity	Low_complexity	chr8	13435482	13435484	+	ENSMUST00000167071.8,ENSMUSG00000038457.17	Tmem255b	ENSMUSG00000038457.17	ENSMUST00000167071.8	protein_coding	chr8:13435483-13461453
chr8	13435400	13435508	+	GA-rich	Low_complexity	Low_complexity	chr8	13435499	13435501	+	ENSMUST00000210804.1,ENSMUSG00000038457.17	Tmem255b	ENSMUSG00000038457.17	ENSMUST00000210804.1	protein_coding	chr8:13435500-13461452
chr8	13546838	13547230	-	MTC	LTR	ERVL-MaLR	chr8	13547027	13547029	-	ENSMUST00000210253.1,ENSMUSG00000110278.1	Gm5608	ENSMUSG00000110278.1	ENSMUST00000210253.1	lincRNA	chr8:13537678-13547028
chr8	13583956	13584075	+	(TCTCTG)n	Simple_repeat	Simple_repeat	chr8	13584037	13584039	-	ENSMUST00000137822.1,ENSMUSG00000031453.16	Rasa3	ENSMUSG00000031453.16	ENSMUST00000137822.1	protein_coding	chr8:13566950-13584038
chr8	13708183	13708445	+	RLTR10B	LTR	ERVK	chr8	13708284	13708286	+	ENSMUST00000208283.1,ENSMUSG00000090336.5	Cfap97d2	ENSMUSG00000090336.5	ENSMUST00000208283.1	protein_coding	chr8:13708285-13740042
chr8	13974753	13974792	+	GC_rich	Low_complexity	Low_complexity	chr8	13974776	13974778	-	ENSMUST00000062613.11,ENSMUSG00000050052.12	Tdrp	ENSMUSG00000050052.12	ENSMUST00000062613.11	protein_coding	chr8:13952008-13974777
chr8	13985981	13986334	-	RMER10A	LTR	ERVL	chr8	13986089	13986091	+	ENSMUST00000209784.1,ENSMUSG00000110058.1	Gm5907	ENSMUSG00000110058.1	ENSMUST00000209784.1	lincRNA	chr8:13986090-14003561
chr8	14911684	14911721	+	GC_rich	Low_complexity	Low_complexity	chr8	14911716	14911718	+	ENSMUST00000160619.1,ENSMUSG00000071176.10	Arhgef10	ENSMUSG00000071176.10	ENSMUST00000160619.1	protein_coding	chr8:14911717-14928291
chr8	15141092	15141320	+	MTD	LTR	ERVL-MaLR	chr8	15141193	15141195	+	ENSMUST00000209946.1,ENSMUSG00000110286.1	Gm7706	ENSMUSG00000110286.1	ENSMUST00000209946.1	lincRNA	chr8:15141194-15166404
chr8	15375614	15376121	-	Lx9	LINE	L1	chr8	15375638	15375640	+	ENSMUST00000209934.1,ENSMUSG00000109748.1	Gm35392	ENSMUSG00000109748.1	ENSMUST00000209934.1	lincRNA	chr8:15375639-15382429
chr8	15413769	15414290	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr8	15413979	15413981	+	ENSMUST00000177816.1,ENSMUSG00000094608.1	Gm25871	ENSMUSG00000094608.1	ENSMUST00000177816.1	miRNA	chr8:15413980-15414089
chr8	15418325	15418846	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr8	15418535	15418537	+	ENSMUST00000179579.1,ENSMUSG00000094971.1	Gm25255	ENSMUSG00000094971.1	ENSMUST00000179579.1	miRNA	chr8:15418536-15418645
chr8	15581719	15582132	+	MTB_Mm	LTR	ERVL-MaLR	chr8	15581942	15581944	+	ENSMUST00000211306.1,ENSMUSG00000110392.1	Gm45676	ENSMUSG00000110392.1	ENSMUST00000211306.1	lincRNA	chr8:15581943-15584719
chr8	15629580	15630121	+	L1_Mus1	LINE	L1	chr8	15629980	15629982	+	ENSMUST00000211202.1,ENSMUSG00000110201.1	Gm45675	ENSMUSG00000110201.1	ENSMUST00000211202.1	TEC	chr8:15629981-15633409
chr8	16750985	16751796	+	RMER17A	LTR	ERVK	chr8	16751318	16751320	+	ENSMUST00000209240.1,ENSMUSG00000110132.1	Gm45394	ENSMUSG00000110132.1	ENSMUST00000209240.1	TEC	chr8:16751319-16752493
chr8	17535378	17535442	+	G-rich	Low_complexity	Low_complexity	chr8	17535384	17535386	-	ENSMUST00000133933.1,ENSMUSG00000060924.15	Csmd1	ENSMUSG00000060924.15	ENSMUST00000133933.1	protein_coding	chr8:17214756-17535385
chr8	18699426	18699615	-	L3	LINE	CR1	chr8	18699546	18699548	-	ENSMUST00000170200.1,ENSMUSG00000031465.6	Angpt2	ENSMUSG00000031465.6	ENSMUST00000170200.1	protein_coding	chr8:18692087-18699547
chr8	19187996	19188418	-	MLTR18B_MM	LTR	ERVK	chr8	19188014	19188016	-	ENSMUST00000212621.1,ENSMUSG00000110542.1	Gm39139	ENSMUSG00000110542.1	ENSMUST00000212621.1	lincRNA	chr8:19163534-19188015
chr8	19535377	19535441	+	GC_rich	Low_complexity	Low_complexity	chr8	19535407	19535409	-	ENSMUST00000184614.1,ENSMUSG00000098476.1	Gm27852	ENSMUSG00000098476.1	ENSMUST00000184614.1	miRNA	chr8:19535319-19535408
chr8	19941529	19946462	-	L1_Mus2	LINE	L1	chr8	19943264	19943266	-	ENSMUST00000212649.1,ENSMUSG00000110460.1	Gm20786	ENSMUSG00000110460.1	ENSMUST00000212649.1	processed_pseudogene	chr8:19942830-19943265
chr8	21040255	21040360	-	U6	snRNA	snRNA	chr8	21040359	21040361	-	ENSMUST00000101848.2,ENSMUSG00000094406.1	Gm23142	ENSMUSG00000094406.1	ENSMUST00000101848.2	snRNA	chr8:21040256-21040360
chr8	21176767	21176872	-	U6	snRNA	snRNA	chr8	21176871	21176873	-	ENSMUST00000101893.2,ENSMUSG00000095431.1	Gm26240	ENSMUSG00000095431.1	ENSMUST00000101893.2	snRNA	chr8:21176768-21176872
chr8	21548059	21548165	-	U6	snRNA	snRNA	chr8	21548164	21548166	-	ENSMUST00000101982.1,ENSMUSG00000075934.1	Gm24423	ENSMUSG00000075934.1	ENSMUST00000101982.1	snRNA	chr8:21548060-21548165
chr8	21937427	21938377	-	MMERVK10C-int	LTR	ERVK	chr8	21938351	21938353	+	ENSMUST00000076786.2,ENSMUSG00000058052.2	Defb35	ENSMUSG00000058052.2	ENSMUST00000076786.2	protein_coding	chr8:21938352-21940878
chr8	22170105	22170243	+	B1_Mus1	SINE	Alu	chr8	22170168	22170170	-	ENSMUST00000211629.1,ENSMUSG00000037725.8	Ckap2	ENSMUSG00000037725.8	ENSMUST00000211629.1	protein_coding	chr8:22168445-22170169
chr8	22410432	22410885	-	RMER5	LTR	ERV1	chr8	22410456	22410458	+	ENSMUST00000211758.1,ENSMUSG00000110129.1	Gm45453	ENSMUSG00000110129.1	ENSMUST00000211758.1	TEC	chr8:22410457-22411309
chr8	22480288	22480404	-	B4A	SINE	B4	chr8	22480290	22480292	+	ENSMUST00000180411.2,ENSMUSG00000097042.2	Gm17491	ENSMUSG00000097042.2	ENSMUST00000180411.2	sense_intronic	chr8:22480291-22483332
chr8	22586046	22586148	+	ID4	SINE	ID	chr8	22586120	22586122	-	ENSMUST00000211222.1,ENSMUSG00000008892.12	Vdac3	ENSMUSG00000008892.12	ENSMUST00000211222.1	protein_coding	chr8:22581948-22586121
chr8	22974834	22974905	+	G-rich	Low_complexity	Low_complexity	chr8	22974843	22974845	+	ENSMUST00000110688.8,ENSMUSG00000031543.18	Ank1	ENSMUSG00000031543.18	ENSMUST00000110688.8	protein_coding	chr8:22974844-23149933
chr8	22974834	22974905	+	G-rich	Low_complexity	Low_complexity	chr8	22974881	22974883	+	ENSMUST00000121802.8,ENSMUSG00000031543.18	Ank1	ENSMUSG00000031543.18	ENSMUST00000121802.8	protein_coding	chr8:22974882-23150494
chr8	23101969	23102107	+	MER5A1	DNA	hAT-Charlie	chr8	23102095	23102097	-	ENSMUST00000197671.1,ENSMUSG00000106605.1	Gm44365	ENSMUSG00000106605.1	ENSMUST00000197671.1	miRNA	chr8:23101972-23102096
chr8	23752706	23752826	-	L1ME4b	LINE	L1	chr8	23752764	23752766	-	ENSMUST00000209073.1,ENSMUSG00000109158.1	Gm45166	ENSMUSG00000109158.1	ENSMUST00000209073.1	TEC	chr8:23752083-23752765
chr8	24412174	24412488	+	RLTR12E	LTR	ERVK	chr8	24412178	24412180	+	ENSMUST00000208709.1,ENSMUSG00000109141.1	Gm30692	ENSMUSG00000109141.1	ENSMUST00000208709.1	lincRNA	chr8:24412179-24416937
chr8	24938296	24938400	+	U6	snRNA	snRNA	chr8	24938299	24938301	+	ENSMUST00000158111.1,ENSMUSG00000088736.1	Gm23898	ENSMUSG00000088736.1	ENSMUST00000158111.1	snRNA	chr8:24938300-24938402
chr8	25106764	25107026	+	B4A	SINE	B4	chr8	25106997	25106999	+	ENSMUST00000210097.1,ENSMUSG00000110148.1	5830408C22Rik	ENSMUSG00000110148.1	ENSMUST00000210097.1	processed_transcript	chr8:25106998-25109986
chr8	25162452	25162629	+	B3	SINE	B2	chr8	25162570	25162572	-	ENSMUST00000209441.1,ENSMUSG00000065954.11	Tacc1	ENSMUSG00000065954.11	ENSMUST00000209441.1	protein_coding	chr8:25157729-25162571
chr8	25201443	25201531	+	C-rich	Low_complexity	Low_complexity	chr8	25201448	25201450	-	ENSMUST00000084512.10,ENSMUSG00000065954.11	Tacc1	ENSMUSG00000065954.11	ENSMUST00000084512.10	protein_coding	chr8:25154552-25201449
chr8	25201443	25201531	+	C-rich	Low_complexity	Low_complexity	chr8	25201448	25201450	-	ENSMUST00000211622.1,ENSMUSG00000065954.11	Tacc1	ENSMUSG00000065954.11	ENSMUST00000211622.1	protein_coding	chr8:25167569-25201449
chr8	25453755	25454205	-	ORR1G-int	LTR	ERVL-MaLR	chr8	25454106	25454108	-	ENSMUST00000210204.1,ENSMUSG00000110399.1	Gm45238	ENSMUSG00000110399.1	ENSMUST00000210204.1	lincRNA	chr8:25443668-25454107
chr8	25553513	25553632	+	PB1D9	SINE	Alu	chr8	25553559	25553561	-	ENSMUST00000140451.1,ENSMUSG00000086134.1	Gm16159	ENSMUSG00000086134.1	ENSMUST00000140451.1	antisense	chr8:25552678-25553560
chr8	25565998	25566189	-	B2_Mm2	SINE	B2	chr8	25565999	25566001	+	ENSMUST00000210504.1,ENSMUSG00000031565.18	Fgfr1	ENSMUSG00000031565.18	ENSMUST00000210504.1	protein_coding	chr8:25566000-25569323
chr8	25569356	25569545	+	B1_Mur4	SINE	Alu	chr8	25569485	25569487	+	ENSMUST00000145218.7,ENSMUSG00000031565.18	Fgfr1	ENSMUSG00000031565.18	ENSMUST00000145218.7	protein_coding	chr8:25569486-25572395
chr8	25602252	25602298	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	25602283	25602285	+	ENSMUST00000136107.8,ENSMUSG00000054823.16	Nsd3	ENSMUSG00000054823.16	ENSMUST00000136107.8	protein_coding	chr8:25602284-25674916
chr8	25602252	25602298	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	25602283	25602285	+	ENSMUST00000146919.7,ENSMUSG00000054823.16	Nsd3	ENSMUSG00000054823.16	ENSMUST00000146919.7	protein_coding	chr8:25602284-25677972
chr8	25602252	25602298	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	25602283	25602285	+	ENSMUST00000139966.7,ENSMUSG00000054823.16	Nsd3	ENSMUSG00000054823.16	ENSMUST00000139966.7	protein_coding	chr8:25602284-25714970
chr8	25602252	25602298	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	25602283	25602285	+	ENSMUST00000142395.7,ENSMUSG00000054823.16	Nsd3	ENSMUSG00000054823.16	ENSMUST00000142395.7	protein_coding	chr8:25602284-25719667
chr8	25698510	25698633	-	B1_Mur2	SINE	Alu	chr8	25698527	25698529	+	ENSMUST00000129959.1,ENSMUSG00000054823.16	Nsd3	ENSMUSG00000054823.16	ENSMUST00000129959.1	protein_coding	chr8:25698528-25708080
chr8	25721865	25722027	-	B3A	SINE	B2	chr8	25721980	25721982	+	ENSMUST00000209375.1,ENSMUSG00000031570.17	Plpp5	ENSMUSG00000031570.17	ENSMUST00000209375.1	protein_coding	chr8:25721981-25724226
chr8	25745509	25745697	-	B2_Mm1t	SINE	B2	chr8	25745579	25745581	-	ENSMUST00000210843.1,ENSMUSG00000110127.1	6430710M23Rik	ENSMUSG00000110127.1	ENSMUST00000210843.1	TEC	chr8:25744390-25745580
chr8	25777577	25777691	-	B1F	SINE	Alu	chr8	25777581	25777583	-	ENSMUST00000210103.1,ENSMUSG00000037316.9	Bag4	ENSMUSG00000037316.9	ENSMUST00000210103.1	protein_coding	chr8:25769511-25777582
chr8	25847398	25847861	-	RLTR12C	LTR	ERVK	chr8	25847693	25847695	-	ENSMUST00000110610.7,ENSMUSG00000031575.18	Ash2l	ENSMUSG00000031575.18	ENSMUST00000110610.7	protein_coding	chr8:25816876-25847694
chr8	26015613	26015650	+	GC_rich	Low_complexity	Low_complexity	chr8	26015649	26015651	-	ENSMUST00000016138.10,ENSMUSG00000015994.10	Fnta	ENSMUSG00000015994.10	ENSMUST00000016138.10	protein_coding	chr8:25998722-26015650
chr8	26039980	26040172	+	B2_Mm1a	SINE	B2	chr8	26040040	26040042	-	ENSMUST00000211777.1,ENSMUSG00000037234.17	Hook3	ENSMUSG00000037234.17	ENSMUST00000211777.1	protein_coding	chr8:26038088-26040041
chr8	26079344	26079550	-	B3	SINE	B2	chr8	26079376	26079378	-	ENSMUST00000211292.1,ENSMUSG00000037234.17	Hook3	ENSMUSG00000037234.17	ENSMUST00000211292.1	protein_coding	chr8:26076565-26079377
chr8	26119374	26119419	+	GC_rich	Low_complexity	Low_complexity	chr8	26119374	26119376	+	ENSMUST00000209300.1,ENSMUSG00000013878.18	Rnf170	ENSMUSG00000013878.18	ENSMUST00000209300.1	protein_coding	chr8:26119375-26151790
chr8	26119374	26119419	+	GC_rich	Low_complexity	Low_complexity	chr8	26119379	26119381	+	ENSMUST00000124757.7,ENSMUSG00000013878.18	Rnf170	ENSMUSG00000013878.18	ENSMUST00000124757.7	protein_coding	chr8:26119380-26141325
chr8	26119374	26119419	+	GC_rich	Low_complexity	Low_complexity	chr8	26119382	26119384	+	ENSMUST00000153528.7,ENSMUSG00000013878.18	Rnf170	ENSMUSG00000013878.18	ENSMUST00000153528.7	protein_coding	chr8:26119383-26141124
chr8	26119374	26119419	+	GC_rich	Low_complexity	Low_complexity	chr8	26119387	26119389	+	ENSMUST00000209707.1,ENSMUSG00000013878.18	Rnf170	ENSMUSG00000013878.18	ENSMUST00000209707.1	protein_coding	chr8:26119388-26140967
chr8	26219438	26219479	+	Lx10	LINE	L1	chr8	26219460	26219462	+	ENSMUST00000104842.2,ENSMUSG00000105292.1	Gm44299	ENSMUSG00000105292.1	ENSMUST00000104842.2	miRNA	chr8:26219461-26219549
chr8	26240233	26240408	-	7SK	RNA	RNA	chr8	26240407	26240409	-	ENSMUST00000157356.1,ENSMUSG00000087981.1	Gm22227	ENSMUSG00000087981.1	ENSMUST00000157356.1	misc_RNA	chr8:26240150-26240408
chr8	26760548	26760847	-	ORR1B2	LTR	ERVL-MaLR	chr8	26760560	26760562	-	ENSMUST00000210983.1,ENSMUSG00000109689.1	Gm45646	ENSMUSG00000109689.1	ENSMUST00000210983.1	lincRNA	chr8:26745929-26760561
chr8	27045164	27045311	+	B1_Mus1	SINE	Alu	chr8	27045270	27045272	+	ENSMUST00000210225.1,ENSMUSG00000031485.15	Plpbp	ENSMUSG00000031485.15	ENSMUST00000210225.1	protein_coding	chr8:27045271-27049195
chr8	27050567	27050903	-	ORR1D2	LTR	ERVL-MaLR	chr8	27050773	27050775	+	ENSMUST00000211756.1,ENSMUSG00000031485.15	Plpbp	ENSMUSG00000031485.15	ENSMUST00000211756.1	protein_coding	chr8:27050774-27052341
chr8	27159797	27159873	-	ID4	SINE	ID	chr8	27159827	27159829	+	ENSMUST00000211028.1,ENSMUSG00000109589.1	Gm45267	ENSMUSG00000109589.1	ENSMUST00000211028.1	antisense	chr8:27159828-27170691
chr8	27170961	27171108	-	B1_Mus2	SINE	Alu	chr8	27171011	27171013	-	ENSMUST00000210111.1,ENSMUSG00000109719.1	Gm45266	ENSMUSG00000109719.1	ENSMUST00000210111.1	TEC	chr8:27168840-27171012
chr8	27223652	27223928	-	ORR1A4	LTR	ERVL-MaLR	chr8	27223827	27223829	-	ENSMUST00000211002.1,ENSMUSG00000039720.7	Got1l1	ENSMUSG00000039720.7	ENSMUST00000211002.1	protein_coding	chr8:27200326-27223828
chr8	27223652	27223928	-	ORR1A4	LTR	ERVL-MaLR	chr8	27223827	27223829	-	ENSMUST00000209299.1,ENSMUSG00000039720.7	Got1l1	ENSMUSG00000039720.7	ENSMUST00000209299.1	protein_coding	chr8:27202396-27223828
chr8	27229477	27229682	+	URR1A	DNA	hAT-Charlie	chr8	27229587	27229589	-	ENSMUST00000081438.9,ENSMUSG00000031489.15	Adrb3	ENSMUSG00000031489.15	ENSMUST00000081438.9	protein_coding	chr8:27225776-27229588
chr8	27250467	27250901	-	RMER6A	LTR	ERVK	chr8	27250615	27250617	-	ENSMUST00000211346.1,ENSMUSG00000031489.15	Adrb3	ENSMUSG00000031489.15	ENSMUST00000211346.1	protein_coding	chr8:27228459-27250616
chr8	27421323	27421430	-	U6	snRNA	snRNA	chr8	27421429	27421431	-	ENSMUST00000083433.1,ENSMUSG00000065367.1	Gm24410	ENSMUSG00000065367.1	ENSMUST00000083433.1	snRNA	chr8:27421324-27421430
chr8	29091765	29092407	+	RLTR26B_MM	LTR	ERVK	chr8	29091902	29091904	-	ENSMUST00000210926.1,ENSMUSG00000110263.1	Gm45652	ENSMUSG00000110263.1	ENSMUST00000210926.1	TEC	chr8:29088073-29091903
chr8	29286981	29287271	+	IAPLTR2a2_Mm	LTR	ERVK	chr8	29286980	29286982	-	ENSMUST00000209275.1,ENSMUSG00000110331.1	Nudc-ps1	ENSMUSG00000110331.1	ENSMUST00000209275.1	processed_pseudogene	chr8:29286431-29286981
chr8	30183738	30183940	+	RMER17A	LTR	ERVK	chr8	30183859	30183861	-	ENSMUST00000211360.1,ENSMUSG00000109586.1	Gm6853	ENSMUSG00000109586.1	ENSMUST00000211360.1	transcribed_unprocessed_pseudogene	chr8:30177932-30183860
chr8	30568364	30568710	+	L2a	LINE	L2	chr8	30568392	30568394	+	ENSMUST00000180571.1,ENSMUSG00000097044.1	4933433F19Rik	ENSMUSG00000097044.1	ENSMUST00000180571.1	lincRNA	chr8:30568393-30575573
chr8	31089788	31089824	+	GC_rich	Low_complexity	Low_complexity	chr8	31089803	31089805	+	ENSMUST00000162551.1,ENSMUSG00000039661.14	Dusp26	ENSMUSG00000039661.14	ENSMUST00000162551.1	protein_coding	chr8:31089804-31092232
chr8	31149860	31149968	-	U13	snRNA	snRNA	chr8	31149966	31149968	-	ENSMUST00000157627.1,ENSMUSG00000088252.1	Snord13	ENSMUSG00000088252.1	ENSMUST00000157627.1	snoRNA	chr8:31149864-31149967
chr8	31491851	31492183	+	MLT1A1	LTR	ERVL-MaLR	chr8	31491975	31491977	+	ENSMUST00000211239.1,ENSMUSG00000109605.1	Gm45303	ENSMUSG00000109605.1	ENSMUST00000211239.1	lincRNA	chr8:31491976-31500090
chr8	31663814	31664045	-	LTR33A_	LTR	ERVL	chr8	31663823	31663825	-	ENSMUST00000210303.1,ENSMUSG00000110329.1	Gm45304	ENSMUSG00000110329.1	ENSMUST00000210303.1	lincRNA	chr8:31598979-31663824
chr8	31663814	31664045	-	LTR33A_	LTR	ERVL	chr8	31663827	31663829	-	ENSMUST00000211064.1,ENSMUSG00000110329.1	Gm45304	ENSMUSG00000110329.1	ENSMUST00000211064.1	lincRNA	chr8:31601135-31663828
chr8	31663814	31664045	-	LTR33A_	LTR	ERVL	chr8	31663825	31663827	-	ENSMUST00000210672.1,ENSMUSG00000110329.1	Gm45304	ENSMUSG00000110329.1	ENSMUST00000210672.1	lincRNA	chr8:31625099-31663826
chr8	31918354	31918412	+	A-rich	Low_complexity	Low_complexity	chr8	31918390	31918392	-	ENSMUST00000208497.1,ENSMUSG00000062991.7	Nrg1	ENSMUSG00000062991.7	ENSMUST00000208497.1	protein_coding	chr8:31820782-31918391
chr8	31918354	31918412	+	A-rich	Low_complexity	Low_complexity	chr8	31918383	31918385	-	ENSMUST00000207584.1,ENSMUSG00000062991.7	Nrg1	ENSMUSG00000062991.7	ENSMUST00000207584.1	protein_coding	chr8:31837205-31918384
chr8	31918354	31918412	+	A-rich	Low_complexity	Low_complexity	chr8	31918356	31918358	-	ENSMUST00000208206.1,ENSMUSG00000062991.7	Nrg1	ENSMUSG00000062991.7	ENSMUST00000208206.1	protein_coding	chr8:31916272-31918357
chr8	32186075	32186138	+	MTD	LTR	ERVL-MaLR	chr8	32186128	32186130	+	ENSMUST00000158745.1,ENSMUSG00000089370.1	Gm22140	ENSMUSG00000089370.1	ENSMUST00000158745.1	snRNA	chr8:32186129-32186248
chr8	32942029	32942680	+	L1MC3	LINE	L1	chr8	32942481	32942483	-	ENSMUST00000180220.2,ENSMUSG00000079070.10	Gm3985	ENSMUSG00000079070.10	ENSMUST00000180220.2	lincRNA	chr8:32890475-32942482
chr8	33056023	33056309	-	ORR1E	LTR	ERVL-MaLR	chr8	33056090	33056092	-	ENSMUST00000211548.1,ENSMUSG00000110214.1	Gm45587	ENSMUSG00000110214.1	ENSMUST00000211548.1	lincRNA	chr8:32972831-33056091
chr8	33330199	33330598	+	L2a	LINE	L2	chr8	33330549	33330551	-	ENSMUST00000211498.1,ENSMUSG00000031583.13	Wrn	ENSMUSG00000031583.13	ENSMUST00000211498.1	protein_coding	chr8:33235684-33330550
chr8	33428257	33428740	-	L1MB7	LINE	L1	chr8	33428708	33428710	+	ENSMUST00000059351.7,ENSMUSG00000048544.8	5930422O12Rik	ENSMUSG00000048544.8	ENSMUST00000059351.7	protein_coding	chr8:33428709-33429548
chr8	33635895	33636647	+	RMER13A2	LTR	ERVK	chr8	33636253	33636255	-	ENSMUST00000210807.1,ENSMUSG00000052906.7	Ubxn8	ENSMUSG00000052906.7	ENSMUST00000210807.1	protein_coding	chr8:33626324-33636254
chr8	33668588	33669104	-	L1_Mus2	LINE	L1	chr8	33669001	33669003	+	ENSMUST00000149528.1,ENSMUSG00000031584.16	Gsr	ENSMUSG00000031584.16	ENSMUST00000149528.1	protein_coding	chr8:33669002-33685652
chr8	33929841	33929921	+	C-rich	Low_complexity	Low_complexity	chr8	33929862	33929864	-	ENSMUST00000053251.11,ENSMUSG00000031586.17	Rbpms	ENSMUSG00000031586.17	ENSMUST00000053251.11	protein_coding	chr8:33782643-33929863
chr8	33929841	33929921	+	C-rich	Low_complexity	Low_complexity	chr8	33929840	33929842	-	ENSMUST00000191473.6,ENSMUSG00000031586.17	Rbpms	ENSMUSG00000031586.17	ENSMUST00000191473.6	protein_coding	chr8:33782644-33929841
chr8	33985877	33986001	+	MLT1H1	LTR	ERVL-MaLR	chr8	33985913	33985915	+	ENSMUST00000212322.1,ENSMUSG00000110663.1	Gm39157	ENSMUSG00000110663.1	ENSMUST00000212322.1	lincRNA	chr8:33985914-33990524
chr8	34094524	34094724	-	B3	SINE	B2	chr8	34094547	34094549	+	ENSMUST00000181097.1,ENSMUSG00000097257.1	Gm26768	ENSMUSG00000097257.1	ENSMUST00000181097.1	lincRNA	chr8:34094548-34096149
chr8	34166703	34166841	+	RSINE1	SINE	B4	chr8	34166711	34166713	-	ENSMUST00000183885.1,ENSMUSG00000098785.1	Mir6395	ENSMUSG00000098785.1	ENSMUST00000183885.1	miRNA	chr8:34166622-34166712
chr8	34216688	34217042	+	ORR1B2	LTR	ERVL-MaLR	chr8	34216858	34216860	+	ENSMUST00000188318.1,ENSMUSG00000100605.1	Gm29243	ENSMUSG00000100605.1	ENSMUST00000188318.1	lincRNA	chr8:34216859-34226145
chr8	34295742	34296229	-	MT2_Mm	LTR	ERVL	chr8	34295975	34295977	-	ENSMUST00000116784.1,ENSMUSG00000080434.1	Gm23177	ENSMUSG00000080434.1	ENSMUST00000116784.1	miRNA	chr8:34295856-34295976
chr8	34523243	34523616	+	MLT1F2	LTR	ERVL-MaLR	chr8	34523317	34523319	+	ENSMUST00000211015.1,ENSMUSG00000110015.1	Gm33968	ENSMUSG00000110015.1	ENSMUST00000211015.1	lincRNA	chr8:34523318-34526628
chr8	34657599	34659403	-	IAPEz-int	LTR	ERVK	chr8	34659368	34659370	-	ENSMUST00000210130.1,ENSMUSG00000109846.1	Gm45627	ENSMUSG00000109846.1	ENSMUST00000210130.1	lincRNA	chr8:34658106-34659369
chr8	34966375	34966799	-	RLTR19A	LTR	ERVK	chr8	34966432	34966434	+	ENSMUST00000210951.1,ENSMUSG00000054247.6	Gm9939	ENSMUSG00000054247.6	ENSMUST00000210951.1	bidirectional_promoter_lncRNA	chr8:34966433-34967721
chr8	35222807	35223222	-	LTR73	LTR	ERV1	chr8	35222957	35222959	+	ENSMUST00000209249.1,ENSMUSG00000109607.1	Gm34533	ENSMUSG00000109607.1	ENSMUST00000209249.1	lincRNA	chr8:35222958-35226103
chr8	35719899	35720273	+	MTB-int	LTR	ERVL-MaLR	chr8	35719948	35719950	-	ENSMUST00000209585.1,ENSMUSG00000110335.1	1700015I17Rik	ENSMUSG00000110335.1	ENSMUST00000209585.1	lincRNA	chr8:35707660-35719949
chr8	35724315	35724772	+	MTE-int	LTR	ERVL-MaLR	chr8	35724381	35724383	+	ENSMUST00000210289.1,ENSMUSG00000109714.1	Gm35021	ENSMUSG00000109714.1	ENSMUST00000210289.1	processed_transcript	chr8:35724382-35734768
chr8	35747446	35747535	+	5S	rRNA	rRNA	chr8	35747448	35747450	+	ENSMUST00000157557.1,ENSMUSG00000088182.1	Gm22216	ENSMUSG00000088182.1	ENSMUST00000157557.1	rRNA	chr8:35747449-35747562
chr8	35763736	35764113	+	MLT1A	LTR	ERVL-MaLR	chr8	35764055	35764057	-	ENSMUST00000196525.1,ENSMUSG00000104820.1	Gm44474	ENSMUSG00000104820.1	ENSMUST00000196525.1	miRNA	chr8:35763930-35764056
chr8	35977506	35977579	+	(CATA)n	Simple_repeat	Simple_repeat	chr8	35977577	35977579	-	ENSMUST00000116942.1,ENSMUSG00000080592.1	Gm22030	ENSMUSG00000080592.1	ENSMUST00000116942.1	miRNA	chr8:35977516-35977578
chr8	37027013	37027095	-	ORR1G	LTR	ERVL-MaLR	chr8	37027092	37027094	+	ENSMUST00000210775.1,ENSMUSG00000110158.1	Gm45690	ENSMUSG00000110158.1	ENSMUST00000210775.1	processed_pseudogene	chr8:37027093-37027338
chr8	37096864	37097821	-	L1_Mur3	LINE	L1	chr8	37097017	37097019	+	ENSMUST00000211374.1,ENSMUSG00000110285.1	Gm45524	ENSMUSG00000110285.1	ENSMUST00000211374.1	lincRNA	chr8:37097018-37188061
chr8	37317476	37317578	-	U6	snRNA	snRNA	chr8	37317577	37317579	-	ENSMUST00000083343.1,ENSMUSG00000065277.1	Gm25126	ENSMUSG00000065277.1	ENSMUST00000083343.1	snRNA	chr8:37317477-37317578
chr8	37317578	37318162	-	L1_Mus4	LINE	L1	chr8	37317577	37317579	-	ENSMUST00000083343.1,ENSMUSG00000065277.1	Gm25126	ENSMUSG00000065277.1	ENSMUST00000083343.1	snRNA	chr8:37317477-37317578
chr8	37401020	37402161	+	MMAR1	DNA	TcMar-Mariner	chr8	37401019	37401021	-	ENSMUST00000210980.1,ENSMUSG00000109820.1	Gm45654	ENSMUSG00000109820.1	ENSMUST00000210980.1	processed_pseudogene	chr8:37400898-37401020
chr8	40515818	40515859	-	PB1D9	SINE	Alu	chr8	40515846	40515848	-	ENSMUST00000132032.7,ENSMUSG00000031601.16	Cnot7	ENSMUSG00000031601.16	ENSMUST00000132032.7	protein_coding	chr8:40492542-40515847
chr8	40515818	40515859	-	PB1D9	SINE	Alu	chr8	40515834	40515836	-	ENSMUST00000128237.1,ENSMUSG00000031601.16	Cnot7	ENSMUSG00000031601.16	ENSMUST00000128237.1	protein_coding	chr8:40510023-40515835
chr8	40683647	40683689	+	L1_Mus2	LINE	L1	chr8	40683646	40683648	-	ENSMUST00000210267.1,ENSMUSG00000109658.1	Gm45660	ENSMUSG00000109658.1	ENSMUST00000210267.1	processed_pseudogene	chr8:40683497-40683647
chr8	40874861	40875159	-	L1MB2	LINE	L1	chr8	40874947	40874949	+	ENSMUST00000117077.7,ENSMUSG00000031596.15	Slc7a2	ENSMUSG00000031596.15	ENSMUST00000117077.7	protein_coding	chr8:40874948-40922070
chr8	41217632	41218160	-	RLTR20B3A_MM	LTR	ERVK	chr8	41218138	41218140	+	ENSMUST00000146654.1,ENSMUSG00000085445.1	Gm16348	ENSMUSG00000085445.1	ENSMUST00000146654.1	processed_transcript	chr8:41218139-41220894
chr8	41217632	41218160	-	RLTR20B3A_MM	LTR	ERVK	chr8	41218139	41218141	+	ENSMUST00000142897.1,ENSMUSG00000085445.1	Gm16348	ENSMUSG00000085445.1	ENSMUST00000142897.1	processed_transcript	chr8:41218140-41220521
chr8	41350016	41350165	-	B1_Mus1	SINE	Alu	chr8	41350036	41350038	-	ENSMUST00000126561.7,ENSMUSG00000031591.14	Asah1	ENSMUSG00000031591.14	ENSMUST00000126561.7	protein_coding	chr8:41340661-41350037
chr8	42522201	42522354	+	(TATATG)n	Simple_repeat	Simple_repeat	chr8	42522202	42522204	-	ENSMUST00000104567.1,ENSMUSG00000077755.1	Gm23531	ENSMUSG00000077755.1	ENSMUST00000104567.1	snoRNA	chr8:42522136-42522203
chr8	42742806	42742912	+	U6	snRNA	snRNA	chr8	42742806	42742808	+	ENSMUST00000157687.1,ENSMUSG00000088312.1	Gm26181	ENSMUSG00000088312.1	ENSMUST00000157687.1	snRNA	chr8:42742807-42742912
chr8	43709668	43710389	-	Lx	LINE	L1	chr8	43710048	43710050	-	ENSMUST00000110411.3,ENSMUSG00000079058.3	Adam34	ENSMUSG00000079058.3	ENSMUST00000110411.3	protein_coding	chr8:43650309-43710049
chr8	43914432	43914924	-	MT2_Mm	LTR	ERVL	chr8	43914603	43914605	-	ENSMUST00000209295.1,ENSMUSG00000109993.1	Gm45659	ENSMUSG00000109993.1	ENSMUST00000209295.1	lincRNA	chr8:43908656-43914604
chr8	44547747	44548142	-	MTA_Mm	LTR	ERVL-MaLR	chr8	44548073	44548075	-	ENSMUST00000174944.1,ENSMUSG00000092685.1	Gm26241	ENSMUSG00000092685.1	ENSMUST00000174944.1	miRNA	chr8:44547974-44548074
chr8	44601829	44601944	+	5S	rRNA	rRNA	chr8	44601832	44601834	+	ENSMUST00000157898.1,ENSMUSG00000088523.1	Gm26089	ENSMUSG00000088523.1	ENSMUST00000157898.1	rRNA	chr8:44601833-44601939
chr8	45065400	45065619	+	C-rich	Low_complexity	Low_complexity	chr8	45065417	45065419	-	ENSMUST00000139751.1,ENSMUSG00000066158.7	AY512931	ENSMUSG00000066158.7	ENSMUST00000139751.1	lincRNA	chr8:45060702-45065418
chr8	45110452	45110533	-	RMER21A	LTR	ERV1	chr8	45110480	45110482	+	ENSMUST00000209448.1,ENSMUSG00000110260.1	Gm30504	ENSMUSG00000110260.1	ENSMUST00000209448.1	lincRNA	chr8:45110481-45125631
chr8	45122429	45122909	+	RCHARR1	DNA	hAT-Charlie	chr8	45122650	45122652	+	ENSMUST00000209316.1,ENSMUSG00000110260.1	Gm30504	ENSMUSG00000110260.1	ENSMUST00000209316.1	lincRNA	chr8:45122651-45196360
chr8	45164970	45165471	-	RLTR44D	LTR	ERVK	chr8	45165218	45165220	-	ENSMUST00000209210.1,ENSMUSG00000110231.1	Gm6329	ENSMUSG00000110231.1	ENSMUST00000209210.1	lincRNA	chr8:45160494-45165219
chr8	45186521	45187176	+	RLTR17	LTR	ERVK	chr8	45186740	45186742	+	ENSMUST00000209762.1,ENSMUSG00000110260.1	Gm30504	ENSMUSG00000110260.1	ENSMUST00000209762.1	lincRNA	chr8:45186741-45196541
chr8	45409980	45410099	+	RLTR31D_MM	LTR	ERVK	chr8	45410062	45410064	+	ENSMUST00000210456.1,ENSMUSG00000109785.1	Gm45542	ENSMUSG00000109785.1	ENSMUST00000210456.1	antisense	chr8:45410063-45410760
chr8	45742833	45743205	-	ORR1B1	LTR	ERVL-MaLR	chr8	45743180	45743182	+	ENSMUST00000211442.1,ENSMUSG00000031626.17	Sorbs2	ENSMUSG00000031626.17	ENSMUST00000211442.1	protein_coding	chr8:45743181-45745634
chr8	45992619	45992651	+	(T)n	Simple_repeat	Simple_repeat	chr8	45992624	45992626	+	ENSMUST00000210608.1,ENSMUSG00000031634.13	Ufsp2	ENSMUSG00000031634.13	ENSMUST00000210608.1	protein_coding	chr8:45992625-45994529
chr8	46022243	46022490	+	ORR1E	LTR	ERVL-MaLR	chr8	46022479	46022481	+	ENSMUST00000132341.1,ENSMUSG00000031637.13	Lrp2bp	ENSMUSG00000031637.13	ENSMUST00000132341.1	protein_coding	chr8:46022480-46029448
chr8	46056377	46056839	+	RLTR30D_MM	LTR	ERV1	chr8	46056451	46056453	-	ENSMUST00000136097.1,ENSMUSG00000038291.16	Snx25	ENSMUSG00000038291.16	ENSMUST00000136097.1	protein_coding	chr8:46049404-46056452
chr8	46089593	46089722	+	MIRb	SINE	MIR	chr8	46089692	46089694	-	ENSMUST00000144244.1,ENSMUSG00000038291.16	Snx25	ENSMUSG00000038291.16	ENSMUST00000144244.1	protein_coding	chr8:46056120-46089693
chr8	46107258	46107439	+	7SK	RNA	RNA	chr8	46107258	46107260	+	ENSMUST00000158004.1,ENSMUSG00000088629.1	Gm23030	ENSMUSG00000088629.1	ENSMUST00000158004.1	misc_RNA	chr8:46107259-46107531
chr8	46116602	46116846	+	LTR41B	LTR	ERVL	chr8	46116701	46116703	-	ENSMUST00000176410.7,ENSMUSG00000038291.16	Snx25	ENSMUSG00000038291.16	ENSMUST00000176410.7	protein_coding	chr8:46033272-46116702
chr8	46162089	46162187	+	MLT2B3	LTR	ERVL	chr8	46162089	46162091	+	ENSMUST00000211391.1,ENSMUSG00000109902.1	Gm45693	ENSMUSG00000109902.1	ENSMUST00000211391.1	TEC	chr8:46162090-46163246
chr8	46228899	46229009	-	L1Md_F2	LINE	L1	chr8	46228993	46228995	+	ENSMUST00000099636.4,ENSMUSG00000074978.4	Actg-ps1	ENSMUSG00000074978.4	ENSMUST00000099636.4	processed_pseudogene	chr8:46228994-46230117
chr8	46272050	46272146	+	U6	snRNA	snRNA	chr8	46272050	46272052	+	ENSMUST00000158936.1,ENSMUSG00000089561.1	Gm24669	ENSMUSG00000089561.1	ENSMUST00000158936.1	snRNA	chr8:46272051-46272147
chr8	46363177	46363279	+	L1MB4	LINE	L1	chr8	46363250	46363252	+	ENSMUST00000211698.1,ENSMUSG00000110035.1	Gm30931	ENSMUSG00000110035.1	ENSMUST00000211698.1	lincRNA	chr8:46363251-46367204
chr8	46363177	46363279	+	L1MB4	LINE	L1	chr8	46363255	46363257	+	ENSMUST00000210605.1,ENSMUSG00000110035.1	Gm30931	ENSMUSG00000110035.1	ENSMUST00000210605.1	lincRNA	chr8:46363256-46367176
chr8	46385591	46386040	+	MTC	LTR	ERVL-MaLR	chr8	46385887	46385889	-	ENSMUST00000210694.1,ENSMUSG00000109612.1	Gm45253	ENSMUSG00000109612.1	ENSMUST00000210694.1	lincRNA	chr8:46372106-46385888
chr8	46470879	46471062	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	46471036	46471038	+	ENSMUST00000034046.12,ENSMUSG00000018796.13	Acsl1	ENSMUSG00000018796.13	ENSMUST00000034046.12	protein_coding	chr8:46471037-46536051
chr8	46470879	46471062	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	46471054	46471056	+	ENSMUST00000128746.2,ENSMUSG00000018796.13	Acsl1	ENSMUSG00000018796.13	ENSMUST00000128746.2	protein_coding	chr8:46471055-46516631
chr8	46560047	46560209	-	B3A	SINE	B2	chr8	46560076	46560078	+	ENSMUST00000129371.1,ENSMUSG00000031629.14	Cenpu	ENSMUSG00000031629.14	ENSMUST00000129371.1	protein_coding	chr8:46560077-46562457
chr8	46573098	46573348	-	B4A	SINE	B4	chr8	46573172	46573174	+	ENSMUST00000136724.1,ENSMUSG00000031629.14	Cenpu	ENSMUSG00000031629.14	ENSMUST00000136724.1	protein_coding	chr8:46573173-46578378
chr8	46770959	46771526	-	L1MC4	LINE	L1	chr8	46770984	46770986	-	ENSMUST00000210068.1,ENSMUSG00000110374.1	Gm31172	ENSMUSG00000110374.1	ENSMUST00000210068.1	antisense	chr8:46770553-46770985
chr8	47014083	47014392	-	ORR1A2	LTR	ERVL-MaLR	chr8	47014176	47014178	-	ENSMUST00000210828.1,ENSMUSG00000109888.1	Gm45600	ENSMUSG00000109888.1	ENSMUST00000210828.1	antisense	chr8:46994795-47014177
chr8	47227094	47227175	-	MER3	DNA	hAT-Charlie	chr8	47227165	47227167	-	ENSMUST00000211539.1,ENSMUSG00000109606.1	Gm45537	ENSMUSG00000109606.1	ENSMUST00000211539.1	TEC	chr8:47224459-47227166
chr8	47511313	47511460	-	B1_Mus1	SINE	Alu	chr8	47511347	47511349	-	ENSMUST00000120987.1,ENSMUSG00000038102.15	Trappc11	ENSMUSG00000038102.15	ENSMUST00000120987.1	protein_coding	chr8:47504245-47511348
chr8	47557527	47557649	+	B3A	SINE	B2	chr8	47557528	47557530	+	ENSMUST00000210981.1,ENSMUSG00000110363.1	Gm45576	ENSMUSG00000110363.1	ENSMUST00000210981.1	lincRNA	chr8:47557529-47567896
chr8	47591556	47591747	-	B3	SINE	B2	chr8	47591667	47591669	+	ENSMUST00000184727.1,ENSMUSG00000098402.1	Gm27409	ENSMUSG00000098402.1	ENSMUST00000184727.1	miRNA	chr8:47591668-47591747
chr8	47719246	47719336	+	5S	rRNA	rRNA	chr8	47719245	47719247	+	ENSMUST00000082574.1,ENSMUSG00000064508.1	n-R5s96	ENSMUSG00000064508.1	ENSMUST00000082574.1	rRNA	chr8:47719246-47719369
chr8	47750059	47750265	+	ORR1F	LTR	ERVL-MaLR	chr8	47750133	47750135	-	ENSMUST00000212428.1,ENSMUSG00000110665.1	Gm31786	ENSMUSG00000110665.1	ENSMUST00000212428.1	lincRNA	chr8:47746357-47750134
chr8	47766039	47766176	+	(GAA)n	Simple_repeat	Simple_repeat	chr8	47766124	47766126	-	ENSMUST00000212236.1,ENSMUSG00000110604.1	Gm45824	ENSMUSG00000110604.1	ENSMUST00000212236.1	lincRNA	chr8:47764054-47766125
chr8	47773485	47773560	+	ORR1A4	LTR	ERVL-MaLR	chr8	47773554	47773556	+	ENSMUST00000211965.1,ENSMUSG00000110539.1	Gm45864	ENSMUSG00000110539.1	ENSMUST00000211965.1	lincRNA	chr8:47773555-47777802
chr8	47899181	47899272	+	5S	rRNA	rRNA	chr8	47899181	47899183	+	ENSMUST00000082585.1,ENSMUSG00000064519.1	n-R5s97	ENSMUSG00000064519.1	ENSMUST00000082585.1	rRNA	chr8:47899182-47899294
chr8	48008526	48009350	-	RCHARR1	DNA	hAT-Charlie	chr8	48009132	48009134	-	ENSMUST00000212073.1,ENSMUSG00000110624.1	Gm32052	ENSMUSG00000110624.1	ENSMUST00000212073.1	lincRNA	chr8:48002210-48009133
chr8	48843701	48843755	+	(TG)n	Simple_repeat	Simple_repeat	chr8	48843721	48843723	+	ENSMUST00000190967.1,ENSMUSG00000100706.6	Gm19744	ENSMUSG00000100706.6	ENSMUST00000190967.1	processed_transcript	chr8:48843722-48847486
chr8	49231942	49232032	+	B4	SINE	B4	chr8	49231968	49231970	-	ENSMUST00000212762.1,ENSMUSG00000110465.1	Gm45832	ENSMUSG00000110465.1	ENSMUST00000212762.1	TEC	chr8:49230527-49231969
chr8	49818754	49819285	+	Lx8b	LINE	L1	chr8	49818936	49818938	+	ENSMUST00000210742.1,ENSMUSG00000109907.1	Gm45321	ENSMUSG00000109907.1	ENSMUST00000210742.1	lincRNA	chr8:49818937-49843435
chr8	49837747	49840228	+	IAPEz-int	LTR	ERVK	chr8	49838067	49838069	+	ENSMUST00000211642.1,ENSMUSG00000110051.1	Gm45322	ENSMUSG00000110051.1	ENSMUST00000211642.1	lincRNA	chr8:49838068-49839428
chr8	50013184	50013581	-	MTC	LTR	ERVL-MaLR	chr8	50013383	50013385	-	ENSMUST00000209853.1,ENSMUSG00000110375.1	Gm45323	ENSMUSG00000110375.1	ENSMUST00000209853.1	lincRNA	chr8:49959483-50013384
chr8	50517357	50517790	-	Lx8	LINE	L1	chr8	50517679	50517681	-	ENSMUST00000209514.1,ENSMUSG00000109741.1	Gm45455	ENSMUSG00000109741.1	ENSMUST00000209514.1	lincRNA	chr8:50201613-50517680
chr8	50517357	50517790	-	Lx8	LINE	L1	chr8	50517641	50517643	-	ENSMUST00000211156.1,ENSMUSG00000109741.1	Gm45455	ENSMUSG00000109741.1	ENSMUST00000211156.1	lincRNA	chr8:50392710-50517642
chr8	50563241	50563301	+	U7	snRNA	snRNA	chr8	50563240	50563242	+	ENSMUST00000157144.1,ENSMUSG00000087769.1	Gm23986	ENSMUSG00000087769.1	ENSMUST00000157144.1	snRNA	chr8:50563241-50563303
chr8	52030063	52031747	+	L1_Mus3	LINE	L1	chr8	52031270	52031272	-	ENSMUST00000211163.1,ENSMUSG00000110163.1	Gm45389	ENSMUSG00000110163.1	ENSMUST00000211163.1	lincRNA	chr8:52024987-52031271
chr8	52078604	52078734	+	U1	snRNA	snRNA	chr8	52078603	52078605	+	ENSMUST00000083403.1,ENSMUSG00000065337.1	Gm24929	ENSMUSG00000065337.1	ENSMUST00000083403.1	snRNA	chr8:52078604-52078742
chr8	52079755	52080514	+	Lx5c	LINE	L1	chr8	52080162	52080164	+	ENSMUST00000211101.1,ENSMUSG00000109823.1	Gm45388	ENSMUSG00000109823.1	ENSMUST00000211101.1	lincRNA	chr8:52080163-52099750
chr8	52079755	52080514	+	Lx5c	LINE	L1	chr8	52080404	52080406	+	ENSMUST00000209922.1,ENSMUSG00000109823.1	Gm45388	ENSMUSG00000109823.1	ENSMUST00000209922.1	lincRNA	chr8:52080405-52090085
chr8	52336918	52337105	-	U2	snRNA	snRNA	chr8	52337104	52337106	-	ENSMUST00000082748.1,ENSMUSG00000064682.1	Gm25813	ENSMUSG00000064682.1	ENSMUST00000082748.1	snRNA	chr8:52336915-52337105
chr8	52356370	52356715	+	RLTR10D2	LTR	ERVK	chr8	52356610	52356612	+	ENSMUST00000210977.1,ENSMUSG00000110013.1	1190028D05Rik	ENSMUSG00000110013.1	ENSMUST00000210977.1	lincRNA	chr8:52356611-52403339
chr8	53435837	53436180	+	RLTR41	LTR	ERV1	chr8	53436099	53436101	+	ENSMUST00000210964.1,ENSMUSG00000110362.1	Gm45554	ENSMUSG00000110362.1	ENSMUST00000210964.1	lincRNA	chr8:53436100-53480498
chr8	54513955	54514350	-	MTA_Mm	LTR	ERVL-MaLR	chr8	54514149	54514151	-	ENSMUST00000209929.1,ENSMUSG00000110403.1	Gm45553	ENSMUSG00000110403.1	ENSMUST00000209929.1	TEC	chr8:54513644-54514150
chr8	54706965	54707160	-	B3	SINE	B2	chr8	54706980	54706982	-	ENSMUST00000148408.3,ENSMUSG00000039375.16	Wdr17	ENSMUSG00000039375.16	ENSMUST00000148408.3	protein_coding	chr8:54696269-54706981
chr8	54708663	54709199	+	RLTR10	LTR	ERVK	chr8	54708986	54708988	+	ENSMUST00000161681.1,ENSMUSG00000089719.1	Gm15758	ENSMUSG00000089719.1	ENSMUST00000161681.1	processed_transcript	chr8:54708987-54710381
chr8	54708663	54709199	+	RLTR10	LTR	ERVK	chr8	54709034	54709036	+	ENSMUST00000162822.1,ENSMUSG00000089719.1	Gm15758	ENSMUSG00000089719.1	ENSMUST00000162822.1	processed_transcript	chr8:54709035-54710319
chr8	54866010	54866263	-	Lx5b	LINE	L1	chr8	54866260	54866262	+	ENSMUST00000122549.1,ENSMUSG00000084498.1	n-R5s98	ENSMUSG00000084498.1	ENSMUST00000122549.1	rRNA	chr8:54866261-54866379
chr8	55028241	55028422	-	L1Md_F2	LINE	L1	chr8	55028400	55028402	+	ENSMUST00000210090.1,ENSMUSG00000109927.1	Gm45264	ENSMUSG00000109927.1	ENSMUST00000210090.1	TEC	chr8:55028401-55032395
chr8	55042982	55043366	-	MLT1D	LTR	ERVL-MaLR	chr8	55043058	55043060	+	ENSMUST00000209917.1,ENSMUSG00000109942.1	Gm45262	ENSMUSG00000109942.1	ENSMUST00000209917.1	TEC	chr8:55043059-55044521
chr8	55055823	55055939	-	RSINE1	SINE	B4	chr8	55055873	55055875	+	ENSMUST00000209781.1,ENSMUSG00000110047.1	A230085B16Rik	ENSMUSG00000110047.1	ENSMUST00000209781.1	TEC	chr8:55055874-55057729
chr8	55068046	55073864	-	L1Md_F2	LINE	L1	chr8	55073248	55073250	+	ENSMUST00000211464.1,ENSMUSG00000110249.1	9330121K16Rik	ENSMUSG00000110249.1	ENSMUST00000211464.1	TEC	chr8:55073249-55077134
chr8	56888518	56888903	-	L1MA9	LINE	L1	chr8	56888892	56888894	-	ENSMUST00000209257.1,ENSMUSG00000110000.1	Gm33501	ENSMUSG00000110000.1	ENSMUST00000209257.1	lincRNA	chr8:56860568-56888893
chr8	56888518	56888903	-	L1MA9	LINE	L1	chr8	56888889	56888891	-	ENSMUST00000209983.1,ENSMUSG00000110000.1	Gm33501	ENSMUSG00000110000.1	ENSMUST00000209983.1	lincRNA	chr8:56872080-56888890
chr8	56952584	56952864	+	ORR1A4	LTR	ERVL-MaLR	chr8	56952828	56952830	+	ENSMUST00000211123.1,ENSMUSG00000110043.1	Gm7328	ENSMUSG00000110043.1	ENSMUST00000211123.1	processed_pseudogene	chr8:56952829-56955053
chr8	57305314	57305375	+	B4	SINE	B4	chr8	57305357	57305359	-	ENSMUST00000186214.1,ENSMUSG00000100510.7	AV026068	ENSMUSG00000100510.7	ENSMUST00000186214.1	processed_transcript	chr8:57304271-57305358
chr8	57505674	57506021	+	ORR1A0	LTR	ERVL-MaLR	chr8	57505814	57505816	+	ENSMUST00000210752.1,ENSMUSG00000096917.2	2500002B13Rik	ENSMUSG00000096917.2	ENSMUST00000210752.1	processed_transcript	chr8:57505815-57506731
chr8	57652751	57652788	+	(CA)n	Simple_repeat	Simple_repeat	chr8	57652761	57652763	+	ENSMUST00000210975.1,ENSMUSG00000110419.1	AW046200	ENSMUSG00000110419.1	ENSMUST00000210975.1	bidirectional_promoter_lncRNA	chr8:57652762-57663426
chr8	57653031	57653098	+	C-rich	Low_complexity	Low_complexity	chr8	57653030	57653032	-	ENSMUST00000034021.11,ENSMUSG00000031608.13	Galnt7	ENSMUSG00000031608.13	ENSMUST00000034021.11	protein_coding	chr8:57523828-57653031
chr8	57653031	57653098	+	C-rich	Low_complexity	Low_complexity	chr8	57653031	57653033	-	ENSMUST00000156907.1,ENSMUSG00000031608.13	Galnt7	ENSMUSG00000031608.13	ENSMUST00000156907.1	protein_coding	chr8:57541995-57653032
chr8	57891720	57891744	+	AT_rich	Low_complexity	Low_complexity	chr8	57891742	57891744	+	ENSMUST00000210669.1,ENSMUSG00000109753.1	Gm45633	ENSMUSG00000109753.1	ENSMUST00000210669.1	TEC	chr8:57891743-57894995
chr8	58523176	58524254	+	L1_Mur3	LINE	L1	chr8	58523293	58523295	+	ENSMUST00000161344.1,ENSMUSG00000090003.1	Gm15882	ENSMUSG00000090003.1	ENSMUST00000161344.1	antisense	chr8:58523294-58524326
chr8	58701044	58701069	+	(A)n	Simple_repeat	Simple_repeat	chr8	58701043	58701045	-	ENSMUST00000188531.6,ENSMUSG00000096914.3	Galntl6	ENSMUSG00000096914.3	ENSMUST00000188531.6	protein_coding	chr8:58427700-58701044
chr8	59419139	59419943	+	RMER13B	LTR	ERVK	chr8	59419305	59419307	+	ENSMUST00000209385.1,ENSMUSG00000110381.1	Gm34370	ENSMUSG00000110381.1	ENSMUST00000209385.1	lincRNA	chr8:59419306-59451513
chr8	59825293	59826034	+	Lx9	LINE	L1	chr8	59825648	59825650	+	ENSMUST00000209438.1,ENSMUSG00000110406.1	4930470O06Rik	ENSMUSG00000110406.1	ENSMUST00000209438.1	lincRNA	chr8:59825649-59844723
chr8	60079589	60079691	+	U6	snRNA	snRNA	chr8	60079589	60079591	+	ENSMUST00000083793.1,ENSMUSG00000065727.1	Gm26164	ENSMUSG00000065727.1	ENSMUST00000083793.1	snRNA	chr8:60079590-60079693
chr8	60503152	60503238	+	L2c	LINE	L2	chr8	60503197	60503199	-	ENSMUST00000093494.5,ENSMUSG00000070023.5	Gm10283	ENSMUSG00000070023.5	ENSMUST00000093494.5	protein_coding	chr8:60430024-60503198
chr8	61024015	61024138	-	B2_Mm2	SINE	B2	chr8	61024130	61024132	+	ENSMUST00000210310.1,ENSMUSG00000110046.1	Gm45484	ENSMUSG00000110046.1	ENSMUST00000210310.1	TEC	chr8:61024131-61025271
chr8	61491312	61491489	-	B3A	SINE	B2	chr8	61491409	61491411	+	ENSMUST00000155442.1,ENSMUSG00000031641.14	Cbr4	ENSMUSG00000031641.14	ENSMUST00000155442.1	protein_coding	chr8:61491410-61503329
chr8	61533824	61533868	+	A-rich	Low_complexity	Low_complexity	chr8	61533840	61533842	-	ENSMUST00000136825.1,ENSMUSG00000058056.16	Palld	ENSMUSG00000058056.16	ENSMUST00000136825.1	protein_coding	chr8:61525121-61533841
chr8	61912586	61913107	-	RMER1C	Other	Other	chr8	61913059	61913061	+	ENSMUST00000211790.1,ENSMUSG00000086866.2	4930512H18Rik	ENSMUSG00000086866.2	ENSMUST00000211790.1	antisense	chr8:61913060-61922834
chr8	62634536	62634815	-	L2a	LINE	L2	chr8	62634644	62634646	-	ENSMUST00000211385.1,ENSMUSG00000109767.1	Gm45460	ENSMUSG00000109767.1	ENSMUST00000211385.1	lincRNA	chr8:62616317-62634645
chr8	62749503	62749854	-	RLTR14_RN	LTR	ERV1	chr8	62749685	62749687	+	ENSMUST00000211267.1,ENSMUSG00000110364.1	Gm45462	ENSMUSG00000110364.1	ENSMUST00000211267.1	lincRNA	chr8:62749686-62761858
chr8	62853302	62856728	+	Lx4A	LINE	L1	chr8	62855381	62855383	-	ENSMUST00000209882.1,ENSMUSG00000109994.1	Gm45459	ENSMUSG00000109994.1	ENSMUST00000209882.1	lincRNA	chr8:62646335-62855382
chr8	62951289	62951414	+	G-rich	Low_complexity	Low_complexity	chr8	62951360	62951362	+	ENSMUST00000138398.7,ENSMUSG00000054162.15	Spock3	ENSMUSG00000054162.15	ENSMUST00000138398.7	protein_coding	chr8:62951361-63152865
chr8	62951289	62951414	+	G-rich	Low_complexity	Low_complexity	chr8	62951360	62951362	+	ENSMUST00000119068.7,ENSMUSG00000054162.15	Spock3	ENSMUSG00000054162.15	ENSMUST00000119068.7	protein_coding	chr8:62951361-63357103
chr8	62979088	62979306	+	URR1A	DNA	hAT-Charlie	chr8	62979220	62979222	+	ENSMUST00000211726.1,ENSMUSG00000109744.1	Gm45461	ENSMUSG00000109744.1	ENSMUST00000211726.1	TEC	chr8:62979221-62983755
chr8	63108807	63108950	-	L1_Mus1	LINE	L1	chr8	63108806	63108808	-	ENSMUST00000157794.1,ENSMUSG00000088419.1	Gm24236	ENSMUSG00000088419.1	ENSMUST00000157794.1	snoRNA	chr8:63108674-63108807
chr8	63540751	63547040	-	L1_Mus1	LINE	L1	chr8	63545942	63545944	+	ENSMUST00000209554.1,ENSMUSG00000109999.1	Gm35368	ENSMUSG00000109999.1	ENSMUST00000209554.1	lincRNA	chr8:63545943-63552805
chr8	63739450	63739803	-	IAPLTR1_Mm	LTR	ERVK	chr8	63739576	63739578	-	ENSMUST00000211745.1,ENSMUSG00000109825.1	Gm45589	ENSMUSG00000109825.1	ENSMUST00000211745.1	lincRNA	chr8:63700863-63739577
chr8	63739450	63739803	-	IAPLTR1_Mm	LTR	ERVK	chr8	63739561	63739563	-	ENSMUST00000209366.1,ENSMUSG00000109825.1	Gm45589	ENSMUSG00000109825.1	ENSMUST00000209366.1	lincRNA	chr8:63701125-63739562
chr8	63739450	63739803	-	IAPLTR1_Mm	LTR	ERVK	chr8	63739573	63739575	-	ENSMUST00000210048.1,ENSMUSG00000109825.1	Gm45589	ENSMUSG00000109825.1	ENSMUST00000210048.1	lincRNA	chr8:63701227-63739574
chr8	64620240	64620496	+	MLT1B	LTR	ERVL-MaLR	chr8	64620484	64620486	-	ENSMUST00000210680.1,ENSMUSG00000037852.8	Cpe	ENSMUSG00000037852.8	ENSMUST00000210680.1	protein_coding	chr8:64609191-64620485
chr8	64710870	64711216	-	ORR1A0	LTR	ERVL-MaLR	chr8	64711075	64711077	-	ENSMUST00000210776.1,ENSMUSG00000110368.1	Gm45518	ENSMUSG00000110368.1	ENSMUST00000210776.1	lincRNA	chr8:64701107-64711076
chr8	64730860	64731060	+	B3	SINE	B2	chr8	64731058	64731060	-	ENSMUST00000147419.1,ENSMUSG00000031604.10	Msmo1	ENSMUSG00000031604.10	ENSMUST00000147419.1	protein_coding	chr8:64723665-64731059
chr8	64809090	64810507	-	L1_Mus1	LINE	L1	chr8	64809137	64809139	-	ENSMUST00000210294.1,ENSMUSG00000109879.1	Gm10997	ENSMUSG00000109879.1	ENSMUST00000210294.1	TEC	chr8:64807639-64809138
chr8	64931965	64932085	+	7SK	RNA	RNA	chr8	64931971	64931973	+	ENSMUST00000158680.1,ENSMUSG00000089305.1	Gm26210	ENSMUSG00000089305.1	ENSMUST00000158680.1	misc_RNA	chr8:64931972-64932062
chr8	65667613	65667701	-	U6	snRNA	snRNA	chr8	65667700	65667702	-	ENSMUST00000082829.1,ENSMUSG00000064763.1	Gm23515	ENSMUSG00000064763.1	ENSMUST00000082829.1	snRNA	chr8:65667595-65667701
chr8	65817571	65817763	-	ORR1F	LTR	ERVL-MaLR	chr8	65817594	65817596	-	ENSMUST00000118929.1,ENSMUSG00000083905.1	Gm15355	ENSMUSG00000083905.1	ENSMUST00000118929.1	processed_pseudogene	chr8:65817311-65817595
chr8	66002345	66002452	-	U6	snRNA	snRNA	chr8	66002451	66002453	-	ENSMUST00000082953.1,ENSMUSG00000064887.1	Gm24205	ENSMUSG00000064887.1	ENSMUST00000082953.1	snRNA	chr8:66002346-66002452
chr8	66780003	66780099	+	CT-rich	Low_complexity	Low_complexity	chr8	66780079	66780081	+	ENSMUST00000211844.1,ENSMUSG00000110454.1	Gm45911	ENSMUSG00000110454.1	ENSMUST00000211844.1	lincRNA	chr8:66780080-66795561
chr8	67176599	67177594	-	RLTR10-int	LTR	ERVK	chr8	67176770	67176772	+	ENSMUST00000211955.1,ENSMUSG00000110512.1	Gm45827	ENSMUSG00000110512.1	ENSMUST00000211955.1	lincRNA	chr8:67176771-67177787
chr8	67362571	67365058	+	Lx6	LINE	L1	chr8	67365003	67365005	-	ENSMUST00000148610.1,ENSMUSG00000074292.4	Gm10660	ENSMUSG00000074292.4	ENSMUST00000148610.1	lincRNA	chr8:67352104-67365004
chr8	68062267	68062299	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	68062285	68062287	-	ENSMUST00000150169.7,ENSMUSG00000030465.19	Psd3	ENSMUSG00000030465.19	ENSMUST00000150169.7	protein_coding	chr8:67790470-68062286
chr8	68212015	68212058	+	L2b	LINE	L2	chr8	68212026	68212028	-	ENSMUST00000212994.1,ENSMUSG00000030465.19	Psd3	ENSMUSG00000030465.19	ENSMUST00000212994.1	protein_coding	chr8:68120316-68212027
chr8	68298472	68301054	-	L1_Mus3	LINE	L1	chr8	68299068	68299070	+	ENSMUST00000213094.1,ENSMUSG00000110472.1	Gm45739	ENSMUSG00000110472.1	ENSMUST00000213094.1	processed_pseudogene	chr8:68299069-68299456
chr8	68456685	68457230	+	RMER16_Mm	LTR	ERVK	chr8	68457147	68457149	+	ENSMUST00000132076.1,ENSMUSG00000087489.1	Gm15656	ENSMUSG00000087489.1	ENSMUST00000132076.1	antisense	chr8:68457148-68458681
chr8	69044662	69044765	+	B3	SINE	B2	chr8	69044753	69044755	+	ENSMUST00000162457.2,ENSMUSG00000089995.2	Gm15716	ENSMUSG00000089995.2	ENSMUST00000162457.2	antisense	chr8:69044754-69063422
chr8	69103105	69103258	-	RMER10B	LTR	ERVL	chr8	69103127	69103129	+	ENSMUST00000129797.1,ENSMUSG00000006273.14	Atp6v1b2	ENSMUSG00000006273.14	ENSMUST00000129797.1	protein_coding	chr8:69103128-69108340
chr8	69184225	69184264	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	69184224	69184226	-	ENSMUST00000185176.7,ENSMUSG00000036306.13	Lzts1	ENSMUSG00000036306.13	ENSMUST00000185176.7	protein_coding	chr8:69132669-69184225
chr8	69226017	69227843	+	MurSatRep1	Unknown	Unknown	chr8	69226342	69226344	+	ENSMUST00000110216.1,ENSMUSG00000059897.5	Zfp930	ENSMUSG00000059897.5	ENSMUST00000110216.1	protein_coding	chr8:69226343-69228980
chr8	69300590	69301962	+	MurSatRep1	Unknown	Unknown	chr8	69300775	69300777	+	ENSMUST00000078257.6,ENSMUSG00000079038.3	D130040H23Rik	ENSMUSG00000079038.3	ENSMUST00000078257.6	protein_coding	chr8:69300776-69303162
chr8	69373936	69375718	-	MurSatRep1	Unknown	Unknown	chr8	69375438	69375440	-	ENSMUST00000072427.5,ENSMUSG00000110444.1	Gm10033	ENSMUSG00000110444.1	ENSMUST00000072427.5	transcribed_unprocessed_pseudogene	chr8:69371837-69375439
chr8	69419477	69419954	+	RMER13B	LTR	ERVK	chr8	69419496	69419498	+	ENSMUST00000212932.1,ENSMUSG00000110474.1	Gm45848	ENSMUSG00000110474.1	ENSMUST00000212932.1	lincRNA	chr8:69419497-69425233
chr8	69619230	69619738	-	MT2A	LTR	ERVL	chr8	69619351	69619353	-	ENSMUST00000074982.6,ENSMUSG00000060427.15	Zfp868	ENSMUSG00000060427.15	ENSMUST00000074982.6	protein_coding	chr8:69611414-69619352
chr8	69659257	69659681	+	MurSatRep1	Unknown	Unknown	chr8	69659262	69659264	+	ENSMUST00000169125.1,ENSMUSG00000091764.3	Zfp964	ENSMUSG00000091764.3	ENSMUST00000169125.1	protein_coding	chr8:69659263-69664170
chr8	69710659	69711051	-	MT2A	LTR	ERVL	chr8	69710723	69710725	-	ENSMUST00000080987.6,ENSMUSG00000054648.7	Zfp869	ENSMUSG00000054648.7	ENSMUST00000080987.6	protein_coding	chr8:69706332-69710724
chr8	69765384	69766984	-	MurSatRep1	Unknown	Unknown	chr8	69766678	69766680	-	ENSMUST00000126915.1,ENSMUSG00000092544.8	Gm20422	ENSMUSG00000092544.8	ENSMUST00000126915.1	protein_coding	chr8:69743184-69766679
chr8	69813166	69813313	-	B1_Mus1	SINE	Alu	chr8	69813264	69813266	+	ENSMUST00000154903.1,ENSMUSG00000036246.14	Gmip	ENSMUSG00000036246.14	ENSMUST00000154903.1	protein_coding	chr8:69813265-69814102
chr8	69848029	69848082	+	RLTR31D_MM	LTR	ERVK	chr8	69848038	69848040	+	ENSMUST00000132259.1,ENSMUSG00000031860.17	Pbx4	ENSMUSG00000031860.17	ENSMUST00000132259.1	protein_coding	chr8:69848039-69864977
chr8	69866050	69866200	+	(CA)n	Simple_repeat	Simple_repeat	chr8	69866110	69866112	+	ENSMUST00000156251.1,ENSMUSG00000031860.17	Pbx4	ENSMUSG00000031860.17	ENSMUST00000156251.1	protein_coding	chr8:69866111-69870638
chr8	69866224	69866393	+	B4A	SINE	B4	chr8	69866284	69866286	+	ENSMUST00000135952.1,ENSMUSG00000031860.17	Pbx4	ENSMUSG00000031860.17	ENSMUST00000135952.1	protein_coding	chr8:69866285-69872292
chr8	70034486	70034614	+	B1_Mus2	SINE	Alu	chr8	70034513	70034515	-	ENSMUST00000212596.1,ENSMUSG00000031858.16	Mau2	ENSMUSG00000031858.16	ENSMUST00000212596.1	protein_coding	chr8:70032064-70034514
chr8	70140221	70140300	+	ID4	SINE	ID	chr8	70140276	70140278	+	ENSMUST00000110139.1,ENSMUSG00000002345.18	Borcs8	ENSMUSG00000002345.18	ENSMUST00000110139.1	protein_coding	chr8:70140277-70147319
chr8	70212238	70212292	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	70212255	70212257	-	ENSMUST00000063788.7,ENSMUSG00000002346.16	Slc25a42	ENSMUSG00000002346.16	ENSMUST00000063788.7	protein_coding	chr8:70184340-70212256
chr8	70234604	70234631	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	70234616	70234618	+	ENSMUST00000145078.7,ENSMUSG00000036054.15	Sugp2	ENSMUSG00000036054.15	ENSMUST00000145078.7	protein_coding	chr8:70234617-70242651
chr8	70234604	70234631	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	70234622	70234624	+	ENSMUST00000136758.1,ENSMUSG00000036054.15	Sugp2	ENSMUSG00000036054.15	ENSMUST00000136758.1	protein_coding	chr8:70234623-70254763
chr8	70247910	70248191	-	B4A	SINE	B4	chr8	70248143	70248145	+	ENSMUST00000135640.1,ENSMUSG00000036054.15	Sugp2	ENSMUSG00000036054.15	ENSMUST00000135640.1	protein_coding	chr8:70248144-70251868
chr8	70273563	70273661	-	ORR1D1	LTR	ERVL-MaLR	chr8	70273591	70273593	+	ENSMUST00000129402.1,ENSMUSG00000036054.15	Sugp2	ENSMUSG00000036054.15	ENSMUST00000129402.1	protein_coding	chr8:70273592-70279914
chr8	70282969	70283078	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	70282998	70283000	+	ENSMUST00000110124.8,ENSMUSG00000003573.15	Homer3	ENSMUSG00000003573.15	ENSMUST00000110124.8	protein_coding	chr8:70282999-70294361
chr8	70282969	70283078	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	70283033	70283035	+	ENSMUST00000155711.1,ENSMUSG00000003573.15	Homer3	ENSMUSG00000003573.15	ENSMUST00000155711.1	protein_coding	chr8:70283034-70286302
chr8	70289077	70289215	-	B1_Mus1	SINE	Alu	chr8	70289173	70289175	+	ENSMUST00000135692.1,ENSMUSG00000003573.15	Homer3	ENSMUSG00000003573.15	ENSMUST00000135692.1	protein_coding	chr8:70289174-70291603
chr8	70402784	70402798	-	PB1	SINE	Alu	chr8	70402797	70402799	-	ENSMUST00000125273.1,ENSMUSG00000003575.13	Crtc1	ENSMUSG00000003575.13	ENSMUST00000125273.1	protein_coding	chr8:70397755-70402798
chr8	70439568	70439601	+	(TCC)n	Simple_repeat	Simple_repeat	chr8	70439578	70439580	-	ENSMUST00000076615.5,ENSMUSG00000003575.13	Crtc1	ENSMUSG00000003575.13	ENSMUST00000076615.5	protein_coding	chr8:70382355-70439579
chr8	70439568	70439601	+	(TCC)n	Simple_repeat	Simple_repeat	chr8	70439578	70439580	-	ENSMUST00000142769.7,ENSMUSG00000003575.13	Crtc1	ENSMUSG00000003575.13	ENSMUST00000142769.7	protein_coding	chr8:70382355-70439579
chr8	70439568	70439601	+	(TCC)n	Simple_repeat	Simple_repeat	chr8	70439574	70439576	-	ENSMUST00000125613.7,ENSMUSG00000003575.13	Crtc1	ENSMUSG00000003575.13	ENSMUST00000125613.7	protein_coding	chr8:70404849-70439575
chr8	70475819	70475951	+	B1F	SINE	Alu	chr8	70475897	70475899	-	ENSMUST00000209567.1,ENSMUSG00000055707.13	Klhl26	ENSMUSG00000055707.13	ENSMUST00000209567.1	protein_coding	chr8:70450680-70475898
chr8	70527769	70527797	+	GC_rich	Low_complexity	Low_complexity	chr8	70527782	70527784	-	ENSMUST00000132867.1,ENSMUSG00000055553.16	Kxd1	ENSMUSG00000055553.16	ENSMUST00000132867.1	protein_coding	chr8:70518411-70527783
chr8	70532101	70532147	+	(TG)n	Simple_repeat	Simple_repeat	chr8	70532120	70532122	+	ENSMUST00000134299.7,ENSMUSG00000019428.16	Fkbp8	ENSMUSG00000019428.16	ENSMUST00000134299.7	protein_coding	chr8:70532121-70534971
chr8	70532173	70532357	-	B4A	SINE	B4	chr8	70532183	70532185	+	ENSMUST00000126613.1,ENSMUSG00000019428.16	Fkbp8	ENSMUSG00000019428.16	ENSMUST00000126613.1	protein_coding	chr8:70532184-70534867
chr8	70539626	70539690	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	70539687	70539689	+	ENSMUST00000093454.7,ENSMUSG00000070002.7	Ell	ENSMUSG00000070002.7	ENSMUST00000093454.7	protein_coding	chr8:70539688-70592858
chr8	70597925	70597988	+	GC_rich	Low_complexity	Low_complexity	chr8	70597937	70597939	-	ENSMUST00000210305.1,ENSMUSG00000070003.7	Ssbp4	ENSMUSG00000070003.7	ENSMUST00000210305.1	protein_coding	chr8:70597512-70597938
chr8	70608756	70608895	-	ID_B1	SINE	B4	chr8	70608871	70608873	-	ENSMUST00000210369.1,ENSMUSG00000070003.7	Ssbp4	ENSMUSG00000070003.7	ENSMUST00000210369.1	protein_coding	chr8:70597491-70608872
chr8	70658818	70658963	+	B1F1	SINE	Alu	chr8	70658911	70658913	-	ENSMUST00000210459.1,ENSMUSG00000056204.8	Pgpep1	ENSMUSG00000056204.8	ENSMUST00000210459.1	protein_coding	chr8:70650585-70658912
chr8	70808419	70808463	+	T-rich	Low_complexity	Low_complexity	chr8	70808448	70808450	+	ENSMUST00000211936.1,ENSMUSG00000000791.9	Il12rb1	ENSMUSG00000000791.9	ENSMUST00000211936.1	protein_coding	chr8:70808449-70813923
chr8	70808419	70808463	+	T-rich	Low_complexity	Low_complexity	chr8	70808448	70808450	+	ENSMUST00000000808.7,ENSMUSG00000000791.9	Il12rb1	ENSMUSG00000000791.9	ENSMUST00000000808.7	protein_coding	chr8:70808449-70821424
chr8	70837730	70837852	-	B1_Mus1	SINE	Alu	chr8	70837739	70837741	-	ENSMUST00000212770.1,ENSMUSG00000002910.11	Arrdc2	ENSMUSG00000002910.11	ENSMUST00000212770.1	protein_coding	chr8:70836240-70837740
chr8	70931268	70931759	+	RLTR20D	LTR	ERVK	chr8	70931404	70931406	+	ENSMUST00000098653.2,ENSMUSG00000074252.2	Gm10654	ENSMUSG00000074252.2	ENSMUST00000098653.2	TEC	chr8:70931405-70933037
chr8	71042906	71043095	-	MurSatRep1	Unknown	Unknown	chr8	71043039	71043041	-	ENSMUST00000170101.1,ENSMUSG00000101854.2	1700026F02Rik	ENSMUSG00000101854.2	ENSMUST00000170101.1	lincRNA	chr8:71042645-71043040
chr8	71113247	71119456	-	L1Md_T	LINE	L1	chr8	71119341	71119343	+	ENSMUST00000184911.1,ENSMUSG00000098594.1	Gm27628	ENSMUSG00000098594.1	ENSMUST00000184911.1	miRNA	chr8:71119342-71119448
chr8	71381900	71381928	+	GC_rich	Low_complexity	Low_complexity	chr8	71381905	71381907	-	ENSMUST00000132630.1,ENSMUSG00000002393.14	Nr2f6	ENSMUSG00000002393.14	ENSMUST00000132630.1	protein_coding	chr8:71374123-71381906
chr8	71381952	71381994	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr8	71381959	71381961	-	ENSMUST00000002466.8,ENSMUSG00000002393.14	Nr2f6	ENSMUSG00000002393.14	ENSMUST00000002466.8	protein_coding	chr8:71374127-71381960
chr8	71390228	71390300	+	PB1D9	SINE	Alu	chr8	71390285	71390287	-	ENSMUST00000212516.1,ENSMUSG00000034911.8	Ushbp1	ENSMUSG00000034911.8	ENSMUST00000212516.1	protein_coding	chr8:71387050-71390286
chr8	71402220	71402244	+	(TTTA)n	Simple_repeat	Simple_repeat	chr8	71402221	71402223	+	ENSMUST00000212383.1,ENSMUSG00000031820.9	Babam1	ENSMUSG00000031820.9	ENSMUST00000212383.1	protein_coding	chr8:71402222-71403028
chr8	71458884	71458980	-	B1_Mur1	SINE	Alu	chr8	71458906	71458908	-	ENSMUST00000212321.1,ENSMUSG00000007950.9	Abhd8	ENSMUSG00000007950.9	ENSMUST00000212321.1	protein_coding	chr8:71457325-71458907
chr8	71469263	71469298	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	71469284	71469286	+	ENSMUST00000150984.1,ENSMUSG00000074247.10	Dda1	ENSMUSG00000074247.10	ENSMUST00000150984.1	protein_coding	chr8:71469285-71472615
chr8	71483678	71483777	+	ID_B1	SINE	B4	chr8	71483737	71483739	-	ENSMUST00000212768.1,ENSMUSG00000034863.9	Ano8	ENSMUSG00000034863.9	ENSMUST00000212768.1	protein_coding	chr8:71476843-71483738
chr8	71544728	71544865	+	B1_Mus1	SINE	Alu	chr8	71544858	71544860	+	ENSMUST00000212659.1,ENSMUSG00000031813.8	Mvb12a	ENSMUSG00000031813.8	ENSMUST00000212659.1	protein_coding	chr8:71544859-71545951
chr8	71599855	71599954	-	ID_B1	SINE	B4	chr8	71599910	71599912	+	ENSMUST00000132891.1,ENSMUSG00000043243.15	Fam129c	ENSMUSG00000043243.15	ENSMUST00000132891.1	protein_coding	chr8:71599911-71602234
chr8	71658487	71658560	+	(TCC)n	Simple_repeat	Simple_repeat	chr8	71658494	71658496	-	ENSMUST00000176426.1,ENSMUSG00000034799.16	Unc13a	ENSMUSG00000034799.16	ENSMUST00000176426.1	protein_coding	chr8:71653607-71658495
chr8	71677544	71677627	-	ID_B1	SINE	B4	chr8	71677550	71677552	+	ENSMUST00000110012.1,ENSMUSG00000031805.17	Jak3	ENSMUSG00000031805.17	ENSMUST00000110012.1	protein_coding	chr8:71677551-71688558
chr8	71721825	71721912	+	MIRb	SINE	MIR	chr8	71721864	71721866	-	ENSMUST00000126455.7,ENSMUSG00000070000.13	Fcho1	ENSMUSG00000070000.13	ENSMUST00000126455.7	protein_coding	chr8:71715862-71721865
chr8	71887208	71887397	+	MurSatRep1	Unknown	Unknown	chr8	71887263	71887265	+	ENSMUST00000034259.7,ENSMUSG00000056019.12	Zfp709	ENSMUSG00000056019.12	ENSMUST00000034259.7	protein_coding	chr8:71887264-71890912
chr8	71953041	71953584	+	LTRIS2	LTR	ERV1	chr8	71953446	71953448	+	ENSMUST00000151168.1,ENSMUSG00000052446.17	Zfp961	ENSMUSG00000052446.17	ENSMUST00000151168.1	protein_coding	chr8:71953447-71968176
chr8	72037641	72037699	+	U2	snRNA	snRNA	chr8	72037641	72037643	+	ENSMUST00000122661.1,ENSMUSG00000084610.1	Gm25052	ENSMUSG00000084610.1	ENSMUST00000122661.1	snRNA	chr8:72037642-72037799
chr8	72047175	72047734	-	RLTR20B5_MM	LTR	ERVK	chr8	72047427	72047429	+	ENSMUST00000211130.1,ENSMUSG00000110096.1	Gm45544	ENSMUSG00000110096.1	ENSMUST00000211130.1	unprocessed_pseudogene	chr8:72047428-72047515
chr8	72089419	72089978	-	RLTR20B5_MM	LTR	ERVK	chr8	72089667	72089669	+	ENSMUST00000209327.1,ENSMUSG00000109990.1	Gm45543	ENSMUSG00000109990.1	ENSMUST00000209327.1	unprocessed_pseudogene	chr8:72089668-72089755
chr8	72111228	72111311	+	5S	rRNA	rRNA	chr8	72111233	72111235	+	ENSMUST00000157835.1,ENSMUSG00000088460.1	Gm24747	ENSMUSG00000088460.1	ENSMUST00000157835.1	rRNA	chr8:72111234-72111320
chr8	72135215	72135287	+	GC_rich	Low_complexity	Low_complexity	chr8	72135258	72135260	+	ENSMUST00000003575.9,ENSMUSG00000031799.9	Tpm4	ENSMUSG00000031799.9	ENSMUST00000003575.9	protein_coding	chr8:72135259-72153142
chr8	72140779	72140850	+	(TG)n	Simple_repeat	Simple_repeat	chr8	72140819	72140821	-	ENSMUST00000181918.1,ENSMUSG00000097472.1	Gm26586	ENSMUSG00000097472.1	ENSMUST00000181918.1	antisense	chr8:72137389-72140820
chr8	72213636	72213780	-	B1_Mus2	SINE	Alu	chr8	72213635	72213637	-	ENSMUST00000109987.1,ENSMUSG00000079016.1	Gm11034	ENSMUSG00000079016.1	ENSMUST00000109987.1	protein_coding	chr8:72213494-72213636
chr8	72374221	72374450	+	L1MB3	LINE	L1	chr8	72374313	72374315	-	ENSMUST00000212257.1,ENSMUSG00000006276.10	Eps15l1	ENSMUSG00000006276.10	ENSMUST00000212257.1	protein_coding	chr8:72345967-72374314
chr8	72435122	72435228	+	PB1D10	SINE	Alu	chr8	72435155	72435157	-	ENSMUST00000109974.1,ENSMUSG00000019732.14	Calr3	ENSMUSG00000019732.14	ENSMUST00000109974.1	protein_coding	chr8:72424183-72435156
chr8	72541252	72541648	-	MTA_Mm	LTR	ERVL-MaLR	chr8	72541579	72541581	-	ENSMUST00000178138.1,ENSMUSG00000094041.1	Gm28019	ENSMUSG00000094041.1	ENSMUST00000178138.1	miRNA	chr8:72541480-72541580
chr8	72684294	72684441	-	B1_Mus1	SINE	Alu	chr8	72684313	72684315	+	ENSMUST00000175535.1,ENSMUSG00000093276.1	Gm26237	ENSMUSG00000093276.1	ENSMUST00000175535.1	miRNA	chr8:72684314-72684438
chr8	72765289	72765870	-	RLTR17	LTR	ERVK	chr8	72765480	72765482	+	ENSMUST00000211831.1,ENSMUSG00000110481.1	Gm45705	ENSMUSG00000110481.1	ENSMUST00000211831.1	TEC	chr8:72765481-72767614
chr8	72766713	72768974	-	MYSERV6-int	LTR	ERVK	chr8	72767615	72767617	-	ENSMUST00000213063.1,ENSMUSG00000110696.1	Gm45706	ENSMUSG00000110696.1	ENSMUST00000213063.1	TEC	chr8:72765481-72767616
chr8	73641191	73641702	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr8	73641504	73641506	-	ENSMUST00000102244.1,ENSMUSG00000076199.1	Gm23255	ENSMUSG00000076199.1	ENSMUST00000102244.1	miRNA	chr8:73641396-73641505
chr8	74093031	74095346	+	L1_Mur1	LINE	L1	chr8	74093683	74093685	-	ENSMUST00000211967.1,ENSMUSG00000110703.1	Gm45821	ENSMUSG00000110703.1	ENSMUST00000211967.1	lincRNA	chr8:74081645-74093684
chr8	74833859	74834210	-	RLTR10D2	LTR	ERVK	chr8	74833946	74833948	-	ENSMUST00000127757.7,ENSMUSG00000079011.9	Gm11033	ENSMUSG00000079011.9	ENSMUST00000127757.7	lincRNA	chr8:74590987-74833947
chr8	74833859	74834210	-	RLTR10D2	LTR	ERVK	chr8	74833936	74833938	-	ENSMUST00000156185.1,ENSMUSG00000079011.9	Gm11033	ENSMUSG00000079011.9	ENSMUST00000156185.1	lincRNA	chr8:74784169-74833937
chr8	74833859	74834210	-	RLTR10D2	LTR	ERVK	chr8	74833919	74833921	-	ENSMUST00000137218.1,ENSMUSG00000079011.9	Gm11033	ENSMUSG00000079011.9	ENSMUST00000137218.1	lincRNA	chr8:74827992-74833920
chr8	75176212	75181499	+	MERVL-int	LTR	ERVL	chr8	75176457	75176459	+	ENSMUST00000212196.1,ENSMUSG00000110693.1	Gm45899	ENSMUSG00000110693.1	ENSMUST00000212196.1	lincRNA	chr8:75176458-75177733
chr8	75201389	75201477	-	MIRb	SINE	MIR	chr8	75201438	75201440	+	ENSMUST00000212891.1,ENSMUSG00000110640.1	Gm45903	ENSMUSG00000110640.1	ENSMUST00000212891.1	lincRNA	chr8:75201439-75210042
chr8	76008223	76010096	+	L1_Mus4	LINE	L1	chr8	76010025	76010027	+	ENSMUST00000212661.1,ENSMUSG00000110603.1	Gm45741	ENSMUSG00000110603.1	ENSMUST00000212661.1	lincRNA	chr8:76010026-76011139
chr8	76274343	76274450	-	U6	snRNA	snRNA	chr8	76274449	76274451	-	ENSMUST00000082775.1,ENSMUSG00000064709.1	Gm22509	ENSMUSG00000064709.1	ENSMUST00000082775.1	snRNA	chr8:76274344-76274450
chr8	76414399	76419269	+	L1Md_T	LINE	L1	chr8	76415039	76415041	-	ENSMUST00000212103.1,ENSMUSG00000110485.1	Gm45740	ENSMUSG00000110485.1	ENSMUST00000212103.1	lincRNA	chr8:75992509-76415040
chr8	76899750	76899800	+	(CA)n	Simple_repeat	Simple_repeat	chr8	76899771	76899773	+	ENSMUST00000109913.8,ENSMUSG00000031618.13	Nr3c2	ENSMUSG00000031618.13	ENSMUST00000109913.8	protein_coding	chr8:76899772-77245012
chr8	77194694	77194861	+	U2	snRNA	snRNA	chr8	77194694	77194696	+	ENSMUST00000158317.1,ENSMUSG00000088942.1	Gm23260	ENSMUSG00000088942.1	ENSMUST00000158317.1	snRNA	chr8:77194695-77194866
chr8	77305511	77305553	+	L1VL4	LINE	L1	chr8	77305532	77305534	+	ENSMUST00000209302.1,ENSMUSG00000110410.1	4933421D24Rik	ENSMUSG00000110410.1	ENSMUST00000209302.1	antisense	chr8:77305533-77313299
chr8	77305532	77308802	+	L1VL4	LINE	L1	chr8	77305532	77305534	+	ENSMUST00000209302.1,ENSMUSG00000110410.1	4933421D24Rik	ENSMUSG00000110410.1	ENSMUST00000209302.1	antisense	chr8:77305533-77313299
chr8	77569513	77569602	-	U6	snRNA	snRNA	chr8	77569601	77569603	-	ENSMUST00000157125.1,ENSMUSG00000087750.1	Gm23468	ENSMUSG00000087750.1	ENSMUST00000157125.1	snRNA	chr8:77569495-77569602
chr8	77574207	77574393	+	MER21C	LTR	ERVL	chr8	77574218	77574220	+	ENSMUST00000209267.1,ENSMUSG00000109787.1	Gm45286	ENSMUSG00000109787.1	ENSMUST00000209267.1	TEC	chr8:77574219-77575568
chr8	78042898	78045157	-	L1_Mus2	LINE	L1	chr8	78044009	78044011	+	ENSMUST00000211010.1,ENSMUSG00000110382.1	Gm29895	ENSMUSG00000110382.1	ENSMUST00000211010.1	lincRNA	chr8:78044010-78055473
chr8	78042898	78045157	-	L1_Mus2	LINE	L1	chr8	78044009	78044011	+	ENSMUST00000209933.1,ENSMUSG00000110382.1	Gm29895	ENSMUSG00000110382.1	ENSMUST00000209933.1	lincRNA	chr8:78044010-78055473
chr8	78390929	78390994	+	ORR1E	LTR	ERVL-MaLR	chr8	78390981	78390983	+	ENSMUST00000124713.1,ENSMUSG00000037101.16	Ttc29	ENSMUSG00000037101.16	ENSMUST00000124713.1	protein_coding	chr8:78390982-78393774
chr8	79014363	79014470	-	U6	snRNA	snRNA	chr8	79014469	79014471	-	ENSMUST00000082992.1,ENSMUSG00000064926.1	Gm22044	ENSMUSG00000064926.1	ENSMUST00000082992.1	snRNA	chr8:79014364-79014470
chr8	79028437	79028507	+	A-rich	Low_complexity	Low_complexity	chr8	79028436	79028438	+	ENSMUST00000087927.10,ENSMUSG00000071064.13	Zfp827	ENSMUSG00000071064.13	ENSMUST00000087927.10	protein_coding	chr8:79028437-79071837
chr8	79028437	79028507	+	A-rich	Low_complexity	Low_complexity	chr8	79028436	79028438	+	ENSMUST00000098614.8,ENSMUSG00000071064.13	Zfp827	ENSMUSG00000071064.13	ENSMUST00000098614.8	protein_coding	chr8:79028437-79193743
chr8	79225606	79225968	-	MTEa	LTR	ERVL-MaLR	chr8	79225929	79225931	+	ENSMUST00000211572.1,ENSMUSG00000110388.1	Gm30329	ENSMUSG00000110388.1	ENSMUST00000211572.1	antisense	chr8:79225930-79233224
chr8	79404106	79404192	-	MIRb	SINE	MIR	chr8	79404147	79404149	+	ENSMUST00000211483.1,ENSMUSG00000109945.1	Gm45601	ENSMUSG00000109945.1	ENSMUST00000211483.1	lincRNA	chr8:79404148-79411216
chr8	79752190	79752772	+	Lx7	LINE	L1	chr8	79752412	79752414	-	ENSMUST00000211147.1,ENSMUSG00000110202.1	Gm45435	ENSMUSG00000110202.1	ENSMUST00000211147.1	antisense	chr8:79747267-79752413
chr8	79759757	79766188	-	L1Md_T	LINE	L1	chr8	79765211	79765213	+	ENSMUST00000210485.1,ENSMUSG00000036977.8	Anapc10	ENSMUSG00000036977.8	ENSMUST00000210485.1	protein_coding	chr8:79765212-79775342
chr8	79861523	79867143	-	L1_Mur2	LINE	L1	chr8	79864078	79864080	-	ENSMUST00000210391.1,ENSMUSG00000110188.1	Gm45432	ENSMUSG00000110188.1	ENSMUST00000210391.1	processed_pseudogene	chr8:79863664-79864079
chr8	80513643	80521368	+	L1Md_T	LINE	L1	chr8	80514472	80514474	-	ENSMUST00000142188.1,ENSMUSG00000086912.3	4930505O20Rik	ENSMUSG00000086912.3	ENSMUST00000142188.1	antisense	chr8:80511842-80514473
chr8	80710747	80710923	+	B3	SINE	B2	chr8	80710860	80710862	-	ENSMUST00000150277.1,ENSMUSG00000031715.14	Smarca5	ENSMUSG00000031715.14	ENSMUST00000150277.1	protein_coding	chr8:80709738-80710861
chr8	81061245	81061350	+	(GA)n	Simple_repeat	Simple_repeat	chr8	81061333	81061335	+	ENSMUST00000210771.1,ENSMUSG00000109980.1	Gm45538	ENSMUSG00000109980.1	ENSMUST00000210771.1	lincRNA	chr8:81061334-81069803
chr8	81342541	81342571	+	GC_rich	Low_complexity	Low_complexity	chr8	81342555	81342557	+	ENSMUST00000172167.8,ENSMUSG00000037940.17	Inpp4b	ENSMUSG00000037940.17	ENSMUST00000172167.8	protein_coding	chr8:81342556-81745902
chr8	81342541	81342571	+	GC_rich	Low_complexity	Low_complexity	chr8	81342557	81342559	+	ENSMUST00000213285.1,ENSMUSG00000037940.17	Inpp4b	ENSMUSG00000037940.17	ENSMUST00000213285.1	protein_coding	chr8:81342558-82069002
chr8	81342541	81342571	+	GC_rich	Low_complexity	Low_complexity	chr8	81342561	81342563	+	ENSMUST00000217122.1,ENSMUSG00000037940.17	Inpp4b	ENSMUSG00000037940.17	ENSMUST00000217122.1	protein_coding	chr8:81342562-82122556
chr8	81342541	81342571	+	GC_rich	Low_complexity	Low_complexity	chr8	81342561	81342563	+	ENSMUST00000169387.9,ENSMUSG00000037940.17	Inpp4b	ENSMUSG00000037940.17	ENSMUST00000169387.9	protein_coding	chr8:81342562-82122788
chr8	81342541	81342571	+	GC_rich	Low_complexity	Low_complexity	chr8	81342561	81342563	+	ENSMUST00000215332.1,ENSMUSG00000037940.17	Inpp4b	ENSMUSG00000037940.17	ENSMUST00000215332.1	protein_coding	chr8:81342562-82125036
chr8	82152580	82152932	-	RLTR25B	LTR	ERVK	chr8	82152781	82152783	-	ENSMUST00000158522.1,ENSMUSG00000089147.1	Gm25267	ENSMUSG00000089147.1	ENSMUST00000158522.1	snRNA	chr8:82152720-82152782
chr8	82207368	82207460	+	(GA)n	Simple_repeat	Simple_repeat	chr8	82207385	82207387	-	ENSMUST00000210654.1,ENSMUSG00000110045.1	Gm38590	ENSMUSG00000110045.1	ENSMUST00000210654.1	lincRNA	chr8:82184799-82207386
chr8	82207460	82207626	-	ORR1C1	LTR	ERVL-MaLR	chr8	82207534	82207536	-	ENSMUST00000209515.1,ENSMUSG00000110045.1	Gm38590	ENSMUSG00000110045.1	ENSMUST00000209515.1	lincRNA	chr8:82189108-82207535
chr8	82770938	82771308	+	MTD	LTR	ERVL-MaLR	chr8	82771038	82771040	-	ENSMUST00000209601.1,ENSMUSG00000031711.7	Zfp330	ENSMUSG00000031711.7	ENSMUST00000209601.1	protein_coding	chr8:82763621-82771039
chr8	82802985	82808156	+	L1Md_T	LINE	L1	chr8	82803360	82803362	-	ENSMUST00000209358.1,ENSMUSG00000109643.1	Gm31545	ENSMUSG00000109643.1	ENSMUST00000209358.1	lincRNA	chr8:82796146-82803361
chr8	82863303	82863394	+	(CA)n	Simple_repeat	Simple_repeat	chr8	82863355	82863357	+	ENSMUST00000078525.6,ENSMUSG00000047747.10	Rnf150	ENSMUSG00000047747.10	ENSMUST00000078525.6	protein_coding	chr8:82863356-83091268
chr8	83675517	83675665	+	B1_Mus1	SINE	Alu	chr8	83675566	83675568	-	ENSMUST00000128523.7,ENSMUSG00000057672.16	Pkn1	ENSMUSG00000057672.16	ENSMUST00000128523.7	protein_coding	chr8:83670127-83675567
chr8	83681443	83681623	-	ID_B1	SINE	B4	chr8	83681588	83681590	-	ENSMUST00000133195.1,ENSMUSG00000057672.16	Pkn1	ENSMUSG00000057672.16	ENSMUST00000133195.1	protein_coding	chr8:83677784-83681589
chr8	83681584	83681689	-	PB1D9	SINE	Alu	chr8	83681588	83681590	-	ENSMUST00000133195.1,ENSMUSG00000057672.16	Pkn1	ENSMUSG00000057672.16	ENSMUST00000133195.1	protein_coding	chr8:83677784-83681589
chr8	83752917	83753159	+	7SK	RNA	RNA	chr8	83752917	83752919	+	ENSMUST00000122733.1,ENSMUSG00000084682.1	Gm22024	ENSMUSG00000084682.1	ENSMUST00000122733.1	misc_RNA	chr8:83752918-83753204
chr8	84005538	84005684	-	B1_Mm	SINE	Alu	chr8	84005627	84005629	+	ENSMUST00000184463.1,ENSMUSG00000098823.1	Mir8111	ENSMUSG00000098823.1	ENSMUST00000184463.1	miRNA	chr8:84005628-84005764
chr8	84125946	84125997	+	(TG)n	Simple_repeat	Simple_repeat	chr8	84125988	84125990	+	ENSMUST00000093380.4,ENSMUSG00000012889.8	Podnl1	ENSMUSG00000012889.8	ENSMUST00000093380.4	protein_coding	chr8:84125989-84132527
chr8	84156471	84156990	+	MT2_Mm	LTR	ERVL	chr8	84156756	84156758	+	ENSMUST00000116684.1,ENSMUSG00000080334.1	Gm25110	ENSMUSG00000080334.1	ENSMUST00000116684.1	miRNA	chr8:84156757-84156877
chr8	84200851	84200883	+	GC_rich	Low_complexity	Low_complexity	chr8	84200868	84200870	+	ENSMUST00000193908.1,ENSMUSG00000103593.1	Gm37352	ENSMUSG00000103593.1	ENSMUST00000193908.1	TEC	chr8:84200869-84203049
chr8	84262125	84262222	+	PB1D10	SINE	Alu	chr8	84262144	84262146	-	ENSMUST00000166285.1,ENSMUSG00000004994.12	Ccdc130	ENSMUSG00000004994.12	ENSMUST00000166285.1	protein_coding	chr8:84260396-84262145
chr8	84388229	84388540	-	L2a	LINE	L2	chr8	84388439	84388441	+	ENSMUST00000135382.1,ENSMUSG00000034656.17	Cacna1a	ENSMUSG00000034656.17	ENSMUST00000135382.1	protein_coding	chr8:84388440-84519039
chr8	84774299	84774479	+	(GA)n	Simple_repeat	Simple_repeat	chr8	84774368	84774370	-	ENSMUST00000109762.7,ENSMUSG00000001911.16	Nfix	ENSMUSG00000001911.16	ENSMUST00000109762.7	protein_coding	chr8:84708626-84774369
chr8	84800133	84800181	+	GC_rich	Low_complexity	Low_complexity	chr8	84800139	84800141	-	ENSMUST00000076715.12,ENSMUSG00000001911.16	Nfix	ENSMUSG00000001911.16	ENSMUST00000076715.12	protein_coding	chr8:84708614-84800140
chr8	84800215	84800345	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	84800343	84800345	-	ENSMUST00000099070.9,ENSMUSG00000001911.16	Nfix	ENSMUSG00000001911.16	ENSMUST00000099070.9	protein_coding	chr8:84708616-84800344
chr8	84831514	84831658	-	B1_Mur4	SINE	Alu	chr8	84831521	84831523	+	ENSMUST00000036734.5,ENSMUSG00000033751.5	Gadd45gip1	ENSMUSG00000033751.5	ENSMUST00000036734.5	protein_coding	chr8:84831522-84835482
chr8	84924108	84924251	-	MIRc	SINE	MIR	chr8	84924113	84924115	-	ENSMUST00000153000.1,ENSMUSG00000053693.16	Mast1	ENSMUSG00000053693.16	ENSMUST00000153000.1	protein_coding	chr8:84911906-84924114
chr8	84937306	84937344	+	(CAG)n	Simple_repeat	Simple_repeat	chr8	84937343	84937345	-	ENSMUST00000128356.1,ENSMUSG00000053693.16	Mast1	ENSMUSG00000053693.16	ENSMUST00000128356.1	protein_coding	chr8:84934924-84937344
chr8	84951178	84951337	+	RSINE1	SINE	B4	chr8	84951180	84951182	+	ENSMUST00000152378.2,ENSMUSG00000048617.16	Rtbdn	ENSMUSG00000048617.16	ENSMUST00000152378.2	protein_coding	chr8:84951181-84956511
chr8	85084274	85084336	-	ID4	SINE	ID	chr8	85084287	85084289	+	ENSMUST00000211379.1,ENSMUSG00000005142.10	Man2b1	ENSMUSG00000005142.10	ENSMUST00000211379.1	protein_coding	chr8:85084288-85089750
chr8	85086322	85086507	+	B2_Mm2	SINE	B2	chr8	85086457	85086459	+	ENSMUST00000211223.1,ENSMUSG00000005142.10	Man2b1	ENSMUSG00000005142.10	ENSMUST00000211223.1	protein_coding	chr8:85086458-85089034
chr8	85111863	85112078	-	LSU-rRNA_Hsa	rRNA	rRNA	chr8	85112067	85112069	-	ENSMUST00000158588.1,ENSMUSG00000089213.1	Gm23388	ENSMUSG00000089213.1	ENSMUST00000158588.1	miRNA	chr8:85112012-85112068
chr8	85122305	85122734	-	MYSERV6-int	LTR	ERVK	chr8	85122727	85122729	+	ENSMUST00000210385.1,ENSMUSG00000110219.1	Gm45317	ENSMUSG00000110219.1	ENSMUST00000210385.1	processed_pseudogene	chr8:85122728-85122950
chr8	85132260	85132938	-	RLTR19B	LTR	ERVK	chr8	85132288	85132290	-	ENSMUST00000209823.1,ENSMUSG00000110386.1	Gm42031	ENSMUSG00000110386.1	ENSMUST00000209823.1	lincRNA	chr8:85125872-85132289
chr8	85151888	85152549	-	RMER13A2	LTR	ERVK	chr8	85151923	85151925	+	ENSMUST00000211617.1,ENSMUSG00000062687.6	Cks1brt	ENSMUSG00000062687.6	ENSMUST00000211617.1	protein_coding	chr8:85151924-85173622
chr8	85170573	85171524	+	RLTR18-int	LTR	ERVK	chr8	85171321	85171323	+	ENSMUST00000076896.5,ENSMUSG00000062687.6	Cks1brt	ENSMUSG00000062687.6	ENSMUST00000076896.5	protein_coding	chr8:85171322-85173622
chr8	85274254	85274526	+	Lx8	LINE	L1	chr8	85274502	85274504	-	ENSMUST00000209277.1,ENSMUSG00000031696.9	Vps35	ENSMUSG00000031696.9	ENSMUST00000209277.1	protein_coding	chr8:85269502-85274503
chr8	85315140	85315229	+	U6	snRNA	snRNA	chr8	85315139	85315141	+	ENSMUST00000157719.1,ENSMUSG00000088344.1	Gm22336	ENSMUSG00000088344.1	ENSMUST00000157719.1	snRNA	chr8:85315140-85315246
chr8	85339169	85339495	+	ORR1A0	LTR	ERVL-MaLR	chr8	85339342	85339344	+	ENSMUST00000151550.1,ENSMUSG00000084895.1	AA672651	ENSMUSG00000084895.1	ENSMUST00000151550.1	antisense	chr8:85339343-85340272
chr8	85599009	85600182	+	MMERGLN-int	LTR	ERV1	chr8	85599831	85599833	+	ENSMUST00000210575.1,ENSMUSG00000110341.1	Gm45424	ENSMUSG00000110341.1	ENSMUST00000210575.1	TEC	chr8:85599832-85603131
chr8	85690833	85691185	-	Lx5b	LINE	L1	chr8	85690972	85690974	-	ENSMUST00000109686.3,ENSMUSG00000036902.11	Neto2	ENSMUSG00000036902.11	ENSMUST00000109686.3	protein_coding	chr8:85636588-85690973
chr8	85690833	85691185	-	Lx5b	LINE	L1	chr8	85691008	85691010	-	ENSMUST00000209259.1,ENSMUSG00000036902.11	Neto2	ENSMUSG00000036902.11	ENSMUST00000209259.1	protein_coding	chr8:85637089-85691009
chr8	85690833	85691185	-	Lx5b	LINE	L1	chr8	85690972	85690974	-	ENSMUST00000215046.1,ENSMUSG00000036902.11	Neto2	ENSMUSG00000036902.11	ENSMUST00000215046.1	protein_coding	chr8:85640536-85690973
chr8	85840970	85840991	+	GC_rich	Low_complexity	Low_complexity	chr8	85840990	85840992	+	ENSMUST00000160611.7,ENSMUSG00000036879.15	Phkb	ENSMUSG00000036879.15	ENSMUST00000160611.7	protein_coding	chr8:85840991-85937046
chr8	86292500	86292598	+	U6	snRNA	snRNA	chr8	86292500	86292502	+	ENSMUST00000083803.1,ENSMUSG00000065737.1	Gm24490	ENSMUSG00000065737.1	ENSMUST00000083803.1	snRNA	chr8:86292501-86292598
chr8	86623991	86624069	+	G-rich	Low_complexity	Low_complexity	chr8	86624042	86624044	+	ENSMUST00000034141.15,ENSMUSG00000047866.18	Lonp2	ENSMUSG00000047866.18	ENSMUST00000034141.15	protein_coding	chr8:86624043-86716631
chr8	86623991	86624069	+	G-rich	Low_complexity	Low_complexity	chr8	86624042	86624044	+	ENSMUST00000155433.7,ENSMUSG00000047866.18	Lonp2	ENSMUSG00000047866.18	ENSMUST00000155433.7	protein_coding	chr8:86624043-86723873
chr8	86658372	86660397	-	L1_Mus3	LINE	L1	chr8	86660034	86660036	-	ENSMUST00000120728.1,ENSMUSG00000082484.1	Gm16177	ENSMUSG00000082484.1	ENSMUST00000120728.1	processed_pseudogene	chr8:86659318-86660035
chr8	86671235	86671343	-	U6	snRNA	snRNA	chr8	86671342	86671344	-	ENSMUST00000082690.1,ENSMUSG00000064624.1	Gm22305	ENSMUSG00000064624.1	ENSMUST00000082690.1	snRNA	chr8:86671236-86671343
chr8	86885198	86885265	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	86885257	86885259	-	ENSMUST00000034074.7,ENSMUSG00000031652.11	N4bp1	ENSMUSG00000031652.11	ENSMUST00000034074.7	protein_coding	chr8:86841139-86885258
chr8	86885618	86885745	+	B1F	SINE	Alu	chr8	86885687	86885689	+	ENSMUST00000184161.1,ENSMUSG00000098434.1	2010110E17Rik	ENSMUSG00000098434.1	ENSMUST00000184161.1	lincRNA	chr8:86885688-86886566
chr8	87387526	87388158	+	RMER19A	LTR	ERVK	chr8	87387550	87387552	-	ENSMUST00000195652.1,ENSMUSG00000098391.2	Gm27208	ENSMUSG00000098391.2	ENSMUST00000195652.1	processed_transcript	chr8:87386447-87387551
chr8	87458098	87458707	+	RMER19C	LTR	ERVK	chr8	87458443	87458445	+	ENSMUST00000184406.1,ENSMUSG00000098360.1	4930535O05Rik	ENSMUSG00000098360.1	ENSMUST00000184406.1	lincRNA	chr8:87458444-87459435
chr8	87495369	87495560	+	L2b	LINE	L2	chr8	87495461	87495463	-	ENSMUST00000183294.1,ENSMUSG00000097992.1	Gm27016	ENSMUSG00000097992.1	ENSMUST00000183294.1	lincRNA	chr8:87476055-87495462
chr8	87501104	87501239	+	MIR3	SINE	MIR	chr8	87501230	87501232	-	ENSMUST00000182952.1,ENSMUSG00000098086.1	1700120C18Rik	ENSMUSG00000098086.1	ENSMUST00000182952.1	lincRNA	chr8:87500049-87501231
chr8	87636657	87636897	+	7SK	RNA	RNA	chr8	87636656	87636658	+	ENSMUST00000158676.1,ENSMUSG00000089301.1	Gm24841	ENSMUSG00000089301.1	ENSMUST00000158676.1	misc_RNA	chr8:87636657-87637013
chr8	87959571	87959595	+	(A)n	Simple_repeat	Simple_repeat	chr8	87959594	87959596	-	ENSMUST00000109655.8,ENSMUSG00000045333.15	Zfp423	ENSMUSG00000045333.15	ENSMUST00000109655.8	protein_coding	chr8:87661810-87959595
chr8	88070729	88071090	-	MTD	LTR	ERVL-MaLR	chr8	88070809	88070811	-	ENSMUST00000212350.1,ENSMUSG00000110719.1	Gm2716	ENSMUSG00000110719.1	ENSMUST00000212350.1	unitary_pseudogene	chr8:88051511-88070810
chr8	88138181	88138216	+	GC_rich	Low_complexity	Low_complexity	chr8	88138205	88138207	+	ENSMUST00000184847.1,ENSMUSG00000099080.1	Mir7071	ENSMUSG00000099080.1	ENSMUST00000184847.1	miRNA	chr8:88138206-88138274
chr8	88164299	88164813	-	RMER15	LTR	ERVL	chr8	88164481	88164483	+	ENSMUST00000137452.1,ENSMUSG00000031657.16	Heatr3	ENSMUSG00000031657.16	ENSMUST00000137452.1	protein_coding	chr8:88164482-88167045
chr8	88245043	88245317	-	L1Md_A	LINE	L1	chr8	88245284	88245286	+	ENSMUST00000125043.1,ENSMUSG00000036779.12	Tent4b	ENSMUSG00000036779.12	ENSMUST00000125043.1	protein_coding	chr8:88245285-88249211
chr8	88521308	88521354	+	GC_rich	Low_complexity	Low_complexity	chr8	88521353	88521355	+	ENSMUST00000034086.12,ENSMUSG00000031661.12	Nkd1	ENSMUSG00000031661.12	ENSMUST00000034086.12	protein_coding	chr8:88521354-88593618
chr8	88735078	88735149	+	ID4	SINE	ID	chr8	88735110	88735112	+	ENSMUST00000211671.1,ENSMUSG00000036712.15	Cyld	ENSMUSG00000036712.15	ENSMUST00000211671.1	protein_coding	chr8:88735111-88738206
chr8	89589434	89589541	-	U6	snRNA	snRNA	chr8	89589540	89589542	-	ENSMUST00000082824.1,ENSMUSG00000064758.1	Gm26331	ENSMUSG00000064758.1	ENSMUST00000082824.1	snRNA	chr8:89589435-89589541
chr8	90762245	90762757	-	RLTR20D	LTR	ERVK	chr8	90762595	90762597	-	ENSMUST00000211762.1,ENSMUSG00000110212.1	Gm35963	ENSMUSG00000110212.1	ENSMUST00000211762.1	lincRNA	chr8:90759463-90762596
chr8	90790945	90791073	+	RMER15	LTR	ERVL	chr8	90790946	90790948	-	ENSMUST00000198683.1,ENSMUSG00000105321.1	Gm44382	ENSMUSG00000105321.1	ENSMUST00000198683.1	miRNA	chr8:90790826-90790947
chr8	90892961	90893170	+	B3	SINE	B2	chr8	90893154	90893156	+	ENSMUST00000211364.1,ENSMUSG00000109863.1	Gm45643	ENSMUSG00000109863.1	ENSMUST00000211364.1	TEC	chr8:90893155-90894638
chr8	91055248	91055510	+	MLT1C	LTR	ERVL-MaLR	chr8	91055263	91055265	+	ENSMUST00000210196.1,ENSMUSG00000110377.1	Gm45363	ENSMUSG00000110377.1	ENSMUST00000210196.1	TEC	chr8:91055264-91056557
chr8	91112115	91112248	-	L1M4b	LINE	L1	chr8	91112242	91112244	+	ENSMUST00000147361.7,ENSMUSG00000031666.15	Rbl2	ENSMUSG00000031666.15	ENSMUST00000147361.7	protein_coding	chr8:91112243-91115826
chr8	91113543	91113674	-	B1F1	SINE	Alu	chr8	91113653	91113655	+	ENSMUST00000130336.1,ENSMUSG00000031666.15	Rbl2	ENSMUSG00000031666.15	ENSMUST00000130336.1	protein_coding	chr8:91113654-91115766
chr8	91133759	91133802	+	GC_rich	Low_complexity	Low_complexity	chr8	91133771	91133773	-	ENSMUST00000209444.1,ENSMUSG00000031667.16	Aktip	ENSMUSG00000031667.16	ENSMUST00000209444.1	protein_coding	chr8:91129683-91133772
chr8	91152202	91152349	+	(TCC)n	Simple_repeat	Simple_repeat	chr8	91152206	91152208	+	ENSMUST00000210399.1,ENSMUSG00000110189.1	Gm45665	ENSMUSG00000110189.1	ENSMUST00000210399.1	processed_pseudogene	chr8:91152207-91152374
chr8	91184984	91185183	-	7SK	RNA	RNA	chr8	91185182	91185184	-	ENSMUST00000158523.1,ENSMUSG00000089148.1	Gm23408	ENSMUSG00000089148.1	ENSMUST00000158523.1	misc_RNA	chr8:91184919-91185183
chr8	91210565	91210842	-	LTR16E2	LTR	ERVL	chr8	91210569	91210571	+	ENSMUST00000211546.1,ENSMUSG00000110089.1	Gm36243	ENSMUSG00000110089.1	ENSMUST00000211546.1	antisense	chr8:91210570-91224667
chr8	91260456	91260551	+	L1M4a2	LINE	L1	chr8	91260534	91260536	-	ENSMUST00000210054.1,ENSMUSG00000109828.1	Gm45662	ENSMUSG00000109828.1	ENSMUST00000210054.1	TEC	chr8:91258438-91260535
chr8	91281466	91281667	-	ID_B1	SINE	B4	chr8	91281505	91281507	-	ENSMUST00000211185.1,ENSMUSG00000033282.14	Rpgrip1l	ENSMUSG00000033282.14	ENSMUST00000211185.1	protein_coding	chr8:91276702-91281506
chr8	91450283	91450364	+	L1M3e	LINE	L1	chr8	91450305	91450307	+	ENSMUST00000211232.1,ENSMUSG00000110079.1	Gm45292	ENSMUSG00000110079.1	ENSMUST00000211232.1	TEC	chr8:91450306-91452512
chr8	91794223	91794292	+	(TC)n	Simple_repeat	Simple_repeat	chr8	91794247	91794249	-	ENSMUST00000210339.1,ENSMUSG00000110304.1	Gm36380	ENSMUSG00000110304.1	ENSMUST00000210339.1	lincRNA	chr8:91788508-91794248
chr8	91800306	91800446	+	CT-rich	Low_complexity	Low_complexity	chr8	91800414	91800416	+	ENSMUST00000133337.7,ENSMUSG00000046413.14	Irx3os	ENSMUSG00000046413.14	ENSMUST00000133337.7	antisense	chr8:91800415-91807539
chr8	91800306	91800446	+	CT-rich	Low_complexity	Low_complexity	chr8	91800414	91800416	+	ENSMUST00000062522.8,ENSMUSG00000046413.14	Irx3os	ENSMUSG00000046413.14	ENSMUST00000062522.8	antisense	chr8:91800415-91807539
chr8	92039916	92040020	+	U6	snRNA	snRNA	chr8	92039916	92039918	+	ENSMUST00000083702.1,ENSMUSG00000065636.1	Gm24254	ENSMUSG00000065636.1	ENSMUST00000083702.1	snRNA	chr8:92039917-92040020
chr8	92232984	92233129	+	B1_Mus2	SINE	Alu	chr8	92233124	92233126	+	ENSMUST00000211118.1,ENSMUSG00000110134.1	Gm45334	ENSMUSG00000110134.1	ENSMUST00000211118.1	lincRNA	chr8:92233125-92247959
chr8	92339125	92339508	+	L1Md_F2	LINE	L1	chr8	92339249	92339251	-	ENSMUST00000178584.1,ENSMUSG00000095651.1	Gm21817	ENSMUSG00000095651.1	ENSMUST00000178584.1	lincRNA	chr8:92336668-92339250
chr8	92357592	92357748	+	G-rich	Low_complexity	Low_complexity	chr8	92357624	92357626	+	ENSMUST00000210246.1,ENSMUSG00000031737.11	Irx5	ENSMUSG00000031737.11	ENSMUST00000210246.1	protein_coding	chr8:92357625-92376286
chr8	92465707	92465774	+	RMER12C	LTR	ERVK	chr8	92465766	92465768	+	ENSMUST00000210010.1,ENSMUSG00000110290.1	Gm45336	ENSMUSG00000110290.1	ENSMUST00000210010.1	lincRNA	chr8:92465767-92469665
chr8	92674212	92674330	+	CT-rich	Low_complexity	Low_complexity	chr8	92674287	92674289	+	ENSMUST00000034185.12,ENSMUSG00000031738.14	Irx6	ENSMUSG00000031738.14	ENSMUST00000034185.12	protein_coding	chr8:92674288-92680956
chr8	92913174	92913401	+	(CATA)n	Simple_repeat	Simple_repeat	chr8	92913188	92913190	-	ENSMUST00000116963.1,ENSMUSG00000080613.1	Gm22151	ENSMUSG00000080613.1	ENSMUST00000116963.1	miRNA	chr8:92913132-92913189
chr8	93169971	93170003	+	AT_rich	Low_complexity	Low_complexity	chr8	93169974	93169976	-	ENSMUST00000143256.1,ENSMUSG00000056973.6	Ces1d	ENSMUSG00000056973.6	ENSMUST00000143256.1	protein_coding	chr8:93166303-93169975
chr8	93191210	93191405	+	URR1A	DNA	hAT-Charlie	chr8	93191357	93191359	-	ENSMUST00000212413.1,ENSMUSG00000110496.1	Gm45909	ENSMUSG00000110496.1	ENSMUST00000212413.1	TEC	chr8:93190328-93191358
chr8	93251171	93251183	+	MIRc	SINE	MIR	chr8	93251174	93251176	-	ENSMUST00000212886.1,ENSMUSG00000110659.1	Gm45727	ENSMUSG00000110659.1	ENSMUST00000212886.1	unprocessed_pseudogene	chr8:93238653-93251175
chr8	93423258	93423594	-	ORR1B1	LTR	ERVL-MaLR	chr8	93423540	93423542	+	ENSMUST00000212921.1,ENSMUSG00000110718.1	Gm45765	ENSMUSG00000110718.1	ENSMUST00000212921.1	antisense	chr8:93423541-93430485
chr8	93427627	93427664	+	(CCA)n	Simple_repeat	Simple_repeat	chr8	93427627	93427629	-	ENSMUST00000212816.1,ENSMUSG00000110670.1	Gm30132	ENSMUSG00000110670.1	ENSMUST00000212816.1	lincRNA	chr8:93415537-93427628
chr8	93505742	93511032	+	L1Md_Gf	LINE	L1	chr8	93506767	93506769	-	ENSMUST00000080391.13,ENSMUSG00000058019.13	Ces5a	ENSMUSG00000058019.13	ENSMUST00000080391.13	protein_coding	chr8:93499213-93506768
chr8	93513451	93513597	+	L2a	LINE	L2	chr8	93513532	93513534	-	ENSMUST00000212690.1,ENSMUSG00000058019.13	Ces5a	ENSMUSG00000058019.13	ENSMUST00000212690.1	protein_coding	chr8:93499379-93513533
chr8	93513451	93513597	+	L2a	LINE	L2	chr8	93513558	93513560	-	ENSMUST00000212407.1,ENSMUSG00000058019.13	Ces5a	ENSMUSG00000058019.13	ENSMUST00000212407.1	protein_coding	chr8:93501418-93513559
chr8	93719944	93720061	+	(TC)n	Simple_repeat	Simple_repeat	chr8	93719974	93719976	-	ENSMUST00000212801.1,ENSMUSG00000110713.1	Gm30606	ENSMUSG00000110713.1	ENSMUST00000212801.1	lincRNA	chr8:93707015-93719975
chr8	93749811	93749855	+	(CA)n	Simple_repeat	Simple_repeat	chr8	93749851	93749853	-	ENSMUST00000213021.1,ENSMUSG00000110672.1	Gm45786	ENSMUSG00000110672.1	ENSMUST00000213021.1	TEC	chr8:93747575-93749852
chr8	93810236	93810463	+	GC_rich	Low_complexity	Low_complexity	chr8	93810289	93810291	-	ENSMUST00000181864.2,ENSMUSG00000097520.2	4930488L21Rik	ENSMUSG00000097520.2	ENSMUST00000181864.2	antisense	chr8:93750147-93810290
chr8	93810525	93810657	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr8	93810635	93810637	+	ENSMUST00000125695.2,ENSMUSG00000031748.16	Gnao1	ENSMUSG00000031748.16	ENSMUST00000125695.2	protein_coding	chr8:93810636-93811770
chr8	93933609	93934003	-	MTA_Mm	LTR	ERVL-MaLR	chr8	93933935	93933937	-	ENSMUST00000175264.1,ENSMUSG00000093005.1	Gm24159	ENSMUSG00000093005.1	ENSMUST00000175264.1	miRNA	chr8:93933835-93933936
chr8	94048664	94048810	-	B1_Mus2	SINE	Alu	chr8	94048780	94048782	+	ENSMUST00000211865.1,ENSMUSG00000110499.1	Gm45873	ENSMUSG00000110499.1	ENSMUST00000211865.1	TEC	chr8:94048781-94050695
chr8	94070168	94070249	+	B1F	SINE	Alu	chr8	94070212	94070214	-	ENSMUST00000170208.1,ENSMUSG00000031755.6	Bbs2	ENSMUSG00000031755.6	ENSMUST00000170208.1	protein_coding	chr8:94068144-94070213
chr8	94079676	94079776	-	PB1D10	SINE	Alu	chr8	94079755	94079757	-	ENSMUST00000172347.1,ENSMUSG00000031755.6	Bbs2	ENSMUSG00000031755.6	ENSMUST00000172347.1	protein_coding	chr8:94075140-94079756
chr8	94652199	94652390	-	B2_Mm1a	SINE	B2	chr8	94652376	94652378	+	ENSMUST00000211941.1,ENSMUSG00000050079.10	Rspry1	ENSMUSG00000050079.10	ENSMUST00000211941.1	protein_coding	chr8:94652377-94656533
chr8	94669917	94670059	-	B1_Mur4	SINE	Alu	chr8	94670042	94670044	+	ENSMUST00000212254.1,ENSMUSG00000031776.17	Arl2bp	ENSMUSG00000031776.17	ENSMUST00000212254.1	protein_coding	chr8:94670043-94673284
chr8	94679895	94680217	+	ORR1A2	LTR	ERVL-MaLR	chr8	94680081	94680083	-	ENSMUST00000212555.1,ENSMUSG00000031775.5	Pllp	ENSMUSG00000031775.5	ENSMUST00000212555.1	protein_coding	chr8:94675711-94680082
chr8	94698276	94698391	-	PB1D9	SINE	Alu	chr8	94698284	94698286	-	ENSMUST00000157706.1,ENSMUSG00000088331.1	Gm22846	ENSMUSG00000088331.1	ENSMUST00000157706.1	misc_RNA	chr8:94698016-94698285
chr8	94824085	94824199	+	PB1D7	SINE	Alu	chr8	94824192	94824194	-	ENSMUST00000160245.1,ENSMUSG00000031781.14	Ciapin1	ENSMUSG00000031781.14	ENSMUST00000160245.1	protein_coding	chr8:94822935-94824193
chr8	94861371	94861391	+	(TTTG)n	Simple_repeat	Simple_repeat	chr8	94861384	94861386	+	ENSMUST00000211957.1,ENSMUSG00000031783.10	Polr2c	ENSMUSG00000031783.10	ENSMUST00000211957.1	protein_coding	chr8:94861385-94863555
chr8	94871111	94871208	+	C-rich	Low_complexity	Low_complexity	chr8	94871203	94871205	-	ENSMUST00000212810.1,ENSMUSG00000040631.8	Dok4	ENSMUSG00000040631.8	ENSMUST00000212810.1	protein_coding	chr8:94863828-94871204
chr8	94876318	94876444	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr8	94876329	94876331	-	ENSMUST00000046461.8,ENSMUSG00000040631.8	Dok4	ENSMUSG00000040631.8	ENSMUST00000046461.8	protein_coding	chr8:94863860-94876330
chr8	95020747	95020772	+	(CCCCCA)n	Simple_repeat	Simple_repeat	chr8	95020761	95020763	+	ENSMUST00000211994.1,ENSMUSG00000060470.7	Adgrg3	ENSMUSG00000060470.7	ENSMUST00000211994.1	protein_coding	chr8:95020762-95035864
chr8	95034716	95034819	-	MIRc	SINE	MIR	chr8	95034719	95034721	+	ENSMUST00000212570.1,ENSMUSG00000060470.7	Adgrg3	ENSMUSG00000060470.7	ENSMUST00000212570.1	protein_coding	chr8:95034720-95044868
chr8	95090671	95090769	+	B4A	SINE	B4	chr8	95090675	95090677	-	ENSMUST00000212448.1,ENSMUSG00000110516.1	Gm45758	ENSMUSG00000110516.1	ENSMUST00000212448.1	TEC	chr8:95089671-95090676
chr8	95142451	95142577	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr8	95142546	95142548	-	ENSMUST00000034240.14,ENSMUSG00000031788.14	Kifc3	ENSMUSG00000031788.14	ENSMUST00000034240.14	protein_coding	chr8:95099828-95142547
chr8	95142451	95142577	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr8	95142516	95142518	-	ENSMUST00000169748.8,ENSMUSG00000031788.14	Kifc3	ENSMUSG00000031788.14	ENSMUST00000169748.8	protein_coding	chr8:95099834-95142517
chr8	95142451	95142577	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr8	95142502	95142504	-	ENSMUST00000212554.1,ENSMUSG00000031788.14	Kifc3	ENSMUSG00000031788.14	ENSMUST00000212554.1	protein_coding	chr8:95126556-95142503
chr8	95421397	95421595	+	B3	SINE	B2	chr8	95421532	95421534	-	ENSMUST00000212579.1,ENSMUSG00000031796.7	Cfap20	ENSMUSG00000031796.7	ENSMUST00000212579.1	protein_coding	chr8:95420371-95421533
chr8	95425014	95425553	-	RMER4B	LTR	ERVK	chr8	95425195	95425197	-	ENSMUST00000212131.1,ENSMUSG00000031796.7	Cfap20	ENSMUSG00000031796.7	ENSMUST00000212131.1	protein_coding	chr8:95422850-95425196
chr8	95488429	95488614	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	95488460	95488462	-	ENSMUST00000212441.1,ENSMUSG00000046707.9	Csnk2a2	ENSMUSG00000046707.9	ENSMUST00000212441.1	protein_coding	chr8:95460762-95488461
chr8	95488784	95488809	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	95488784	95488786	-	ENSMUST00000211980.1,ENSMUSG00000046707.9	Csnk2a2	ENSMUSG00000046707.9	ENSMUST00000211980.1	protein_coding	chr8:95461546-95488785
chr8	95496293	95496635	+	MLT1D	LTR	ERVL-MaLR	chr8	95496429	95496431	+	ENSMUST00000212602.1,ENSMUSG00000110427.1	4933406B17Rik	ENSMUSG00000110427.1	ENSMUST00000212602.1	lincRNA	chr8:95496430-95503718
chr8	95496293	95496635	+	MLT1D	LTR	ERVL-MaLR	chr8	95496446	95496448	+	ENSMUST00000212927.1,ENSMUSG00000110427.1	4933406B17Rik	ENSMUSG00000110427.1	ENSMUST00000212927.1	lincRNA	chr8:95496447-95500948
chr8	95593297	95593480	+	A-rich	Low_complexity	Low_complexity	chr8	95593421	95593423	+	ENSMUST00000211925.1,ENSMUSG00000110447.1	Gm31518	ENSMUSG00000110447.1	ENSMUST00000211925.1	lincRNA	chr8:95593422-95613932
chr8	95738486	95739100	+	Lx8	LINE	L1	chr8	95738535	95738537	-	ENSMUST00000212340.1,ENSMUSG00000036550.16	Cnot1	ENSMUSG00000036550.16	ENSMUST00000212340.1	protein_coding	chr8:95736156-95738536
chr8	95778489	95778653	+	B3	SINE	B2	chr8	95778529	95778531	-	ENSMUST00000212863.1,ENSMUSG00000110556.1	Gm45762	ENSMUSG00000110556.1	ENSMUST00000212863.1	TEC	chr8:95775912-95778530
chr8	96512225	96512348	+	Lx8	LINE	L1	chr8	96512339	96512341	+	ENSMUST00000212030.1,ENSMUSG00000110717.1	1700047G07Rik	ENSMUSG00000110717.1	ENSMUST00000212030.1	lincRNA	chr8:96512340-96513604
chr8	96512225	96512348	+	Lx8	LINE	L1	chr8	96512341	96512343	+	ENSMUST00000212351.1,ENSMUSG00000110717.1	1700047G07Rik	ENSMUSG00000110717.1	ENSMUST00000212351.1	lincRNA	chr8:96512342-96513979
chr8	96656084	96656175	+	(TATG)n	Simple_repeat	Simple_repeat	chr8	96656128	96656130	+	ENSMUST00000104745.1,ENSMUSG00000077938.1	Gm24132	ENSMUSG00000077938.1	ENSMUST00000104745.1	miRNA	chr8:96656129-96656219
chr8	97164338	97164373	+	(G)n	Simple_repeat	Simple_repeat	chr8	97164355	97164357	-	ENSMUST00000212293.1,ENSMUSG00000110567.1	Gm45703	ENSMUSG00000110567.1	ENSMUST00000212293.1	lincRNA	chr8:97149419-97164356
chr8	97215851	97216278	-	Lx3C	LINE	L1	chr8	97215970	97215972	+	ENSMUST00000212210.1,ENSMUSG00000110552.1	Gm45788	ENSMUSG00000110552.1	ENSMUST00000212210.1	lincRNA	chr8:97215971-97218968
chr8	97215851	97216278	-	Lx3C	LINE	L1	chr8	97215994	97215996	+	ENSMUST00000213049.1,ENSMUSG00000110552.1	Gm45788	ENSMUSG00000110552.1	ENSMUST00000213049.1	lincRNA	chr8:97215995-97218982
chr8	97222534	97222634	+	U6	snRNA	snRNA	chr8	97222533	97222535	+	ENSMUST00000158914.1,ENSMUSG00000089539.1	Gm25160	ENSMUSG00000089539.1	ENSMUST00000158914.1	snRNA	chr8:97222534-97222635
chr8	97255628	97256150	-	ERVB4_1B-LTR_MM	LTR	ERVK	chr8	97255840	97255842	+	ENSMUST00000103937.1,ENSMUSG00000077125.1	Gm26399	ENSMUSG00000077125.1	ENSMUST00000103937.1	miRNA	chr8:97255841-97255950
chr8	99072462	99072569	+	U6	snRNA	snRNA	chr8	99072462	99072464	+	ENSMUST00000083885.1,ENSMUSG00000065819.1	Gm24693	ENSMUSG00000065819.1	ENSMUST00000083885.1	snRNA	chr8:99072463-99072569
chr8	100059528	100060120	+	RLTR34B_MM	LTR	ERVK	chr8	100060115	100060117	+	ENSMUST00000120764.1,ENSMUSG00000081383.1	Gm5742	ENSMUSG00000081383.1	ENSMUST00000120764.1	processed_pseudogene	chr8:100060116-100060620
chr8	102523893	102523956	+	U6	snRNA	snRNA	chr8	102523893	102523895	+	ENSMUST00000157971.1,ENSMUSG00000088596.1	Gm24602	ENSMUSG00000088596.1	ENSMUST00000157971.1	snRNA	chr8:102523894-102523956
chr8	103563516	103563887	-	RLTR10	LTR	ERVK	chr8	103563622	103563624	-	ENSMUST00000210549.1,ENSMUSG00000109699.1	Gm45277	ENSMUSG00000109699.1	ENSMUST00000210549.1	lincRNA	chr8:103531645-103563623
chr8	104152504	104152899	+	MTA_Mm	LTR	ERVL-MaLR	chr8	104152705	104152707	+	ENSMUST00000210429.1,ENSMUSG00000109909.1	Gm45663	ENSMUSG00000109909.1	ENSMUST00000210429.1	TEC	chr8:104152706-104154337
chr8	104218256	104218301	+	(A)n	Simple_repeat	Simple_repeat	chr8	104218298	104218300	-	ENSMUST00000212627.1,ENSMUSG00000110674.1	Gm45892	ENSMUSG00000110674.1	ENSMUST00000212627.1	antisense	chr8:104217202-104218299
chr8	104257952	104258220	-	Lx6	LINE	L1	chr8	104258125	104258127	+	ENSMUST00000212422.1,ENSMUSG00000054400.16	Cklf	ENSMUSG00000054400.16	ENSMUST00000212422.1	protein_coding	chr8:104258126-104261569
chr8	104395807	104395970	+	G-rich	Low_complexity	Low_complexity	chr8	104395806	104395808	-	ENSMUST00000179802.1,ENSMUSG00000096188.1	Cmtm4	ENSMUSG00000096188.1	ENSMUST00000179802.1	protein_coding	chr8:104348191-104395807
chr8	104507902	104508008	+	U6	snRNA	snRNA	chr8	104507901	104507903	+	ENSMUST00000104445.1,ENSMUSG00000077633.1	Gm22148	ENSMUSG00000077633.1	ENSMUST00000104445.1	snRNA	chr8:104507902-104508008
chr8	104516813	104516996	+	B3A	SINE	B2	chr8	104516988	104516990	-	ENSMUST00000161411.7,ENSMUSG00000031878.18	Nae1	ENSMUSG00000031878.18	ENSMUST00000161411.7	protein_coding	chr8:104511034-104516989
chr8	104516997	104517144	+	B1_Mus2	SINE	Alu	chr8	104517048	104517050	-	ENSMUST00000160148.1,ENSMUSG00000031878.18	Nae1	ENSMUSG00000031878.18	ENSMUST00000160148.1	protein_coding	chr8:104513200-104517049
chr8	104556944	104557063	+	MamGypLTR1c	LTR	Gypsy	chr8	104556986	104556988	-	ENSMUST00000212567.1,ENSMUSG00000110607.1	Gm45843	ENSMUSG00000110607.1	ENSMUST00000212567.1	lincRNA	chr8:104551907-104556987
chr8	104556944	104557063	+	MamGypLTR1c	LTR	Gypsy	chr8	104556986	104556988	-	ENSMUST00000212317.1,ENSMUSG00000110607.1	Gm45843	ENSMUSG00000110607.1	ENSMUST00000212317.1	lincRNA	chr8:104551907-104556987
chr8	104652493	104652725	-	L1Md_F2	LINE	L1	chr8	104652616	104652618	+	ENSMUST00000067136.6,ENSMUSG00000023737.14	1700082M22Rik	ENSMUSG00000023737.14	ENSMUST00000067136.6	antisense	chr8:104652617-104658447
chr8	104709410	104709564	-	RSINE1	SINE	B4	chr8	104709445	104709447	-	ENSMUST00000199331.1,ENSMUSG00000105612.1	Gm44328	ENSMUSG00000105612.1	ENSMUST00000199331.1	miRNA	chr8:104709372-104709446
chr8	104710774	104711399	+	RLTR13D3A1	LTR	ERVK	chr8	104711248	104711250	+	ENSMUST00000212403.1,ENSMUSG00000110497.1	9230110F11Rik	ENSMUSG00000110497.1	ENSMUST00000212403.1	processed_transcript	chr8:104711249-104712716
chr8	104710774	104711399	+	RLTR13D3A1	LTR	ERVK	chr8	104711281	104711283	+	ENSMUST00000212907.1,ENSMUSG00000110497.1	9230110F11Rik	ENSMUSG00000110497.1	ENSMUST00000212907.1	processed_transcript	chr8:104711282-104718260
chr8	105170634	105170768	+	G-rich	Low_complexity	Low_complexity	chr8	105170673	105170675	+	ENSMUST00000052209.8,ENSMUSG00000031885.14	Cbfb	ENSMUSG00000031885.14	ENSMUST00000052209.8	protein_coding	chr8:105170674-105217989
chr8	105170634	105170768	+	G-rich	Low_complexity	Low_complexity	chr8	105170688	105170690	+	ENSMUST00000109392.8,ENSMUSG00000031885.14	Cbfb	ENSMUSG00000031885.14	ENSMUST00000109392.8	protein_coding	chr8:105170689-105217981
chr8	105170634	105170768	+	G-rich	Low_complexity	Low_complexity	chr8	105170743	105170745	+	ENSMUST00000109395.7,ENSMUSG00000031885.14	Cbfb	ENSMUSG00000031885.14	ENSMUST00000109395.7	protein_coding	chr8:105170744-105217981
chr8	105170941	105170962	+	GC_rich	Low_complexity	Low_complexity	chr8	105170944	105170946	+	ENSMUST00000109394.2,ENSMUSG00000031885.14	Cbfb	ENSMUSG00000031885.14	ENSMUST00000109394.2	protein_coding	chr8:105170945-105217981
chr8	105172495	105172602	+	U6	snRNA	snRNA	chr8	105172495	105172497	+	ENSMUST00000082560.1,ENSMUSG00000064494.1	Gm22063	ENSMUSG00000064494.1	ENSMUST00000082560.1	snRNA	chr8:105172496-105172602
chr8	105288735	105289061	+	L2b	LINE	L2	chr8	105289049	105289051	-	ENSMUST00000212922.1,ENSMUSG00000014837.15	4931428F04Rik	ENSMUSG00000014837.15	ENSMUST00000212922.1	protein_coding	chr8:105280409-105289050
chr8	105373771	105373917	-	MIRb	SINE	MIR	chr8	105373818	105373820	+	ENSMUST00000214056.1,ENSMUSG00000014782.16	Plekhg4	ENSMUSG00000014782.16	ENSMUST00000214056.1	protein_coding	chr8:105373819-105382241
chr8	105413540	105413649	+	G-rich	Low_complexity	Low_complexity	chr8	105413570	105413572	+	ENSMUST00000139900.8,ENSMUSG00000054320.16	Lrrc36	ENSMUSG00000054320.16	ENSMUST00000139900.8	protein_coding	chr8:105413571-105443822
chr8	105413540	105413649	+	G-rich	Low_complexity	Low_complexity	chr8	105413621	105413623	+	ENSMUST00000213547.1,ENSMUSG00000054320.16	Lrrc36	ENSMUSG00000054320.16	ENSMUST00000213547.1	protein_coding	chr8:105413622-105464077
chr8	105413540	105413649	+	G-rich	Low_complexity	Low_complexity	chr8	105413621	105413623	+	ENSMUST00000109355.8,ENSMUSG00000054320.16	Lrrc36	ENSMUSG00000054320.16	ENSMUST00000109355.8	protein_coding	chr8:105413622-105464086
chr8	105413540	105413649	+	G-rich	Low_complexity	Low_complexity	chr8	105413627	105413629	+	ENSMUST00000216765.1,ENSMUSG00000054320.16	Lrrc36	ENSMUSG00000054320.16	ENSMUST00000216765.1	protein_coding	chr8:105413628-105464079
chr8	105480285	105480527	-	Charlie8	DNA	hAT-Charlie	chr8	105480460	105480462	-	ENSMUST00000212109.1,ENSMUSG00000039199.6	Zdhhc1	ENSMUSG00000039199.6	ENSMUST00000212109.1	protein_coding	chr8:105472425-105480461
chr8	105605172	105605286	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr8	105605254	105605256	+	ENSMUST00000043531.9,ENSMUSG00000038604.9	Ripor1	ENSMUSG00000038604.9	ENSMUST00000043531.9	protein_coding	chr8:105605255-105622219
chr8	105637467	105637529	+	GC_rich	Low_complexity	Low_complexity	chr8	105637484	105637486	-	ENSMUST00000182046.1,ENSMUSG00000098120.1	Gm5914	ENSMUSG00000098120.1	ENSMUST00000182046.1	lincRNA	chr8:105624350-105637485
chr8	105853180	105853287	-	ID_B1	SINE	B4	chr8	105853277	105853279	-	ENSMUST00000212797.1,ENSMUSG00000036672.5	Cenpt	ENSMUSG00000036672.5	ENSMUST00000212797.1	protein_coding	chr8:105849191-105853278
chr8	105853257	105853350	-	B2_Mm2	SINE	B2	chr8	105853277	105853279	-	ENSMUST00000212797.1,ENSMUSG00000036672.5	Cenpt	ENSMUSG00000036672.5	ENSMUST00000212797.1	protein_coding	chr8:105849191-105853278
chr8	105938382	105938568	-	B3A	SINE	B2	chr8	105938443	105938445	-	ENSMUST00000034369.9,ENSMUSG00000031897.9	Psmb10	ENSMUSG00000031897.9	ENSMUST00000034369.9	protein_coding	chr8:105935739-105938444
chr8	105973082	105973183	-	B1F2	SINE	Alu	chr8	105973096	105973098	+	ENSMUST00000212917.1,ENSMUSG00000110457.1	Gm45752	ENSMUSG00000110457.1	ENSMUST00000212917.1	lincRNA	chr8:105973097-105985879
chr8	106059545	106059649	+	G-rich	Low_complexity	Low_complexity	chr8	106059632	106059634	+	ENSMUST00000212577.1,ENSMUSG00000031902.10	Nfatc3	ENSMUSG00000031902.10	ENSMUST00000212577.1	protein_coding	chr8:106059633-106092576
chr8	106059545	106059649	+	G-rich	Low_complexity	Low_complexity	chr8	106059632	106059634	+	ENSMUST00000109308.2,ENSMUSG00000031902.10	Nfatc3	ENSMUSG00000031902.10	ENSMUST00000109308.2	protein_coding	chr8:106059633-106130537
chr8	106071726	106071874	-	B1_Mus2	SINE	Alu	chr8	106071873	106071875	-	ENSMUST00000175604.2,ENSMUSG00000093345.2	Gm27956	ENSMUSG00000093345.2	ENSMUST00000175604.2	misc_RNA	chr8:106071615-106071874
chr8	106094665	106095227	+	L1_Mus3	LINE	L1	chr8	106095174	106095176	+	ENSMUST00000212691.1,ENSMUSG00000031902.10	Nfatc3	ENSMUSG00000031902.10	ENSMUST00000212691.1	protein_coding	chr8:106095175-106098037
chr8	106098754	106098946	-	B2_Mm2	SINE	B2	chr8	106098764	106098766	+	ENSMUST00000212671.1,ENSMUSG00000031902.10	Nfatc3	ENSMUSG00000031902.10	ENSMUST00000212671.1	protein_coding	chr8:106098765-106101485
chr8	106178289	106178424	-	B1_Mm	SINE	Alu	chr8	106178350	106178352	+	ENSMUST00000212802.1,ENSMUSG00000031904.5	Slc7a6	ENSMUSG00000031904.5	ENSMUST00000212802.1	protein_coding	chr8:106178351-106179660
chr8	106586659	106587510	+	RMER19B	LTR	ERVK	chr8	106587142	106587144	+	ENSMUST00000183365.1,ENSMUSG00000099139.1	1110028F18Rik	ENSMUSG00000099139.1	ENSMUST00000183365.1	lincRNA	chr8:106587143-106594820
chr8	106893507	106893537	+	GC_rich	Low_complexity	Low_complexity	chr8	106893514	106893516	-	ENSMUST00000176090.1,ENSMUSG00000046691.13	Chtf8	ENSMUSG00000046691.13	ENSMUST00000176090.1	protein_coding	chr8:106886045-106893515
chr8	107422202	107422347	+	B1_Mus1	SINE	Alu	chr8	107422326	107422328	-	ENSMUST00000076585.12,ENSMUSG00000003848.14	Nob1	ENSMUSG00000003848.14	ENSMUST00000076585.12	protein_coding	chr8:107418056-107422327
chr8	107840888	107841283	+	MTA_Mm	LTR	ERVL-MaLR	chr8	107840956	107840958	+	ENSMUST00000178119.1,ENSMUSG00000095727.1	Gm23646	ENSMUSG00000095727.1	ENSMUST00000178119.1	miRNA	chr8:107840957-107841057
chr8	107842382	107842777	+	MTA_Mm	LTR	ERVL-MaLR	chr8	107842450	107842452	+	ENSMUST00000179444.1,ENSMUSG00000094718.1	Gm22825	ENSMUSG00000094718.1	ENSMUST00000179444.1	miRNA	chr8:107842451-107842551
chr8	109249849	109249967	+	LTR41	LTR	ERVL	chr8	109249865	109249867	+	ENSMUST00000181098.1,ENSMUSG00000097393.8	D030068K23Rik	ENSMUSG00000097393.8	ENSMUST00000181098.1	lincRNA	chr8:109249866-109273811
chr8	109425605	109425780	+	RLTR17B_Mm	LTR	ERVK	chr8	109425743	109425745	-	ENSMUST00000175080.1,ENSMUSG00000092821.1	Gm23163	ENSMUSG00000092821.1	ENSMUST00000175080.1	miRNA	chr8:109425644-109425744
chr8	109706088	109706114	+	(CGGG)n	Simple_repeat	Simple_repeat	chr8	109706087	109706089	+	ENSMUST00000212000.1,ENSMUSG00000031728.10	Zfp821	ENSMUSG00000031728.10	ENSMUST00000212000.1	protein_coding	chr8:109706088-109724932
chr8	109840587	109840689	-	U6	snRNA	snRNA	chr8	109840688	109840690	-	ENSMUST00000122558.1,ENSMUSG00000084507.1	Gm25321	ENSMUSG00000084507.1	ENSMUST00000122558.1	snRNA	chr8:109840588-109840689
chr8	109843008	109843149	-	ID_B1	SINE	B4	chr8	109843117	109843119	+	ENSMUST00000172892.1,ENSMUSG00000031731.16	Ap1g1	ENSMUSG00000031731.16	ENSMUST00000172892.1	protein_coding	chr8:109843118-109849630
chr8	109924651	109925612	-	L1Md_F2	LINE	L1	chr8	109925387	109925389	+	ENSMUST00000149990.1,ENSMUSG00000085678.1	Gm16349	ENSMUSG00000085678.1	ENSMUST00000149990.1	processed_transcript	chr8:109925388-109933663
chr8	110047045	110047463	-	RLTR44E	LTR	ERVK	chr8	110047431	110047433	+	ENSMUST00000213014.1,ENSMUSG00000110507.1	8030455M16Rik	ENSMUSG00000110507.1	ENSMUST00000213014.1	lincRNA	chr8:110047432-110057176
chr8	110421360	110421467	-	U6	snRNA	snRNA	chr8	110421466	110421468	-	ENSMUST00000082459.1,ENSMUSG00000064393.1	Gm23627	ENSMUSG00000064393.1	ENSMUST00000082459.1	snRNA	chr8:110421361-110421467
chr8	110444453	110444577	-	ORR1F	LTR	ERVL-MaLR	chr8	110444488	110444490	+	ENSMUST00000212034.1,ENSMUSG00000059854.8	Hydin	ENSMUSG00000059854.8	ENSMUST00000212034.1	protein_coding	chr8:110444489-110447518
chr8	110498851	110499044	+	7SLRNA	srpRNA	srpRNA	chr8	110498851	110498853	+	ENSMUST00000175371.2,ENSMUSG00000093112.2	Gm22701	ENSMUSG00000093112.2	ENSMUST00000175371.2	misc_RNA	chr8:110498852-110499142
chr8	110498851	110499044	+	7SLRNA	srpRNA	srpRNA	chr8	110498984	110498986	+	ENSMUST00000197243.1,ENSMUSG00000105131.1	Gm47306	ENSMUSG00000105131.1	ENSMUST00000197243.1	miRNA	chr8:110498985-110499044
chr8	110845029	110845059	+	(A)n	Simple_repeat	Simple_repeat	chr8	110845056	110845058	-	ENSMUST00000212613.1,ENSMUSG00000033732.10	Sf3b3	ENSMUSG00000033732.10	ENSMUST00000212613.1	protein_coding	chr8:110840568-110845057
chr8	110859513	110859729	+	B3	SINE	B2	chr8	110859703	110859705	+	ENSMUST00000173501.1,ENSMUSG00000031753.16	Cog4	ENSMUSG00000031753.16	ENSMUST00000173501.1	protein_coding	chr8:110859704-110868421
chr8	111016499	111016697	+	B3	SINE	B2	chr8	111016529	111016531	-	ENSMUST00000175346.1,ENSMUSG00000093087.1	Mir3473d	ENSMUSG00000093087.1	ENSMUST00000175346.1	miRNA	chr8:111016450-111016530
chr8	111041922	111042049	+	B1_Mur2	SINE	Alu	chr8	111042023	111042025	-	ENSMUST00000174930.1,ENSMUSG00000092671.1	Gm24103	ENSMUSG00000092671.1	ENSMUST00000174930.1	miRNA	chr8:111041948-111042024
chr8	111092342	111092765	+	RLTR10C	LTR	ERVK	chr8	111092425	111092427	-	ENSMUST00000190222.1,ENSMUSG00000033633.14	Clec18a	ENSMUSG00000033633.14	ENSMUST00000190222.1	protein_coding	chr8:111069498-111092426
chr8	111194948	111194971	+	AT_rich	Low_complexity	Low_complexity	chr8	111194963	111194965	+	ENSMUST00000102427.1,ENSMUSG00000076382.1	Gm23193	ENSMUSG00000076382.1	ENSMUST00000102427.1	miRNA	chr8:111194964-111195045
chr8	111490697	111490848	-	B1_Mus1	SINE	Alu	chr8	111490752	111490754	-	ENSMUST00000212327.1,ENSMUSG00000031959.15	Wdr59	ENSMUSG00000031959.15	ENSMUST00000212327.1	protein_coding	chr8:111486852-111490753
chr8	111928088	111928235	+	B1_Mus2	SINE	Alu	chr8	111928159	111928161	-	ENSMUST00000213050.1,ENSMUSG00000031951.8	Tmem231	ENSMUSG00000031951.8	ENSMUST00000213050.1	protein_coding	chr8:111925773-111928160
chr8	112004688	112004858	-	B3A	SINE	B2	chr8	112004766	112004768	-	ENSMUST00000212693.1,ENSMUSG00000031948.14	Kars	ENSMUSG00000031948.14	ENSMUST00000212693.1	protein_coding	chr8:112002349-112004767
chr8	112581633	112581738	+	7SK	RNA	RNA	chr8	112581635	112581637	+	ENSMUST00000158719.1,ENSMUSG00000089344.1	Gm22664	ENSMUSG00000089344.1	ENSMUST00000158719.1	misc_RNA	chr8:112581636-112581740
chr8	113528506	113528671	-	U1	snRNA	snRNA	chr8	113528670	113528672	-	ENSMUST00000157633.1,ENSMUSG00000088258.1	Gm24291	ENSMUSG00000088258.1	ENSMUST00000157633.1	snRNA	chr8:113528510-113528671
chr8	114368032	114368174	+	MER2	DNA	TcMar-Tigger	chr8	114368115	114368117	+	ENSMUST00000124143.1,ENSMUSG00000046844.6	Vat1l	ENSMUSG00000046844.6	ENSMUST00000124143.1	protein_coding	chr8:114368116-114374070
chr8	115052827	115052913	-	5S	rRNA	rRNA	chr8	115052912	115052914	-	ENSMUST00000157803.1,ENSMUSG00000088428.1	Gm22556	ENSMUSG00000088428.1	ENSMUST00000157803.1	rRNA	chr8:115052814-115052913
chr8	115591170	115591273	-	U6	snRNA	snRNA	chr8	115591272	115591274	-	ENSMUST00000083156.1,ENSMUSG00000065090.1	Gm23677	ENSMUSG00000065090.1	ENSMUST00000083156.1	snRNA	chr8:115591170-115591273
chr8	115707089	115707128	+	(TC)n	Simple_repeat	Simple_repeat	chr8	115707095	115707097	-	ENSMUST00000069009.6,ENSMUSG00000055435.6	Maf	ENSMUSG00000055435.6	ENSMUST00000069009.6	protein_coding	chr8:115682942-115707096
chr8	116732925	116733037	+	(TG)n	Simple_repeat	Simple_repeat	chr8	116732990	116732992	-	ENSMUST00000109102.3,ENSMUSG00000031758.10	Cdyl2	ENSMUSG00000031758.10	ENSMUST00000109102.3	protein_coding	chr8:116574400-116732991
chr8	116765230	116765635	-	MLT1C	LTR	ERVL-MaLR	chr8	116765478	116765480	-	ENSMUST00000098379.2,ENSMUSG00000074072.2	Gm10620	ENSMUSG00000074072.2	ENSMUST00000098379.2	pseudogene	chr8:116764144-116765479
chr8	116894399	116894612	+	B4A	SINE	B4	chr8	116894523	116894525	-	ENSMUST00000155260.1,ENSMUSG00000014633.15	Cmc2	ENSMUSG00000014633.15	ENSMUST00000155260.1	protein_coding	chr8:116888685-116894524
chr8	116943366	116943452	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	116943392	116943394	+	ENSMUST00000109099.3,ENSMUSG00000047388.10	Atmin	ENSMUSG00000047388.10	ENSMUST00000109099.3	protein_coding	chr8:116943393-116960445
chr8	117256924	117257101	+	GC_rich	Low_complexity	Low_complexity	chr8	117257063	117257065	+	ENSMUST00000166750.8,ENSMUSG00000034390.16	Cmip	ENSMUSG00000034390.16	ENSMUST00000166750.8	protein_coding	chr8:117257064-117459430
chr8	117671523	117671602	-	MIRb	SINE	MIR	chr8	117671546	117671548	-	ENSMUST00000037955.13,ENSMUSG00000034308.13	Sdr42e1	ENSMUSG00000034308.13	ENSMUST00000037955.13	protein_coding	chr8:117661399-117671547
chr8	117677101	117677209	-	MIRc	SINE	MIR	chr8	117677208	117677210	-	ENSMUST00000213044.1,ENSMUSG00000110459.1	Gm31717	ENSMUSG00000110459.1	ENSMUST00000213044.1	lincRNA	chr8:117675815-117677209
chr8	117681739	117682096	+	ORR1E	LTR	ERVL-MaLR	chr8	117681849	117681851	+	ENSMUST00000212223.1,ENSMUSG00000110151.2	Gm38416	ENSMUSG00000110151.2	ENSMUST00000212223.1	lincRNA	chr8:117681850-117691452
chr8	117748178	117748414	+	B4A	SINE	B4	chr8	117748259	117748261	-	ENSMUST00000212910.1,ENSMUSG00000110494.1	Gm31774	ENSMUSG00000110494.1	ENSMUST00000212910.1	antisense	chr8:117746331-117748260
chr8	118314294	118314433	+	RMER17C	LTR	ERVK	chr8	118314412	118314414	+	ENSMUST00000123567.1,ENSMUSG00000031841.19	Cdh13	ENSMUSG00000031841.19	ENSMUST00000123567.1	protein_coding	chr8:118314413-118856206
chr8	118426492	118426599	-	U6	snRNA	snRNA	chr8	118426598	118426600	-	ENSMUST00000082867.1,ENSMUSG00000064801.1	Gm24035	ENSMUSG00000064801.1	ENSMUST00000082867.1	snRNA	chr8:118426493-118426599
chr8	119345113	119345276	-	B3A	SINE	B2	chr8	119345244	119345246	+	ENSMUST00000212795.1,ENSMUSG00000031839.7	Hsbp1	ENSMUSG00000031839.7	ENSMUST00000212795.1	protein_coding	chr8:119345245-119348691
chr8	119378691	119378821	+	RMER15	LTR	ERVL	chr8	119378695	119378697	+	ENSMUST00000212135.1,ENSMUSG00000110470.1	Gm45723	ENSMUSG00000110470.1	ENSMUST00000212135.1	lincRNA	chr8:119378696-119386537
chr8	119434098	119434128	+	(TTTG)n	Simple_repeat	Simple_repeat	chr8	119434123	119434125	+	ENSMUST00000131448.7,ENSMUSG00000074063.10	Osgin1	ENSMUSG00000074063.10	ENSMUST00000131448.7	protein_coding	chr8:119434124-119443077
chr8	119437186	119437230	+	L3	LINE	CR1	chr8	119437188	119437190	+	ENSMUST00000144381.1,ENSMUSG00000074063.10	Osgin1	ENSMUSG00000074063.10	ENSMUST00000144381.1	protein_coding	chr8:119437189-119445057
chr8	119515767	119515894	-	B1_Mus2	SINE	Alu	chr8	119515842	119515844	-	ENSMUST00000212736.1,ENSMUSG00000031835.16	Mbtps1	ENSMUSG00000031835.16	ENSMUST00000212736.1	protein_coding	chr8:119510265-119515843
chr8	119910283	119910422	-	RSINE1	SINE	B4	chr8	119910359	119910361	+	ENSMUST00000144458.7,ENSMUSG00000031826.20	Usp10	ENSMUSG00000031826.20	ENSMUST00000144458.7	protein_coding	chr8:119910360-119957555
chr8	119943971	119944120	-	MT2B	LTR	ERVL	chr8	119944077	119944079	+	ENSMUST00000135210.1,ENSMUSG00000031826.20	Usp10	ENSMUSG00000031826.20	ENSMUST00000135210.1	protein_coding	chr8:119944078-119948718
chr8	119944010	119944131	-	B1_Mus1	SINE	Alu	chr8	119944077	119944079	+	ENSMUST00000135210.1,ENSMUSG00000031826.20	Usp10	ENSMUSG00000031826.20	ENSMUST00000135210.1	protein_coding	chr8:119944078-119948718
chr8	120086805	120086904	+	B1F2	SINE	Alu	chr8	120086834	120086836	-	ENSMUST00000150444.1,ENSMUSG00000031823.14	Zdhhc7	ENSMUSG00000031823.14	ENSMUST00000150444.1	protein_coding	chr8:120082403-120086835
chr8	120101041	120101076	+	GC_rich	Low_complexity	Low_complexity	chr8	120101071	120101073	-	ENSMUST00000123186.1,ENSMUSG00000031823.14	Zdhhc7	ENSMUSG00000031823.14	ENSMUST00000123186.1	protein_coding	chr8:120092975-120101072
chr8	120228161	120228341	+	GA-rich	Low_complexity	Low_complexity	chr8	120228229	120228231	-	ENSMUST00000183235.1,ENSMUSG00000097960.1	A330074K22Rik	ENSMUSG00000097960.1	ENSMUST00000183235.1	lincRNA	chr8:120204434-120228230
chr8	120228404	120228464	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr8	120228455	120228457	+	ENSMUST00000180448.2,ENSMUSG00000031822.20	Gse1	ENSMUSG00000031822.20	ENSMUST00000180448.2	protein_coding	chr8:120228456-120553634
chr8	120443432	120443562	-	RLTR17B_Mm	LTR	ERVK	chr8	120443548	120443550	-	ENSMUST00000116899.2,ENSMUSG00000080549.2	Gm22715	ENSMUSG00000080549.2	ENSMUST00000116899.2	miRNA	chr8:120443459-120443549
chr8	120443450	120443568	+	RLTR17B_Mm	LTR	ERVK	chr8	120443548	120443550	-	ENSMUST00000116899.2,ENSMUSG00000080549.2	Gm22715	ENSMUSG00000080549.2	ENSMUST00000116899.2	miRNA	chr8:120443459-120443549
chr8	120717565	120717758	-	7SK	RNA	RNA	chr8	120717753	120717755	-	ENSMUST00000157791.1,ENSMUSG00000088416.1	Gm24239	ENSMUSG00000088416.1	ENSMUST00000157791.1	misc_RNA	chr8:120717500-120717754
chr8	121059667	121060528	+	Lx8	LINE	L1	chr8	121060412	121060414	-	ENSMUST00000181231.1,ENSMUSG00000097336.8	Fendrr	ENSMUSG00000097336.8	ENSMUST00000181231.1	processed_transcript	chr8:121058803-121060413
chr8	121084351	121084492	+	(CGG)n	Simple_repeat	Simple_repeat	chr8	121084385	121084387	+	ENSMUST00000181504.1,ENSMUSG00000042812.5	Foxf1	ENSMUSG00000042812.5	ENSMUST00000181504.1	protein_coding	chr8:121084386-121088144
chr8	121107573	121107711	+	B1_Mus1	SINE	Alu	chr8	121107642	121107644	-	ENSMUST00000156606.7,ENSMUSG00000031816.15	Mthfsd	ENSMUSG00000031816.15	ENSMUST00000156606.7	protein_coding	chr8:121102723-121107643
chr8	121201657	121201891	+	L1M5	LINE	L1	chr8	121201834	121201836	-	ENSMUST00000180796.1,ENSMUSG00000097097.2	5033426O07Rik	ENSMUSG00000097097.2	ENSMUST00000180796.1	lincRNA	chr8:121198714-121201835
chr8	121434895	121434986	+	B1F	SINE	Alu	chr8	121434979	121434981	+	ENSMUST00000181666.1,ENSMUSG00000097438.1	Gm26784	ENSMUSG00000097438.1	ENSMUST00000181666.1	lincRNA	chr8:121434980-121435389
chr8	121607191	121607337	-	B1_Mus1	SINE	Alu	chr8	121607217	121607219	-	ENSMUST00000139379.1,ENSMUSG00000061410.6	Zcchc14	ENSMUSG00000061410.6	ENSMUST00000139379.1	protein_coding	chr8:121606214-121607218
chr8	121673900	121674204	-	MLT1J	LTR	ERVL-MaLR	chr8	121674087	121674089	-	ENSMUST00000211931.1,ENSMUSG00000110673.1	Gm45833	ENSMUSG00000110673.1	ENSMUST00000211931.1	lincRNA	chr8:121666814-121674088
chr8	121730556	121730587	+	(T)n	Simple_repeat	Simple_repeat	chr8	121730562	121730564	+	ENSMUST00000026357.11,ENSMUSG00000025318.13	Jph3	ENSMUSG00000025318.13	ENSMUST00000026357.11	protein_coding	chr8:121730563-121790821
chr8	121730556	121730587	+	(T)n	Simple_repeat	Simple_repeat	chr8	121730566	121730568	+	ENSMUST00000167439.1,ENSMUSG00000025318.13	Jph3	ENSMUSG00000025318.13	ENSMUST00000167439.1	protein_coding	chr8:121730567-121794276
chr8	121797348	121797469	+	B1_Mur1	SINE	Alu	chr8	121797427	121797429	-	ENSMUST00000174206.1,ENSMUSG00000040263.16	Klhdc4	ENSMUSG00000040263.16	ENSMUST00000174206.1	protein_coding	chr8:121796344-121797428
chr8	121830435	121830543	+	U6	snRNA	snRNA	chr8	121830435	121830437	+	ENSMUST00000104233.1,ENSMUSG00000077421.1	Gm24283	ENSMUSG00000077421.1	ENSMUST00000104233.1	snRNA	chr8:121830436-121830542
chr8	121832844	121833274	+	MMERGLN_LTR	LTR	ERV1	chr8	121833246	121833248	+	ENSMUST00000212158.1,ENSMUSG00000110631.1	Gm42047	ENSMUSG00000110631.1	ENSMUST00000212158.1	lincRNA	chr8:121833247-121835108
chr8	121833274	121840834	+	MMERGLN-int	LTR	ERV1	chr8	121833652	121833654	+	ENSMUST00000212899.1,ENSMUSG00000110631.1	Gm42047	ENSMUSG00000110631.1	ENSMUST00000212899.1	lincRNA	chr8:121833653-121841178
chr8	122373638	122374040	-	MTC	LTR	ERVL-MaLR	chr8	122374036	122374038	+	ENSMUST00000176061.1,ENSMUSG00000093682.1	Gm20681	ENSMUSG00000093682.1	ENSMUST00000176061.1	lincRNA	chr8:122374037-122376444
chr8	122403154	122403396	+	GA-rich	Low_complexity	Low_complexity	chr8	122403269	122403271	+	ENSMUST00000177195.1,ENSMUSG00000017478.15	Zc3h18	ENSMUSG00000017478.15	ENSMUST00000177195.1	protein_coding	chr8:122403270-122406127
chr8	122403154	122403396	+	GA-rich	Low_complexity	Low_complexity	chr8	122403339	122403341	+	ENSMUST00000175819.1,ENSMUSG00000017478.15	Zc3h18	ENSMUSG00000017478.15	ENSMUST00000175819.1	protein_coding	chr8:122403340-122411403
chr8	122471659	122472594	+	MERVL_2A-int	LTR	ERVL	chr8	122471711	122471713	-	ENSMUST00000175383.1,ENSMUSG00000093124.1	Gm24366	ENSMUSG00000093124.1	ENSMUST00000175383.1	miRNA	chr8:122471627-122471712
chr8	122475939	122476105	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	122476063	122476065	-	ENSMUST00000014614.3,ENSMUSG00000014470.4	Rnf166	ENSMUSG00000014470.4	ENSMUST00000014614.3	protein_coding	chr8:122466147-122476064
chr8	122520568	122520674	-	U6	snRNA	snRNA	chr8	122520673	122520675	-	ENSMUST00000083146.1,ENSMUSG00000065080.1	Gm26497	ENSMUSG00000065080.1	ENSMUST00000083146.1	snRNA	chr8:122520568-122520674
chr8	122982836	122982943	-	U6	snRNA	snRNA	chr8	122982942	122982944	-	ENSMUST00000083981.1,ENSMUSG00000065915.1	Gm24445	ENSMUSG00000065915.1	ENSMUST00000083981.1	snRNA	chr8:122982837-122982943
chr8	122982943	122982962	+	AT_rich	Low_complexity	Low_complexity	chr8	122982942	122982944	-	ENSMUST00000083981.1,ENSMUSG00000065915.1	Gm24445	ENSMUSG00000065915.1	ENSMUST00000083981.1	snRNA	chr8:122982837-122982943
chr8	123062835	123063168	+	RLTR31D_MM	LTR	ERVK	chr8	123062941	123062943	+	ENSMUST00000142541.7,ENSMUSG00000000738.18	Spg7	ENSMUSG00000000738.18	ENSMUST00000142541.7	protein_coding	chr8:123062942-123079987
chr8	123062835	123063168	+	RLTR31D_MM	LTR	ERVK	chr8	123062987	123062989	+	ENSMUST00000125975.7,ENSMUSG00000000738.18	Spg7	ENSMUSG00000000738.18	ENSMUST00000125975.7	protein_coding	chr8:123062988-123097760
chr8	123164715	123165456	+	RLTR4_Mm	LTR	ERV1	chr8	123165254	123165256	+	ENSMUST00000212411.1,ENSMUSG00000110537.1	Gm4316	ENSMUSG00000110537.1	ENSMUST00000212411.1	lincRNA	chr8:123165255-123173149
chr8	123172595	123172950	+	RLTR10D2	LTR	ERVK	chr8	123172844	123172846	+	ENSMUST00000212490.1,ENSMUSG00000110537.1	Gm4316	ENSMUSG00000110537.1	ENSMUST00000212490.1	lincRNA	chr8:123172845-123178765
chr8	123254056	123254143	+	GC_rich	Low_complexity	Low_complexity	chr8	123254108	123254110	-	ENSMUST00000155869.7,ENSMUSG00000001062.18	Vps9d1	ENSMUSG00000001062.18	ENSMUST00000155869.7	protein_coding	chr8:123242358-123254109
chr8	123254056	123254143	+	GC_rich	Low_complexity	Low_complexity	chr8	123254091	123254093	-	ENSMUST00000118279.1,ENSMUSG00000001062.18	Vps9d1	ENSMUSG00000001062.18	ENSMUST00000118279.1	protein_coding	chr8:123242359-123254092
chr8	123254056	123254143	+	GC_rich	Low_complexity	Low_complexity	chr8	123254104	123254106	-	ENSMUST00000130275.7,ENSMUSG00000001062.18	Vps9d1	ENSMUSG00000001062.18	ENSMUST00000130275.7	protein_coding	chr8:123244947-123254105
chr8	123501016	123501215	-	B3A	SINE	B2	chr8	123501085	123501087	+	ENSMUST00000146795.1,ENSMUSG00000031967.15	Afg3l1	ENSMUSG00000031967.15	ENSMUST00000146795.1	protein_coding	chr8:123501086-123501615
chr8	123515380	123515422	+	GC_rich	Low_complexity	Low_complexity	chr8	123515389	123515391	-	ENSMUST00000177240.7,ENSMUSG00000031970.16	Dbndd1	ENSMUSG00000031970.16	ENSMUST00000177240.7	protein_coding	chr8:123505687-123515390
chr8	123538783	123538904	-	5S	rRNA	rRNA	chr8	123538903	123538905	-	ENSMUST00000178106.1,ENSMUSG00000094720.1	n-R5s100	ENSMUSG00000094720.1	ENSMUST00000178106.1	rRNA	chr8:123538786-123538904
chr8	123540490	123540611	-	5S	rRNA	rRNA	chr8	123540610	123540612	-	ENSMUST00000177910.1,ENSMUSG00000095073.1	n-R5s101	ENSMUSG00000095073.1	ENSMUST00000177910.1	rRNA	chr8:123540493-123540611
chr8	123542175	123542296	-	5S	rRNA	rRNA	chr8	123542295	123542297	-	ENSMUST00000101990.2,ENSMUSG00000096613.1	n-R5s102	ENSMUSG00000096613.1	ENSMUST00000101990.2	rRNA	chr8:123542178-123542296
chr8	123543870	123543991	-	5S	rRNA	rRNA	chr8	123543990	123543992	-	ENSMUST00000178755.1,ENSMUSG00000095249.1	n-R5s103	ENSMUSG00000095249.1	ENSMUST00000178755.1	rRNA	chr8:123543873-123543991
chr8	123545575	123545696	-	5S	rRNA	rRNA	chr8	123545695	123545697	-	ENSMUST00000179107.1,ENSMUSG00000096307.1	n-R5s104	ENSMUSG00000096307.1	ENSMUST00000179107.1	rRNA	chr8:123545578-123545696
chr8	123547262	123547383	-	5S	rRNA	rRNA	chr8	123547382	123547384	-	ENSMUST00000178499.1,ENSMUSG00000095966.1	n-R5s105	ENSMUSG00000095966.1	ENSMUST00000178499.1	rRNA	chr8:123547265-123547383
chr8	123548953	123549074	-	5S	rRNA	rRNA	chr8	123549073	123549075	-	ENSMUST00000179060.1,ENSMUSG00000094537.1	n-R5s106	ENSMUSG00000094537.1	ENSMUST00000179060.1	rRNA	chr8:123548956-123549074
chr8	123550664	123550785	-	5S	rRNA	rRNA	chr8	123550784	123550786	-	ENSMUST00000179704.1,ENSMUSG00000096367.1	n-R5s107	ENSMUSG00000096367.1	ENSMUST00000179704.1	rRNA	chr8:123550667-123550785
chr8	123552361	123552482	-	5S	rRNA	rRNA	chr8	123552481	123552483	-	ENSMUST00000177575.1,ENSMUSG00000096335.1	n-R5s108	ENSMUSG00000096335.1	ENSMUST00000177575.1	rRNA	chr8:123552364-123552482
chr8	123554057	123554178	-	5S	rRNA	rRNA	chr8	123554177	123554179	-	ENSMUST00000179195.1,ENSMUSG00000094265.1	n-R5s109	ENSMUSG00000094265.1	ENSMUST00000179195.1	rRNA	chr8:123554060-123554178
chr8	123555760	123555881	-	5S	rRNA	rRNA	chr8	123555880	123555882	-	ENSMUST00000179995.1,ENSMUSG00000095131.1	n-R5s110	ENSMUSG00000095131.1	ENSMUST00000179995.1	rRNA	chr8:123555763-123555881
chr8	123557487	123557608	-	5S	rRNA	rRNA	chr8	123557607	123557609	-	ENSMUST00000178203.1,ENSMUSG00000094097.1	n-R5s111	ENSMUSG00000094097.1	ENSMUST00000178203.1	rRNA	chr8:123557490-123557608
chr8	123559198	123559319	-	5S	rRNA	rRNA	chr8	123559318	123559320	-	ENSMUST00000178208.1,ENSMUSG00000095449.1	n-R5s112	ENSMUSG00000095449.1	ENSMUST00000178208.1	rRNA	chr8:123559201-123559319
chr8	123560885	123561006	-	5S	rRNA	rRNA	chr8	123561005	123561007	-	ENSMUST00000179143.1,ENSMUSG00000094801.1	n-R5s113	ENSMUSG00000094801.1	ENSMUST00000179143.1	rRNA	chr8:123560888-123561006
chr8	123564283	123564404	-	5S	rRNA	rRNA	chr8	123564403	123564405	-	ENSMUST00000179019.1,ENSMUSG00000095915.1	n-R5s115	ENSMUSG00000095915.1	ENSMUST00000179019.1	rRNA	chr8:123564286-123564404
chr8	123565966	123566087	-	5S	rRNA	rRNA	chr8	123566086	123566088	-	ENSMUST00000179081.1,ENSMUSG00000094751.1	Gm25018	ENSMUSG00000094751.1	ENSMUST00000179081.1	rRNA	chr8:123565969-123566087
chr8	123567634	123567755	-	5S	rRNA	rRNA	chr8	123567754	123567756	-	ENSMUST00000179431.1,ENSMUSG00000096710.1	n-R5s117	ENSMUSG00000096710.1	ENSMUST00000179431.1	rRNA	chr8:123567637-123567755
chr8	123569325	123569446	-	5S	rRNA	rRNA	chr8	123569445	123569447	-	ENSMUST00000179887.1,ENSMUSG00000094178.1	n-R5s118	ENSMUSG00000094178.1	ENSMUST00000179887.1	rRNA	chr8:123569328-123569446
chr8	123572707	123572828	-	5S	rRNA	rRNA	chr8	123572827	123572829	-	ENSMUST00000180000.1,ENSMUSG00000096855.1	n-R5s120	ENSMUSG00000096855.1	ENSMUST00000180000.1	rRNA	chr8:123572710-123572828
chr8	123574394	123574515	-	5S	rRNA	rRNA	chr8	123574514	123574516	-	ENSMUST00000177589.1,ENSMUSG00000095410.1	n-R5s121	ENSMUSG00000095410.1	ENSMUST00000177589.1	rRNA	chr8:123574397-123574515
chr8	123576073	123576194	-	5S	rRNA	rRNA	chr8	123576193	123576195	-	ENSMUST00000179500.1,ENSMUSG00000094956.1	n-R5s122	ENSMUSG00000094956.1	ENSMUST00000179500.1	rRNA	chr8:123576076-123576194
chr8	123577752	123577873	-	5S	rRNA	rRNA	chr8	123577872	123577874	-	ENSMUST00000178804.1,ENSMUSG00000095652.1	n-R5s123	ENSMUSG00000095652.1	ENSMUST00000178804.1	rRNA	chr8:123577755-123577873
chr8	123579447	123579568	-	5S	rRNA	rRNA	chr8	123579567	123579569	-	ENSMUST00000180334.1,ENSMUSG00000093893.1	n-R5s124	ENSMUSG00000093893.1	ENSMUST00000180334.1	rRNA	chr8:123579450-123579568
chr8	123581152	123581273	-	5S	rRNA	rRNA	chr8	123581272	123581274	-	ENSMUST00000179377.1,ENSMUSG00000096092.1	n-R5s125	ENSMUSG00000096092.1	ENSMUST00000179377.1	rRNA	chr8:123581155-123581273
chr8	123582847	123582968	-	5S	rRNA	rRNA	chr8	123582967	123582969	-	ENSMUST00000178677.1,ENSMUSG00000093852.1	Gm24312	ENSMUSG00000093852.1	ENSMUST00000178677.1	rRNA	chr8:123582850-123582968
chr8	123586239	123586360	-	5S	rRNA	rRNA	chr8	123586359	123586361	-	ENSMUST00000180096.1,ENSMUSG00000094003.1	n-R5s128	ENSMUSG00000094003.1	ENSMUST00000180096.1	rRNA	chr8:123586242-123586360
chr8	123587956	123588077	-	5S	rRNA	rRNA	chr8	123588076	123588078	-	ENSMUST00000180122.1,ENSMUSG00000094455.1	n-R5s129	ENSMUSG00000094455.1	ENSMUST00000180122.1	rRNA	chr8:123587959-123588077
chr8	123589651	123589772	-	5S	rRNA	rRNA	chr8	123589771	123589773	-	ENSMUST00000178128.1,ENSMUSG00000096785.1	n-R5s130	ENSMUSG00000096785.1	ENSMUST00000178128.1	rRNA	chr8:123589654-123589772
chr8	123593068	123593189	-	5S	rRNA	rRNA	chr8	123593188	123593190	-	ENSMUST00000179843.1,ENSMUSG00000094916.1	Gm26391	ENSMUSG00000094916.1	ENSMUST00000179843.1	rRNA	chr8:123593071-123593189
chr8	123594751	123594872	-	5S	rRNA	rRNA	chr8	123594871	123594873	-	ENSMUST00000179275.1,ENSMUSG00000096343.1	n-R5s133	ENSMUSG00000096343.1	ENSMUST00000179275.1	rRNA	chr8:123594754-123594872
chr8	123596454	123596575	-	5S	rRNA	rRNA	chr8	123596574	123596576	-	ENSMUST00000178983.1,ENSMUSG00000096015.1	n-R5s134	ENSMUSG00000096015.1	ENSMUST00000178983.1	rRNA	chr8:123596457-123596575
chr8	123598155	123598276	-	5S	rRNA	rRNA	chr8	123598275	123598277	-	ENSMUST00000177555.1,ENSMUSG00000096406.1	Rn5s	ENSMUSG00000096406.1	ENSMUST00000177555.1	rRNA	chr8:123598158-123598276
chr8	123599858	123599979	-	5S	rRNA	rRNA	chr8	123599978	123599980	-	ENSMUST00000179080.1,ENSMUSG00000096037.1	n-R5s136	ENSMUSG00000096037.1	ENSMUST00000179080.1	rRNA	chr8:123599861-123599979
chr8	123601569	123601680	-	5S	rRNA	rRNA	chr8	123601679	123601681	-	ENSMUST00000093696.1,ENSMUSG00000094541.1	Gm24089	ENSMUSG00000094541.1	ENSMUST00000093696.1	rRNA	chr8:123601572-123601680
chr8	123603244	123603365	-	5S	rRNA	rRNA	chr8	123603364	123603366	-	ENSMUST00000179476.1,ENSMUSG00000095183.1	n-R5s138	ENSMUSG00000095183.1	ENSMUST00000179476.1	rRNA	chr8:123603247-123603365
chr8	123604945	123605066	-	5S	rRNA	rRNA	chr8	123605065	123605067	-	ENSMUST00000178975.1,ENSMUSG00000094760.1	n-R5s139	ENSMUSG00000094760.1	ENSMUST00000178975.1	rRNA	chr8:123604948-123605066
chr8	123606610	123606731	-	5S	rRNA	rRNA	chr8	123606730	123606732	-	ENSMUST00000177995.1,ENSMUSG00000095376.1	Gm22109	ENSMUSG00000095376.1	ENSMUST00000177995.1	rRNA	chr8:123606613-123606731
chr8	123608317	123608438	-	5S	rRNA	rRNA	chr8	123608437	123608439	-	ENSMUST00000178066.1,ENSMUSG00000095749.1	n-R5s141	ENSMUSG00000095749.1	ENSMUST00000178066.1	rRNA	chr8:123608320-123608438
chr8	123610014	123610135	-	5S	rRNA	rRNA	chr8	123610134	123610136	-	ENSMUST00000178820.1,ENSMUSG00000094657.1	n-R5s142	ENSMUSG00000094657.1	ENSMUST00000178820.1	rRNA	chr8:123610017-123610135
chr8	123611712	123611833	-	5S	rRNA	rRNA	chr8	123611832	123611834	-	ENSMUST00000179542.1,ENSMUSG00000095645.1	n-R5s143	ENSMUSG00000095645.1	ENSMUST00000179542.1	rRNA	chr8:123611715-123611833
chr8	123613411	123613532	-	5S	rRNA	rRNA	chr8	123613531	123613533	-	ENSMUST00000178859.1,ENSMUSG00000096765.1	n-R5s144	ENSMUSG00000096765.1	ENSMUST00000178859.1	rRNA	chr8:123613414-123613532
chr8	123615096	123615217	-	5S	rRNA	rRNA	chr8	123615216	123615218	-	ENSMUST00000179432.1,ENSMUSG00000096300.1	Gm25212	ENSMUSG00000096300.1	ENSMUST00000179432.1	rRNA	chr8:123615099-123615217
chr8	123616807	123616928	-	5S	rRNA	rRNA	chr8	123616927	123616929	-	ENSMUST00000177889.1,ENSMUSG00000096170.1	n-R5s146	ENSMUSG00000096170.1	ENSMUST00000177889.1	rRNA	chr8:123616810-123616928
chr8	123618533	123618654	-	5S	rRNA	rRNA	chr8	123618653	123618655	-	ENSMUST00000178027.1,ENSMUSG00000094270.1	Gm22291	ENSMUSG00000094270.1	ENSMUST00000178027.1	rRNA	chr8:123618536-123618654
chr8	123620238	123620359	-	5S	rRNA	rRNA	chr8	123620358	123620360	-	ENSMUST00000178069.1,ENSMUSG00000095350.1	Gm23284	ENSMUSG00000095350.1	ENSMUST00000178069.1	rRNA	chr8:123620241-123620359
chr8	123621925	123622046	-	5S	rRNA	rRNA	chr8	123622045	123622047	-	ENSMUST00000178520.1,ENSMUSG00000095453.1	n-R5s149	ENSMUSG00000095453.1	ENSMUST00000178520.1	rRNA	chr8:123621928-123622046
chr8	123623634	123623745	-	5S	rRNA	rRNA	chr8	123623744	123623746	-	ENSMUST00000175042.1,ENSMUSG00000095723.1	Gm23647	ENSMUSG00000095723.1	ENSMUST00000175042.1	rRNA	chr8:123623637-123623745
chr8	123915586	123915793	-	L1Md_F2	LINE	L1	chr8	123915634	123915636	-	ENSMUST00000213089.1,ENSMUSG00000039509.8	Nup133	ENSMUSG00000039509.8	ENSMUST00000213089.1	protein_coding	chr8:123911787-123915635
chr8	124020981	124021012	+	GC_rich	Low_complexity	Low_complexity	chr8	124021007	124021009	-	ENSMUST00000093039.5,ENSMUSG00000038697.15	Taf5l	ENSMUSG00000038697.15	ENSMUST00000093039.5	protein_coding	chr8:123996318-124021008
chr8	124231380	124231496	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr8	124231390	124231392	+	ENSMUST00000034458.8,ENSMUSG00000089704.9	Galnt2	ENSMUSG00000089704.9	ENSMUST00000034458.8	protein_coding	chr8:124231391-124345722
chr8	124306266	124306597	+	MTEa	LTR	ERVL-MaLR	chr8	124306506	124306508	-	ENSMUST00000162325.1,ENSMUSG00000089745.1	1810008B01Rik	ENSMUSG00000089745.1	ENSMUST00000162325.1	antisense	chr8:124305132-124306507
chr8	124357237	124357309	+	U4	snRNA	snRNA	chr8	124357237	124357239	+	ENSMUST00000082730.1,ENSMUSG00000064664.1	Gm24459	ENSMUSG00000064664.1	ENSMUST00000082730.1	snRNA	chr8:124357238-124357323
chr8	124375109	124375135	+	(CA)n	Simple_repeat	Simple_repeat	chr8	124375110	124375112	-	ENSMUST00000140126.1,ENSMUSG00000050751.14	Pgbd5	ENSMUSG00000050751.14	ENSMUST00000140126.1	protein_coding	chr8:124371885-124375111
chr8	124678755	124678975	-	B3	SINE	B2	chr8	124678947	124678949	-	ENSMUST00000140350.1,ENSMUSG00000037300.19	Ttc13	ENSMUSG00000037300.19	ENSMUST00000140350.1	protein_coding	chr8:124674100-124678948
chr8	124793045	124793094	+	GC_rich	Low_complexity	Low_complexity	chr8	124793091	124793093	+	ENSMUST00000041106.8,ENSMUSG00000036913.15	Trim67	ENSMUSG00000036913.15	ENSMUST00000041106.8	protein_coding	chr8:124793092-124834702
chr8	124793045	124793094	+	GC_rich	Low_complexity	Low_complexity	chr8	124793091	124793093	+	ENSMUST00000167588.8,ENSMUSG00000036913.15	Trim67	ENSMUSG00000036913.15	ENSMUST00000167588.8	protein_coding	chr8:124793092-124834704
chr8	124793045	124793094	+	GC_rich	Low_complexity	Low_complexity	chr8	124793091	124793093	+	ENSMUST00000211867.1,ENSMUSG00000036913.15	Trim67	ENSMUSG00000036913.15	ENSMUST00000211867.1	protein_coding	chr8:124793092-124834713
chr8	124887576	124887639	+	ID4_	SINE	ID	chr8	124887628	124887630	+	ENSMUST00000159864.1,ENSMUSG00000031985.9	Gnpat	ENSMUSG00000031985.9	ENSMUST00000159864.1	protein_coding	chr8:124887629-124889618
chr8	124899988	124900134	+	B1_Mus2	SINE	Alu	chr8	124900129	124900131	-	ENSMUST00000213052.1,ENSMUSG00000110706.1	Gm45709	ENSMUSG00000110706.1	ENSMUST00000213052.1	antisense	chr8:124897894-124900130
chr8	125054155	125054208	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125054194	125054196	+	ENSMUST00000098311.10,ENSMUSG00000043051.17	Disc1	ENSMUSG00000043051.17	ENSMUST00000098311.10	protein_coding	chr8:125054195-125261151
chr8	125054155	125054208	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125054194	125054196	+	ENSMUST00000075730.10,ENSMUSG00000043051.17	Disc1	ENSMUSG00000043051.17	ENSMUST00000075730.10	protein_coding	chr8:125054195-125261151
chr8	125054155	125054208	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125054194	125054196	+	ENSMUST00000074562.10,ENSMUSG00000043051.17	Disc1	ENSMUSG00000043051.17	ENSMUST00000074562.10	protein_coding	chr8:125054195-125261151
chr8	125054155	125054208	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125054194	125054196	+	ENSMUST00000115885.8,ENSMUSG00000043051.17	Disc1	ENSMUSG00000043051.17	ENSMUST00000115885.8	protein_coding	chr8:125054195-125261151
chr8	125054155	125054208	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125054194	125054196	+	ENSMUST00000118942.7,ENSMUSG00000043051.17	Disc1	ENSMUSG00000043051.17	ENSMUST00000118942.7	protein_coding	chr8:125054195-125261858
chr8	125054155	125054208	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125054194	125054196	+	ENSMUST00000117658.7,ENSMUSG00000043051.17	Disc1	ENSMUSG00000043051.17	ENSMUST00000117658.7	protein_coding	chr8:125054195-125261858
chr8	125063966	125064044	-	IMPB_01	Satellite	Satellite	chr8	125064014	125064016	+	ENSMUST00000116866.1,ENSMUSG00000080516.1	Gm22197	ENSMUSG00000080516.1	ENSMUST00000116866.1	miRNA	chr8:125064015-125064072
chr8	125569754	125569887	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125569755	125569757	-	ENSMUST00000212168.1,ENSMUSG00000001995.9	Sipa1l2	ENSMUSG00000001995.9	ENSMUST00000212168.1	protein_coding	chr8:125418074-125569756
chr8	125569754	125569887	+	(CCG)n	Simple_repeat	Simple_repeat	chr8	125569807	125569809	-	ENSMUST00000212987.1,ENSMUSG00000001995.9	Sipa1l2	ENSMUSG00000001995.9	ENSMUST00000212987.1	protein_coding	chr8:125418076-125569808
chr8	125729767	125730147	+	MTEa	LTR	ERVL-MaLR	chr8	125729962	125729964	+	ENSMUST00000146055.7,ENSMUSG00000031851.14	Ntpcr	ENSMUSG00000031851.14	ENSMUST00000146055.7	protein_coding	chr8:125729963-125745299
chr8	125729767	125730147	+	MTEa	LTR	ERVL-MaLR	chr8	125730027	125730029	+	ENSMUST00000143504.7,ENSMUSG00000031851.14	Ntpcr	ENSMUSG00000031851.14	ENSMUST00000143504.7	protein_coding	chr8:125730028-125747809
chr8	125729767	125730147	+	MTEa	LTR	ERVL-MaLR	chr8	125730031	125730033	+	ENSMUST00000151172.7,ENSMUSG00000031851.14	Ntpcr	ENSMUSG00000031851.14	ENSMUST00000151172.7	protein_coding	chr8:125730032-125738136
chr8	125774085	125774237	-	B3	SINE	B2	chr8	125774127	125774129	-	ENSMUST00000119305.2,ENSMUSG00000060212.13	Pcnx2	ENSMUSG00000060212.13	ENSMUST00000119305.2	protein_coding	chr8:125751511-125774128
chr8	125995135	125995170	+	(TC)n	Simple_repeat	Simple_repeat	chr8	125995169	125995171	+	ENSMUST00000046765.9,ENSMUSG00000033998.9	Kcnk1	ENSMUSG00000033998.9	ENSMUST00000046765.9	protein_coding	chr8:125995170-126030685
chr8	126046625	126047160	+	MT2B2	LTR	ERVL	chr8	126046807	126046809	-	ENSMUST00000212178.1,ENSMUSG00000110698.1	Gm45875	ENSMUSG00000110698.1	ENSMUST00000212178.1	antisense	chr8:126029248-126046808
chr8	127064259	127064296	+	GC_rich	Low_complexity	Low_complexity	chr8	127064258	127064260	+	ENSMUST00000159141.7,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000159141.7	protein_coding	chr8:127064259-127277105
chr8	127064259	127064296	+	GC_rich	Low_complexity	Low_complexity	chr8	127064258	127064260	+	ENSMUST00000159818.1,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000159818.1	protein_coding	chr8:127064259-127370372
chr8	127064259	127064296	+	GC_rich	Low_complexity	Low_complexity	chr8	127064294	127064296	+	ENSMUST00000026921.12,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000026921.12	protein_coding	chr8:127064295-127610805
chr8	127064259	127064296	+	GC_rich	Low_complexity	Low_complexity	chr8	127064294	127064296	+	ENSMUST00000162665.7,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000162665.7	protein_coding	chr8:127064295-127610805
chr8	127299324	127299720	+	RLTR10A	LTR	ERVK	chr8	127299584	127299586	+	ENSMUST00000160717.7,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000160717.7	protein_coding	chr8:127299585-127402577
chr8	127299324	127299720	+	RLTR10A	LTR	ERVK	chr8	127299611	127299613	+	ENSMUST00000162456.7,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000162456.7	protein_coding	chr8:127299612-127433144
chr8	127579517	127579881	+	ORR1D2	LTR	ERVL-MaLR	chr8	127579723	127579725	+	ENSMUST00000159940.1,ENSMUSG00000025812.17	Pard3	ENSMUSG00000025812.17	ENSMUST00000159940.1	protein_coding	chr8:127579724-127610848
chr8	127597706	127597795	+	5S	rRNA	rRNA	chr8	127597705	127597707	+	ENSMUST00000157955.1,ENSMUSG00000088580.1	Gm22968	ENSMUSG00000088580.1	ENSMUST00000157955.1	rRNA	chr8:127597706-127597823
chr8	128278207	128278627	+	RMER15	LTR	ERVL	chr8	128278224	128278226	-	ENSMUST00000184910.1,ENSMUSG00000099326.1	Mir21c	ENSMUSG00000099326.1	ENSMUST00000184910.1	miRNA	chr8:128278148-128278225
chr8	128359203	128359264	+	CT-rich	Low_complexity	Low_complexity	chr8	128359240	128359242	+	ENSMUST00000122574.1,ENSMUSG00000084523.1	Mir1903	ENSMUSG00000084523.1	ENSMUST00000122574.1	miRNA	chr8:128359241-128359320
chr8	128650996	128651103	+	U6	snRNA	snRNA	chr8	128650996	128650998	+	ENSMUST00000101915.1,ENSMUSG00000075864.1	Gm26002	ENSMUSG00000075864.1	ENSMUST00000101915.1	snRNA	chr8:128650997-128651103
chr8	129017832	129017898	+	Lx10	LINE	L1	chr8	129017889	129017891	+	ENSMUST00000104350.1,ENSMUSG00000077538.1	Gm22545	ENSMUSG00000077538.1	ENSMUST00000104350.1	snoRNA	chr8:129017890-129018021
chr8	129113417	129113483	-	Lx10	LINE	L1	chr8	129113425	129113427	-	ENSMUST00000104583.1,ENSMUSG00000077771.1	Gm22374	ENSMUSG00000077771.1	ENSMUST00000104583.1	snoRNA	chr8:129113295-129113426
chr8	129117738	129124326	-	L1Md_T	LINE	L1	chr8	129118040	129118042	+	ENSMUST00000108744.7,ENSMUSG00000056018.14	Ccdc7b	ENSMUSG00000056018.14	ENSMUST00000108744.7	protein_coding	chr8:129118041-129183732
chr8	129131657	129132113	-	ERVB5_2-LTR_MM	LTR	ERVK	chr8	129131660	129131662	-	ENSMUST00000108743.1,ENSMUSG00000078840.1	Gm10999	ENSMUSG00000078840.1	ENSMUST00000108743.1	protein_coding	chr8:129129097-129131661
chr8	129138665	129144493	-	L1Md_T	LINE	L1	chr8	129144115	129144117	+	ENSMUST00000189055.1,ENSMUSG00000056018.14	Ccdc7b	ENSMUSG00000056018.14	ENSMUST00000189055.1	protein_coding	chr8:129144116-129183732
chr8	129221162	129222280	-	MurSatRep1	Unknown	Unknown	chr8	129221949	129221951	-	ENSMUST00000079272.12,ENSMUSG00000071302.10	2610044O15Rik8	ENSMUSG00000071302.10	ENSMUST00000079272.12	protein_coding	chr8:129217724-129221950
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3000921	3000923	+	ENSMUST00000151376.2,ENSMUSG00000091028.1	Gm10722	ENSMUSG00000091028.1	ENSMUST00000151376.2	protein_coding	chr9:3000922-3002330
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3003345	3003347	+	ENSMUST00000177722.7,ENSMUSG00000096385.7	Gm11168	ENSMUSG00000096385.7	ENSMUST00000177722.7	protein_coding	chr9:3003346-3005194
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3003579	3003581	+	ENSMUST00000178077.1,ENSMUSG00000096385.7	Gm11168	ENSMUSG00000096385.7	ENSMUST00000178077.1	protein_coding	chr9:3003580-3005194
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3004456	3004458	+	ENSMUST00000178348.1,ENSMUSG00000096385.7	Gm11168	ENSMUSG00000096385.7	ENSMUST00000178348.1	protein_coding	chr9:3004457-3005194
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3005158	3005160	+	ENSMUST00000179881.1,ENSMUSG00000096385.7	Gm11168	ENSMUSG00000096385.7	ENSMUST00000179881.1	protein_coding	chr9:3005159-3006948
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3013139	3013141	+	ENSMUST00000143083.2,ENSMUSG00000096519.1	Gm10721	ENSMUSG00000096519.1	ENSMUST00000143083.2	protein_coding	chr9:3013140-3014344
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3018083	3018085	-	ENSMUST00000181242.1,ENSMUSG00000097312.1	Gm26870	ENSMUSG00000097312.1	ENSMUST00000181242.1	lincRNA	chr9:3000282-3018084
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3015653	3015655	+	ENSMUST00000099050.3,ENSMUSG00000074564.3	Gm10720	ENSMUSG00000074564.3	ENSMUST00000099050.3	protein_coding	chr9:3015654-3017210
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3017407	3017409	+	ENSMUST00000099049.3,ENSMUSG00000095547.1	Gm10719	ENSMUSG00000095547.1	ENSMUST00000099049.3	protein_coding	chr9:3017408-3019022
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3018752	3018754	+	ENSMUST00000179272.1,ENSMUSG00000095547.1	Gm10719	ENSMUSG00000095547.1	ENSMUST00000179272.1	protein_coding	chr9:3018753-3020891
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3020154	3020156	+	ENSMUST00000099047.3,ENSMUSG00000095547.1	Gm10719	ENSMUSG00000095547.1	ENSMUST00000099047.3	protein_coding	chr9:3020155-3021593
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3023546	3023548	+	ENSMUST00000099046.3,ENSMUSG00000095186.1	Gm10718	ENSMUSG00000095186.1	ENSMUST00000099046.3	protein_coding	chr9:3023547-3025218
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3025416	3025418	+	ENSMUST00000075573.6,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000075573.6	protein_coding	chr9:3025417-3026387
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3026150	3026152	+	ENSMUST00000177601.1,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000177601.1	protein_coding	chr9:3026151-3028494
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3027522	3027524	+	ENSMUST00000179982.1,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000179982.1	protein_coding	chr9:3027523-3028728
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3027522	3027524	+	ENSMUST00000177875.7,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000177875.7	protein_coding	chr9:3027523-3029431
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3029194	3029196	+	ENSMUST00000099051.10,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000099051.10	protein_coding	chr9:3029195-3031071
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3030336	3030338	+	ENSMUST00000099042.3,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000099042.3	protein_coding	chr9:3030337-3031071
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3030567	3030569	+	ENSMUST00000179264.1,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000179264.1	protein_coding	chr9:3030568-3032588
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3038309	3038311	-	ENSMUST00000181572.1,ENSMUSG00000097312.1	Gm26870	ENSMUSG00000097312.1	ENSMUST00000181572.1	lincRNA	chr9:3017875-3038310
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3038312	3038314	-	ENSMUST00000181957.1,ENSMUSG00000097312.1	Gm26870	ENSMUSG00000097312.1	ENSMUST00000181957.1	lincRNA	chr9:3024048-3038313
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3032084	3032086	+	ENSMUST00000099056.3,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000099056.3	protein_coding	chr9:3032085-3032822
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3032084	3032086	+	ENSMUST00000179839.7,ENSMUSG00000095891.7	Gm10717	ENSMUSG00000095891.7	ENSMUST00000179839.7	protein_coding	chr9:3032085-3033289
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3034598	3034600	+	ENSMUST00000178641.1,ENSMUSG00000096736.1	Gm17535	ENSMUSG00000096736.1	ENSMUST00000178641.1	protein_coding	chr9:3034599-3035805
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3036876	3036878	+	ENSMUST00000155807.2,ENSMUSG00000096201.1	Gm10715	ENSMUSG00000096201.1	ENSMUST00000155807.2	protein_coding	chr9:3036877-3037848
chr9	3000002	3038419	-	GSAT_MM	Satellite	Satellite	chr9	3037110	3037112	+	ENSMUST00000177969.1,ENSMUSG00000096201.1	Gm10715	ENSMUSG00000096201.1	ENSMUST00000177969.1	protein_coding	chr9:3037111-3038316
chr9	3334707	3335338	-	Lx9	LINE	L1	chr9	3335139	3335141	+	ENSMUST00000212294.1,ENSMUSG00000025899.14	Alkbh8	ENSMUSG00000025899.14	ENSMUST00000212294.1	protein_coding	chr9:3335140-3386175
chr9	3338420	3338448	+	AT_rich	Low_complexity	Low_complexity	chr9	3338444	3338446	+	ENSMUST00000165105.1,ENSMUSG00000025899.14	Alkbh8	ENSMUSG00000025899.14	ENSMUST00000165105.1	protein_coding	chr9:3338445-3385842
chr9	3376617	3379584	-	L1_Mus2	LINE	L1	chr9	3379206	3379208	+	ENSMUST00000212955.1,ENSMUSG00000025899.14	Alkbh8	ENSMUSG00000025899.14	ENSMUST00000212955.1	protein_coding	chr9:3379207-3387837
chr9	3403479	3403663	-	B2_Mm2	SINE	B2	chr9	3403591	3403593	+	ENSMUST00000027027.6,ENSMUSG00000025898.6	Cwf19l2	ENSMUSG00000025898.6	ENSMUST00000027027.6	protein_coding	chr9:3403592-3479236
chr9	3440558	3440668	-	B1F	SINE	Alu	chr9	3440562	3440564	+	ENSMUST00000212101.1,ENSMUSG00000025898.6	Cwf19l2	ENSMUSG00000025898.6	ENSMUST00000212101.1	protein_coding	chr9:3440563-3450486
chr9	4271112	4271237	+	(TA)n	Simple_repeat	Simple_repeat	chr9	4271236	4271238	-	ENSMUST00000116861.1,ENSMUSG00000080511.1	Gm22195	ENSMUSG00000080511.1	ENSMUST00000116861.1	miRNA	chr9:4271130-4271237
chr9	4370988	4371380	-	MTB	LTR	ERVL-MaLR	chr9	4371334	4371336	-	ENSMUST00000174981.2,ENSMUSG00000094086.1	Gm23992	ENSMUSG00000094086.1	ENSMUST00000174981.2	miRNA	chr9:4371269-4371335
chr9	5796756	5796819	-	MER130	Unknown	Unknown	chr9	5796778	5796780	+	ENSMUST00000213873.1,ENSMUSG00000110927.1	Gm48506	ENSMUSG00000110927.1	ENSMUST00000213873.1	processed_pseudogene	chr9:5796779-5797033
chr9	6956687	6956968	+	L1M2	LINE	L1	chr9	6956688	6956690	-	ENSMUST00000152934.1,ENSMUSG00000047193.16	Dync2h1	ENSMUSG00000047193.16	ENSMUST00000152934.1	protein_coding	chr9:6940585-6956689
chr9	8900363	8900428	+	C-rich	Low_complexity	Low_complexity	chr9	8900418	8900420	+	ENSMUST00000151080.1,ENSMUSG00000031870.16	Pgr	ENSMUSG00000031870.16	ENSMUST00000151080.1	protein_coding	chr9:8900419-8948607
chr9	9260651	9260854	+	B3A	SINE	B2	chr9	9260682	9260684	+	ENSMUST00000150263.2,ENSMUSG00000085253.3	Gm16833	ENSMUSG00000085253.3	ENSMUST00000150263.2	antisense	chr9:9260683-9260883
chr9	9300463	9301600	+	MLTR25A	LTR	ERVK	chr9	9301390	9301392	+	ENSMUST00000157451.1,ENSMUSG00000088076.1	Gm22815	ENSMUSG00000088076.1	ENSMUST00000157451.1	snRNA	chr9:9301391-9301452
chr9	9430914	9437319	+	L1_Mus2	LINE	L1	chr9	9434591	9434593	+	ENSMUST00000217395.1,ENSMUSG00000111317.1	Gm47333	ENSMUSG00000111317.1	ENSMUST00000217395.1	processed_pseudogene	chr9:9434592-9434893
chr9	9894335	9894444	+	Lx8	LINE	L1	chr9	9894430	9894432	+	ENSMUST00000183808.1,ENSMUSG00000098408.1	Mir6237	ENSMUSG00000098408.1	ENSMUST00000183808.1	miRNA	chr9:9894431-9894521
chr9	10290276	10290793	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr9	10290586	10290588	-	ENSMUST00000178287.1,ENSMUSG00000093959.1	Gm24496	ENSMUSG00000093959.1	ENSMUST00000178287.1	miRNA	chr9:10290478-10290587
chr9	10294845	10295362	+	ERVB4_1B-LTR_MM	LTR	ERVK	chr9	10295155	10295157	-	ENSMUST00000179931.1,ENSMUSG00000096815.1	Gm25086	ENSMUSG00000096815.1	ENSMUST00000179931.1	miRNA	chr9:10295047-10295156
chr9	11102187	11102572	+	RLTR9E	LTR	ERVK	chr9	11102512	11102514	+	ENSMUST00000216068.1,ENSMUSG00000110951.1	Gm47001	ENSMUSG00000110951.1	ENSMUST00000216068.1	lincRNA	chr9:11102513-11119398
chr9	12780165	12780254	+	5S	rRNA	rRNA	chr9	12780164	12780166	+	ENSMUST00000158852.1,ENSMUSG00000089477.1	Gm25365	ENSMUSG00000089477.1	ENSMUST00000158852.1	rRNA	chr9:12780165-12780285
chr9	13105745	13106082	-	IAPLTR3	LTR	ERVK	chr9	13105857	13105859	-	ENSMUST00000215337.1,ENSMUSG00000111830.1	4930568E12Rik	ENSMUSG00000111830.1	ENSMUST00000215337.1	lincRNA	chr9:13091256-13105858
chr9	13105745	13106082	-	IAPLTR3	LTR	ERVK	chr9	13105854	13105856	-	ENSMUST00000216694.1,ENSMUSG00000111830.1	4930568E12Rik	ENSMUSG00000111830.1	ENSMUST00000216694.1	lincRNA	chr9:13091267-13105855
chr9	13105745	13106082	-	IAPLTR3	LTR	ERVK	chr9	13106012	13106014	+	ENSMUST00000214246.1,ENSMUSG00000111285.1	Gm47051	ENSMUSG00000111285.1	ENSMUST00000214246.1	lincRNA	chr9:13106013-13136998
chr9	13275515	13275622	+	U6	snRNA	snRNA	chr9	13275515	13275517	+	ENSMUST00000179879.1,ENSMUSG00000095068.1	Gm26189	ENSMUSG00000095068.1	ENSMUST00000179879.1	snRNA	chr9:13275516-13275622
chr9	13431152	13431514	+	ORR1B1	LTR	ERVL-MaLR	chr9	13431360	13431362	+	ENSMUST00000071254.6,ENSMUSG00000031802.9	Phxr4	ENSMUSG00000031802.9	ENSMUST00000071254.6	TEC	chr9:13431361-13432736
chr9	13431152	13431514	+	ORR1B1	LTR	ERVL-MaLR	chr9	13431360	13431362	+	ENSMUST00000216590.1,ENSMUSG00000031802.9	Phxr4	ENSMUSG00000031802.9	ENSMUST00000216590.1	TEC	chr9:13431361-13432751
chr9	13868666	13868761	-	PB1D7	SINE	Alu	chr9	13868705	13868707	+	ENSMUST00000216866.1,ENSMUSG00000111012.1	Gm7588	ENSMUSG00000111012.1	ENSMUST00000216866.1	processed_pseudogene	chr9:13868706-13869276
chr9	14089375	14089657	+	L1MA5	LINE	L1	chr9	14089619	14089621	+	ENSMUST00000216531.1,ENSMUSG00000111489.1	1700019J19Rik	ENSMUSG00000111489.1	ENSMUST00000216531.1	lincRNA	chr9:14089620-14118301
chr9	14095136	14101998	-	L1Md_T	LINE	L1	chr9	14101963	14101965	+	ENSMUST00000213583.1,ENSMUSG00000111489.1	1700019J19Rik	ENSMUSG00000111489.1	ENSMUST00000213583.1	lincRNA	chr9:14101964-14109550
chr9	14108120	14108295	+	MIRb	SINE	MIR	chr9	14108122	14108124	-	ENSMUST00000217369.1,ENSMUSG00000111479.1	Gm47559	ENSMUSG00000111479.1	ENSMUST00000217369.1	lincRNA	chr9:14107054-14108123
chr9	14321413	14321670	+	B4A	SINE	B4	chr9	14321654	14321656	+	ENSMUST00000208142.1,ENSMUSG00000032009.8	Sesn3	ENSMUSG00000032009.8	ENSMUST00000208142.1	protein_coding	chr9:14321655-14323569
chr9	14808035	14808214	-	MTC	LTR	ERVL-MaLR	chr9	14808039	14808041	-	ENSMUST00000216810.1,ENSMUSG00000111817.1	Gm47154	ENSMUSG00000111817.1	ENSMUST00000216810.1	processed_pseudogene	chr9:14807774-14808040
chr9	14903921	14904010	+	MIR3	SINE	MIR	chr9	14903948	14903950	-	ENSMUST00000117620.7,ENSMUSG00000031933.17	Izumo1r	ENSMUSG00000031933.17	ENSMUST00000117620.7	protein_coding	chr9:14893049-14903949
chr9	14903921	14904010	+	MIR3	SINE	MIR	chr9	14903931	14903933	-	ENSMUST00000034409.13,ENSMUSG00000031933.17	Izumo1r	ENSMUSG00000031933.17	ENSMUST00000034409.13	protein_coding	chr9:14900023-14903932
chr9	15211783	15211921	+	Lx7	LINE	L1	chr9	15211784	15211786	-	ENSMUST00000104196.1,ENSMUSG00000077384.1	Gm22658	ENSMUSG00000077384.1	ENSMUST00000104196.1	snRNA	chr9:15211631-15211785
chr9	15239000	15239056	+	C-rich	Low_complexity	Low_complexity	chr9	15239044	15239046	+	ENSMUST00000034413.7,ENSMUSG00000031937.7	Vstm5	ENSMUSG00000031937.7	ENSMUST00000034413.7	protein_coding	chr9:15239045-15259416
chr9	15272859	15272885	+	(CGTG)n	Simple_repeat	Simple_repeat	chr9	15272869	15272871	-	ENSMUST00000213356.1,ENSMUSG00000031935.9	Med17	ENSMUSG00000031935.9	ENSMUST00000213356.1	protein_coding	chr9:15270343-15272870
chr9	15289366	15289731	-	MTD	LTR	ERVL-MaLR	chr9	15289567	15289569	-	ENSMUST00000216077.1,ENSMUSG00000031938.15	4931406C07Rik	ENSMUSG00000031938.15	ENSMUST00000216077.1	protein_coding	chr9:15287406-15289568
chr9	15316098	15316243	+	B1_Mus1	SINE	Alu	chr9	15316205	15316207	+	ENSMUST00000214045.1,ENSMUSG00000031939.16	Taf1d	ENSMUSG00000031939.16	ENSMUST00000214045.1	protein_coding	chr9:15316206-15316947
chr9	15381306	15381806	-	RMER20B	LTR	ERVK	chr9	15381366	15381368	+	ENSMUST00000217087.1,ENSMUSG00000111763.1	Gm34973	ENSMUSG00000111763.1	ENSMUST00000217087.1	lincRNA	chr9:15381367-15387425
chr9	15505461	15505603	-	B3A	SINE	B2	chr9	15505486	15505488	+	ENSMUST00000045620.9,ENSMUSG00000058173.12	Smco4	ENSMUSG00000058173.12	ENSMUST00000045620.9	protein_coding	chr9:15505487-15545260
chr9	15520814	15520875	+	CT-rich	Low_complexity	Low_complexity	chr9	15520858	15520860	+	ENSMUST00000178999.2,ENSMUSG00000058173.12	Smco4	ENSMUSG00000058173.12	ENSMUST00000178999.2	protein_coding	chr9:15520859-15545260
chr9	16435330	16435439	+	MIRb	SINE	MIR	chr9	16435394	16435396	-	ENSMUST00000215220.1,ENSMUSG00000111652.1	Gm48726	ENSMUSG00000111652.1	ENSMUST00000215220.1	TEC	chr9:16432867-16435395
chr9	17523909	17524073	+	L3	LINE	CR1	chr9	17523978	17523980	+	ENSMUST00000214184.1,ENSMUSG00000111534.1	Gm48846	ENSMUSG00000111534.1	ENSMUST00000214184.1	processed_pseudogene	chr9:17523979-17524245
chr9	17714101	17719303	+	L1Md_T	LINE	L1	chr9	17719062	17719064	+	ENSMUST00000216550.1,ENSMUSG00000111506.1	Gm48848	ENSMUSG00000111506.1	ENSMUST00000216550.1	processed_pseudogene	chr9:17719063-17719173
chr9	18082688	18088101	-	L1Md_T	LINE	L1	chr9	18088044	18088046	+	ENSMUST00000216330.1,ENSMUSG00000111728.1	Gm48850	ENSMUSG00000111728.1	ENSMUST00000216330.1	processed_pseudogene	chr9:18088045-18088356
chr9	18093522	18100195	-	L1_Mus3	LINE	L1	chr9	18097954	18097956	+	ENSMUST00000215459.1,ENSMUSG00000111743.1	Gm48856	ENSMUSG00000111743.1	ENSMUST00000215459.1	unprocessed_pseudogene	chr9:18097955-18098280
chr9	18093522	18100195	-	L1_Mus3	LINE	L1	chr9	18098261	18098263	-	ENSMUST00000199509.1,ENSMUSG00000105805.1	Gm44498	ENSMUSG00000105805.1	ENSMUST00000199509.1	miRNA	chr9:18098152-18098262
chr9	18391633	18394025	+	Lx	LINE	L1	chr9	18392122	18392124	-	ENSMUST00000001826.14,ENSMUSG00000043943.14	Naalad2	ENSMUSG00000043943.14	ENSMUST00000001826.14	protein_coding	chr9:18323021-18392123
chr9	18402857	18403242	-	MT2C_Mm	LTR	ERVL	chr9	18402971	18402973	-	ENSMUST00000172116.7,ENSMUSG00000043943.14	Naalad2	ENSMUSG00000043943.14	ENSMUST00000172116.7	protein_coding	chr9:18385058-18402972
chr9	18402857	18403242	-	MT2C_Mm	LTR	ERVL	chr9	18402973	18402975	-	ENSMUST00000101453.9,ENSMUSG00000043943.14	Naalad2	ENSMUSG00000043943.14	ENSMUST00000101453.9	protein_coding	chr9:18385829-18402974
chr9	18402857	18403242	-	MT2C_Mm	LTR	ERVL	chr9	18402994	18402996	-	ENSMUST00000164081.7,ENSMUSG00000043943.14	Naalad2	ENSMUSG00000043943.14	ENSMUST00000164081.7	protein_coding	chr9:18388074-18402995
chr9	18402857	18403242	-	MT2C_Mm	LTR	ERVL	chr9	18402975	18402977	-	ENSMUST00000172200.1,ENSMUSG00000043943.14	Naalad2	ENSMUSG00000043943.14	ENSMUST00000172200.1	protein_coding	chr9:18388180-18402976
chr9	18404306	18404619	+	ORR1A2	LTR	ERVL-MaLR	chr9	18404417	18404419	+	ENSMUST00000164441.1,ENSMUSG00000074502.4	Ubtfl1	ENSMUSG00000074502.4	ENSMUST00000164441.1	protein_coding	chr9:18404418-18411502
chr9	18404306	18404619	+	ORR1A2	LTR	ERVL-MaLR	chr9	18404419	18404421	+	ENSMUST00000169398.2,ENSMUSG00000074502.4	Ubtfl1	ENSMUSG00000074502.4	ENSMUST00000169398.2	protein_coding	chr9:18404420-18413177
chr9	18430405	18430821	+	MTB_Mm	LTR	ERVL-MaLR	chr9	18430653	18430655	+	ENSMUST00000213777.1,ENSMUSG00000047508.9	Mbd3l2	ENSMUSG00000047508.9	ENSMUST00000213777.1	protein_coding	chr9:18430654-18446316
chr9	18460266	18460437	+	(TA)n	Simple_repeat	Simple_repeat	chr9	18460292	18460294	-	ENSMUST00000174973.1,ENSMUSG00000092714.1	Gm22854	ENSMUSG00000092714.1	ENSMUST00000174973.1	miRNA	chr9:18460210-18460293
chr9	18679128	18679220	+	U6	snRNA	snRNA	chr9	18679127	18679129	+	ENSMUST00000158652.1,ENSMUSG00000089277.1	Gm24546	ENSMUSG00000089277.1	ENSMUST00000158652.1	snRNA	chr9:18679128-18679229
chr9	18932922	18933150	+	MTE-int	LTR	ERVL-MaLR	chr9	18932980	18932982	-	ENSMUST00000086496.4,ENSMUSG00000066914.4	Olfr831-ps1	ENSMUSG00000066914.4	ENSMUST00000086496.4	unprocessed_pseudogene	chr9:18931922-18932981
chr9	18970826	18971022	+	MTE-int	LTR	ERVL-MaLR	chr9	18970905	18970907	-	ENSMUST00000086493.3,ENSMUSG00000066912.3	Olfr833-ps1	ENSMUSG00000066912.3	ENSMUST00000086493.3	unprocessed_pseudogene	chr9:18969994-18970906
chr9	19154559	19154667	+	(CAAGG)n	Simple_repeat	Simple_repeat	chr9	19154559	19154561	-	ENSMUST00000211872.1,ENSMUSG00000110645.1	Olfr838-ps1	ENSMUSG00000110645.1	ENSMUST00000211872.1	unprocessed_pseudogene	chr9:19153584-19154560
chr9	19177115	19177404	-	Lx5	LINE	L1	chr9	19177311	19177313	-	ENSMUST00000212127.2,ENSMUSG00000110519.2	Olfr839-ps1	ENSMUSG00000110519.2	ENSMUST00000212127.2	protein_coding	chr9:19168407-19177312
chr9	19622012	19622152	+	LTR33C	LTR	ERVL	chr9	19622101	19622103	+	ENSMUST00000213725.1,ENSMUSG00000057551.10	Zfp317	ENSMUSG00000057551.10	ENSMUST00000213725.1	protein_coding	chr9:19622102-19648338
chr9	19622012	19622152	+	LTR33C	LTR	ERVL	chr9	19622127	19622129	+	ENSMUST00000208694.1,ENSMUSG00000057551.10	Zfp317	ENSMUSG00000057551.10	ENSMUST00000208694.1	protein_coding	chr9:19622128-19649731
chr9	19836823	19843116	-	L1Md_F2	LINE	L1	chr9	19842072	19842074	+	ENSMUST00000212838.1,ENSMUSG00000110511.1	Gm45699	ENSMUSG00000110511.1	ENSMUST00000212838.1	antisense	chr9:19842073-19872536
chr9	20035100	20035483	+	MTA_Mm	LTR	ERVL-MaLR	chr9	20035153	20035155	+	ENSMUST00000175218.2,ENSMUSG00000096830.1	Gm26231	ENSMUSG00000096830.1	ENSMUST00000175218.2	miRNA	chr9:20035154-20035220
chr9	20173086	20173226	+	U1	snRNA	snRNA	chr9	20173086	20173088	+	ENSMUST00000157618.1,ENSMUSG00000088243.1	Gm25914	ENSMUSG00000088243.1	ENSMUST00000157618.1	snRNA	chr9:20173087-20173239
chr9	20209204	20209351	-	U1	snRNA	snRNA	chr9	20209350	20209352	-	ENSMUST00000158891.1,ENSMUSG00000089516.1	Gm26290	ENSMUSG00000089516.1	ENSMUST00000158891.1	snRNA	chr9:20209207-20209351
chr9	20252792	20252892	-	U6	snRNA	snRNA	chr9	20252887	20252889	-	ENSMUST00000157611.1,ENSMUSG00000088236.1	Gm25425	ENSMUSG00000088236.1	ENSMUST00000157611.1	snRNA	chr9:20252793-20252888
chr9	20354636	20360102	+	L1Md_T	LINE	L1	chr9	20355645	20355647	-	ENSMUST00000214965.1,ENSMUSG00000045519.15	Zfp560	ENSMUSG00000045519.15	ENSMUST00000214965.1	protein_coding	chr9:20352581-20355646
chr9	20441321	20441460	-	MurSatRep1	Unknown	Unknown	chr9	20441373	20441375	-	ENSMUST00000160370.1,ENSMUSG00000063108.15	Zfp26	ENSMUSG00000063108.15	ENSMUST00000160370.1	protein_coding	chr9:20438299-20441374
chr9	20477865	20477978	+	U6	snRNA	snRNA	chr9	20477864	20477866	+	ENSMUST00000157997.1,ENSMUSG00000088622.1	Gm23316	ENSMUSG00000088622.1	ENSMUST00000157997.1	snRNA	chr9:20477865-20477978
chr9	20490791	20490868	-	ID4_	SINE	ID	chr9	20490804	20490806	-	ENSMUST00000164825.7,ENSMUSG00000059475.13	Zfp426	ENSMUSG00000059475.13	ENSMUST00000164825.7	protein_coding	chr9:20471176-20490805
chr9	20612417	20612603	+	B2_Mm1a	SINE	B2	chr9	20612484	20612486	-	ENSMUST00000181576.1,ENSMUSG00000097422.1	Gm26521	ENSMUSG00000097422.1	ENSMUST00000181576.1	lincRNA	chr9:20607766-20612485
chr9	20673103	20673251	+	B1_Mur4	SINE	Alu	chr9	20673130	20673132	-	ENSMUST00000215039.1,ENSMUSG00000032172.8	Olfm2	ENSMUSG00000032172.8	ENSMUST00000215039.1	protein_coding	chr9:20672332-20673131
chr9	20746278	20746427	+	C-rich	Low_complexity	Low_complexity	chr9	20746348	20746350	-	ENSMUST00000215999.1,ENSMUSG00000032172.8	Olfm2	ENSMUSG00000032172.8	ENSMUST00000215999.1	protein_coding	chr9:20667693-20746349
chr9	21165658	21165721	+	G-rich	Low_complexity	Low_complexity	chr9	21165713	21165715	+	ENSMUST00000039413.14,ENSMUSG00000032177.17	Pde4a	ENSMUSG00000032177.17	ENSMUST00000039413.14	protein_coding	chr9:21165714-21213248
chr9	21247691	21247733	+	(CA)n	Simple_repeat	Simple_repeat	chr9	21247712	21247714	+	ENSMUST00000215491.1,ENSMUSG00000111623.1	Gm48303	ENSMUSG00000111623.1	ENSMUST00000215491.1	TEC	chr9:21247713-21249606
chr9	21268003	21268133	+	B1_Mur4	SINE	Alu	chr9	21268077	21268079	+	ENSMUST00000217591.1,ENSMUSG00000002820.6	Atg4d	ENSMUSG00000002820.6	ENSMUST00000217591.1	protein_coding	chr9:21268078-21272518
chr9	21377056	21377247	-	B3	SINE	B2	chr9	21377125	21377127	+	ENSMUST00000214758.1,ENSMUSG00000032178.14	Ilf3	ENSMUSG00000032178.14	ENSMUST00000214758.1	protein_coding	chr9:21377126-21405090
chr9	21417864	21418022	-	ID_B1	SINE	B4	chr9	21417955	21417957	+	ENSMUST00000214900.2,ENSMUSG00000002825.8	Qtrt1	ENSMUSG00000002825.8	ENSMUST00000214900.2	protein_coding	chr9:21417956-21419366
chr9	21457103	21457183	-	PB1D10	SINE	Alu	chr9	21457106	21457108	+	ENSMUST00000172873.1,ENSMUSG00000033335.17	Dnm2	ENSMUSG00000033335.17	ENSMUST00000172873.1	protein_coding	chr9:21457107-21457570
chr9	21546906	21546987	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	21546912	21546914	+	ENSMUST00000115395.9,ENSMUSG00000032185.15	Carm1	ENSMUSG00000032185.15	ENSMUST00000115395.9	protein_coding	chr9:21546913-21589487
chr9	21546906	21546987	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	21546922	21546924	+	ENSMUST00000154049.7,ENSMUSG00000032185.15	Carm1	ENSMUSG00000032185.15	ENSMUST00000154049.7	protein_coding	chr9:21546923-21589467
chr9	21546906	21546987	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	21546922	21546924	+	ENSMUST00000115394.7,ENSMUSG00000032185.15	Carm1	ENSMUSG00000032185.15	ENSMUST00000115394.7	protein_coding	chr9:21546923-21589467
chr9	21546906	21546987	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	21546977	21546979	+	ENSMUST00000130032.7,ENSMUSG00000032185.15	Carm1	ENSMUSG00000032185.15	ENSMUST00000130032.7	protein_coding	chr9:21546978-21589467
chr9	21608323	21608626	-	ORR1E	LTR	ERVL-MaLR	chr9	21608326	21608328	-	ENSMUST00000217049.1,ENSMUSG00000111812.1	Gm7904	ENSMUSG00000111812.1	ENSMUST00000217049.1	processed_pseudogene	chr9:21607863-21608327
chr9	21613543	21613691	+	B1_Mus1	SINE	Alu	chr9	21613575	21613577	-	ENSMUST00000157853.1,ENSMUSG00000088478.1	Mir1946b	ENSMUSG00000088478.1	ENSMUST00000157853.1	miRNA	chr9:21613444-21613576
chr9	21616090	21616265	+	G-rich	Low_complexity	Low_complexity	chr9	21616168	21616170	+	ENSMUST00000034707.14,ENSMUSG00000032187.16	Smarca4	ENSMUSG00000032187.16	ENSMUST00000034707.14	protein_coding	chr9:21616169-21704217
chr9	21616090	21616265	+	G-rich	Low_complexity	Low_complexity	chr9	21616168	21616170	+	ENSMUST00000098948.9,ENSMUSG00000032187.16	Smarca4	ENSMUSG00000032187.16	ENSMUST00000098948.9	protein_coding	chr9:21616169-21704230
chr9	21616090	21616265	+	G-rich	Low_complexity	Low_complexity	chr9	21616263	21616265	+	ENSMUST00000174008.7,ENSMUSG00000032187.16	Smarca4	ENSMUSG00000032187.16	ENSMUST00000174008.7	protein_coding	chr9:21616264-21703366
chr9	21677891	21678118	-	LFSINE_Vert	SINE	tRNA	chr9	21677912	21677914	+	ENSMUST00000184017.1,ENSMUSG00000099192.1	Gm27373	ENSMUSG00000099192.1	ENSMUST00000184017.1	misc_RNA	chr9:21677913-21678096
chr9	21736092	21736282	+	B2_Mm1t	SINE	B2	chr9	21736106	21736108	+	ENSMUST00000217613.1,ENSMUSG00000032193.9	Ldlr	ENSMUSG00000032193.9	ENSMUST00000217613.1	protein_coding	chr9:21736107-21740086
chr9	21745234	21745369	+	B1_Mur2	SINE	Alu	chr9	21745322	21745324	+	ENSMUST00000214549.1,ENSMUSG00000032193.9	Ldlr	ENSMUSG00000032193.9	ENSMUST00000214549.1	protein_coding	chr9:21745323-21749914
chr9	21926914	21927098	+	ID_B1	SINE	B4	chr9	21927022	21927024	-	ENSMUST00000214569.1,ENSMUSG00000040883.17	Tmem205	ENSMUSG00000040883.17	ENSMUST00000214569.1	protein_coding	chr9:21921093-21927023
chr9	21938427	21938512	+	MIRc	SINE	MIR	chr9	21938452	21938454	+	ENSMUST00000188468.1,ENSMUSG00000040563.13	Plppr2	ENSMUSG00000040563.13	ENSMUST00000188468.1	protein_coding	chr9:21938453-21948017
chr9	21974154	21974293	+	RSINE1	SINE	B4	chr9	21974282	21974284	-	ENSMUST00000213558.1,ENSMUSG00000040146.9	Rgl3	ENSMUSG00000040146.9	ENSMUST00000213558.1	protein_coding	chr9:21971749-21974283
chr9	22005501	22005761	-	B4A	SINE	B4	chr9	22005567	22005569	+	ENSMUST00000214565.1,ENSMUSG00000003402.14	Prkcsh	ENSMUSG00000003402.14	ENSMUST00000214565.1	protein_coding	chr9:22005568-22009245
chr9	22071233	22071370	+	C-rich	Low_complexity	Low_complexity	chr9	22071258	22071260	-	ENSMUST00000213738.1,ENSMUSG00000111842.1	Gm49318	ENSMUSG00000111842.1	ENSMUST00000213738.1	protein_coding	chr9:22036380-22071259
chr9	22071233	22071370	+	C-rich	Low_complexity	Low_complexity	chr9	22071275	22071277	-	ENSMUST00000216916.1,ENSMUSG00000038895.16	Zfp653	ENSMUSG00000038895.16	ENSMUST00000216916.1	protein_coding	chr9:22055411-22071276
chr9	22071233	22071370	+	C-rich	Low_complexity	Low_complexity	chr9	22071344	22071346	-	ENSMUST00000043922.6,ENSMUSG00000038895.16	Zfp653	ENSMUSG00000038895.16	ENSMUST00000043922.6	protein_coding	chr9:22055460-22071345
chr9	22071233	22071370	+	C-rich	Low_complexity	Low_complexity	chr9	22071340	22071342	-	ENSMUST00000179605.8,ENSMUSG00000038895.16	Zfp653	ENSMUSG00000038895.16	ENSMUST00000179605.8	protein_coding	chr9:22055700-22071341
chr9	22104407	22104486	-	ID2	SINE	ID	chr9	22104444	22104446	+	ENSMUST00000216141.1,ENSMUSG00000001349.5	Cnn1	ENSMUSG00000001349.5	ENSMUST00000216141.1	protein_coding	chr9:22104445-22108138
chr9	22117561	22117848	-	MT2B2	LTR	ERVL	chr9	22117671	22117673	+	ENSMUST00000214165.1,ENSMUSG00000111856.1	6530413G14Rik	ENSMUSG00000111856.1	ENSMUST00000214165.1	processed_transcript	chr9:22117672-22137756
chr9	22167439	22167612	+	MurSatRep1	Unknown	Unknown	chr9	22167478	22167480	+	ENSMUST00000211082.2,ENSMUSG00000109765.2	Gm18227	ENSMUSG00000109765.2	ENSMUST00000211082.2	unprocessed_pseudogene	chr9:22167479-22170652
chr9	22197052	22197211	+	MurSatRep1	Unknown	Unknown	chr9	22197066	22197068	+	ENSMUST00000091508.4,ENSMUSG00000074472.10	Zfp872	ENSMUSG00000074472.10	ENSMUST00000091508.4	protein_coding	chr9:22197067-22200624
chr9	22208408	22208767	-	RLTR6-int	LTR	ERV1	chr9	22208545	22208547	-	ENSMUST00000167359.1,ENSMUSG00000090925.2	1810064F22Rik	ENSMUSG00000090925.2	ENSMUST00000167359.1	antisense	chr9:22207341-22208546
chr9	22213831	22214184	-	RLTR9A3B	LTR	ERVK	chr9	22213838	22213840	-	ENSMUST00000187399.1,ENSMUSG00000090925.2	1810064F22Rik	ENSMUSG00000090925.2	ENSMUST00000187399.1	antisense	chr9:22196963-22213839
chr9	22213831	22214184	-	RLTR9A3B	LTR	ERVK	chr9	22213859	22213861	-	ENSMUST00000188595.1,ENSMUSG00000090925.2	1810064F22Rik	ENSMUSG00000090925.2	ENSMUST00000188595.1	antisense	chr9:22206781-22213860
chr9	22228821	22229007	-	B2_Mm2	SINE	B2	chr9	22228977	22228979	+	ENSMUST00000213592.1,ENSMUSG00000111424.1	Gm48478	ENSMUSG00000111424.1	ENSMUST00000213592.1	TEC	chr9:22228978-22231302
chr9	22351080	22351479	+	ORR1C2	LTR	ERVL-MaLR	chr9	22351255	22351257	-	ENSMUST00000217010.1,ENSMUSG00000036777.8	Anln	ENSMUSG00000036777.8	ENSMUST00000217010.1	protein_coding	chr9:22334153-22351256
chr9	22454147	22454293	+	B1_Mus1	SINE	Alu	chr9	22454289	22454291	+	ENSMUST00000168332.1,ENSMUSG00000091159.1	Gm17545	ENSMUSG00000091159.1	ENSMUST00000168332.1	protein_coding	chr9:22454290-22462062
chr9	22468092	22468180	+	(CTG)n	Simple_repeat	Simple_repeat	chr9	22468169	22468171	-	ENSMUST00000217370.1,ENSMUSG00000032239.10	Rp9	ENSMUSG00000032239.10	ENSMUST00000217370.1	protein_coding	chr9:22453604-22468170
chr9	22468092	22468180	+	(CTG)n	Simple_repeat	Simple_repeat	chr9	22468177	22468179	-	ENSMUST00000214005.1,ENSMUSG00000032239.10	Rp9	ENSMUSG00000032239.10	ENSMUST00000214005.1	protein_coding	chr9:22466821-22468178
chr9	22468356	22468396	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	22468357	22468359	-	ENSMUST00000215715.1,ENSMUSG00000032239.10	Rp9	ENSMUSG00000032239.10	ENSMUST00000215715.1	protein_coding	chr9:22411047-22468358
chr9	22512252	22512648	+	MTA_Mm	LTR	ERVL-MaLR	chr9	22512456	22512458	+	ENSMUST00000152719.7,ENSMUSG00000035919.16	Bbs9	ENSMUSG00000035919.16	ENSMUST00000152719.7	protein_coding	chr9:22512457-22579509
chr9	22772762	22772835	-	U4	snRNA	snRNA	chr9	22772834	22772836	-	ENSMUST00000184937.1,ENSMUSG00000098940.1	Gm27639	ENSMUSG00000098940.1	ENSMUST00000184937.1	snRNA	chr9:22772751-22772835
chr9	23940163	23940350	-	MER45C	DNA	hAT-Tip100	chr9	23940341	23940343	-	ENSMUST00000214658.1,ENSMUSG00000110848.1	Gm47663	ENSMUSG00000110848.1	ENSMUST00000214658.1	lincRNA	chr9:23917102-23940342
chr9	24017394	24021079	+	L1Md_F	LINE	L1	chr9	24018158	24018160	-	ENSMUST00000215011.1,ENSMUSG00000111477.1	Gm47668	ENSMUSG00000111477.1	ENSMUST00000215011.1	processed_pseudogene	chr9:24017894-24018159
chr9	24487705	24488101	-	MTA_Mm	LTR	ERVL-MaLR	chr9	24487913	24487915	-	ENSMUST00000115277.8,ENSMUSG00000043067.15	Dpy19l1	ENSMUSG00000043067.15	ENSMUST00000115277.8	protein_coding	chr9:24411776-24487914
chr9	25089416	25089491	+	(GA)n	Simple_repeat	Simple_repeat	chr9	25089421	25089423	+	ENSMUST00000086238.2,ENSMUSG00000066810.2	Gm10181	ENSMUSG00000066810.2	ENSMUST00000086238.2	protein_coding	chr9:25089422-25089490
chr9	25752198	25758847	-	L1Md_T	LINE	L1	chr9	25757554	25757556	+	ENSMUST00000215068.1,ENSMUSG00000111416.1	Gm48331	ENSMUSG00000111416.1	ENSMUST00000215068.1	processed_pseudogene	chr9:25757555-25757825
chr9	25812741	25813228	-	MT2_Mm	LTR	ERVL	chr9	25812974	25812976	-	ENSMUST00000116704.1,ENSMUSG00000095069.1	Gm26190	ENSMUSG00000095069.1	ENSMUST00000116704.1	miRNA	chr9:25812855-25812975
chr9	25855659	25863214	-	MMERGLN-int	LTR	ERV1	chr9	25859651	25859653	-	ENSMUST00000216055.1,ENSMUSG00000110866.1	Gm48362	ENSMUSG00000110866.1	ENSMUST00000216055.1	lincRNA	chr9:25855315-25859652
chr9	26032519	26033963	+	L1_Mus1	LINE	L1	chr9	26033478	26033480	-	ENSMUST00000213586.1,ENSMUSG00000111240.1	Gm39312	ENSMUSG00000111240.1	ENSMUST00000213586.1	lincRNA	chr9:26028685-26033479
chr9	26386300	26386718	+	Lx8	LINE	L1	chr9	26386301	26386303	-	ENSMUST00000214282.1,ENSMUSG00000111124.1	Gm48373	ENSMUSG00000111124.1	ENSMUST00000214282.1	processed_pseudogene	chr9:26386019-26386302
chr9	26803693	26803733	+	C-rich	Low_complexity	Low_complexity	chr9	26803697	26803699	-	ENSMUST00000216272.1,ENSMUSG00000036395.15	Glb1l2	ENSMUSG00000036395.15	ENSMUST00000216272.1	protein_coding	chr9:26799596-26803698
chr9	26824122	26824458	-	Lx8b	LINE	L1	chr9	26824343	26824345	-	ENSMUST00000211353.1,ENSMUSG00000031966.7	Glb1l3	ENSMUSG00000031966.7	ENSMUST00000211353.1	protein_coding	chr9:26818036-26824344
chr9	27074349	27074502	-	RSINE1	SINE	B4	chr9	27074359	27074361	+	ENSMUST00000214270.1,ENSMUSG00000035024.16	Ncapd3	ENSMUSG00000035024.16	ENSMUST00000214270.1	protein_coding	chr9:27074360-27087417
chr9	27148611	27148826	+	B4A	SINE	B4	chr9	27148734	27148736	-	ENSMUST00000213170.1,ENSMUSG00000031990.15	Jam3	ENSMUSG00000031990.15	ENSMUST00000213170.1	protein_coding	chr9:27100131-27148735
chr9	27553349	27553702	+	RLTR30E_MM	LTR	ERV1	chr9	27553479	27553481	+	ENSMUST00000214666.1,ENSMUSG00000111694.1	Gm48901	ENSMUSG00000111694.1	ENSMUST00000214666.1	lincRNA	chr9:27553480-27554957
chr9	27611378	27611642	+	MTC	LTR	ERVL-MaLR	chr9	27611599	27611601	+	ENSMUST00000213123.1,ENSMUSG00000110745.1	Gm8106	ENSMUSG00000110745.1	ENSMUST00000213123.1	processed_pseudogene	chr9:27611600-27612122
chr9	27615881	27616356	+	MT2C_Mm	LTR	ERVL	chr9	27616184	27616186	+	ENSMUST00000213224.1,ENSMUSG00000110851.1	Gm48902	ENSMUSG00000110851.1	ENSMUST00000213224.1	lincRNA	chr9:27616185-27625898
chr9	28292712	28293047	-	MLT1B	LTR	ERVL-MaLR	chr9	28292747	28292749	+	ENSMUST00000199274.1,ENSMUSG00000106021.1	Gm44316	ENSMUSG00000106021.1	ENSMUST00000199274.1	miRNA	chr9:28292748-28292844
chr9	28661433	28661802	-	L1Md_F2	LINE	L1	chr9	28661628	28661630	+	ENSMUST00000126845.1,ENSMUSG00000062257.13	Opcml	ENSMUSG00000062257.13	ENSMUST00000126845.1	protein_coding	chr9:28661629-28675240
chr9	28953745	28954875	-	MTB_Mm-int	LTR	ERVL-MaLR	chr9	28954346	28954348	-	ENSMUST00000215483.1,ENSMUSG00000110741.1	Gm48091	ENSMUSG00000110741.1	ENSMUST00000215483.1	antisense	chr9:28794296-28954347
chr9	30291867	30291974	-	U6	snRNA	snRNA	chr9	30291973	30291975	-	ENSMUST00000179026.1,ENSMUSG00000096018.1	Gm26435	ENSMUSG00000096018.1	ENSMUST00000179026.1	snRNA	chr9:30291868-30291974
chr9	30752853	30752982	+	(TTCTCC)n	Simple_repeat	Simple_repeat	chr9	30752881	30752883	-	ENSMUST00000215919.1,ENSMUSG00000111249.1	Gm47717	ENSMUSG00000111249.1	ENSMUST00000215919.1	processed_pseudogene	chr9:30752621-30752882
chr9	31009934	31010354	-	RLTR41	LTR	ERV1	chr9	31010062	31010064	-	ENSMUST00000216803.1,ENSMUSG00000111673.1	Gm29724	ENSMUSG00000111673.1	ENSMUST00000216803.1	antisense	chr9:30985967-31010063
chr9	31103514	31103542	+	AT_rich	Low_complexity	Low_complexity	chr9	31103537	31103539	-	ENSMUST00000217404.1,ENSMUSG00000031995.9	St14	ENSMUSG00000031995.9	ENSMUST00000217404.1	protein_coding	chr9:31099989-31103538
chr9	31314712	31314908	-	B2_Mm2	SINE	B2	chr9	31314726	31314728	+	ENSMUST00000136144.1,ENSMUSG00000042496.18	Prdm10	ENSMUSG00000042496.18	ENSMUST00000136144.1	protein_coding	chr9:31314727-31330607
chr9	31392668	31392798	-	B1_Mus1	SINE	Alu	chr9	31392787	31392789	+	ENSMUST00000134528.1,ENSMUSG00000042185.14	Nfrkb	ENSMUSG00000042185.14	ENSMUST00000134528.1	protein_coding	chr9:31392788-31399198
chr9	31399171	31399219	+	GA-rich	Low_complexity	Low_complexity	chr9	31399218	31399220	+	ENSMUST00000128375.7,ENSMUSG00000042185.14	Nfrkb	ENSMUSG00000042185.14	ENSMUST00000128375.7	protein_coding	chr9:31399219-31421333
chr9	31439711	31439857	-	B1_Mm	SINE	Alu	chr9	31439766	31439768	-	ENSMUST00000213948.1,ENSMUSG00000111468.1	5033425B01Rik	ENSMUSG00000111468.1	ENSMUST00000213948.1	TEC	chr9:31438465-31439767
chr9	31677547	31678063	-	RLTR20A3_MM	LTR	ERVK	chr9	31678025	31678027	-	ENSMUST00000217207.1,ENSMUSG00000110853.1	Gm47436	ENSMUSG00000110853.1	ENSMUST00000217207.1	lincRNA	chr9:31676808-31678026
chr9	32067152	32067298	-	B1_Mus1	SINE	Alu	chr9	32067170	32067172	+	ENSMUST00000175161.2,ENSMUSG00000106368.1	Gm44453	ENSMUSG00000106368.1	ENSMUST00000175161.2	miRNA	chr9:32067171-32067296
chr9	32344349	32344415	+	C-rich	Low_complexity	Low_complexity	chr9	32344349	32344351	-	ENSMUST00000034533.6,ENSMUSG00000032034.6	Kcnj5	ENSMUSG00000032034.6	ENSMUST00000034533.6	protein_coding	chr9:32314707-32344350
chr9	32348631	32349035	+	MLT1B	LTR	ERVL-MaLR	chr9	32348681	32348683	+	ENSMUST00000214720.1,ENSMUSG00000111056.1	Gm39317	ENSMUSG00000111056.1	ENSMUST00000214720.1	lincRNA	chr9:32348682-32361611
chr9	32349046	32349433	-	MTD	LTR	ERVL-MaLR	chr9	32349288	32349290	+	ENSMUST00000213360.1,ENSMUSG00000111056.1	Gm39317	ENSMUSG00000111056.1	ENSMUST00000213360.1	lincRNA	chr9:32349289-32361738
chr9	32446824	32446928	-	U6	snRNA	snRNA	chr9	32446927	32446929	-	ENSMUST00000082558.1,ENSMUSG00000064492.1	Gm22060	ENSMUSG00000064492.1	ENSMUST00000082558.1	snRNA	chr9:32446822-32446928
chr9	32510350	32510447	+	(TG)n	Simple_repeat	Simple_repeat	chr9	32510382	32510384	-	ENSMUST00000192379.1,ENSMUSG00000102352.1	Gm38346	ENSMUSG00000102352.1	ENSMUST00000192379.1	TEC	chr9:32507745-32510383
chr9	32696076	32696169	+	(CGAG)n	Simple_repeat	Simple_repeat	chr9	32696120	32696122	+	ENSMUST00000184887.1,ENSMUSG00000032035.15	Ets1	ENSMUSG00000032035.15	ENSMUST00000184887.1	protein_coding	chr9:32696121-32755275
chr9	32808469	32814364	-	L1_Mus1	LINE	L1	chr9	32813733	32813735	+	ENSMUST00000183423.1,ENSMUSG00000099148.1	Gm3331	ENSMUSG00000099148.1	ENSMUST00000183423.1	lincRNA	chr9:32813734-32834104
chr9	32839679	32846143	-	IAPEz-int	LTR	ERVK	chr9	32839921	32839923	-	ENSMUST00000194946.1,ENSMUSG00000102467.1	Gm37167	ENSMUSG00000102467.1	ENSMUST00000194946.1	TEC	chr9:32839527-32839922
chr9	32928964	32929050	+	(GA)n	Simple_repeat	Simple_repeat	chr9	32928965	32928967	-	ENSMUST00000185169.1,ENSMUSG00000099025.1	Gm27162	ENSMUSG00000099025.1	ENSMUST00000185169.1	lincRNA	chr9:32904937-32928966
chr9	33151018	33151818	+	Lx5	LINE	L1	chr9	33151291	33151293	+	ENSMUST00000217419.1,ENSMUSG00000111645.1	Gm32171	ENSMUSG00000111645.1	ENSMUST00000217419.1	lincRNA	chr9:33151292-33262516
chr9	33160580	33160919	-	IAPLTR1a_Mm	LTR	ERVK	chr9	33160689	33160691	-	ENSMUST00000194275.1,ENSMUSG00000102712.1	Gm37758	ENSMUSG00000102712.1	ENSMUST00000194275.1	TEC	chr9:33160062-33160690
chr9	33491992	33492172	-	MTEa	LTR	ERVL-MaLR	chr9	33492013	33492015	-	ENSMUST00000213509.1,ENSMUSG00000111878.1	Gm47777	ENSMUSG00000111878.1	ENSMUST00000213509.1	lincRNA	chr9:33482183-33492014
chr9	33597223	33598539	+	L1MC3	LINE	L1	chr9	33597364	33597366	+	ENSMUST00000215867.1,ENSMUSG00000111276.1	Gm47778	ENSMUSG00000111276.1	ENSMUST00000215867.1	lincRNA	chr9:33597365-33600468
chr9	33942052	33942408	+	RLTR10	LTR	ERVK	chr9	33942309	33942311	+	ENSMUST00000184359.1,ENSMUSG00000098358.1	Gm27164	ENSMUSG00000098358.1	ENSMUST00000184359.1	lincRNA	chr9:33942310-34007173
chr9	34039340	34043205	+	Lx5c	LINE	L1	chr9	34042368	34042370	+	ENSMUST00000184229.1,ENSMUSG00000098758.1	7630403G23Rik	ENSMUSG00000098758.1	ENSMUST00000184229.1	lincRNA	chr9:34042369-34059019
chr9	34200031	34200256	-	URR1B	DNA	hAT-Charlie	chr9	34200227	34200229	+	ENSMUST00000183960.1,ENSMUSG00000098909.1	Gm27161	ENSMUSG00000098909.1	ENSMUST00000183960.1	processed_pseudogene	chr9:34200228-34200789
chr9	34459074	34459206	-	L1ME3	LINE	L1	chr9	34459180	34459182	+	ENSMUST00000216503.1,ENSMUSG00000110925.1	Gm47858	ENSMUSG00000110925.1	ENSMUST00000216503.1	lincRNA	chr9:34459181-34477056
chr9	34488726	34488778	+	(CTCG)n	Simple_repeat	Simple_repeat	chr9	34488732	34488734	+	ENSMUST00000187625.6,ENSMUSG00000032036.15	Kirrel3	ENSMUSG00000032036.15	ENSMUST00000187625.6	protein_coding	chr9:34488733-35036716
chr9	34959690	34960022	-	MLT1A	LTR	ERVL-MaLR	chr9	34960018	34960020	+	ENSMUST00000158840.1,ENSMUSG00000089465.1	Gm23702	ENSMUSG00000089465.1	ENSMUST00000158840.1	rRNA	chr9:34960019-34960148
chr9	34960018	34960108	+	5S	rRNA	rRNA	chr9	34960018	34960020	+	ENSMUST00000158840.1,ENSMUSG00000089465.1	Gm23702	ENSMUSG00000089465.1	ENSMUST00000158840.1	rRNA	chr9:34960019-34960148
chr9	35116814	35116909	+	G-rich	Low_complexity	Low_complexity	chr9	35116872	35116874	-	ENSMUST00000034537.7,ENSMUSG00000032038.7	St3gal4	ENSMUSG00000032038.7	ENSMUST00000034537.7	protein_coding	chr9:35046576-35116873
chr9	35206575	35206951	+	ORR1C2	LTR	ERVL-MaLR	chr9	35206688	35206690	-	ENSMUST00000216618.1,ENSMUSG00000039048.15	Foxred1	ENSMUSG00000039048.15	ENSMUST00000216618.1	protein_coding	chr9:35205865-35206689
chr9	35280674	35281182	-	RMER2	LTR	ERV1	chr9	35281104	35281106	+	ENSMUST00000213706.1,ENSMUSG00000111746.1	4933422A05Rik	ENSMUSG00000111746.1	ENSMUST00000213706.1	lincRNA	chr9:35281105-35285423
chr9	35474885	35475044	+	U1	snRNA	snRNA	chr9	35474884	35474886	+	ENSMUST00000084000.1,ENSMUSG00000065934.1	Gm25630	ENSMUSG00000065934.1	ENSMUST00000084000.1	snRNA	chr9:35474885-35475046
chr9	36011505	36011822	+	RLTR10B2	LTR	ERVK	chr9	36011557	36011559	-	ENSMUST00000184873.2,ENSMUSG00000099201.8	Gm27187	ENSMUSG00000099201.8	ENSMUST00000184873.2	lincRNA	chr9:35960732-36011558
chr9	36088844	36095215	-	ETnERV-int	LTR	ERVK	chr9	36092358	36092360	-	ENSMUST00000215334.1,ENSMUSG00000111619.1	Gm48348	ENSMUSG00000111619.1	ENSMUST00000215334.1	processed_pseudogene	chr9:36089920-36092359
chr9	36249103	36250866	+	Lx3_Mus	LINE	L1	chr9	36249947	36249949	+	ENSMUST00000213739.1,ENSMUSG00000111023.1	Gm48391	ENSMUSG00000111023.1	ENSMUST00000213739.1	transcribed_processed_pseudogene	chr9:36249948-36254801
chr9	36251916	36255926	+	Lx3_Mus	LINE	L1	chr9	36254659	36254661	+	ENSMUST00000213629.1,ENSMUSG00000111023.1	Gm48391	ENSMUSG00000111023.1	ENSMUST00000213629.1	transcribed_processed_pseudogene	chr9:36254660-36263066
chr9	36376292	36382748	-	L1Md_T	LINE	L1	chr9	36380807	36380809	-	ENSMUST00000215904.1,ENSMUSG00000111327.1	Gm48401	ENSMUSG00000111327.1	ENSMUST00000215904.1	processed_pseudogene	chr9:36376974-36380808
chr9	36376292	36382748	-	L1Md_T	LINE	L1	chr9	36381684	36381686	+	ENSMUST00000215264.1,ENSMUSG00000110812.1	Gm48407	ENSMUSG00000110812.1	ENSMUST00000215264.1	unprocessed_pseudogene	chr9:36381685-36381899
chr9	36562301	36567714	-	L1Md_T	LINE	L1	chr9	36567700	36567702	+	ENSMUST00000214753.1,ENSMUSG00000110880.1	Gm48431	ENSMUSG00000110880.1	ENSMUST00000214753.1	unprocessed_pseudogene	chr9:36567701-36567969
chr9	36643243	36643875	-	RLTR48A	LTR	ERV1	chr9	36643375	36643377	-	ENSMUST00000184901.1,ENSMUSG00000070313.8	A630095E13Rik	ENSMUSG00000070313.8	ENSMUST00000184901.1	protein_coding	chr9:36635756-36643376
chr9	36670927	36676221	+	L1Md_T	LINE	L1	chr9	36672696	36672698	+	ENSMUST00000216568.1,ENSMUSG00000111485.1	Gm48443	ENSMUSG00000111485.1	ENSMUST00000216568.1	processed_pseudogene	chr9:36672697-36676537
chr9	36790476	36790573	-	PB1D10	SINE	Alu	chr9	36790491	36790493	-	ENSMUST00000217339.1,ENSMUSG00000062762.16	Ei24	ENSMUSG00000062762.16	ENSMUST00000217339.1	protein_coding	chr9:36788897-36790492
chr9	37147327	37147427	+	C-rich	Low_complexity	Low_complexity	chr9	37147406	37147408	-	ENSMUST00000039674.12,ENSMUSG00000035934.16	Pknox2	ENSMUSG00000035934.16	ENSMUST00000039674.12	protein_coding	chr9:36890982-37147407
chr9	37268967	37269341	+	L1_Mus1	LINE	L1	chr9	37269286	37269288	+	ENSMUST00000216704.1,ENSMUSG00000111681.1	Gm47640	ENSMUSG00000111681.1	ENSMUST00000216704.1	TEC	chr9:37269287-37272168
chr9	37299140	37299899	+	RCHARR1	DNA	hAT-Charlie	chr9	37299360	37299362	-	ENSMUST00000214258.1,ENSMUSG00000111421.1	Gm47643	ENSMUSG00000111421.1	ENSMUST00000214258.1	TEC	chr9:37296126-37299361
chr9	37311797	37312229	+	RLTR10C	LTR	ERVK	chr9	37312135	37312137	+	ENSMUST00000217440.1,ENSMUSG00000111748.1	Gm34885	ENSMUSG00000111748.1	ENSMUST00000217440.1	antisense	chr9:37312136-37324436
chr9	37331735	37338109	+	IAPEz-int	LTR	ERVK	chr9	37334428	37334430	-	ENSMUST00000217345.1,ENSMUSG00000111481.1	Gm47652	ENSMUSG00000111481.1	ENSMUST00000217345.1	TEC	chr9:37329767-37334429
chr9	37478642	37478684	+	polypyrimidine	Low_complexity	Low_complexity	chr9	37478642	37478644	-	ENSMUST00000214167.1,ENSMUSG00000111702.1	Gm47945	ENSMUSG00000111702.1	ENSMUST00000214167.1	unprocessed_pseudogene	chr9:37478453-37478643
chr9	37497591	37497800	+	ID_B1	SINE	B4	chr9	37497768	37497770	+	ENSMUST00000214783.1,ENSMUSG00000110993.1	Gm47963	ENSMUSG00000110993.1	ENSMUST00000214783.1	TEC	chr9:37497769-37499912
chr9	37536174	37536250	-	MIRb	SINE	MIR	chr9	37536249	37536251	+	ENSMUST00000131832.1,ENSMUSG00000001946.14	Esam	ENSMUSG00000001946.14	ENSMUST00000131832.1	protein_coding	chr9:37536250-37537492
chr9	37613618	37613654	+	(T)n	Simple_repeat	Simple_repeat	chr9	37613622	37613624	+	ENSMUST00000215678.1,ENSMUSG00000001942.8	Siae	ENSMUSG00000001942.8	ENSMUST00000215678.1	protein_coding	chr9:37613623-37618075
chr9	38002785	38003096	-	ORR1A3	LTR	ERVL-MaLR	chr9	38003070	38003072	+	ENSMUST00000211842.1,ENSMUSG00000110513.1	Olfr882-ps1	ENSMUSG00000110513.1	ENSMUST00000211842.1	unprocessed_pseudogene	chr9:38003071-38004895
chr9	38703631	38703722	+	(TA)n	Simple_repeat	Simple_repeat	chr9	38703672	38703674	-	ENSMUST00000215612.1,ENSMUSG00000056961.2	Olfr919	ENSMUSG00000056961.2	ENSMUST00000215612.1	protein_coding	chr9:38696804-38703673
chr9	38751071	38752330	+	Lx7	LINE	L1	chr9	38752298	38752300	+	ENSMUST00000074740.4,ENSMUSG00000061039.5	Olfr920	ENSMUSG00000061039.5	ENSMUST00000074740.4	protein_coding	chr9:38752299-38760117
chr9	39048598	39048668	+	(CA)n	Simple_repeat	Simple_repeat	chr9	39048648	39048650	-	ENSMUST00000104850.2,ENSMUSG00000093935.1	Gm25529	ENSMUSG00000093935.1	ENSMUST00000104850.2	miRNA	chr9:39048558-39048649
chr9	39189031	39190232	+	MMERVK9C_I-int	LTR	ERVK	chr9	39189151	39189153	-	ENSMUST00000213716.1,ENSMUSG00000110875.1	Gm47100	ENSMUSG00000110875.1	ENSMUST00000213716.1	processed_pseudogene	chr9:39189003-39189152
chr9	39553966	39554162	-	MLT1F1	LTR	ERVL-MaLR	chr9	39554052	39554054	-	ENSMUST00000215505.1,ENSMUSG00000050853.3	Olfr958	ENSMUSG00000050853.3	ENSMUST00000215505.1	protein_coding	chr9:39547958-39554053
chr9	39553966	39554162	-	MLT1F1	LTR	ERVL-MaLR	chr9	39554053	39554055	-	ENSMUST00000217227.1,ENSMUSG00000050853.3	Olfr958	ENSMUSG00000050853.3	ENSMUST00000217227.1	protein_coding	chr9:39547958-39554054
chr9	39592207	39592263	+	(CA)n	Simple_repeat	Simple_repeat	chr9	39592245	39592247	-	ENSMUST00000128054.1,ENSMUSG00000038112.15	AW551984	ENSMUSG00000038112.15	ENSMUST00000128054.1	protein_coding	chr9:39590592-39592246
chr9	39960993	39961393	-	RLTR10	LTR	ERVK	chr9	39961132	39961134	-	ENSMUST00000213171.1,ENSMUSG00000047352.6	Olfr976	ENSMUSG00000047352.6	ENSMUST00000213171.1	protein_coding	chr9:39954257-39961133
chr9	40104403	40105598	+	L1Md_F2	LINE	L1	chr9	40104453	40104455	-	ENSMUST00000213858.1,ENSMUSG00000045812.5	Olfr984	ENSMUSG00000045812.5	ENSMUST00000213858.1	protein_coding	chr9:40096515-40104454
chr9	40109569	40111202	+	Lx2B2	LINE	L1	chr9	40110961	40110963	-	ENSMUST00000214856.1,ENSMUSG00000045812.5	Olfr984	ENSMUSG00000045812.5	ENSMUST00000214856.1	protein_coding	chr9:40096515-40110962
chr9	40346161	40346295	+	RLTR51A_Mm	LTR	ERVK?	chr9	40346289	40346291	-	ENSMUST00000121357.7,ENSMUSG00000040111.16	Gramd1b	ENSMUSG00000040111.16	ENSMUST00000121357.7	protein_coding	chr9:40293233-40346290
chr9	40366798	40366945	-	B1_Mus2	SINE	Alu	chr9	40366901	40366903	-	ENSMUST00000214407.1,ENSMUSG00000110928.1	Gm48114	ENSMUSG00000110928.1	ENSMUST00000214407.1	TEC	chr9:40363217-40366902
chr9	40669087	40669226	-	MIRb	SINE	MIR	chr9	40669106	40669108	-	ENSMUST00000216204.1,ENSMUSG00000110992.1	Gm35371	ENSMUSG00000110992.1	ENSMUST00000216204.1	lincRNA	chr9:40667960-40669107
chr9	40685907	40685964	+	G-rich	Low_complexity	Low_complexity	chr9	40685961	40685963	+	ENSMUST00000139577.1,ENSMUSG00000032024.10	Clmp	ENSMUSG00000032024.10	ENSMUST00000139577.1	protein_coding	chr9:40685962-40761060
chr9	40719948	40720046	-	MIRb	SINE	MIR	chr9	40719985	40719987	-	ENSMUST00000128235.1,ENSMUSG00000086014.1	Gm16095	ENSMUSG00000086014.1	ENSMUST00000128235.1	antisense	chr9:40718906-40719986
chr9	40762581	40762798	-	Tigger5b	DNA	TcMar-Tigger	chr9	40762672	40762674	-	ENSMUST00000213907.1,ENSMUSG00000111189.1	Gm48293	ENSMUSG00000111189.1	ENSMUST00000213907.1	antisense	chr9:40747281-40762673
chr9	40774042	40774150	-	B1F	SINE	Alu	chr9	40774093	40774095	+	ENSMUST00000134153.1,ENSMUSG00000032024.10	Clmp	ENSMUSG00000032024.10	ENSMUST00000134153.1	protein_coding	chr9:40774094-40782471
chr9	40802331	40802367	+	(T)n	Simple_repeat	Simple_repeat	chr9	40802341	40802343	+	ENSMUST00000127699.1,ENSMUSG00000015656.17	Hspa8	ENSMUSG00000015656.17	ENSMUST00000127699.1	protein_coding	chr9:40802342-40802912
chr9	40803582	40803669	+	U14	snRNA	snRNA	chr9	40803582	40803584	+	ENSMUST00000101927.1,ENSMUSG00000096263.1	Snord14c	ENSMUSG00000096263.1	ENSMUST00000101927.1	snoRNA	chr9:40803583-40803668
chr9	40803994	40804081	+	U14	snRNA	snRNA	chr9	40803994	40803996	+	ENSMUST00000083424.1,ENSMUSG00000095118.1	Snord14d	ENSMUSG00000095118.1	ENSMUST00000083424.1	snoRNA	chr9:40803995-40804080
chr9	40804747	40804837	+	U14	snRNA	snRNA	chr9	40804747	40804749	+	ENSMUST00000082857.1,ENSMUSG00000064791.1	Snord14e	ENSMUSG00000064791.1	ENSMUST00000082857.1	snoRNA	chr9:40804748-40804837
chr9	40964096	40964134	+	GC_rich	Low_complexity	Low_complexity	chr9	40964117	40964119	-	ENSMUST00000034521.7,ENSMUSG00000032023.7	Jhy	ENSMUSG00000032023.7	ENSMUST00000034521.7	protein_coding	chr9:40894849-40964118
chr9	41112052	41112199	+	B1_Mus1	SINE	Alu	chr9	41112080	41112082	-	ENSMUST00000217288.1,ENSMUSG00000110914.1	Gm48611	ENSMUSG00000110914.1	ENSMUST00000217288.1	TEC	chr9:41109527-41112081
chr9	41192388	41192711	-	RLTR41A2	LTR	ERV1	chr9	41192445	41192447	+	ENSMUST00000213914.1,ENSMUSG00000100837.7	1700063D05Rik	ENSMUSG00000100837.7	ENSMUST00000213914.1	lincRNA	chr9:41192446-41217990
chr9	41339435	41339541	-	U6	snRNA	snRNA	chr9	41339540	41339542	-	ENSMUST00000082975.1,ENSMUSG00000064909.1	Gm25401	ENSMUSG00000064909.1	ENSMUST00000082975.1	snRNA	chr9:41339436-41339541
chr9	41559159	41559410	-	ORR1A0	LTR	ERVL-MaLR	chr9	41559258	41559260	-	ENSMUST00000213487.1,ENSMUSG00000111854.1	Gm48740	ENSMUSG00000111854.1	ENSMUST00000213487.1	lincRNA	chr9:41551506-41559259
chr9	41559159	41559410	-	ORR1A0	LTR	ERVL-MaLR	chr9	41559258	41559260	-	ENSMUST00000213560.1,ENSMUSG00000111854.1	Gm48740	ENSMUSG00000111854.1	ENSMUST00000213560.1	lincRNA	chr9:41551561-41559259
chr9	41600192	41600303	+	C-rich	Low_complexity	Low_complexity	chr9	41600271	41600273	+	ENSMUST00000188412.1,ENSMUSG00000074415.14	3110039I08Rik	ENSMUSG00000074415.14	ENSMUST00000188412.1	processed_transcript	chr9:41600272-41612729
chr9	41651809	41651981	-	MLTR14	LTR	ERV1	chr9	41651892	41651894	+	ENSMUST00000217362.1,ENSMUSG00000098093.2	Gm8707	ENSMUSG00000098093.2	ENSMUST00000217362.1	transcribed_processed_pseudogene	chr9:41651893-41654554
chr9	41815379	41816008	-	Tigger13a	DNA	TcMar-Tigger	chr9	41815603	41815605	+	ENSMUST00000213355.1,ENSMUSG00000110981.1	Gm35940	ENSMUSG00000110981.1	ENSMUST00000213355.1	processed_transcript	chr9:41815604-41838418
chr9	41875530	41875745	+	ID_B1	SINE	B4	chr9	41875550	41875552	-	ENSMUST00000214689.1,ENSMUSG00000111511.1	AC160966.1	ENSMUSG00000111511.1	ENSMUST00000214689.1	processed_transcript	chr9:41803353-41875551
chr9	41876014	41876364	-	ORR1E	LTR	ERVL-MaLR	chr9	41876267	41876269	-	ENSMUST00000216860.1,ENSMUSG00000111511.1	AC160966.1	ENSMUSG00000111511.1	ENSMUST00000216860.1	processed_transcript	chr9:41803321-41876268
chr9	41876014	41876364	-	ORR1E	LTR	ERVL-MaLR	chr9	41876267	41876269	-	ENSMUST00000213182.1,ENSMUSG00000111511.1	AC160966.1	ENSMUSG00000111511.1	ENSMUST00000213182.1	processed_transcript	chr9:41852112-41876268
chr9	41876014	41876364	-	ORR1E	LTR	ERVL-MaLR	chr9	41876318	41876320	+	ENSMUST00000213590.1,ENSMUSG00000111156.1	Gm48814	ENSMUSG00000111156.1	ENSMUST00000213590.1	bidirectional_promoter_lncRNA	chr9:41876319-41879401
chr9	42142360	42142456	+	(CAGA)n	Simple_repeat	Simple_repeat	chr9	42142360	42142362	+	ENSMUST00000217090.1,ENSMUSG00000111167.1	Gm39321	ENSMUSG00000111167.1	ENSMUST00000217090.1	lincRNA	chr9:42142361-42144264
chr9	42209228	42209568	+	MTEb	LTR	ERVL-MaLR	chr9	42209230	42209232	-	ENSMUST00000213343.1,ENSMUSG00000111767.1	4930546K05Rik	ENSMUSG00000111767.1	ENSMUST00000213343.1	lincRNA	chr9:42176592-42209231
chr9	42209228	42209568	+	MTEb	LTR	ERVL-MaLR	chr9	42209230	42209232	-	ENSMUST00000216586.1,ENSMUSG00000111767.1	4930546K05Rik	ENSMUSG00000111767.1	ENSMUST00000216586.1	lincRNA	chr9:42182238-42209231
chr9	42428151	42428423	-	L2a	LINE	L2	chr9	42428237	42428239	-	ENSMUST00000142775.1,ENSMUSG00000037287.15	Tbcel	ENSMUSG00000037287.15	ENSMUST00000142775.1	protein_coding	chr9:42413990-42428238
chr9	43215533	43217140	-	ORR1B1-int	LTR	ERVL-MaLR	chr9	43217121	43217123	+	ENSMUST00000216693.1,ENSMUSG00000111864.1	Rpl26-ps6	ENSMUSG00000111864.1	ENSMUST00000216693.1	processed_pseudogene	chr9:43217122-43217555
chr9	43259841	43259880	+	L2a	LINE	L2	chr9	43259879	43259881	+	ENSMUST00000179013.3,ENSMUSG00000095385.3	D630033O11Rik	ENSMUSG00000095385.3	ENSMUST00000179013.3	lincRNA	chr9:43259880-43280066
chr9	43274209	43274277	-	MIR3	SINE	MIR	chr9	43274272	43274274	+	ENSMUST00000210037.1,ENSMUSG00000095385.3	D630033O11Rik	ENSMUSG00000095385.3	ENSMUST00000210037.1	lincRNA	chr9:43274273-43280066
chr9	43520939	43521041	+	PB1D10	SINE	Alu	chr9	43521003	43521005	-	ENSMUST00000216439.1,ENSMUSG00000111110.1	Gm36855	ENSMUSG00000111110.1	ENSMUST00000216439.1	lincRNA	chr9:43515363-43521004
chr9	43736374	43736522	-	B1_Mus2	SINE	Alu	chr9	43736435	43736437	-	ENSMUST00000213140.1,ENSMUSG00000111129.1	Gm47542	ENSMUSG00000111129.1	ENSMUST00000213140.1	TEC	chr9:43734114-43736436
chr9	43741619	43741731	-	B1_Mus2	SINE	Alu	chr9	43741694	43741696	-	ENSMUST00000217551.1,ENSMUSG00000111334.1	AC162938.1	ENSMUSG00000111334.1	ENSMUST00000217551.1	processed_transcript	chr9:43738868-43741695
chr9	43905897	43906006	-	U6	snRNA	snRNA	chr9	43906001	43906003	-	ENSMUST00000157419.1,ENSMUSG00000088044.1	Gm23326	ENSMUSG00000088044.1	ENSMUST00000157419.1	snRNA	chr9:43905898-43906002
chr9	43993928	43994421	+	MLTR14	LTR	ERV1	chr9	43993983	43993985	+	ENSMUST00000217357.1,ENSMUSG00000111283.1	E230034D01Rik	ENSMUSG00000111283.1	ENSMUST00000217357.1	processed_transcript	chr9:43993984-43999904
chr9	43993928	43994421	+	MLTR14	LTR	ERV1	chr9	43993987	43993989	+	ENSMUST00000214440.1,ENSMUSG00000111283.1	E230034D01Rik	ENSMUSG00000111283.1	ENSMUST00000214440.1	processed_transcript	chr9:43993988-44000673
chr9	43993928	43994421	+	MLTR14	LTR	ERV1	chr9	43994039	43994041	+	ENSMUST00000215430.1,ENSMUSG00000111283.1	E230034D01Rik	ENSMUSG00000111283.1	ENSMUST00000215430.1	processed_transcript	chr9:43994040-43995848
chr9	43997990	43999298	+	MYSERV16_I-int	LTR	ERVK	chr9	43998592	43998594	-	ENSMUST00000214791.1,ENSMUSG00000110815.1	Gm47345	ENSMUSG00000110815.1	ENSMUST00000214791.1	TEC	chr9:43996471-43998593
chr9	44045151	44045223	-	L2a	LINE	L2	chr9	44045183	44045185	+	ENSMUST00000213632.1,ENSMUSG00000032011.5	Thy1	ENSMUSG00000032011.5	ENSMUST00000213632.1	protein_coding	chr9:44045184-44046375
chr9	44045644	44045684	+	MurSatRep1	Unknown	Unknown	chr9	44045671	44045673	+	ENSMUST00000215809.1,ENSMUSG00000032011.5	Thy1	ENSMUSG00000032011.5	ENSMUST00000215809.1	protein_coding	chr9:44045672-44046951
chr9	44134532	44134628	+	GC_rich	Low_complexity	Low_complexity	chr9	44134561	44134563	+	ENSMUST00000034650.14,ENSMUSG00000032135.15	Mcam	ENSMUSG00000032135.15	ENSMUST00000034650.14	protein_coding	chr9:44134562-44142727
chr9	44185904	44186048	-	B1_Mus2	SINE	Alu	chr9	44185964	44185966	-	ENSMUST00000206629.1,ENSMUSG00000034342.9	Cbl	ENSMUSG00000034342.9	ENSMUST00000206629.1	protein_coding	chr9:44169020-44185965
chr9	44234019	44234141	+	(CG)n	Simple_repeat	Simple_repeat	chr9	44234048	44234050	-	ENSMUST00000206720.1,ENSMUSG00000034342.9	Cbl	ENSMUSG00000034342.9	ENSMUST00000206720.1	protein_coding	chr9:44142976-44234049
chr9	44279779	44280168	+	MTD	LTR	ERVL-MaLR	chr9	44279837	44279839	-	ENSMUST00000085979.10,ENSMUSG00000032131.16	Abcg4	ENSMUSG00000032131.16	ENSMUST00000085979.10	protein_coding	chr9:44274452-44279838
chr9	44279779	44280168	+	MTD	LTR	ERVL-MaLR	chr9	44279790	44279792	-	ENSMUST00000159997.1,ENSMUSG00000032131.16	Abcg4	ENSMUSG00000032131.16	ENSMUST00000159997.1	protein_coding	chr9:44277503-44279791
chr9	44292457	44292505	-	ID4	SINE	ID	chr9	44292462	44292464	-	ENSMUST00000217413.1,ENSMUSG00000111291.1	Gm48604	ENSMUSG00000111291.1	ENSMUST00000217413.1	lincRNA	chr9:44290044-44292463
chr9	44298504	44298699	+	MIRb	SINE	MIR	chr9	44298635	44298637	-	ENSMUST00000215665.1,ENSMUSG00000032119.5	Hinfp	ENSMUSG00000032119.5	ENSMUST00000215665.1	protein_coding	chr9:44297713-44298636
chr9	44363445	44363678	+	7SK	RNA	RNA	chr9	44363451	44363453	+	ENSMUST00000157403.1,ENSMUSG00000088028.1	Gm22141	ENSMUSG00000088028.1	ENSMUST00000157403.1	misc_RNA	chr9:44363452-44363728
chr9	44390517	44390721	+	B3	SINE	B2	chr9	44390660	44390662	+	ENSMUST00000161147.1,ENSMUSG00000032115.14	Hyou1	ENSMUSG00000032115.14	ENSMUST00000161147.1	protein_coding	chr9:44390661-44391312
chr9	44407016	44407129	+	C-rich	Low_complexity	Low_complexity	chr9	44407105	44407107	-	ENSMUST00000213747.1,ENSMUSG00000032112.10	Trappc4	ENSMUSG00000032112.10	ENSMUST00000213747.1	protein_coding	chr9:44403698-44407106
chr9	44407016	44407129	+	C-rich	Low_complexity	Low_complexity	chr9	44407041	44407043	-	ENSMUST00000217084.1,ENSMUSG00000032112.10	Trappc4	ENSMUSG00000032112.10	ENSMUST00000217084.1	protein_coding	chr9:44404064-44407042
chr9	44411201	44411272	-	B1_Mus1	SINE	Alu	chr9	44411229	44411231	-	ENSMUST00000215402.1,ENSMUSG00000043923.8	Ccdc84	ENSMUSG00000043923.8	ENSMUST00000215402.1	protein_coding	chr9:44410161-44411230
chr9	44418523	44418648	-	B1_Mus1	SINE	Alu	chr9	44418568	44418570	-	ENSMUST00000053286.8,ENSMUSG00000043923.8	Ccdc84	ENSMUSG00000043923.8	ENSMUST00000053286.8	protein_coding	chr9:44410159-44418569
chr9	44423261	44423655	-	BGLII_Mus	LTR	ERVK	chr9	44423390	44423392	-	ENSMUST00000213494.1,ENSMUSG00000111849.1	Gm47186	ENSMUSG00000111849.1	ENSMUST00000213494.1	lincRNA	chr9:44419938-44423391
chr9	44441075	44441246	+	ID_B1	SINE	B4	chr9	44441135	44441137	-	ENSMUST00000098837.2,ENSMUSG00000074397.4	Foxr1	ENSMUSG00000074397.4	ENSMUST00000098837.2	protein_coding	chr9:44434200-44441136
chr9	44476530	44476636	-	RSINE1	SINE	B4	chr9	44476531	44476533	-	ENSMUST00000158168.1,ENSMUSG00000088793.1	Gm22540	ENSMUSG00000088793.1	ENSMUST00000158168.1	snRNA	chr9:44476416-44476532
chr9	44526574	44526598	+	(TG)n	Simple_repeat	Simple_repeat	chr9	44526581	44526583	-	ENSMUST00000215661.1,ENSMUSG00000047880.15	Cxcr5	ENSMUSG00000047880.15	ENSMUST00000215661.1	protein_coding	chr9:44514205-44526582
chr9	44556263	44556736	-	ERVL-E-int	LTR	ERVL	chr9	44556390	44556392	-	ENSMUST00000179828.7,ENSMUSG00000047880.15	Cxcr5	ENSMUSG00000047880.15	ENSMUST00000179828.7	protein_coding	chr9:44511788-44556391
chr9	44556263	44556736	-	ERVL-E-int	LTR	ERVL	chr9	44556285	44556287	-	ENSMUST00000213357.1,ENSMUSG00000047880.15	Cxcr5	ENSMUSG00000047880.15	ENSMUST00000213357.1	protein_coding	chr9:44555245-44556286
chr9	44561621	44561965	+	L1M2	LINE	L1	chr9	44561876	44561878	-	ENSMUST00000215293.1,ENSMUSG00000047880.15	Cxcr5	ENSMUSG00000047880.15	ENSMUST00000215293.1	protein_coding	chr9:44511787-44561877
chr9	44597815	44598277	+	RLTR23	LTR	ERV1	chr9	44598017	44598019	-	ENSMUST00000217329.1,ENSMUSG00000110721.1	Gm47231	ENSMUSG00000110721.1	ENSMUST00000217329.1	lincRNA	chr9:44596563-44598018
chr9	44672113	44672583	-	RLTR41	LTR	ERV1	chr9	44672237	44672239	-	ENSMUST00000213859.1,ENSMUSG00000110755.1	BC049987	ENSMUSG00000110755.1	ENSMUST00000213859.1	lincRNA	chr9:44670453-44672238
chr9	44672113	44672583	-	RLTR41	LTR	ERV1	chr9	44672189	44672191	-	ENSMUST00000216987.1,ENSMUSG00000110755.1	BC049987	ENSMUSG00000110755.1	ENSMUST00000216987.1	lincRNA	chr9:44670796-44672190
chr9	44776222	44776541	+	ORR1A2	LTR	ERVL-MaLR	chr9	44776376	44776378	+	ENSMUST00000118186.1,ENSMUSG00000002031.12	Ift46	ENSMUSG00000002031.12	ENSMUST00000118186.1	protein_coding	chr9:44776377-44790895
chr9	44777852	44777952	-	PB1D9	SINE	Alu	chr9	44777941	44777943	+	ENSMUST00000133167.1,ENSMUSG00000002031.12	Ift46	ENSMUSG00000002031.12	ENSMUST00000133167.1	protein_coding	chr9:44777942-44782207
chr9	44789391	44789519	-	B1_Mur1	SINE	Alu	chr9	44789443	44789445	+	ENSMUST00000149020.2,ENSMUSG00000002031.12	Ift46	ENSMUSG00000002031.12	ENSMUST00000149020.2	protein_coding	chr9:44789444-44790891
chr9	44789392	44789546	-	B4	SINE	B4	chr9	44789443	44789445	+	ENSMUST00000149020.2,ENSMUSG00000002031.12	Ift46	ENSMUSG00000002031.12	ENSMUST00000149020.2	protein_coding	chr9:44789444-44790891
chr9	44859156	44859316	+	RSINE1	SINE	B4	chr9	44859174	44859176	-	ENSMUST00000213541.1,ENSMUSG00000111017.1	Gm48314	ENSMUSG00000111017.1	ENSMUST00000213541.1	TEC	chr9:44856437-44859175
chr9	44972977	44973199	-	ID_B1	SINE	B4	chr9	44973062	44973064	-	ENSMUST00000159019.2,ENSMUSG00000002033.14	Cd3g	ENSMUSG00000002033.14	ENSMUST00000159019.2	protein_coding	chr9:44969752-44973063
chr9	45169786	45170151	+	ORR1C1	LTR	ERVL-MaLR	chr9	45169945	45169947	-	ENSMUST00000213594.1,ENSMUSG00000111811.1	Gm39327	ENSMUSG00000111811.1	ENSMUST00000213594.1	lincRNA	chr9:45166985-45169946
chr9	45169786	45170151	+	ORR1C1	LTR	ERVL-MaLR	chr9	45169945	45169947	-	ENSMUST00000215874.1,ENSMUSG00000111811.1	Gm39327	ENSMUSG00000111811.1	ENSMUST00000215874.1	lincRNA	chr9:45166985-45169946
chr9	45426604	45426798	-	MIRb	SINE	MIR	chr9	45426627	45426629	+	ENSMUST00000217335.1,ENSMUSG00000032087.10	Dscaml1	ENSMUSG00000032087.10	ENSMUST00000217335.1	protein_coding	chr9:45426628-45571224
chr9	45426604	45426798	-	MIRb	SINE	MIR	chr9	45426642	45426644	+	ENSMUST00000217538.1,ENSMUSG00000032087.10	Dscaml1	ENSMUSG00000032087.10	ENSMUST00000217538.1	protein_coding	chr9:45426643-45553289
chr9	45426604	45426798	-	MIRb	SINE	MIR	chr9	45426642	45426644	+	ENSMUST00000213919.1,ENSMUSG00000032087.10	Dscaml1	ENSMUSG00000032087.10	ENSMUST00000213919.1	protein_coding	chr9:45426643-45672949
chr9	45634705	45634812	-	U6	snRNA	snRNA	chr9	45634811	45634813	-	ENSMUST00000179911.1,ENSMUSG00000096202.1	Gm22069	ENSMUSG00000096202.1	ENSMUST00000179911.1	snRNA	chr9:45634706-45634812
chr9	45794547	45794641	+	(TG)n	Simple_repeat	Simple_repeat	chr9	45794588	45794590	-	ENSMUST00000217022.1,ENSMUSG00000043987.18	Cep164	ENSMUSG00000043987.18	ENSMUST00000217022.1	protein_coding	chr9:45792138-45794589
chr9	45872207	45872319	+	PB1D7	SINE	Alu	chr9	45872260	45872262	-	ENSMUST00000160868.1,ENSMUSG00000042790.16	Rnf214	ENSMUSG00000042790.16	ENSMUST00000160868.1	protein_coding	chr9:45871581-45872261
chr9	45879550	45879649	-	U6	snRNA	snRNA	chr9	45879647	45879649	-	ENSMUST00000157109.1,ENSMUSG00000087734.1	Gm24646	ENSMUSG00000087734.1	ENSMUST00000157109.1	snRNA	chr9:45879550-45879648
chr9	45944981	45945098	-	MIRb	SINE	MIR	chr9	45945032	45945034	-	ENSMUST00000160927.7,ENSMUSG00000034908.16	Sidt2	ENSMUSG00000034908.16	ENSMUST00000160927.7	protein_coding	chr9:45942774-45945033
chr9	45985043	45985109	+	L3	LINE	CR1	chr9	45985050	45985052	-	ENSMUST00000172450.2,ENSMUSG00000003131.7	Pafah1b2	ENSMUSG00000003131.7	ENSMUST00000172450.2	protein_coding	chr9:45962859-45985051
chr9	46012789	46012837	+	GC_rich	Low_complexity	Low_complexity	chr9	46012819	46012821	+	ENSMUST00000126865.7,ENSMUSG00000034135.15	Sik3	ENSMUSG00000034135.15	ENSMUST00000126865.7	protein_coding	chr9:46012820-46224194
chr9	46012914	46013003	+	GC_rich	Low_complexity	Low_complexity	chr9	46012999	46013001	+	ENSMUST00000120247.7,ENSMUSG00000034135.15	Sik3	ENSMUSG00000034135.15	ENSMUST00000120247.7	protein_coding	chr9:46013000-46221234
chr9	46319985	46320754	+	RMER17A	LTR	ERVK	chr9	46319985	46319987	-	ENSMUST00000159565.7,ENSMUSG00000056617.12	4931429L15Rik	ENSMUSG00000056617.12	ENSMUST00000159565.7	protein_coding	chr9:46303361-46319986
chr9	46342251	46343020	-	L1_Mur3	LINE	L1	chr9	46342774	46342776	+	ENSMUST00000214913.1,ENSMUSG00000110864.1	Gm31374	ENSMUSG00000110864.1	ENSMUST00000214913.1	lincRNA	chr9:46342775-46384755
chr9	46532638	46532805	-	X7A_LINE	LINE	CR1	chr9	46532756	46532758	+	ENSMUST00000217323.1,ENSMUSG00000110767.1	Gm31432	ENSMUSG00000110767.1	ENSMUST00000217323.1	lincRNA	chr9:46532757-46533272
chr9	46532638	46532805	-	X7A_LINE	LINE	CR1	chr9	46532756	46532758	+	ENSMUST00000214727.1,ENSMUSG00000110767.1	Gm31432	ENSMUSG00000110767.1	ENSMUST00000214727.1	lincRNA	chr9:46532757-46543376
chr9	46606952	46607499	-	MURVY-LTR	LTR	ERV1	chr9	46607254	46607256	+	ENSMUST00000217349.1,ENSMUSG00000111649.1	Gm48945	ENSMUSG00000111649.1	ENSMUST00000217349.1	lincRNA	chr9:46607255-46612726
chr9	46630112	46630219	-	U6	snRNA	snRNA	chr9	46630218	46630220	-	ENSMUST00000082739.1,ENSMUSG00000064673.1	Gm22805	ENSMUSG00000064673.1	ENSMUST00000082739.1	snRNA	chr9:46630113-46630219
chr9	47525615	47525722	-	U6	snRNA	snRNA	chr9	47525721	47525723	-	ENSMUST00000179708.1,ENSMUSG00000094895.1	Gm22286	ENSMUSG00000094895.1	ENSMUST00000179708.1	snRNA	chr9:47525616-47525722
chr9	47525722	47526186	-	RCHARR1	DNA	hAT-Charlie	chr9	47525721	47525723	-	ENSMUST00000179708.1,ENSMUSG00000094895.1	Gm22286	ENSMUSG00000094895.1	ENSMUST00000179708.1	snRNA	chr9:47525616-47525722
chr9	48049296	48049636	-	L2a	LINE	L2	chr9	48049515	48049517	+	ENSMUST00000217082.1,ENSMUSG00000111117.1	A730065G17Rik	ENSMUSG00000111117.1	ENSMUST00000217082.1	lincRNA	chr9:48049516-48071634
chr9	48158709	48159081	-	IAPLTR2a	LTR	ERVK	chr9	48158964	48158966	-	ENSMUST00000214538.1,ENSMUSG00000110924.1	Gm40518	ENSMUSG00000110924.1	ENSMUST00000214538.1	lincRNA	chr9:48132504-48158965
chr9	48161880	48162462	+	LTR67B	LTR	ERVL	chr9	48162022	48162024	+	ENSMUST00000216998.1,ENSMUSG00000044229.9	Nxpe4	ENSMUSG00000044229.9	ENSMUST00000216998.1	protein_coding	chr9:48162023-48399871
chr9	48161880	48162462	+	LTR67B	LTR	ERVL	chr9	48162114	48162116	+	ENSMUST00000215780.1,ENSMUSG00000044229.9	Nxpe4	ENSMUSG00000044229.9	ENSMUST00000215780.1	protein_coding	chr9:48162115-48399528
chr9	48361691	48362151	+	RMER5	LTR	ERV1	chr9	48362040	48362042	+	ENSMUST00000093853.4,ENSMUSG00000044229.9	Nxpe4	ENSMUSG00000044229.9	ENSMUST00000093853.4	protein_coding	chr9:48362041-48400025
chr9	48472176	48472310	+	L2	LINE	L2	chr9	48472219	48472221	-	ENSMUST00000216142.1,ENSMUSG00000032026.7	Rexo2	ENSMUSG00000032026.7	ENSMUST00000216142.1	protein_coding	chr9:48468886-48472220
chr9	48985399	48985548	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	48985413	48985415	+	ENSMUST00000213874.1,ENSMUSG00000032267.8	Usp28	ENSMUSG00000032267.8	ENSMUST00000213874.1	protein_coding	chr9:48985414-49042510
chr9	48985399	48985548	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	48985464	48985466	+	ENSMUST00000047349.7,ENSMUSG00000032267.8	Usp28	ENSMUSG00000032267.8	ENSMUST00000047349.7	protein_coding	chr9:48985465-49042510
chr9	49825868	49825975	-	U6	snRNA	snRNA	chr9	49825974	49825976	-	ENSMUST00000178565.1,ENSMUSG00000094255.1	Gm25633	ENSMUSG00000094255.1	ENSMUST00000178565.1	snRNA	chr9:49825869-49825975
chr9	50646037	50646289	+	L4_C_Mam	LINE	RTE-X	chr9	50646188	50646190	-	ENSMUST00000125919.7,ENSMUSG00000000168.9	Dlat	ENSMUSG00000000168.9	ENSMUST00000125919.7	protein_coding	chr9:50637456-50646189
chr9	50770831	50770959	-	B3	SINE	B2	chr9	50770947	50770949	-	ENSMUST00000176160.1,ENSMUSG00000037971.10	1110032A03Rik	ENSMUSG00000037971.10	ENSMUST00000176160.1	protein_coding	chr9:50768594-50770948
chr9	50887949	50888046	+	U6	snRNA	snRNA	chr9	50887949	50887951	+	ENSMUST00000158083.1,ENSMUSG00000088708.1	Gm25558	ENSMUSG00000088708.1	ENSMUST00000158083.1	snRNA	chr9:50887950-50888055
chr9	51060832	51061186	-	ORR1E	LTR	ERVL-MaLR	chr9	51060900	51060902	+	ENSMUST00000214452.1,ENSMUSG00000032056.10	Btg4	ENSMUSG00000032056.10	ENSMUST00000214452.1	protein_coding	chr9:51060901-51116625
chr9	51060832	51061186	-	ORR1E	LTR	ERVL-MaLR	chr9	51060921	51060923	+	ENSMUST00000216453.1,ENSMUSG00000032056.10	Btg4	ENSMUSG00000032056.10	ENSMUST00000216453.1	protein_coding	chr9:51060922-51069231
chr9	51655010	51655573	-	L1MA5A	LINE	L1	chr9	51655126	51655128	-	ENSMUST00000089534.5,ENSMUSG00000078308.2	Gm47854	ENSMUSG00000078308.2	ENSMUST00000089534.5	lincRNA	chr9:51621425-51655127
chr9	51815934	51816033	-	LTR55	LTR	ERVL?	chr9	51816012	51816014	+	ENSMUST00000126567.1,ENSMUSG00000053199.13	Arhgap20	ENSMUSG00000053199.13	ENSMUST00000126567.1	protein_coding	chr9:51816013-51829397
chr9	52168542	52168615	+	GC_rich	Low_complexity	Low_complexity	chr9	52168571	52168573	-	ENSMUST00000213645.1,ENSMUSG00000035164.8	Zc3h12c	ENSMUSG00000035164.8	ENSMUST00000213645.1	protein_coding	chr9:52111344-52168572
chr9	52756907	52756997	+	U6	snRNA	snRNA	chr9	52756907	52756909	+	ENSMUST00000175224.1,ENSMUSG00000092965.1	Gm22242	ENSMUSG00000092965.1	ENSMUST00000175224.1	snRNA	chr9:52756908-52757025
chr9	53164109	53164194	+	L1VL2	LINE	L1	chr9	53164187	53164189	+	ENSMUST00000213563.1,ENSMUSG00000111693.1	Gm47986	ENSMUSG00000111693.1	ENSMUST00000213563.1	processed_pseudogene	chr9:53164188-53164679
chr9	53400826	53400887	-	ORR1E	LTR	ERVL-MaLR	chr9	53400885	53400887	-	ENSMUST00000184489.1,ENSMUSG00000098362.1	Mir130c	ENSMUSG00000098362.1	ENSMUST00000184489.1	miRNA	chr9:53400805-53400886
chr9	53402230	53402377	-	MTD	LTR	ERVL-MaLR	chr9	53402324	53402326	+	ENSMUST00000214790.1,ENSMUSG00000005131.4	4930550C14Rik	ENSMUSG00000005131.4	ENSMUST00000214790.1	protein_coding	chr9:53402325-53403455
chr9	53669664	53670044	-	RLTR20C1_MM	LTR	ERVK	chr9	53670013	53670015	-	ENSMUST00000120122.7,ENSMUSG00000032030.16	Cul5	ENSMUSG00000032030.16	ENSMUST00000120122.7	protein_coding	chr9:53614582-53670014
chr9	53926899	53927052	-	B3A	SINE	B2	chr9	53927025	53927027	-	ENSMUST00000216880.1,ENSMUSG00000041986.16	Elmod1	ENSMUSG00000041986.16	ENSMUST00000216880.1	protein_coding	chr9:53925708-53927026
chr9	54202208	54202231	+	(TCC)n	Simple_repeat	Simple_repeat	chr9	54202220	54202222	-	ENSMUST00000216974.1,ENSMUSG00000032274.9	Cyp19a1	ENSMUSG00000032274.9	ENSMUST00000216974.1	protein_coding	chr9:54193285-54202221
chr9	54537184	54537362	+	7SK	RNA	RNA	chr9	54537184	54537186	+	ENSMUST00000157176.1,ENSMUSG00000087801.1	Gm25980	ENSMUSG00000087801.1	ENSMUST00000157176.1	misc_RNA	chr9:54537185-54537402
chr9	54560218	54560260	+	(CGGGGG)n	Simple_repeat	Simple_repeat	chr9	54560217	54560219	-	ENSMUST00000041901.6,ENSMUSG00000037493.6	Cib2	ENSMUSG00000037493.6	ENSMUST00000041901.6	protein_coding	chr9:54544794-54560218
chr9	54720767	54720922	+	B1_Mur1	SINE	Alu	chr9	54720813	54720815	-	ENSMUST00000144365.1,ENSMUSG00000061559.15	Wdr61	ENSMUSG00000061559.15	ENSMUST00000144365.1	protein_coding	chr9:54719220-54720814
chr9	54863761	54863853	+	C-rich	Low_complexity	Low_complexity	chr9	54863788	54863790	+	ENSMUST00000034843.8,ENSMUSG00000032293.8	Ireb2	ENSMUSG00000032293.8	ENSMUST00000034843.8	protein_coding	chr9:54863789-54912530
chr9	54902020	54902224	-	L1MA4	LINE	L1	chr9	54902204	54902206	+	ENSMUST00000213482.1,ENSMUSG00000032293.8	Ireb2	ENSMUSG00000032293.8	ENSMUST00000213482.1	protein_coding	chr9:54902205-54906147
chr9	55030582	55030927	+	MTD	LTR	ERVL-MaLR	chr9	55030782	55030784	+	ENSMUST00000217609.1,ENSMUSG00000111050.1	Gm47877	ENSMUSG00000111050.1	ENSMUST00000217609.1	antisense	chr9:55030783-55039429
chr9	55325151	55325330	-	MTD	LTR	ERVL-MaLR	chr9	55325186	55325188	-	ENSMUST00000133659.1,ENSMUSG00000032311.17	Nrg4	ENSMUSG00000032311.17	ENSMUST00000133659.1	protein_coding	chr9:55306204-55325187
chr9	55326774	55326957	+	G-rich	Low_complexity	Low_complexity	chr9	55326843	55326845	-	ENSMUST00000156112.7,ENSMUSG00000032311.17	Nrg4	ENSMUSG00000032311.17	ENSMUST00000156112.7	protein_coding	chr9:55242064-55326844
chr9	55326774	55326957	+	G-rich	Low_complexity	Low_complexity	chr9	55326912	55326914	+	ENSMUST00000085754.9,ENSMUSG00000032313.11	Tmem266	ENSMUSG00000032313.11	ENSMUST00000085754.9	protein_coding	chr9:55326913-55438345
chr9	55326774	55326957	+	G-rich	Low_complexity	Low_complexity	chr9	55326948	55326950	+	ENSMUST00000034862.4,ENSMUSG00000032313.11	Tmem266	ENSMUSG00000032313.11	ENSMUST00000034862.4	protein_coding	chr9:55326949-55438345
chr9	55555621	55555712	-	U6	snRNA	snRNA	chr9	55555711	55555713	-	ENSMUST00000082538.1,ENSMUSG00000064472.1	Gm23407	ENSMUSG00000064472.1	ENSMUST00000082538.1	snRNA	chr9:55555622-55555712
chr9	55791955	55792490	+	Lx2B2	LINE	L1	chr9	55792309	55792311	-	ENSMUST00000215323.1,ENSMUSG00000034007.10	Scaper	ENSMUSG00000034007.10	ENSMUST00000215323.1	protein_coding	chr9:55743629-55792310
chr9	55938119	55938164	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	55938118	55938120	-	ENSMUST00000216595.1,ENSMUSG00000034007.10	Scaper	ENSMUSG00000034007.10	ENSMUST00000216595.1	protein_coding	chr9:55550756-55938119
chr9	56223571	56223963	-	LSU-rRNA_Hsa	rRNA	rRNA	chr9	56223770	56223772	-	ENSMUST00000102326.1,ENSMUSG00000076281.1	Gm24270	ENSMUSG00000076281.1	ENSMUST00000102326.1	miRNA	chr9:56223715-56223771
chr9	56769044	56769227	+	B2_Mm2	SINE	B2	chr9	56769122	56769124	-	ENSMUST00000210995.1,ENSMUSG00000049556.5	Lingo1	ENSMUSG00000049556.5	ENSMUST00000210995.1	protein_coding	chr9:56685190-56769123
chr9	56796138	56796187	+	(TG)n	Simple_repeat	Simple_repeat	chr9	56796137	56796139	-	ENSMUST00000210032.1,ENSMUSG00000049556.5	Lingo1	ENSMUSG00000049556.5	ENSMUST00000210032.1	protein_coding	chr9:56618475-56796138
chr9	56931495	56931650	-	RLTR51A_Mm	LTR	ERVK?	chr9	56931630	56931632	+	ENSMUST00000213112.1,ENSMUSG00000111629.1	4930442G15Rik	ENSMUSG00000111629.1	ENSMUST00000213112.1	lincRNA	chr9:56931631-56933545
chr9	56994844	56994955	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr9	56994922	56994924	+	ENSMUST00000034832.7,ENSMUSG00000032290.7	Ptpn9	ENSMUSG00000032290.7	ENSMUST00000034832.7	protein_coding	chr9:56994923-57062807
chr9	57059326	57059586	-	Lx9	LINE	L1	chr9	57059437	57059439	+	ENSMUST00000215707.1,ENSMUSG00000032290.7	Ptpn9	ENSMUSG00000032290.7	ENSMUST00000215707.1	protein_coding	chr9:57059438-57061206
chr9	57081036	57081211	-	L1MB3	LINE	L1	chr9	57081157	57081159	+	ENSMUST00000168502.7,ENSMUSG00000042557.14	Sin3a	ENSMUSG00000042557.14	ENSMUST00000168502.7	protein_coding	chr9:57081158-57128366
chr9	57262609	57262646	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	57262611	57262613	-	ENSMUST00000034846.6,ENSMUSG00000032300.7	1700017B05Rik	ENSMUSG00000032300.7	ENSMUST00000034846.6	protein_coding	chr9:57253117-57262612
chr9	57424988	57425618	+	RMER1B	Other	Other	chr9	57425329	57425331	-	ENSMUST00000214519.1,ENSMUSG00000063849.6	Ppcdc	ENSMUSG00000063849.6	ENSMUST00000214519.1	protein_coding	chr9:57420163-57425330
chr9	57549573	57549775	+	B3	SINE	B2	chr9	57549671	57549673	-	ENSMUST00000145543.1,ENSMUSG00000032306.14	Mpi	ENSMUSG00000032306.14	ENSMUST00000145543.1	protein_coding	chr9:57548590-57549672
chr9	57586627	57586723	-	MIRb	SINE	MIR	chr9	57586717	57586719	+	ENSMUST00000216667.1,ENSMUSG00000040188.10	Scamp2	ENSMUSG00000040188.10	ENSMUST00000216667.1	protein_coding	chr9:57586718-57587732
chr9	57590586	57590642	-	B1_Mm	SINE	Alu	chr9	57590633	57590635	+	ENSMUST00000215146.1,ENSMUSG00000032308.9	Ulk3	ENSMUSG00000032308.9	ENSMUST00000215146.1	protein_coding	chr9:57590634-57592069
chr9	57633952	57634199	-	MIRb	SINE	MIR	chr9	57634066	57634068	-	ENSMUST00000217314.1,ENSMUSG00000032312.7	Csk	ENSMUSG00000032312.7	ENSMUST00000217314.1	protein_coding	chr9:57626647-57634067
chr9	57687159	57688176	+	RMER1B	Other	Other	chr9	57687927	57687929	+	ENSMUST00000216433.1,ENSMUSG00000032315.6	Cyp1a1	ENSMUSG00000032315.6	ENSMUST00000216433.1	protein_coding	chr9:57687928-57703821
chr9	58454719	58455167	-	RLTR41A2	LTR	ERV1	chr9	58455121	58455123	+	ENSMUST00000181967.2,ENSMUSG00000097651.2	4930461G14Rik	ENSMUSG00000097651.2	ENSMUST00000181967.2	lincRNA	chr9:58455122-58469635
chr9	58582313	58582406	+	C-rich	Low_complexity	Low_complexity	chr9	58582373	58582375	+	ENSMUST00000177380.7,ENSMUSG00000032336.17	Nptn	ENSMUSG00000032336.17	ENSMUST00000177380.7	protein_coding	chr9:58582374-58640680
chr9	58582313	58582406	+	C-rich	Low_complexity	Low_complexity	chr9	58582405	58582407	+	ENSMUST00000176557.7,ENSMUSG00000032336.17	Nptn	ENSMUSG00000032336.17	ENSMUST00000176557.7	protein_coding	chr9:58582406-58652878
chr9	58659236	58659450	-	Charlie1a	DNA	hAT-Charlie	chr9	58659291	58659293	-	ENSMUST00000175792.7,ENSMUSG00000074269.10	Rec114	ENSMUSG00000074269.10	ENSMUST00000175792.7	protein_coding	chr9:58652850-58659292
chr9	58664110	58664299	-	Lx10	LINE	L1	chr9	58664268	58664270	-	ENSMUST00000187632.1,ENSMUSG00000074269.10	Rec114	ENSMUSG00000074269.10	ENSMUST00000187632.1	protein_coding	chr9:58652878-58664269
chr9	59234802	59235087	+	B4A	SINE	B4	chr9	59235070	59235072	-	ENSMUST00000215275.1,ENSMUSG00000110789.1	Gm33053	ENSMUSG00000110789.1	ENSMUST00000215275.1	lincRNA	chr9:59191410-59235071
chr9	59406033	59406086	+	T-rich	Low_complexity	Low_complexity	chr9	59406052	59406054	-	ENSMUST00000168456.1,ENSMUSG00000025234.11	Arih1	ENSMUSG00000025234.11	ENSMUST00000168456.1	protein_coding	chr9:59394970-59406053
chr9	59486083	59486116	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	59486082	59486084	-	ENSMUST00000168982.1,ENSMUSG00000025234.11	Arih1	ENSMUSG00000025234.11	ENSMUST00000168982.1	protein_coding	chr9:59436624-59486083
chr9	59525482	59525665	-	RMER17A	LTR	ERVK	chr9	59525500	59525502	-	ENSMUST00000055345.8,ENSMUSG00000049526.8	Tmem202	ENSMUSG00000049526.8	ENSMUST00000055345.8	protein_coding	chr9:59518685-59525501
chr9	59617341	59617403	+	GC_rich	Low_complexity	Low_complexity	chr9	59617360	59617362	+	ENSMUST00000216351.1,ENSMUSG00000025237.16	Parp6	ENSMUSG00000025237.16	ENSMUST00000216351.1	protein_coding	chr9:59617361-59650267
chr9	59617341	59617403	+	GC_rich	Low_complexity	Low_complexity	chr9	59617361	59617363	+	ENSMUST00000217195.1,ENSMUSG00000025237.16	Parp6	ENSMUSG00000025237.16	ENSMUST00000217195.1	protein_coding	chr9:59617362-59625855
chr9	59617341	59617403	+	GC_rich	Low_complexity	Low_complexity	chr9	59617376	59617378	+	ENSMUST00000215381.1,ENSMUSG00000025237.16	Parp6	ENSMUSG00000025237.16	ENSMUST00000215381.1	protein_coding	chr9:59617377-59625018
chr9	59617341	59617403	+	GC_rich	Low_complexity	Low_complexity	chr9	59617379	59617381	+	ENSMUST00000214984.1,ENSMUSG00000025237.16	Parp6	ENSMUSG00000025237.16	ENSMUST00000214984.1	protein_coding	chr9:59617380-59624862
chr9	59621425	59621615	+	B2_Mm1a	SINE	B2	chr9	59621555	59621557	+	ENSMUST00000213419.1,ENSMUSG00000025237.16	Parp6	ENSMUSG00000025237.16	ENSMUST00000213419.1	protein_coding	chr9:59621556-59627583
chr9	59648025	59648473	-	RMER16	LTR	ERVK	chr9	59648196	59648198	+	ENSMUST00000217284.1,ENSMUSG00000025237.16	Parp6	ENSMUSG00000025237.16	ENSMUST00000217284.1	protein_coding	chr9:59648197-59649532
chr9	59707720	59707855	+	L1M5	LINE	L1	chr9	59707763	59707765	+	ENSMUST00000098661.9,ENSMUSG00000074259.10	Gramd2	ENSMUSG00000074259.10	ENSMUST00000098661.9	protein_coding	chr9:59707764-59716424
chr9	60334027	60334365	+	MTE2a	LTR	ERVL-MaLR	chr9	60334141	60334143	+	ENSMUST00000214235.1,ENSMUSG00000111296.1	2010001M07Rik	ENSMUSG00000111296.1	ENSMUST00000214235.1	antisense	chr9:60334142-60334968
chr9	60393725	60393766	+	(TTTC)n	Simple_repeat	Simple_repeat	chr9	60393756	60393758	-	ENSMUST00000216899.1,ENSMUSG00000111065.1	Gm47676	ENSMUSG00000111065.1	ENSMUST00000216899.1	TEC	chr9:60391793-60393757
chr9	60598588	60598703	+	(TG)n	Simple_repeat	Simple_repeat	chr9	60598588	60598590	-	ENSMUST00000136388.1,ENSMUSG00000047766.15	Lrrc49	ENSMUSG00000047766.15	ENSMUST00000136388.1	protein_coding	chr9:60587822-60598589
chr9	60919032	60919419	+	MTC	LTR	ERVL-MaLR	chr9	60919222	60919224	+	ENSMUST00000216374.1,ENSMUSG00000111444.1	Gm47923	ENSMUSG00000111444.1	ENSMUST00000216374.1	lincRNA	chr9:60919223-60949373
chr9	61032148	61032214	+	C-rich	Low_complexity	Low_complexity	chr9	61032211	61032213	+	ENSMUST00000216170.1,ENSMUSG00000111147.1	Gm33699	ENSMUSG00000111147.1	ENSMUST00000216170.1	lincRNA	chr9:61032212-61059116
chr9	61110338	61110386	+	(CA)n	Simple_repeat	Simple_repeat	chr9	61110385	61110387	+	ENSMUST00000215586.1,ENSMUSG00000111169.1	Gm34004	ENSMUSG00000111169.1	ENSMUST00000215586.1	lincRNA	chr9:61110386-61115775
chr9	61126946	61127035	+	PB1D10	SINE	Alu	chr9	61127030	61127032	-	ENSMUST00000214108.1,ENSMUSG00000111354.1	Gm33914	ENSMUSG00000111354.1	ENSMUST00000214108.1	lincRNA	chr9:61102229-61127031
chr9	61402443	61402653	+	ID_B1	SINE	B4	chr9	61402460	61402462	+	ENSMUST00000159140.1,ENSMUSG00000032280.16	Tle3	ENSMUSG00000032280.16	ENSMUST00000159140.1	protein_coding	chr9:61402461-61417835
chr9	61442541	61442647	+	ID_B1	SINE	B4	chr9	61442590	61442592	+	ENSMUST00000214224.1,ENSMUSG00000111033.1	Gm34322	ENSMUSG00000111033.1	ENSMUST00000214224.1	lincRNA	chr9:61442591-61455947
chr9	61442543	61442663	+	PB1D11	SINE	Alu	chr9	61442590	61442592	+	ENSMUST00000214224.1,ENSMUSG00000111033.1	Gm34322	ENSMUSG00000111033.1	ENSMUST00000214224.1	lincRNA	chr9:61442591-61455947
chr9	61932526	61932664	-	B1_Mus1	SINE	Alu	chr9	61932537	61932539	-	ENSMUST00000215965.1,ENSMUSG00000032254.10	Kif23	ENSMUSG00000032254.10	ENSMUST00000215965.1	protein_coding	chr9:61927552-61932538
chr9	62020588	62020660	+	7SK	RNA	RNA	chr9	62020593	62020595	+	ENSMUST00000158118.1,ENSMUSG00000088743.1	Gm23221	ENSMUSG00000088743.1	ENSMUST00000158118.1	misc_RNA	chr9:62020594-62020686
chr9	62070795	62070878	-	MER119	DNA	hAT-Charlie	chr9	62070839	62070841	-	ENSMUST00000186514.1,ENSMUSG00000032252.14	Glce	ENSMUSG00000032252.14	ENSMUST00000186514.1	protein_coding	chr9:62060011-62070840
chr9	62242596	62242945	-	ORR1B2	LTR	ERVL-MaLR	chr9	62242866	62242868	-	ENSMUST00000158361.1,ENSMUSG00000088986.1	Gm25603	ENSMUSG00000088986.1	ENSMUST00000158361.1	miRNA	chr9:62242763-62242867
chr9	62298320	62298844	+	RMER19C	LTR	ERVK	chr9	62298501	62298503	+	ENSMUST00000216565.1,ENSMUSG00000111193.1	Gm35288	ENSMUSG00000111193.1	ENSMUST00000216565.1	lincRNA	chr9:62298502-62336649
chr9	62449089	62449511	+	RLTR10	LTR	ERVK	chr9	62449147	62449149	-	ENSMUST00000174439.1,ENSMUSG00000041729.15	Coro2b	ENSMUSG00000041729.15	ENSMUST00000174439.1	protein_coding	chr9:62429334-62449148
chr9	62515028	62515115	+	5S	rRNA	rRNA	chr9	62515028	62515030	+	ENSMUST00000122591.1,ENSMUSG00000084540.1	n-R5s84	ENSMUSG00000084540.1	ENSMUST00000122591.1	rRNA	chr9:62515029-62515137
chr9	62804470	62804586	-	B1F1	SINE	Alu	chr9	62804477	62804479	+	ENSMUST00000181302.1,ENSMUSG00000097672.1	Gm26609	ENSMUSG00000097672.1	ENSMUST00000181302.1	lincRNA	chr9:62804478-62808234
chr9	62861831	62862323	-	MT2_Mm	LTR	ERVL	chr9	62862023	62862025	-	ENSMUST00000132250.7,ENSMUSG00000074250.11	Gm10653	ENSMUSG00000074250.11	ENSMUST00000132250.7	transcribed_processed_pseudogene	chr9:62841477-62862024
chr9	62867807	62868299	-	MT2_Mm	LTR	ERVL	chr9	62867999	62868001	-	ENSMUST00000156423.1,ENSMUSG00000074250.11	Gm10653	ENSMUSG00000074250.11	ENSMUST00000156423.1	transcribed_processed_pseudogene	chr9:62841477-62868000
chr9	63027559	63027716	+	U1	snRNA	snRNA	chr9	63027559	63027561	+	ENSMUST00000082921.1,ENSMUSG00000064855.1	Gm24526	ENSMUSG00000064855.1	ENSMUST00000082921.1	snRNA	chr9:63027560-63027717
chr9	63082667	63083025	-	MTC	LTR	ERVL-MaLR	chr9	63082972	63082974	-	ENSMUST00000214934.1,ENSMUSG00000111144.1	Gm48193	ENSMUSG00000111144.1	ENSMUST00000214934.1	lincRNA	chr9:63080267-63082973
chr9	63133282	63133389	+	U6	snRNA	snRNA	chr9	63133282	63133284	+	ENSMUST00000179535.1,ENSMUSG00000094201.1	Gm25064	ENSMUSG00000094201.1	ENSMUST00000179535.1	snRNA	chr9:63133283-63133389
chr9	64041338	64041667	-	MLT1D	LTR	ERVL-MaLR	chr9	64041464	64041466	-	ENSMUST00000176450.1,ENSMUSG00000093616.1	1700055C04Rik	ENSMUSG00000093616.1	ENSMUST00000176450.1	processed_transcript	chr9:64038465-64041465
chr9	64048495	64048597	+	5S	rRNA	rRNA	chr9	64048495	64048497	+	ENSMUST00000158363.1,ENSMUSG00000088988.1	Gm25606	ENSMUSG00000088988.1	ENSMUST00000158363.1	rRNA	chr9:64048496-64048590
chr9	64049705	64049883	-	MIRb	SINE	MIR	chr9	64049828	64049830	+	ENSMUST00000181151.1,ENSMUSG00000097036.1	1110036E04Rik	ENSMUSG00000097036.1	ENSMUST00000181151.1	lincRNA	chr9:64049829-64054100
chr9	64121488	64121628	-	B1_Mus1	SINE	Alu	chr9	64121605	64121607	+	ENSMUST00000118215.2,ENSMUSG00000032401.15	Lctl	ENSMUSG00000032401.15	ENSMUST00000118215.2	protein_coding	chr9:64121606-64138105
chr9	64155657	64155804	-	B1_Mus2	SINE	Alu	chr9	64155749	64155751	-	ENSMUST00000148428.1,ENSMUSG00000032400.18	Zwilch	ENSMUSG00000032400.18	ENSMUST00000148428.1	protein_coding	chr9:64147393-64155750
chr9	64228327	64228479	-	B1_Mur4	SINE	Alu	chr9	64228338	64228340	+	ENSMUST00000214497.1,ENSMUSG00000111160.1	Gm48855	ENSMUSG00000111160.1	ENSMUST00000214497.1	lincRNA	chr9:64228339-64230795
chr9	64971665	64971813	+	B1_Mus1	SINE	Alu	chr9	64971792	64971794	-	ENSMUST00000175378.1,ENSMUSG00000093119.1	Gm25640	ENSMUSG00000093119.1	ENSMUST00000175378.1	miRNA	chr9:64971669-64971793
chr9	65101463	65101533	+	GC_rich	Low_complexity	Low_complexity	chr9	65101485	65101487	+	ENSMUST00000213533.1,ENSMUSG00000032816.15	Igdcc4	ENSMUSG00000032816.15	ENSMUST00000213533.1	protein_coding	chr9:65101486-65137940
chr9	65101463	65101533	+	GC_rich	Low_complexity	Low_complexity	chr9	65101485	65101487	+	ENSMUST00000035499.4,ENSMUSG00000032816.15	Igdcc4	ENSMUSG00000032816.15	ENSMUST00000035499.4	protein_coding	chr9:65101486-65137940
chr9	65101463	65101533	+	GC_rich	Low_complexity	Low_complexity	chr9	65101485	65101487	+	ENSMUST00000077696.12,ENSMUSG00000032816.15	Igdcc4	ENSMUSG00000032816.15	ENSMUST00000077696.12	protein_coding	chr9:65101486-65137940
chr9	65101463	65101533	+	GC_rich	Low_complexity	Low_complexity	chr9	65101494	65101496	+	ENSMUST00000216542.1,ENSMUSG00000032816.15	Igdcc4	ENSMUSG00000032816.15	ENSMUST00000216542.1	protein_coding	chr9:65101495-65119247
chr9	65101463	65101533	+	GC_rich	Low_complexity	Low_complexity	chr9	65101522	65101524	+	ENSMUST00000213423.1,ENSMUSG00000032816.15	Igdcc4	ENSMUSG00000032816.15	ENSMUST00000213423.1	protein_coding	chr9:65101523-65127603
chr9	65196570	65196687	-	U5	snRNA	snRNA	chr9	65196686	65196688	-	ENSMUST00000101817.1,ENSMUSG00000095738.1	Gm25313	ENSMUSG00000095738.1	ENSMUST00000101817.1	snRNA	chr9:65196572-65196687
chr9	65201725	65201841	-	U5	snRNA	snRNA	chr9	65201840	65201842	-	ENSMUST00000093721.1,ENSMUSG00000095892.1	Rnu5g	ENSMUSG00000095892.1	ENSMUST00000093721.1	snRNA	chr9:65201726-65201841
chr9	65294250	65294292	+	G-rich	Low_complexity	Low_complexity	chr9	65294259	65294261	+	ENSMUST00000015501.10,ENSMUSG00000015357.10	Clpx	ENSMUSG00000015357.10	ENSMUST00000015501.10	protein_coding	chr9:65294260-65330657
chr9	65364745	65364891	-	B1_Mur4	SINE	Alu	chr9	65364886	65364888	+	ENSMUST00000216005.1,ENSMUSG00000111092.1	Gm17875	ENSMUSG00000111092.1	ENSMUST00000216005.1	processed_pseudogene	chr9:65364887-65365946
chr9	65368195	65368344	-	B1_Mm	SINE	Alu	chr9	65368199	65368201	+	ENSMUST00000215152.1,ENSMUSG00000086228.2	Ubap1l	ENSMUSG00000086228.2	ENSMUST00000215152.1	protein_coding	chr9:65368200-65371642
chr9	65443295	65443570	-	RLTR11A	LTR	ERVK	chr9	65443540	65443542	+	ENSMUST00000130057.1,ENSMUSG00000059183.12	Mtfmt	ENSMUSG00000059183.12	ENSMUST00000130057.1	protein_coding	chr9:65443541-65452125
chr9	65453427	65453691	+	B4A	SINE	B4	chr9	65453614	65453616	+	ENSMUST00000214308.1,ENSMUSG00000111722.1	Gm47270	ENSMUSG00000111722.1	ENSMUST00000214308.1	lincRNA	chr9:65453615-65460399
chr9	65502617	65502881	+	B4A	SINE	B4	chr9	65502654	65502656	-	ENSMUST00000217144.1,ENSMUSG00000066510.5	Ankdd1a	ENSMUSG00000066510.5	ENSMUST00000217144.1	protein_coding	chr9:65488470-65502655
chr9	65529740	65529827	-	MIRc	SINE	MIR	chr9	65529805	65529807	-	ENSMUST00000216282.1,ENSMUSG00000111818.1	Gm17749	ENSMUSG00000111818.1	ENSMUST00000216282.1	processed_transcript	chr9:65521106-65529806
chr9	65579017	65579082	-	MIR3	SINE	MIR	chr9	65579033	65579035	-	ENSMUST00000214740.1,ENSMUSG00000050721.9	Plekho2	ENSMUSG00000050721.9	ENSMUST00000214740.1	protein_coding	chr9:65552698-65579034
chr9	65630455	65630560	+	GC_rich	Low_complexity	Low_complexity	chr9	65630558	65630560	+	ENSMUST00000055844.9,ENSMUSG00000032387.15	Rbpms2	ENSMUSG00000032387.15	ENSMUST00000055844.9	protein_coding	chr9:65630559-65660526
chr9	65658944	65659030	-	MIRb	SINE	MIR	chr9	65658976	65658978	+	ENSMUST00000216769.1,ENSMUSG00000032387.15	Rbpms2	ENSMUSG00000032387.15	ENSMUST00000216769.1	protein_coding	chr9:65658977-65659809
chr9	65900200	65900293	+	U6	snRNA	snRNA	chr9	65900200	65900202	+	ENSMUST00000083367.1,ENSMUSG00000065301.1	Gm23248	ENSMUSG00000065301.1	ENSMUST00000083367.1	snRNA	chr9:65900201-65900308
chr9	65909012	65909063	+	CT-rich	Low_complexity	Low_complexity	chr9	65909013	65909015	+	ENSMUST00000207167.1,ENSMUSG00000032384.16	Csnk1g1	ENSMUSG00000032384.16	ENSMUST00000207167.1	protein_coding	chr9:65909014-66002088
chr9	65909012	65909063	+	CT-rich	Low_complexity	Low_complexity	chr9	65909019	65909021	+	ENSMUST00000154589.1,ENSMUSG00000032384.16	Csnk1g1	ENSMUSG00000032384.16	ENSMUST00000154589.1	protein_coding	chr9:65909020-65958666
chr9	65909012	65909063	+	CT-rich	Low_complexity	Low_complexity	chr9	65909029	65909031	+	ENSMUST00000124688.7,ENSMUSG00000032384.16	Csnk1g1	ENSMUSG00000032384.16	ENSMUST00000124688.7	protein_coding	chr9:65909030-65975668
chr9	66091303	66091437	-	ID_B1	SINE	B4	chr9	66091346	66091348	-	ENSMUST00000132841.1,ENSMUSG00000032382.14	Snx1	ENSMUSG00000032382.14	ENSMUST00000132841.1	protein_coding	chr9:66089124-66091347
chr9	66268319	66268379	+	(TG)n	Simple_repeat	Simple_repeat	chr9	66268373	66268375	+	ENSMUST00000129778.1,ENSMUSG00000032380.8	Dapk2	ENSMUSG00000032380.8	ENSMUST00000129778.1	protein_coding	chr9:66268374-66271715
chr9	66350440	66350485	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	66350449	66350451	+	ENSMUST00000144280.1,ENSMUSG00000038664.16	Herc1	ENSMUSG00000038664.16	ENSMUST00000144280.1	protein_coding	chr9:66350450-66374070
chr9	66796822	66797271	-	Lx8	LINE	L1	chr9	66797038	66797040	+	ENSMUST00000098612.2,ENSMUSG00000074232.2	Gm10647	ENSMUSG00000074232.2	ENSMUST00000098612.2	protein_coding	chr9:66797039-66799074
chr9	66804336	66804722	+	RMER17C	LTR	ERVK	chr9	66804358	66804360	-	ENSMUST00000169153.1,ENSMUSG00000092131.1	BC050972	ENSMUSG00000092131.1	ENSMUST00000169153.1	antisense	chr9:66798940-66804359
chr9	66948462	66948568	+	AT_rich	Low_complexity	Low_complexity	chr9	66948562	66948564	+	ENSMUST00000123931.1,ENSMUSG00000036781.13	Rps27l	ENSMUSG00000036781.13	ENSMUST00000123931.1	protein_coding	chr9:66948563-66949511
chr9	67043885	67043936	+	G-rich	Low_complexity	Low_complexity	chr9	67043906	67043908	-	ENSMUST00000113696.7,ENSMUSG00000032366.15	Tpm1	ENSMUSG00000032366.15	ENSMUST00000113696.7	protein_coding	chr9:67022590-67043907
chr9	67133355	67133763	+	MTC	LTR	ERVL-MaLR	chr9	67133559	67133561	+	ENSMUST00000215645.1,ENSMUSG00000111556.1	Gm19299	ENSMUSG00000111556.1	ENSMUST00000215645.1	lincRNA	chr9:67133560-67213918
chr9	67133355	67133763	+	MTC	LTR	ERVL-MaLR	chr9	67133560	67133562	+	ENSMUST00000215724.1,ENSMUSG00000111556.1	Gm19299	ENSMUSG00000111556.1	ENSMUST00000215724.1	lincRNA	chr9:67133561-67163788
chr9	67748730	67749141	+	RMER19B2	LTR	ERVK	chr9	67748763	67748765	-	ENSMUST00000216858.1,ENSMUSG00000111272.1	Gm7787	ENSMUSG00000111272.1	ENSMUST00000216858.1	processed_pseudogene	chr9:67748077-67748764
chr9	68461338	68461445	-	U6	snRNA	snRNA	chr9	68461444	68461446	-	ENSMUST00000083229.1,ENSMUSG00000096639.1	Gm22169	ENSMUSG00000096639.1	ENSMUST00000083229.1	snRNA	chr9:68461339-68461445
chr9	68520165	68520711	+	MLT1F2	LTR	ERVL-MaLR	chr9	68520199	68520201	-	ENSMUST00000214059.1,ENSMUSG00000111303.1	4930502A04Rik	ENSMUSG00000111303.1	ENSMUST00000214059.1	lincRNA	chr9:68470902-68520200
chr9	69364220	69364267	+	(CAG)n	Simple_repeat	Simple_repeat	chr9	69364246	69364248	-	ENSMUST00000152570.1,ENSMUSG00000086648.1	Gm15511	ENSMUSG00000086648.1	ENSMUST00000152570.1	antisense	chr9:69348889-69364247
chr9	69486766	69486789	+	(TG)n	Simple_repeat	Simple_repeat	chr9	69486782	69486784	+	ENSMUST00000154591.1,ENSMUSG00000032231.14	Anxa2	ENSMUSG00000032231.14	ENSMUST00000154591.1	protein_coding	chr9:69486783-69488108
chr9	70103062	70103141	+	RSINE1	SINE	B4	chr9	70103075	70103077	-	ENSMUST00000145427.1,ENSMUSG00000032224.15	Fam81a	ENSMUSG00000032224.15	ENSMUST00000145427.1	protein_coding	chr9:70102550-70103076
chr9	70141563	70141597	+	GC_rich	Low_complexity	Low_complexity	chr9	70141577	70141579	-	ENSMUST00000034749.15,ENSMUSG00000032224.15	Fam81a	ENSMUSG00000032224.15	ENSMUST00000034749.15	protein_coding	chr9:70088511-70141578
chr9	70196989	70197599	-	RLTR17	LTR	ERVK	chr9	70197547	70197549	-	ENSMUST00000180561.1,ENSMUSG00000097720.1	Gm26849	ENSMUSG00000097720.1	ENSMUST00000180561.1	lincRNA	chr9:70169986-70197548
chr9	70503321	70503460	+	C-rich	Low_complexity	Low_complexity	chr9	70503353	70503355	-	ENSMUST00000215848.1,ENSMUSG00000032217.13	Rnf111	ENSMUSG00000032217.13	ENSMUST00000215848.1	protein_coding	chr9:70425429-70503354
chr9	70503321	70503460	+	C-rich	Low_complexity	Low_complexity	chr9	70503353	70503355	-	ENSMUST00000113595.1,ENSMUSG00000032217.13	Rnf111	ENSMUSG00000032217.13	ENSMUST00000113595.1	protein_coding	chr9:70425430-70503354
chr9	70503321	70503460	+	C-rich	Low_complexity	Low_complexity	chr9	70503377	70503379	-	ENSMUST00000213647.1,ENSMUSG00000032217.13	Rnf111	ENSMUSG00000032217.13	ENSMUST00000213647.1	protein_coding	chr9:70425430-70503378
chr9	70503687	70503739	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	70503724	70503726	-	ENSMUST00000034739.11,ENSMUSG00000032217.13	Rnf111	ENSMUSG00000032217.13	ENSMUST00000034739.11	protein_coding	chr9:70425429-70503725
chr9	70503687	70503739	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	70503723	70503725	-	ENSMUST00000213694.1,ENSMUSG00000032217.13	Rnf111	ENSMUSG00000032217.13	ENSMUST00000213694.1	protein_coding	chr9:70455914-70503724
chr9	70517199	70517303	+	U6	snRNA	snRNA	chr9	70517199	70517201	+	ENSMUST00000157659.1,ENSMUSG00000088284.1	Gm23588	ENSMUSG00000088284.1	ENSMUST00000157659.1	snRNA	chr9:70517200-70517298
chr9	70521597	70521704	-	U6	snRNA	snRNA	chr9	70521703	70521705	-	ENSMUST00000083236.1,ENSMUSG00000094366.1	Gm23730	ENSMUSG00000094366.1	ENSMUST00000083236.1	snRNA	chr9:70521598-70521704
chr9	70537710	70537814	-	B2_Mm2	SINE	B2	chr9	70537813	70537815	+	ENSMUST00000082987.1,ENSMUSG00000064921.1	Gm22229	ENSMUSG00000064921.1	ENSMUST00000082987.1	snRNA	chr9:70537814-70537921
chr9	70537813	70537916	+	U6	snRNA	snRNA	chr9	70537813	70537815	+	ENSMUST00000082987.1,ENSMUSG00000064921.1	Gm22229	ENSMUSG00000064921.1	ENSMUST00000082987.1	snRNA	chr9:70537814-70537921
chr9	70542776	70542807	+	GC_rich	Low_complexity	Low_complexity	chr9	70542793	70542795	+	ENSMUST00000215714.1,ENSMUSG00000032212.10	Sltm	ENSMUSG00000032212.10	ENSMUST00000215714.1	protein_coding	chr9:70542794-70544747
chr9	70542819	70542876	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	70542858	70542860	+	ENSMUST00000213808.1,ENSMUSG00000032212.10	Sltm	ENSMUSG00000032212.10	ENSMUST00000213808.1	protein_coding	chr9:70542859-70579451
chr9	70542819	70542876	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	70542869	70542871	+	ENSMUST00000049263.8,ENSMUSG00000032212.10	Sltm	ENSMUSG00000032212.10	ENSMUST00000049263.8	protein_coding	chr9:70542870-70592232
chr9	70678977	70679034	+	G-rich	Low_complexity	Low_complexity	chr9	70678996	70678998	+	ENSMUST00000140205.7,ENSMUSG00000054693.14	Adam10	ENSMUSG00000054693.14	ENSMUST00000140205.7	protein_coding	chr9:70678997-70778382
chr9	70678977	70679034	+	G-rich	Low_complexity	Low_complexity	chr9	70678996	70678998	+	ENSMUST00000067880.12,ENSMUSG00000054693.14	Adam10	ENSMUSG00000054693.14	ENSMUST00000067880.12	protein_coding	chr9:70678997-70780229
chr9	70678977	70679034	+	G-rich	Low_complexity	Low_complexity	chr9	70679015	70679017	+	ENSMUST00000144537.1,ENSMUSG00000054693.14	Adam10	ENSMUSG00000054693.14	ENSMUST00000144537.1	protein_coding	chr9:70679016-70748114
chr9	70799549	70799663	+	MER5A1	DNA	hAT-Charlie	chr9	70799636	70799638	-	ENSMUST00000157119.1,ENSMUSG00000087744.1	Gm25149	ENSMUSG00000087744.1	ENSMUST00000157119.1	miRNA	chr9:70799556-70799637
chr9	71841427	71841754	-	L1MA8	LINE	L1	chr9	71841735	71841737	-	ENSMUST00000192754.1,ENSMUSG00000104467.1	Gm37660	ENSMUSG00000104467.1	ENSMUST00000192754.1	TEC	chr9:71840005-71841736
chr9	71855155	71855300	+	B1_Mus2	SINE	Alu	chr9	71855202	71855204	-	ENSMUST00000195551.1,ENSMUSG00000102143.1	Gm38057	ENSMUSG00000102143.1	ENSMUST00000195551.1	TEC	chr9:71852001-71855203
chr9	71896381	71896400	+	(TG)n	Simple_repeat	Simple_repeat	chr9	71896395	71896397	-	ENSMUST00000183918.7,ENSMUSG00000032228.16	Tcf12	ENSMUSG00000032228.16	ENSMUST00000183918.7	protein_coding	chr9:71844273-71896396
chr9	72003693	72004038	+	Lx9	LINE	L1	chr9	72003802	72003804	-	ENSMUST00000192895.1,ENSMUSG00000104078.1	Gm37023	ENSMUSG00000104078.1	ENSMUST00000192895.1	TEC	chr9:72001378-72003803
chr9	72012646	72013469	+	Lx	LINE	L1	chr9	72013018	72013020	-	ENSMUST00000194599.1,ENSMUSG00000104432.1	A430027C01Rik	ENSMUSG00000104432.1	ENSMUST00000194599.1	TEC	chr9:72011376-72013019
chr9	72033149	72033241	+	(TA)n	Simple_repeat	Simple_repeat	chr9	72033197	72033199	+	ENSMUST00000104632.3,ENSMUSG00000077821.3	Gm27450	ENSMUSG00000077821.3	ENSMUST00000104632.3	miRNA	chr9:72033198-72033287
chr9	72043014	72043303	+	L1ME2	LINE	L1	chr9	72043234	72043236	-	ENSMUST00000195138.1,ENSMUSG00000102874.1	Gm37137	ENSMUSG00000102874.1	ENSMUST00000195138.1	TEC	chr9:72040552-72043235
chr9	72121805	72121904	-	U6	snRNA	snRNA	chr9	72121903	72121905	-	ENSMUST00000122670.1,ENSMUSG00000084619.1	Gm25045	ENSMUSG00000084619.1	ENSMUST00000122670.1	snRNA	chr9:72121806-72121904
chr9	72229726	72230591	-	RMER19B	LTR	ERVK	chr9	72230305	72230307	-	ENSMUST00000184383.1,ENSMUSG00000099190.1	Gm27188	ENSMUSG00000099190.1	ENSMUST00000184383.1	lincRNA	chr9:72207706-72230306
chr9	72274959	72274995	+	(TCC)n	Simple_repeat	Simple_repeat	chr9	72274978	72274980	+	ENSMUST00000184639.1,ENSMUSG00000038535.17	Zfp280d	ENSMUSG00000038535.17	ENSMUST00000184639.1	protein_coding	chr9:72274979-72287421
chr9	72274959	72274995	+	(TCC)n	Simple_repeat	Simple_repeat	chr9	72274980	72274982	+	ENSMUST00000183400.1,ENSMUSG00000038535.17	Zfp280d	ENSMUSG00000038535.17	ENSMUST00000183400.1	protein_coding	chr9:72274981-72299175
chr9	72307048	72307195	-	B1_Mm	SINE	Alu	chr9	72307146	72307148	+	ENSMUST00000183545.1,ENSMUSG00000038535.17	Zfp280d	ENSMUSG00000038535.17	ENSMUST00000183545.1	protein_coding	chr9:72307147-72309253
chr9	72315002	72315325	+	L1MA6	LINE	L1	chr9	72315130	72315132	+	ENSMUST00000193207.1,ENSMUSG00000102225.1	Gm37983	ENSMUSG00000102225.1	ENSMUST00000193207.1	TEC	chr9:72315131-72317136
chr9	72354916	72355113	-	B3A	SINE	B2	chr9	72355074	72355076	+	ENSMUST00000194202.1,ENSMUSG00000103133.1	Gm37303	ENSMUSG00000103133.1	ENSMUST00000194202.1	TEC	chr9:72355075-72356633
chr9	72360152	72360207	+	(TGG)n	Simple_repeat	Simple_repeat	chr9	72360201	72360203	+	ENSMUST00000183468.1,ENSMUSG00000038535.17	Zfp280d	ENSMUSG00000038535.17	ENSMUST00000183468.1	protein_coding	chr9:72360202-72363627
chr9	72384309	72384657	+	L1MD	LINE	L1	chr9	72384388	72384390	+	ENSMUST00000193900.1,ENSMUSG00000102925.1	Gm37150	ENSMUSG00000102925.1	ENSMUST00000193900.1	TEC	chr9:72384389-72387142
chr9	72441534	72441898	+	MLT2B4	LTR	ERVL	chr9	72441778	72441780	-	ENSMUST00000185191.1,ENSMUSG00000098778.1	Gm27231	ENSMUSG00000098778.1	ENSMUST00000185191.1	antisense	chr9:72441079-72441779
chr9	72475227	72475418	+	B2_Mm1a	SINE	B2	chr9	72475262	72475264	-	ENSMUST00000183399.7,ENSMUSG00000090626.9	Tex9	ENSMUSG00000090626.9	ENSMUST00000183399.7	protein_coding	chr9:72460344-72475263
chr9	72511205	72511352	+	B1_Mus1	SINE	Alu	chr9	72511333	72511335	-	ENSMUST00000179485.2,ENSMUSG00000095555.2	Gm28010	ENSMUSG00000095555.2	ENSMUST00000179485.2	miRNA	chr9:72511209-72511334
chr9	72532102	72532255	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr9	72532239	72532241	+	ENSMUST00000163401.8,ENSMUSG00000037674.15	Rfx7	ENSMUSG00000037674.15	ENSMUST00000163401.8	protein_coding	chr9:72532240-72622829
chr9	72532102	72532255	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr9	72532239	72532241	+	ENSMUST00000093820.9,ENSMUSG00000037674.15	Rfx7	ENSMUSG00000037674.15	ENSMUST00000093820.9	protein_coding	chr9:72532240-72622937
chr9	72532102	72532255	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr9	72532242	72532244	+	ENSMUST00000184851.1,ENSMUSG00000037674.15	Rfx7	ENSMUSG00000037674.15	ENSMUST00000184851.1	protein_coding	chr9:72532243-72605019
chr9	72532688	72532760	+	(TCC)n	Simple_repeat	Simple_repeat	chr9	72532734	72532736	+	ENSMUST00000184015.1,ENSMUSG00000037674.15	Rfx7	ENSMUSG00000037674.15	ENSMUST00000184015.1	protein_coding	chr9:72532735-72612486
chr9	72594754	72594931	+	B2_Mm2	SINE	B2	chr9	72594922	72594924	+	ENSMUST00000192251.1,ENSMUSG00000102672.1	Gm37105	ENSMUSG00000102672.1	ENSMUST00000192251.1	TEC	chr9:72594923-72597007
chr9	72633446	72633543	+	U6	snRNA	snRNA	chr9	72633446	72633448	+	ENSMUST00000082801.1,ENSMUSG00000064735.1	Gm23057	ENSMUSG00000064735.1	ENSMUST00000082801.1	snRNA	chr9:72633447-72633553
chr9	72662481	72662522	+	CT-rich	Low_complexity	Low_complexity	chr9	72662481	72662483	+	ENSMUST00000184450.7,ENSMUSG00000032216.14	Nedd4	ENSMUSG00000032216.14	ENSMUST00000184450.7	protein_coding	chr9:72662482-72720790
chr9	72662481	72662522	+	CT-rich	Low_complexity	Low_complexity	chr9	72662486	72662488	+	ENSMUST00000183375.7,ENSMUSG00000032216.14	Nedd4	ENSMUSG00000032216.14	ENSMUST00000183375.7	protein_coding	chr9:72662487-72712229
chr9	72662481	72662522	+	CT-rich	Low_complexity	Low_complexity	chr9	72662489	72662491	+	ENSMUST00000184386.1,ENSMUSG00000032216.14	Nedd4	ENSMUSG00000032216.14	ENSMUST00000184386.1	protein_coding	chr9:72662490-72663299
chr9	72668677	72668867	-	B2_Mm1a	SINE	B2	chr9	72668679	72668681	+	ENSMUST00000184333.1,ENSMUSG00000032216.14	Nedd4	ENSMUSG00000032216.14	ENSMUST00000184333.1	protein_coding	chr9:72668680-72720355
chr9	72869505	72869666	+	B4A	SINE	B4	chr9	72869651	72869653	+	ENSMUST00000192843.1,ENSMUSG00000102971.1	A730062M13Rik	ENSMUSG00000102971.1	ENSMUST00000192843.1	TEC	chr9:72869652-72871561
chr9	72888902	72889090	+	B2_Mm1t	SINE	B2	chr9	72889044	72889046	+	ENSMUST00000193259.1,ENSMUSG00000102330.1	Gm37234	ENSMUSG00000102330.1	ENSMUST00000193259.1	TEC	chr9:72889045-72890485
chr9	72925565	72925686	+	GC_rich	Low_complexity	Low_complexity	chr9	72925644	72925646	+	ENSMUST00000038489.5,ENSMUSG00000034910.5	Pygo1	ENSMUSG00000034910.5	ENSMUST00000038489.5	protein_coding	chr9:72925645-72952181
chr9	72969601	72969708	+	U6	snRNA	snRNA	chr9	72969601	72969603	+	ENSMUST00000178005.1,ENSMUSG00000096559.1	Gm23567	ENSMUSG00000096559.1	ENSMUST00000178005.1	snRNA	chr9:72969602-72969708
chr9	72973480	72973626	+	B3A	SINE	B2	chr9	72973557	72973559	-	ENSMUST00000193501.1,ENSMUSG00000102797.1	Gm37710	ENSMUSG00000102797.1	ENSMUST00000193501.1	TEC	chr9:72972285-72973558
chr9	73019094	73019204	+	B1_Mus1	SINE	Alu	chr9	73019203	73019205	-	ENSMUST00000184776.1,ENSMUSG00000079469.10	Pigb	ENSMUSG00000079469.10	ENSMUST00000184776.1	protein_coding	chr9:73017611-73019204
chr9	73024167	73024315	-	B1_Mur2	SINE	Alu	chr9	73024292	73024294	+	ENSMUST00000194364.1,ENSMUSG00000102305.1	Gm38192	ENSMUSG00000102305.1	ENSMUST00000194364.1	TEC	chr9:73024293-73026139
chr9	73024172	73024354	-	ID_B1	SINE	B4	chr9	73024292	73024294	+	ENSMUST00000194364.1,ENSMUSG00000102305.1	Gm38192	ENSMUSG00000102305.1	ENSMUST00000194364.1	TEC	chr9:73024293-73026139
chr9	73034753	73034796	+	(TCCC)n	Simple_repeat	Simple_repeat	chr9	73034756	73034758	-	ENSMUST00000185027.1,ENSMUSG00000079469.10	Pigb	ENSMUSG00000079469.10	ENSMUST00000185027.1	protein_coding	chr9:73032970-73034757
chr9	73040359	73040500	+	B3	SINE	B2	chr9	73040377	73040379	-	ENSMUST00000183746.7,ENSMUSG00000079469.10	Pigb	ENSMUSG00000079469.10	ENSMUST00000183746.7	protein_coding	chr9:73007419-73040378
chr9	73094772	73095022	+	MLT1L	LTR	ERVL-MaLR	chr9	73094832	73094834	+	ENSMUST00000184032.1,ENSMUSG00000032202.11	Rab27a	ENSMUSG00000032202.11	ENSMUST00000184032.1	protein_coding	chr9:73094833-73096415
chr9	73101754	73101881	-	B1_Mus1	SINE	Alu	chr9	73101835	73101837	+	ENSMUST00000172578.1,ENSMUSG00000092622.8	Khdc3	ENSMUSG00000092622.8	ENSMUST00000172578.1	protein_coding	chr9:73101836-73102887
chr9	74059338	74059459	+	5S	rRNA	rRNA	chr9	74059338	74059340	+	ENSMUST00000083215.2,ENSMUSG00000095631.1	n-R5s86	ENSMUSG00000095631.1	ENSMUST00000083215.2	rRNA	chr9:74059339-74059457
chr9	74362609	74362687	+	U4	snRNA	snRNA	chr9	74362609	74362611	+	ENSMUST00000122776.2,ENSMUSG00000084725.2	Gm24141	ENSMUSG00000084725.2	ENSMUST00000122776.2	snRNA	chr9:74362610-74362724
chr9	74365056	74365192	-	MTEa	LTR	ERVL-MaLR	chr9	74365062	74365064	-	ENSMUST00000183844.1,ENSMUSG00000098313.1	Nr1h2-ps	ENSMUSG00000098313.1	ENSMUST00000183844.1	processed_pseudogene	chr9:74364586-74365063
chr9	74781993	74782072	+	(TG)n	Simple_repeat	Simple_repeat	chr9	74782069	74782071	+	ENSMUST00000158010.1,ENSMUSG00000088635.1	Gm22315	ENSMUSG00000088635.1	ENSMUST00000158010.1	snoRNA	chr9:74782070-74782212
chr9	74847967	74848021	+	(GA)n	Simple_repeat	Simple_repeat	chr9	74847982	74847984	+	ENSMUST00000160979.8,ENSMUSG00000066477.13	Gm16551	ENSMUSG00000066477.13	ENSMUST00000160979.8	processed_transcript	chr9:74847983-74852873
chr9	75071166	75071190	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	75071187	75071189	+	ENSMUST00000123128.7,ENSMUSG00000034593.16	Myo5a	ENSMUSG00000034593.16	ENSMUST00000123128.7	protein_coding	chr9:75071188-75223688
chr9	75299965	75300069	-	B3A	SINE	B2	chr9	75299988	75299990	+	ENSMUST00000216529.1,ENSMUSG00000033590.8	Myo5c	ENSMUSG00000033590.8	ENSMUST00000216529.1	protein_coding	chr9:75299989-75305060
chr9	75342670	75343072	-	MTC	LTR	ERVL-MaLR	chr9	75342984	75342986	+	ENSMUST00000215891.1,ENSMUSG00000032192.9	Gnb5	ENSMUSG00000032192.9	ENSMUST00000215891.1	protein_coding	chr9:75342985-75345075
chr9	75342670	75343072	-	MTC	LTR	ERVL-MaLR	chr9	75342841	75342843	-	ENSMUST00000213336.1,ENSMUSG00000110824.1	Gm48677	ENSMUSG00000110824.1	ENSMUST00000213336.1	antisense	chr9:75317072-75342842
chr9	75471945	75472131	+	B3A	SINE	B2	chr9	75472127	75472129	+	ENSMUST00000208434.1,ENSMUSG00000109032.1	Gm7972	ENSMUSG00000109032.1	ENSMUST00000208434.1	transcribed_unprocessed_pseudogene	chr9:75472128-75484702
chr9	75520312	75520505	-	B2_Mm1t	SINE	B2	chr9	75520501	75520503	-	ENSMUST00000215151.1,ENSMUSG00000111228.1	Gm48789	ENSMUSG00000111228.1	ENSMUST00000215151.1	processed_pseudogene	chr9:75520374-75520502
chr9	75611147	75611189	+	GC_rich	Low_complexity	Low_complexity	chr9	75611169	75611171	-	ENSMUST00000215614.1,ENSMUSG00000032186.15	Tmod2	ENSMUSG00000032186.15	ENSMUST00000215614.1	protein_coding	chr9:75573589-75611170
chr9	75876156	75876323	+	(TTTTC)n	Simple_repeat	Simple_repeat	chr9	75876259	75876261	+	ENSMUST00000215680.1,ENSMUSG00000110817.1	Gm47723	ENSMUSG00000110817.1	ENSMUST00000215680.1	TEC	chr9:75876260-75877713
chr9	75911407	75911541	+	(CAG)n	Simple_repeat	Simple_repeat	chr9	75911421	75911423	+	ENSMUST00000200417.1,ENSMUSG00000105435.1	Gm44355	ENSMUSG00000105435.1	ENSMUST00000200417.1	miRNA	chr9:75911422-75911525
chr9	75970951	75971027	-	U4	snRNA	snRNA	chr9	75971026	75971028	-	ENSMUST00000175284.1,ENSMUSG00000093025.1	Gm25300	ENSMUSG00000093025.1	ENSMUST00000175284.1	snRNA	chr9:75970944-75971027
chr9	76754317	76755069	+	RMER19B2	LTR	ERVK	chr9	76754766	76754768	+	ENSMUST00000216390.1,ENSMUSG00000111222.1	Gm34158	ENSMUSG00000111222.1	ENSMUST00000216390.1	lincRNA	chr9:76754767-76786516
chr9	76822970	76823164	-	Lx8b	LINE	L1	chr9	76823061	76823063	-	ENSMUST00000214015.1,ENSMUSG00000110839.1	Gm47800	ENSMUSG00000110839.1	ENSMUST00000214015.1	lincRNA	chr9:76804116-76823062
chr9	77347766	77347813	+	GA-rich	Low_complexity	Low_complexity	chr9	77347792	77347794	-	ENSMUST00000184848.7,ENSMUSG00000032355.16	Mlip	ENSMUSG00000032355.16	ENSMUST00000184848.7	protein_coding	chr9:77102086-77347793
chr9	77347766	77347813	+	GA-rich	Low_complexity	Low_complexity	chr9	77347800	77347802	-	ENSMUST00000184415.7,ENSMUSG00000032355.16	Mlip	ENSMUSG00000032355.16	ENSMUST00000184415.7	protein_coding	chr9:77102086-77347801
chr9	77357268	77357438	+	ORR1B1	LTR	ERVL-MaLR	chr9	77357351	77357353	+	ENSMUST00000193999.1,ENSMUSG00000103794.1	4930590H14Rik	ENSMUSG00000103794.1	ENSMUST00000193999.1	TEC	chr9:77357352-77357902
chr9	77577699	77577748	+	(TG)n	Simple_repeat	Simple_repeat	chr9	77577713	77577715	+	ENSMUST00000175470.1,ENSMUSG00000093211.1	Gm25250	ENSMUSG00000093211.1	ENSMUST00000175470.1	miRNA	chr9:77577714-77577789
chr9	77729807	77730302	+	RLTR18B	LTR	ERVK	chr9	77730278	77730280	-	ENSMUST00000215521.1,ENSMUSG00000111225.1	Gm47790	ENSMUSG00000111225.1	ENSMUST00000215521.1	lincRNA	chr9:77692197-77730279
chr9	78027799	78027950	+	ORR1A2	LTR	ERVL-MaLR	chr9	78027944	78027946	+	ENSMUST00000216404.1,ENSMUSG00000111850.1	Gm47829	ENSMUSG00000111850.1	ENSMUST00000216404.1	processed_pseudogene	chr9:78027945-78028089
chr9	78175301	78175633	-	7SK	RNA	RNA	chr9	78175632	78175634	-	ENSMUST00000083103.1,ENSMUSG00000065037.1	Rn7sk	ENSMUSG00000065037.1	ENSMUST00000083103.1	misc_RNA	chr9:78175303-78175633
chr9	78182722	78182813	+	PB1D9	SINE	Alu	chr9	78182773	78182775	+	ENSMUST00000213215.1,ENSMUSG00000032348.6	Gsta4	ENSMUSG00000032348.6	ENSMUST00000213215.1	protein_coding	chr9:78182774-78205955
chr9	78464683	78464736	-	B1_Mur2	SINE	Alu	chr9	78464698	78464700	+	ENSMUST00000157051.1,ENSMUSG00000032342.13	Mto1	ENSMUSG00000032342.13	ENSMUST00000157051.1	protein_coding	chr9:78464699-78470741
chr9	78464684	78464748	-	ID_B1	SINE	B4	chr9	78464698	78464700	+	ENSMUST00000157051.1,ENSMUSG00000032342.13	Mto1	ENSMUSG00000032342.13	ENSMUST00000157051.1	protein_coding	chr9:78464699-78470741
chr9	79342934	79343007	+	(TC)n	Simple_repeat	Simple_repeat	chr9	79342939	79342941	-	ENSMUST00000214232.1,ENSMUSG00000110856.1	Gm49264	ENSMUSG00000110856.1	ENSMUST00000214232.1	processed_pseudogene	chr9:79342236-79342940
chr9	79519167	79519440	+	G-rich	Low_complexity	Low_complexity	chr9	79519301	79519303	-	ENSMUST00000217201.1,ENSMUSG00000111765.1	Gm10635	ENSMUSG00000111765.1	ENSMUST00000217201.1	lincRNA	chr9:79444037-79519302
chr9	79688492	79688971	+	Lx8	LINE	L1	chr9	79688775	79688777	+	ENSMUST00000123894.1,ENSMUSG00000086608.1	4930562D21Rik	ENSMUSG00000086608.1	ENSMUST00000123894.1	antisense	chr9:79688776-79690907
chr9	79793410	79793487	+	G-rich	Low_complexity	Low_complexity	chr9	79793429	79793431	-	ENSMUST00000034878.11,ENSMUSG00000032328.12	Tmem30a	ENSMUSG00000032328.12	ENSMUST00000034878.11	protein_coding	chr9:79768943-79793430
chr9	79793410	79793487	+	G-rich	Low_complexity	Low_complexity	chr9	79793429	79793431	-	ENSMUST00000153815.7,ENSMUSG00000032328.12	Tmem30a	ENSMUSG00000032328.12	ENSMUST00000153815.7	protein_coding	chr9:79772552-79793430
chr9	79793410	79793487	+	G-rich	Low_complexity	Low_complexity	chr9	79793429	79793431	-	ENSMUST00000130419.1,ENSMUSG00000032328.12	Tmem30a	ENSMUSG00000032328.12	ENSMUST00000130419.1	protein_coding	chr9:79776854-79793430
chr9	79838380	79841575	-	L1Md_F2	LINE	L1	chr9	79838386	79838388	-	ENSMUST00000174028.1,ENSMUSG00000092565.1	Gm20477	ENSMUSG00000092565.1	ENSMUST00000174028.1	processed_pseudogene	chr9:79838108-79838387
chr9	80037428	80037633	+	7SK	RNA	RNA	chr9	80037428	80037430	+	ENSMUST00000158283.1,ENSMUSG00000088908.1	Gm25433	ENSMUSG00000088908.1	ENSMUST00000158283.1	misc_RNA	chr9:80037429-80037714
chr9	80066860	80066949	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	80066902	80066904	+	ENSMUST00000175673.1,ENSMUSG00000034252.14	Senp6	ENSMUSG00000034252.14	ENSMUST00000175673.1	protein_coding	chr9:80066903-80094484
chr9	80066860	80066949	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	80066902	80066904	+	ENSMUST00000037484.14,ENSMUSG00000034252.14	Senp6	ENSMUSG00000034252.14	ENSMUST00000037484.14	protein_coding	chr9:80066903-80144953
chr9	80066860	80066949	+	(CGG)n	Simple_repeat	Simple_repeat	chr9	80066935	80066937	+	ENSMUST00000176640.7,ENSMUSG00000034252.14	Senp6	ENSMUSG00000034252.14	ENSMUST00000176640.7	protein_coding	chr9:80066936-80113753
chr9	80261863	80262052	+	B2_Mm2	SINE	B2	chr9	80262046	80262048	+	ENSMUST00000130496.1,ENSMUSG00000033577.18	Myo6	ENSMUSG00000033577.18	ENSMUST00000130496.1	protein_coding	chr9:80262047-80266671
chr9	80285257	80285462	+	URR1B	DNA	hAT-Charlie	chr9	80285413	80285415	+	ENSMUST00000156199.1,ENSMUSG00000033577.18	Myo6	ENSMUSG00000033577.18	ENSMUST00000156199.1	protein_coding	chr9:80285414-80286508
chr9	80709896	80710061	-	MIRb	SINE	MIR	chr9	80709994	80709996	+	ENSMUST00000214710.1,ENSMUSG00000111717.1	Gm39380	ENSMUSG00000111717.1	ENSMUST00000214710.1	lincRNA	chr9:80709995-80713723
chr9	80802318	80802746	+	RLTR10C	LTR	ERVK	chr9	80802650	80802652	+	ENSMUST00000184749.1,ENSMUSG00000098685.1	Gm27224	ENSMUSG00000098685.1	ENSMUST00000184749.1	lincRNA	chr9:80802651-80864861
chr9	80949981	80958543	-	L1Md_T	LINE	L1	chr9	80955435	80955437	+	ENSMUST00000181827.3,ENSMUSG00000097655.3	Gm26713	ENSMUSG00000097655.3	ENSMUST00000181827.3	lincRNA	chr9:80955436-81203591
chr9	81858838	81859183	-	RLTR9A3	LTR	ERVK	chr9	81858890	81858892	-	ENSMUST00000181794.2,ENSMUSG00000097241.2	Gm26907	ENSMUSG00000097241.2	ENSMUST00000181794.2	antisense	chr9:81776695-81858891
chr9	82439263	82440201	-	RLTR25B	LTR	ERVK	chr9	82439473	82439475	-	ENSMUST00000158441.1,ENSMUSG00000089066.1	Gm22836	ENSMUSG00000089066.1	ENSMUST00000158441.1	snRNA	chr9:82439414-82439474
chr9	82463355	82463452	-	U6	snRNA	snRNA	chr9	82463451	82463453	-	ENSMUST00000158135.1,ENSMUSG00000088760.1	Gm24393	ENSMUSG00000088760.1	ENSMUST00000158135.1	snRNA	chr9:82463356-82463452
chr9	82908940	82908965	+	AT_rich	Low_complexity	Low_complexity	chr9	82908964	82908966	-	ENSMUST00000188850.1,ENSMUSG00000032253.13	Phip	ENSMUSG00000032253.13	ENSMUST00000188850.1	protein_coding	chr9:82903443-82908965
chr9	82917386	82917919	+	ORR1D1-int	LTR	ERVL-MaLR	chr9	82917608	82917610	-	ENSMUST00000186099.1,ENSMUSG00000032253.13	Phip	ENSMUSG00000032253.13	ENSMUST00000186099.1	protein_coding	chr9:82915816-82917609
chr9	83008424	83009021	+	RMER15	LTR	ERVL	chr9	83008602	83008604	+	ENSMUST00000216894.1,ENSMUSG00000111839.1	Gm39383	ENSMUSG00000111839.1	ENSMUST00000216894.1	lincRNA	chr9:83008603-83042603
chr9	83173527	83176464	-	IAPEz-int	LTR	ERVK	chr9	83175776	83175778	-	ENSMUST00000194067.1,ENSMUSG00000104080.1	Gm38279	ENSMUSG00000104080.1	ENSMUST00000194067.1	TEC	chr9:83174647-83175777
chr9	83431535	83431708	+	B4A	SINE	B4	chr9	83431546	83431548	+	ENSMUST00000188217.1,ENSMUSG00000099718.1	Gm2087	ENSMUSG00000099718.1	ENSMUST00000188217.1	antisense	chr9:83431547-83454573
chr9	83573238	83573326	-	B1F	SINE	Alu	chr9	83573288	83573290	-	ENSMUST00000213703.1,ENSMUSG00000110950.1	Gm39384	ENSMUSG00000110950.1	ENSMUST00000213703.1	lincRNA	chr9:83571560-83573289
chr9	83938368	83938475	-	U6	snRNA	snRNA	chr9	83938474	83938476	-	ENSMUST00000188029.1,ENSMUSG00000101392.1	Gm29163	ENSMUSG00000101392.1	ENSMUST00000188029.1	snRNA	chr9:83938369-83938475
chr9	83942963	83949452	+	IAPEz-int	LTR	ERVK	chr9	83948780	83948782	+	ENSMUST00000190166.6,ENSMUSG00000032263.14	Bckdhb	ENSMUSG00000032263.14	ENSMUST00000190166.6	protein_coding	chr9:83948781-84124240
chr9	84188354	84188527	+	U1	snRNA	snRNA	chr9	84188354	84188356	+	ENSMUST00000104478.1,ENSMUSG00000077666.1	Gm26146	ENSMUSG00000077666.1	ENSMUST00000104478.1	snRNA	chr9:84188355-84188539
chr9	84386554	84388326	+	Lx9	LINE	L1	chr9	84386554	84386556	-	ENSMUST00000215826.1,ENSMUSG00000111616.1	Gm18487	ENSMUSG00000111616.1	ENSMUST00000215826.1	processed_pseudogene	chr9:84385307-84386555
chr9	84846038	84852330	-	L1Md_F2	LINE	L1	chr9	84851282	84851284	+	ENSMUST00000216019.1,ENSMUSG00000099724.2	4930554C24Rik	ENSMUSG00000099724.2	ENSMUST00000216019.1	lincRNA	chr9:84851283-84857560
chr9	84858692	84858873	-	B3	SINE	B2	chr9	84858706	84858708	+	ENSMUST00000213542.1,ENSMUSG00000111500.1	Gm48820	ENSMUSG00000111500.1	ENSMUST00000213542.1	lincRNA	chr9:84858707-84862914
chr9	84890544	84890861	+	RLTRETN_Mm	LTR	ERVK	chr9	84890544	84890546	+	ENSMUST00000188309.1,ENSMUSG00000102064.1	Gm28625	ENSMUSG00000102064.1	ENSMUST00000188309.1	lincRNA	chr9:84890545-84890749
chr9	85234311	85234668	-	Lx6	LINE	L1	chr9	85234581	85234583	-	ENSMUST00000216158.1,ENSMUSG00000111281.1	Gm48830	ENSMUSG00000111281.1	ENSMUST00000216158.1	lincRNA	chr9:85221196-85234582
chr9	85239864	85240332	+	LTR67B	LTR	ERVL	chr9	85240040	85240042	-	ENSMUST00000213613.1,ENSMUSG00000111822.1	Gm48831	ENSMUSG00000111822.1	ENSMUST00000213613.1	lincRNA	chr9:85238908-85240041
chr9	85312713	85312878	+	T-rich	Low_complexity	Low_complexity	chr9	85312772	85312774	+	ENSMUST00000113205.1,ENSMUSG00000079433.1	Gm11114	ENSMUSG00000079433.1	ENSMUST00000113205.1	protein_coding	chr9:85312773-85312860
chr9	85344270	85344371	-	Lx2	LINE	L1	chr9	85344350	85344352	-	ENSMUST00000192504.1,ENSMUSG00000103368.1	Gm36927	ENSMUSG00000103368.1	ENSMUST00000192504.1	TEC	chr9:85342511-85344351
chr9	85347852	85349331	-	RMER15-int	LTR	ERVL	chr9	85348064	85348066	-	ENSMUST00000214276.1,ENSMUSG00000111840.1	Gm48832	ENSMUSG00000111840.1	ENSMUST00000214276.1	lincRNA	chr9:85332352-85348065
chr9	85347852	85349331	-	RMER15-int	LTR	ERVL	chr9	85348063	85348065	-	ENSMUST00000214073.1,ENSMUSG00000111840.1	Gm48832	ENSMUSG00000111840.1	ENSMUST00000214073.1	lincRNA	chr9:85332440-85348064
chr9	85553171	85553995	+	L1Md_F	LINE	L1	chr9	85553764	85553766	-	ENSMUST00000216435.1,ENSMUSG00000110956.1	Gm48834	ENSMUSG00000110956.1	ENSMUST00000216435.1	lincRNA	chr9:85519493-85553765
chr9	85639564	85639915	-	ORR1D1	LTR	ERVL-MaLR	chr9	85639566	85639568	-	ENSMUST00000213802.1,ENSMUSG00000111386.1	Gm48842	ENSMUSG00000111386.1	ENSMUST00000213802.1	lincRNA	chr9:85637289-85639567
chr9	85772449	85772541	-	RMER17C2	LTR	ERVK	chr9	85772479	85772481	-	ENSMUST00000083772.1,ENSMUSG00000065706.1	Gm22830	ENSMUSG00000065706.1	ENSMUST00000083772.1	snoRNA	chr9:85772351-85772480
chr9	85943146	85943509	-	RLTR10D2	LTR	ERVK	chr9	85943199	85943201	-	ENSMUST00000213921.1,ENSMUSG00000110946.1	Gm47604	ENSMUSG00000110946.1	ENSMUST00000213921.1	lincRNA	chr9:85941038-85943200
chr9	86496915	86497209	-	Charlie1a	DNA	hAT-Charlie	chr9	86497029	86497031	+	ENSMUST00000190834.1,ENSMUSG00000034973.16	Dop1a	ENSMUSG00000034973.16	ENSMUST00000190834.1	protein_coding	chr9:86497030-86501000
chr9	86503935	86504020	+	L2	LINE	L2	chr9	86503935	86503937	+	ENSMUST00000186418.1,ENSMUSG00000034973.16	Dop1a	ENSMUSG00000034973.16	ENSMUST00000186418.1	protein_coding	chr9:86503936-86516390
chr9	86523402	86523505	-	L1ME1	LINE	L1	chr9	86523491	86523493	+	ENSMUST00000187348.6,ENSMUSG00000034973.16	Dop1a	ENSMUSG00000034973.16	ENSMUST00000187348.6	protein_coding	chr9:86523492-86546490
chr9	86547085	86547175	-	RLTR42-int	LTR	ERVK	chr9	86547152	86547154	-	ENSMUST00000194336.1,ENSMUSG00000103731.1	Gm17530	ENSMUSG00000103731.1	ENSMUST00000194336.1	TEC	chr9:86546682-86547153
chr9	86549460	86549618	+	B3	SINE	B2	chr9	86549616	86549618	+	ENSMUST00000187427.1,ENSMUSG00000034973.16	Dop1a	ENSMUSG00000034973.16	ENSMUST00000187427.1	protein_coding	chr9:86549617-86554630
chr9	86557934	86558019	+	MIRc	SINE	MIR	chr9	86557939	86557941	-	ENSMUST00000190924.1,ENSMUSG00000056131.13	Pgm3	ENSMUSG00000056131.13	ENSMUST00000190924.1	protein_coding	chr9:86555256-86557940
chr9	86685056	86685345	-	B4A	SINE	B4	chr9	86685207	86685209	-	ENSMUST00000193572.1,ENSMUSG00000102259.1	Gm38230	ENSMUSG00000102259.1	ENSMUST00000193572.1	TEC	chr9:86684050-86685208
chr9	86687127	86687453	-	MTD	LTR	ERVL-MaLR	chr9	86687276	86687278	-	ENSMUST00000185374.1,ENSMUSG00000032418.15	Me1	ENSMUSG00000032418.15	ENSMUST00000185374.1	protein_coding	chr9:86581406-86687277
chr9	86711905	86712073	+	URR1B	DNA	hAT-Charlie	chr9	86712003	86712005	+	ENSMUST00000195378.1,ENSMUSG00000104120.1	Gm37484	ENSMUSG00000104120.1	ENSMUST00000195378.1	TEC	chr9:86712004-86714526
chr9	86829106	86829555	+	LTR67B	LTR	ERVL	chr9	86829322	86829324	-	ENSMUST00000189762.1,ENSMUSG00000033419.15	Snap91	ENSMUSG00000033419.15	ENSMUST00000189762.1	protein_coding	chr9:86806485-86829323
chr9	86880353	86880477	+	C-rich	Low_complexity	Low_complexity	chr9	86880438	86880440	-	ENSMUST00000098495.9,ENSMUSG00000033419.15	Snap91	ENSMUSG00000033419.15	ENSMUST00000098495.9	protein_coding	chr9:86765923-86880439
chr9	86880353	86880477	+	C-rich	Low_complexity	Low_complexity	chr9	86880448	86880450	-	ENSMUST00000036347.12,ENSMUSG00000033419.15	Snap91	ENSMUSG00000033419.15	ENSMUST00000036347.12	protein_coding	chr9:86765936-86880449
chr9	86880353	86880477	+	C-rich	Low_complexity	Low_complexity	chr9	86880448	86880450	-	ENSMUST00000074468.12,ENSMUSG00000033419.15	Snap91	ENSMUSG00000033419.15	ENSMUST00000074468.12	protein_coding	chr9:86765936-86880449
chr9	86880353	86880477	+	C-rich	Low_complexity	Low_complexity	chr9	86880413	86880415	-	ENSMUST00000074501.11,ENSMUSG00000033419.15	Snap91	ENSMUSG00000033419.15	ENSMUST00000074501.11	protein_coding	chr9:86766678-86880414
chr9	86880353	86880477	+	C-rich	Low_complexity	Low_complexity	chr9	86880396	86880398	-	ENSMUST00000191290.2,ENSMUSG00000033419.15	Snap91	ENSMUSG00000033419.15	ENSMUST00000191290.2	protein_coding	chr9:86835109-86880397
chr9	87006030	87006313	+	Charlie1	DNA	hAT-Charlie	chr9	87006162	87006164	-	ENSMUST00000217543.1,ENSMUSG00000111874.1	Gm36539	ENSMUSG00000111874.1	ENSMUST00000217543.1	lincRNA	chr9:86981991-87006163
chr9	87491986	87498347	+	IAPEz-int	LTR	ERVK	chr9	87498111	87498113	+	ENSMUST00000193859.1,ENSMUSG00000102683.1	Gm37375	ENSMUSG00000102683.1	ENSMUST00000193859.1	TEC	chr9:87498112-87498498
chr9	88258256	88259908	-	L1VL2	LINE	L1	chr9	88259894	88259896	+	ENSMUST00000190118.1,ENSMUSG00000100782.1	Gm28231	ENSMUSG00000100782.1	ENSMUST00000190118.1	lincRNA	chr9:88259895-88263035
chr9	88526723	88526794	-	U4	snRNA	snRNA	chr9	88526793	88526795	-	ENSMUST00000122754.1,ENSMUSG00000084703.1	Gm22985	ENSMUSG00000084703.1	ENSMUST00000122754.1	snRNA	chr9:88526679-88526794
chr9	88553235	88553438	+	7SLRNA	srpRNA	srpRNA	chr9	88553235	88553237	+	ENSMUST00000175064.2,ENSMUSG00000092805.2	Gm26461	ENSMUSG00000092805.2	ENSMUST00000175064.2	misc_RNA	chr9:88553236-88553525
chr9	88821719	88828121	+	IAPEz-int	LTR	ERVK	chr9	88826812	88826814	-	ENSMUST00000195645.1,ENSMUSG00000103837.1	Gm37614	ENSMUSG00000103837.1	ENSMUST00000195645.1	TEC	chr9:88826604-88826813
chr9	88821719	88828121	+	IAPEz-int	LTR	ERVK	chr9	88827521	88827523	+	ENSMUST00000190113.1,ENSMUSG00000101698.1	Gm29562	ENSMUSG00000101698.1	ENSMUST00000190113.1	lincRNA	chr9:88827522-88828425
chr9	88984836	88985524	-	Charlie7	DNA	hAT-Charlie	chr9	88985190	88985192	+	ENSMUST00000195301.1,ENSMUSG00000103336.1	Gm37993	ENSMUSG00000103336.1	ENSMUST00000195301.1	TEC	chr9:88985191-88986178
chr9	89263289	89263464	+	(TCTA)n	Simple_repeat	Simple_repeat	chr9	89263394	89263396	-	ENSMUST00000192418.1,ENSMUSG00000103247.1	Gm38091	ENSMUSG00000103247.1	ENSMUST00000192418.1	TEC	chr9:89259525-89263395
chr9	90062423	90062570	-	B1_Mm	SINE	Alu	chr9	90062521	90062523	+	ENSMUST00000142750.1,ENSMUSG00000032359.14	Ctsh	ENSMUSG00000032359.14	ENSMUST00000142750.1	protein_coding	chr9:90062522-90071885
chr9	90159756	90160200	+	RLTR11C_MM	LTR	ERVK	chr9	90159803	90159805	-	ENSMUST00000192703.1,ENSMUSG00000104263.1	9430062P05Rik	ENSMUSG00000104263.1	ENSMUST00000192703.1	TEC	chr9:90156460-90159804
chr9	90270611	90270784	+	C-rich	Low_complexity	Low_complexity	chr9	90270768	90270770	-	ENSMUST00000041767.13,ENSMUSG00000037410.13	Tbc1d2b	ENSMUSG00000037410.13	ENSMUST00000041767.13	protein_coding	chr9:90202027-90270769
chr9	90270611	90270784	+	C-rich	Low_complexity	Low_complexity	chr9	90270770	90270772	-	ENSMUST00000128874.2,ENSMUSG00000037410.13	Tbc1d2b	ENSMUSG00000037410.13	ENSMUST00000128874.2	protein_coding	chr9:90238280-90270771
chr9	90270727	90270856	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr9	90270768	90270770	-	ENSMUST00000041767.13,ENSMUSG00000037410.13	Tbc1d2b	ENSMUSG00000037410.13	ENSMUST00000041767.13	protein_coding	chr9:90202027-90270769
chr9	90270727	90270856	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr9	90270803	90270805	-	ENSMUST00000144348.7,ENSMUSG00000037410.13	Tbc1d2b	ENSMUSG00000037410.13	ENSMUST00000144348.7	protein_coding	chr9:90229053-90270804
chr9	90270727	90270856	+	(CCGCG)n	Simple_repeat	Simple_repeat	chr9	90270770	90270772	-	ENSMUST00000128874.2,ENSMUSG00000037410.13	Tbc1d2b	ENSMUSG00000037410.13	ENSMUST00000128874.2	protein_coding	chr9:90238280-90270771
chr9	90351995	90352137	+	U1	snRNA	snRNA	chr9	90351994	90351996	+	ENSMUST00000083947.1,ENSMUSG00000065881.1	Gm22866	ENSMUSG00000065881.1	ENSMUST00000083947.1	snRNA	chr9:90351995-90352171
chr9	90857702	90864094	-	IAPEz-int	LTR	ERVK	chr9	90863158	90863160	+	ENSMUST00000192353.1,ENSMUSG00000103547.1	Gm37665	ENSMUSG00000103547.1	ENSMUST00000192353.1	TEC	chr9:90863159-90863307
chr9	90932070	90939701	-	RLTR6-int	LTR	ERV1	chr9	90938979	90938981	+	ENSMUST00000187536.1,ENSMUSG00000099406.1	Gm29408	ENSMUSG00000099406.1	ENSMUST00000187536.1	lincRNA	chr9:90938980-90939195
chr9	91327782	91327979	+	B3	SINE	B2	chr9	91327847	91327849	-	ENSMUST00000193639.1,ENSMUSG00000104286.1	Gm37457	ENSMUSG00000104286.1	ENSMUST00000193639.1	TEC	chr9:91325416-91327848
chr9	91336875	91337598	-	RMER19B2	LTR	ERVK	chr9	91337066	91337068	-	ENSMUST00000191740.1,ENSMUSG00000102568.1	Gm37040	ENSMUSG00000102568.1	ENSMUST00000191740.1	TEC	chr9:91335244-91337067
chr9	91378116	91378199	+	(TC)n	Simple_repeat	Simple_repeat	chr9	91378196	91378198	+	ENSMUST00000172858.1,ENSMUSG00000036972.14	Zic4	ENSMUSG00000036972.14	ENSMUST00000172858.1	protein_coding	chr9:91378197-91384398
chr9	91758091	91759956	-	MERVL_2A-int	LTR	ERVL	chr9	91758145	91758147	-	ENSMUST00000194999.1,ENSMUSG00000104216.1	Gm37987	ENSMUSG00000104216.1	ENSMUST00000194999.1	TEC	chr9:91757322-91758146
chr9	91839769	91839872	+	U6	snRNA	snRNA	chr9	91839769	91839771	+	ENSMUST00000157246.1,ENSMUSG00000087871.1	Gm26101	ENSMUSG00000087871.1	ENSMUST00000157246.1	snRNA	chr9:91839770-91839874
chr9	92895793	92895938	-	Lx4A	LINE	L1	chr9	92895831	92895833	+	ENSMUST00000187280.1,ENSMUSG00000099823.1	Gm28054	ENSMUSG00000099823.1	ENSMUST00000187280.1	lincRNA	chr9:92895832-92915791
chr9	92990155	92990741	-	RMER1B	Other	Other	chr9	92990732	92990734	-	ENSMUST00000185830.6,ENSMUSG00000100294.6	1700034K08Rik	ENSMUSG00000100294.6	ENSMUST00000185830.6	lincRNA	chr9:92979914-92990733
chr9	93005736	93005997	+	RLTR51B_Mm	LTR	ERVK?	chr9	93005738	93005740	-	ENSMUST00000190562.6,ENSMUSG00000100294.6	1700034K08Rik	ENSMUSG00000100294.6	ENSMUST00000190562.6	lincRNA	chr9:92979995-93005739
chr9	94284495	94284658	+	U1	snRNA	snRNA	chr9	94284495	94284497	+	ENSMUST00000082955.1,ENSMUSG00000064889.1	Gm24200	ENSMUSG00000064889.1	ENSMUST00000082955.1	snRNA	chr9:94284496-94284652
chr9	94644009	94644103	+	U6	snRNA	snRNA	chr9	94644018	94644020	+	ENSMUST00000158926.1,ENSMUSG00000089551.1	Gm24178	ENSMUSG00000089551.1	ENSMUST00000158926.1	snRNA	chr9:94644019-94644114
chr9	95121432	95122314	+	Arthur1B	DNA	hAT-Tip100	chr9	95121685	95121687	+	ENSMUST00000162329.1,ENSMUSG00000031129.9	Slc9a9	ENSMUSG00000031129.9	ENSMUST00000162329.1	protein_coding	chr9:95121686-95124551
chr9	95559651	95559720	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	95559656	95559658	+	ENSMUST00000079597.6,ENSMUSG00000064225.6	Paqr9	ENSMUSG00000064225.6	ENSMUST00000079597.6	protein_coding	chr9:95559657-95568023
chr9	95718494	95718665	+	L2	LINE	L2	chr9	95718613	95718615	-	ENSMUST00000188141.1,ENSMUSG00000032839.13	Trpc1	ENSMUSG00000032839.13	ENSMUST00000188141.1	protein_coding	chr9:95715507-95718614
chr9	95858273	95858379	+	PB1D9	SINE	Alu	chr9	95858321	95858323	-	ENSMUST00000190890.1,ENSMUSG00000096655.2	1700065D16Rik	ENSMUSG00000096655.2	ENSMUST00000190890.1	antisense	chr9:95855420-95858322
chr9	95858273	95858379	+	PB1D9	SINE	Alu	chr9	95858319	95858321	-	ENSMUST00000178038.1,ENSMUSG00000096655.2	1700065D16Rik	ENSMUSG00000096655.2	ENSMUST00000178038.1	antisense	chr9:95855552-95858320
chr9	95888563	95888769	-	B4A	SINE	B4	chr9	95888744	95888746	+	ENSMUST00000186127.1,ENSMUSG00000032409.15	Atr	ENSMUSG00000032409.15	ENSMUST00000186127.1	protein_coding	chr9:95888745-95891072
chr9	95904449	95904593	-	RSINE1	SINE	B4	chr9	95904520	95904522	+	ENSMUST00000190644.1,ENSMUSG00000032409.15	Atr	ENSMUSG00000032409.15	ENSMUST00000190644.1	protein_coding	chr9:95904521-95906352
chr9	95937138	95937228	+	AT_rich	Low_complexity	Low_complexity	chr9	95937169	95937171	+	ENSMUST00000186524.1,ENSMUSG00000032409.15	Atr	ENSMUSG00000032409.15	ENSMUST00000186524.1	protein_coding	chr9:95937170-95940994
chr9	95959375	95959423	+	(TC)n	Simple_repeat	Simple_repeat	chr9	95959392	95959394	-	ENSMUST00000180727.7,ENSMUSG00000097777.7	Gm16794	ENSMUSG00000097777.7	ENSMUST00000180727.7	antisense	chr9:95942045-95959393
chr9	95971715	95971921	-	B3	SINE	B2	chr9	95971744	95971746	+	ENSMUST00000185759.1,ENSMUSG00000032410.13	Xrn1	ENSMUSG00000032410.13	ENSMUST00000185759.1	protein_coding	chr9:95971745-95975359
chr9	96017438	96017531	+	RSINE1	SINE	B4	chr9	96017462	96017464	+	ENSMUST00000187359.1,ENSMUSG00000032410.13	Xrn1	ENSMUSG00000032410.13	ENSMUST00000187359.1	protein_coding	chr9:96017463-96020508
chr9	96024599	96025092	-	MT2_Mm	LTR	ERVL	chr9	96024739	96024741	-	ENSMUST00000186632.1,ENSMUSG00000101867.1	C78334	ENSMUSG00000101867.1	ENSMUST00000186632.1	antisense	chr9:96017942-96024740
chr9	96040554	96041439	-	RLTR13A3	LTR	ERVK	chr9	96040672	96040674	-	ENSMUST00000189281.1,ENSMUSG00000100931.1	Gm28085	ENSMUSG00000100931.1	ENSMUST00000189281.1	antisense	chr9:96027101-96040673
chr9	96119280	96119371	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	96119361	96119363	+	ENSMUST00000085217.11,ENSMUSG00000041440.18	Gk5	ENSMUSG00000041440.18	ENSMUST00000085217.11	protein_coding	chr9:96119362-96180190
chr9	96170880	96170985	-	PB1D7	SINE	Alu	chr9	96170915	96170917	+	ENSMUST00000189249.1,ENSMUSG00000041440.18	Gk5	ENSMUSG00000041440.18	ENSMUST00000189249.1	protein_coding	chr9:96170916-96173465
chr9	96305026	96305145	-	RCHARR1	DNA	hAT-Charlie	chr9	96305100	96305102	+	ENSMUST00000190689.1,ENSMUSG00000032411.15	Tfdp2	ENSMUSG00000032411.15	ENSMUST00000190689.1	protein_coding	chr9:96305101-96308248
chr9	96545087	96545273	-	B3A	SINE	B2	chr9	96545178	96545180	-	ENSMUST00000188853.1,ENSMUSG00000032413.12	Rasa2	ENSMUSG00000032413.12	ENSMUST00000188853.1	protein_coding	chr9:96542305-96545179
chr9	96631575	96631661	+	(CCTCG)n	Simple_repeat	Simple_repeat	chr9	96631616	96631618	-	ENSMUST00000034984.7,ENSMUSG00000032413.12	Rasa2	ENSMUSG00000032413.12	ENSMUST00000034984.7	protein_coding	chr9:96539300-96631617
chr9	96732639	96732670	+	AT_rich	Low_complexity	Low_complexity	chr9	96732668	96732670	-	ENSMUST00000124186.1,ENSMUSG00000040433.16	Zbtb38	ENSMUSG00000040433.16	ENSMUST00000124186.1	protein_coding	chr9:96731556-96732669
chr9	96765367	96765784	+	MTD	LTR	ERVL-MaLR	chr9	96765561	96765563	+	ENSMUST00000189815.6,ENSMUSG00000101581.6	C430002N11Rik	ENSMUSG00000101581.6	ENSMUST00000189815.6	processed_transcript	chr9:96765562-96773599
chr9	96765367	96765784	+	MTD	LTR	ERVL-MaLR	chr9	96765574	96765576	+	ENSMUST00000188819.6,ENSMUSG00000101581.6	C430002N11Rik	ENSMUSG00000101581.6	ENSMUST00000188819.6	processed_transcript	chr9:96765575-96774394
chr9	96765367	96765784	+	MTD	LTR	ERVL-MaLR	chr9	96765574	96765576	+	ENSMUST00000189067.6,ENSMUSG00000101581.6	C430002N11Rik	ENSMUSG00000101581.6	ENSMUST00000189067.6	processed_transcript	chr9:96765575-96782477
chr9	96765367	96765784	+	MTD	LTR	ERVL-MaLR	chr9	96765584	96765586	+	ENSMUST00000191375.6,ENSMUSG00000101581.6	C430002N11Rik	ENSMUSG00000101581.6	ENSMUST00000191375.6	processed_transcript	chr9:96765585-96773611
chr9	96765367	96765784	+	MTD	LTR	ERVL-MaLR	chr9	96765600	96765602	+	ENSMUST00000190054.1,ENSMUSG00000101581.6	C430002N11Rik	ENSMUSG00000101581.6	ENSMUST00000190054.1	processed_transcript	chr9:96765601-96773290
chr9	96862759	96862949	+	B3	SINE	B2	chr9	96862902	96862904	-	ENSMUST00000121077.7,ENSMUSG00000043587.15	Pxylp1	ENSMUSG00000043587.15	ENSMUST00000121077.7	protein_coding	chr9:96825587-96862903
chr9	97067223	97067401	-	B4A	SINE	B4	chr9	97067306	97067308	-	ENSMUST00000186238.1,ENSMUSG00000101365.1	Gm19325	ENSMUSG00000101365.1	ENSMUST00000186238.1	lincRNA	chr9:97047444-97067307
chr9	98003358	98003504	+	MER5B	DNA	hAT-Charlie	chr9	98003419	98003421	+	ENSMUST00000162370.7,ENSMUSG00000090255.7	4921534H16Rik	ENSMUSG00000090255.7	ENSMUST00000162370.7	antisense	chr9:98003420-98005769
chr9	98003358	98003504	+	MER5B	DNA	hAT-Charlie	chr9	98003419	98003421	+	ENSMUST00000162911.1,ENSMUSG00000090255.7	4921534H16Rik	ENSMUSG00000090255.7	ENSMUST00000162911.1	antisense	chr9:98003420-98012175
chr9	98032978	98033157	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	98032982	98032984	-	ENSMUST00000162295.1,ENSMUSG00000032452.12	Clstn2	ENSMUSG00000032452.12	ENSMUST00000162295.1	protein_coding	chr9:97453257-98032983
chr9	98287413	98287455	-	RLTR10B	LTR	ERVK	chr9	98287434	98287436	+	ENSMUST00000134253.7,ENSMUSG00000032456.13	Nmnat3	ENSMUSG00000032456.13	ENSMUST00000134253.7	protein_coding	chr9:98287435-98399516
chr9	98287413	98287455	-	RLTR10B	LTR	ERVK	chr9	98287454	98287456	+	ENSMUST00000129771.2,ENSMUSG00000032456.13	Nmnat3	ENSMUSG00000032456.13	ENSMUST00000129771.2	protein_coding	chr9:98287455-98368160
chr9	98576363	98576768	-	L1Md_F2	LINE	L1	chr9	98576765	98576767	-	ENSMUST00000214600.1,ENSMUSG00000111777.1	Gm47147	ENSMUSG00000111777.1	ENSMUST00000214600.1	processed_pseudogene	chr9:98575308-98576766
chr9	98766975	98768082	+	IAPEz-int	LTR	ERVK	chr9	98767815	98767817	-	ENSMUST00000191987.1,ENSMUSG00000102889.1	Gm37282	ENSMUSG00000102889.1	ENSMUST00000191987.1	TEC	chr9:98767653-98767816
chr9	98766975	98768082	+	IAPEz-int	LTR	ERVK	chr9	98767929	98767931	+	ENSMUST00000194711.1,ENSMUSG00000103276.1	Gm37917	ENSMUSG00000103276.1	ENSMUST00000194711.1	TEC	chr9:98767930-98768321
chr9	98768081	98771358	+	IAPEz-int	LTR	ERVK	chr9	98771104	98771106	+	ENSMUST00000192207.1,ENSMUSG00000103949.1	Gm38226	ENSMUSG00000103949.1	ENSMUST00000192207.1	TEC	chr9:98771105-98771625
chr9	99307310	99307598	-	L1MEd	LINE	L1	chr9	99307582	99307584	+	ENSMUST00000195185.1,ENSMUSG00000103857.1	Gm37249	ENSMUSG00000103857.1	ENSMUST00000195185.1	TEC	chr9:99307583-99310451
chr9	99367025	99367041	-	CYRA11_Mm	Unknown	Y-chromosome	chr9	99367032	99367034	+	ENSMUST00000189195.1,ENSMUSG00000100123.1	Gm28087	ENSMUSG00000100123.1	ENSMUST00000189195.1	lincRNA	chr9:99367033-99368490
chr9	99437243	99437766	-	L1MB7	LINE	L1	chr9	99437380	99437382	-	ENSMUST00000035045.14,ENSMUSG00000032470.17	Mras	ENSMUSG00000032470.17	ENSMUST00000035045.14	protein_coding	chr9:99385420-99437381
chr9	99942762	99943710	+	L1_Mur2	LINE	L1	chr9	99943708	99943710	+	ENSMUST00000104307.1,ENSMUSG00000077495.1	Gm23594	ENSMUSG00000077495.1	ENSMUST00000104307.1	snoRNA	chr9:99943709-99943842
chr9	100022033	100022394	+	L1M2	LINE	L1	chr9	100022299	100022301	+	ENSMUST00000185764.1,ENSMUSG00000101584.2	4930519F24Rik	ENSMUSG00000101584.2	ENSMUST00000185764.1	lincRNA	chr9:100022300-100034672
chr9	100173860	100175310	-	Lx3C	LINE	L1	chr9	100174145	100174147	-	ENSMUST00000192569.1,ENSMUSG00000103407.1	4930540E01Rik	ENSMUSG00000103407.1	ENSMUST00000192569.1	TEC	chr9:100173001-100174146
chr9	100323068	100323603	-	RLTR17	LTR	ERVK	chr9	100323523	100323525	-	ENSMUST00000187644.1,ENSMUSG00000101042.1	Gm28167	ENSMUSG00000101042.1	ENSMUST00000187644.1	lincRNA	chr9:100321611-100323524
chr9	100470566	100470875	+	(GA)n	Simple_repeat	Simple_repeat	chr9	100470608	100470610	-	ENSMUST00000152756.7,ENSMUSG00000044244.18	Il20rb	ENSMUSG00000044244.18	ENSMUST00000152756.7	protein_coding	chr9:100459077-100470609
chr9	100604816	100604988	+	(TCC)n	Simple_repeat	Simple_repeat	chr9	100604987	100604989	-	ENSMUST00000215061.1,ENSMUSG00000111164.1	Gm47803	ENSMUSG00000111164.1	ENSMUST00000215061.1	processed_pseudogene	chr9:100604854-100604988
chr9	100665714	100667056	-	L1_Mus1	LINE	L1	chr9	100665838	100665840	+	ENSMUST00000192389.1,ENSMUSG00000103657.1	Gm37204	ENSMUSG00000103657.1	ENSMUST00000192389.1	TEC	chr9:100665839-100669799
chr9	100848056	100848179	-	B1_Mus2	SINE	Alu	chr9	100848160	100848162	+	ENSMUST00000122824.1,ENSMUSG00000037286.15	Stag1	ENSMUSG00000037286.15	ENSMUST00000122824.1	protein_coding	chr9:100848161-100855814
chr9	101034856	101034877	+	(T)n	Simple_repeat	Simple_repeat	chr9	101034876	101034878	-	ENSMUST00000149322.7,ENSMUSG00000032527.13	Pccb	ENSMUSG00000032527.13	ENSMUST00000149322.7	protein_coding	chr9:100982032-101034877
chr9	101034856	101034877	+	(T)n	Simple_repeat	Simple_repeat	chr9	101034866	101034868	-	ENSMUST00000142676.7,ENSMUSG00000032527.13	Pccb	ENSMUSG00000032527.13	ENSMUST00000142676.7	protein_coding	chr9:100995562-101034867
chr9	101113708	101113821	-	B1_Mus1	SINE	Alu	chr9	101113804	101113806	+	ENSMUST00000195535.1,ENSMUSG00000104392.1	Gm37962	ENSMUSG00000104392.1	ENSMUST00000195535.1	TEC	chr9:101113805-101115838
chr9	101150060	101150450	+	ORR1B1	LTR	ERVL-MaLR	chr9	101150311	101150313	+	ENSMUST00000195293.1,ENSMUSG00000104061.1	Gm37953	ENSMUSG00000104061.1	ENSMUST00000195293.1	TEC	chr9:101150312-101152195
chr9	101251792	101251907	+	C-rich	Low_complexity	Low_complexity	chr9	101251794	101251796	-	ENSMUST00000075941.11,ENSMUSG00000043154.15	Ppp2r3a	ENSMUSG00000043154.15	ENSMUST00000075941.11	protein_coding	chr9:101105084-101251795
chr9	101753200	101759582	-	L1Md_F2	LINE	L1	chr9	101757704	101757706	-	ENSMUST00000215480.1,ENSMUSG00000111696.1	Gm47932	ENSMUSG00000111696.1	ENSMUST00000215480.1	processed_pseudogene	chr9:101754915-101757705
chr9	101753200	101759582	-	L1Md_F2	LINE	L1	chr9	101758862	101758864	-	ENSMUST00000215973.1,ENSMUSG00000111269.1	Gm47933	ENSMUSG00000111269.1	ENSMUST00000215973.1	processed_pseudogene	chr9:101757753-101758863
chr9	101753200	101759582	-	L1Md_F2	LINE	L1	chr9	101758541	101758543	+	ENSMUST00000215212.1,ENSMUSG00000111672.1	Gm47934	ENSMUSG00000111672.1	ENSMUST00000215212.1	processed_pseudogene	chr9:101758542-101758809
chr9	102127886	102128003	+	5S	rRNA	rRNA	chr9	102127887	102127889	+	ENSMUST00000083173.1,ENSMUSG00000065107.1	n-R5s88	ENSMUSG00000065107.1	ENSMUST00000083173.1	rRNA	chr9:102127888-102128005
chr9	102172634	102173029	+	MLT1G	LTR	ERVL-MaLR	chr9	102172737	102172739	+	ENSMUST00000192536.1,ENSMUSG00000102963.1	Gm37945	ENSMUSG00000102963.1	ENSMUST00000192536.1	TEC	chr9:102172738-102177104
chr9	102273455	102273891	+	RMER17A2	LTR	ERVK	chr9	102273735	102273737	+	ENSMUST00000193748.1,ENSMUSG00000102702.1	Gm37260	ENSMUSG00000102702.1	ENSMUST00000193748.1	TEC	chr9:102273736-102274986
chr9	102485579	102487080	+	IAP1-MM_I-int	LTR	ERVK	chr9	102486789	102486791	+	ENSMUST00000213941.1,ENSMUSG00000111859.1	Gm47983	ENSMUSG00000111859.1	ENSMUST00000213941.1	TEC	chr9:102486790-102487080
chr9	102547765	102547856	+	5S	rRNA	rRNA	chr9	102547765	102547767	+	ENSMUST00000157699.1,ENSMUSG00000088324.1	Gm25669	ENSMUSG00000088324.1	ENSMUST00000157699.1	rRNA	chr9:102547766-102547877
chr9	102555997	102556118	+	ORR1A4	LTR	ERVL-MaLR	chr9	102556107	102556109	+	ENSMUST00000189462.1,ENSMUSG00000102126.1	Gm29143	ENSMUSG00000102126.1	ENSMUST00000189462.1	processed_pseudogene	chr9:102556108-102556308
chr9	102559053	102559384	+	L1MEd	LINE	L1	chr9	102559299	102559301	+	ENSMUST00000189074.1,ENSMUSG00000100279.1	Gm29387	ENSMUSG00000100279.1	ENSMUST00000189074.1	lincRNA	chr9:102559300-102570708
chr9	102621859	102622006	-	B1_Mus1	SINE	Alu	chr9	102621963	102621965	-	ENSMUST00000162960.7,ENSMUSG00000032534.18	Cep63	ENSMUSG00000032534.18	ENSMUST00000162960.7	protein_coding	chr9:102590399-102621964
chr9	102628313	102628902	+	MLTR18D_MM	LTR	ERVK	chr9	102628511	102628513	+	ENSMUST00000190354.1,ENSMUSG00000035048.13	Anapc13	ENSMUSG00000035048.13	ENSMUST00000190354.1	protein_coding	chr9:102628512-102629727
chr9	102766315	102766709	-	MTA_Mm	LTR	ERVL-MaLR	chr9	102766508	102766510	-	ENSMUST00000192388.1,ENSMUSG00000102204.1	Gm36958	ENSMUSG00000102204.1	ENSMUST00000192388.1	TEC	chr9:102764635-102766509
chr9	102845703	102845964	-	L1MEc	LINE	L1	chr9	102845832	102845834	+	ENSMUST00000176573.1,ENSMUSG00000032547.12	Ryk	ENSMUSG00000032547.12	ENSMUST00000176573.1	protein_coding	chr9:102845833-102861897
chr9	102851817	102851959	-	B1_Mur4	SINE	Alu	chr9	102851834	102851836	+	ENSMUST00000214076.1,ENSMUSG00000110877.1	Gm47427	ENSMUSG00000110877.1	ENSMUST00000214076.1	TEC	chr9:102851835-102852473
chr9	102991894	102992146	+	7SK	RNA	RNA	chr9	102991894	102991896	+	ENSMUST00000122590.1,ENSMUSG00000084539.1	Gm25842	ENSMUSG00000084539.1	ENSMUST00000122590.1	misc_RNA	chr9:102991895-102992216
chr9	103222634	103222685	+	(TG)n	Simple_repeat	Simple_repeat	chr9	103222674	103222676	-	ENSMUST00000112503.2,ENSMUSG00000032554.15	Trf	ENSMUSG00000032554.15	ENSMUST00000112503.2	protein_coding	chr9:103220895-103222675
chr9	103327817	103327917	-	B4A	SINE	B4	chr9	103327835	103327837	+	ENSMUST00000188840.1,ENSMUSG00000032555.10	Topbp1	ENSMUSG00000032555.10	ENSMUST00000188840.1	protein_coding	chr9:103327836-103329641
chr9	103364884	103364971	+	GC_rich	Low_complexity	Low_complexity	chr9	103364896	103364898	-	ENSMUST00000116517.8,ENSMUSG00000032803.15	Cdv3	ENSMUSG00000032803.15	ENSMUST00000116517.8	protein_coding	chr9:103353104-103364897
chr9	103409137	103409177	+	(TTCC)n	Simple_repeat	Simple_repeat	chr9	103409168	103409170	+	ENSMUST00000188687.1,ENSMUSG00000101419.1	Gm29600	ENSMUSG00000101419.1	ENSMUST00000188687.1	processed_pseudogene	chr9:103409169-103409545
chr9	103440724	103441598	+	MER21C	LTR	ERVL	chr9	103441375	103441377	+	ENSMUST00000218189.1,ENSMUSG00000086236.9	5830418P13Rik	ENSMUSG00000086236.9	ENSMUST00000218189.1	antisense	chr9:103441376-103443815
chr9	103493601	103494037	-	L1Md_F2	LINE	L1	chr9	103493610	103493612	-	ENSMUST00000191069.1,ENSMUSG00000042757.16	Tmem108	ENSMUSG00000042757.16	ENSMUST00000191069.1	protein_coding	chr9:103484439-103493611
chr9	103521747	103521894	+	MLT1G1	LTR	ERVL-MaLR	chr9	103521786	103521788	+	ENSMUST00000214196.1,ENSMUSG00000111278.1	Gm32743	ENSMUSG00000111278.1	ENSMUST00000214196.1	antisense	chr9:103521787-103545977
chr9	103526829	103526919	-	U6	snRNA	snRNA	chr9	103526918	103526920	-	ENSMUST00000158872.1,ENSMUSG00000089497.1	Gm26360	ENSMUSG00000089497.1	ENSMUST00000158872.1	snRNA	chr9:103526817-103526919
chr9	104053305	104053498	+	B2_Mm1a	SINE	B2	chr9	104053326	104053328	+	ENSMUST00000193563.1,ENSMUSG00000104268.1	Gm37750	ENSMUSG00000104268.1	ENSMUST00000193563.1	TEC	chr9:104053327-104053455
chr9	104062982	104063021	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	104062997	104062999	-	ENSMUST00000144195.2,ENSMUSG00000032557.13	Uba5	ENSMUSG00000032557.13	ENSMUST00000144195.2	protein_coding	chr9:104047650-104062998
chr9	104994825	104995185	+	ORR1B2	LTR	ERVL-MaLR	chr9	104994915	104994917	+	ENSMUST00000157579.1,ENSMUSG00000088204.1	Gm23391	ENSMUSG00000088204.1	ENSMUST00000157579.1	miRNA	chr9:104994916-104995019
chr9	105070657	105070900	-	MLT1F2	LTR	ERVL-MaLR	chr9	105070858	105070860	+	ENSMUST00000139022.2,ENSMUSG00000032563.16	Mrpl3	ENSMUSG00000032563.16	ENSMUST00000139022.2	protein_coding	chr9:105070859-105074117
chr9	105085395	105090600	+	L1Md_A	LINE	L1	chr9	105085919	105085921	+	ENSMUST00000213426.1,ENSMUSG00000111472.1	Gm47103	ENSMUSG00000111472.1	ENSMUST00000213426.1	processed_pseudogene	chr9:105085920-105087030
chr9	105085395	105090600	+	L1Md_A	LINE	L1	chr9	105088285	105088287	-	ENSMUST00000213142.1,ENSMUSG00000111044.1	Gm47106	ENSMUSG00000111044.1	ENSMUST00000213142.1	antisense	chr9:105064805-105088286
chr9	105085395	105090600	+	L1Md_A	LINE	L1	chr9	105087074	105087076	+	ENSMUST00000215114.1,ENSMUSG00000111824.1	Gm47102	ENSMUSG00000111824.1	ENSMUST00000215114.1	processed_pseudogene	chr9:105087075-105090181
chr9	105208094	105208278	+	CT-rich	Low_complexity	Low_complexity	chr9	105208195	105208197	+	ENSMUST00000177284.1,ENSMUSG00000093590.1	Gm20643	ENSMUSG00000093590.1	ENSMUST00000177284.1	antisense	chr9:105208196-105211863
chr9	105495080	105495149	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr9	105495093	105495095	-	ENSMUST00000112558.9,ENSMUSG00000032570.17	Atp2c1	ENSMUSG00000032570.17	ENSMUST00000112558.9	protein_coding	chr9:105410438-105495094
chr9	105495080	105495149	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr9	105495132	105495134	-	ENSMUST00000038118.14,ENSMUSG00000032570.17	Atp2c1	ENSMUSG00000032570.17	ENSMUST00000038118.14	protein_coding	chr9:105411358-105495133
chr9	105495080	105495149	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr9	105495104	105495106	-	ENSMUST00000176363.8,ENSMUSG00000032570.17	Atp2c1	ENSMUSG00000032570.17	ENSMUST00000176363.8	protein_coding	chr9:105453538-105495105
chr9	105495080	105495149	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr9	105495104	105495106	-	ENSMUST00000176787.1,ENSMUSG00000032570.17	Atp2c1	ENSMUSG00000032570.17	ENSMUST00000176787.1	protein_coding	chr9:105469107-105495105
chr9	105673481	105673551	-	U4	snRNA	snRNA	chr9	105673550	105673552	-	ENSMUST00000122710.1,ENSMUSG00000084659.1	Gm22720	ENSMUSG00000084659.1	ENSMUST00000122710.1	snRNA	chr9:105673465-105673551
chr9	106001675	106001791	+	U6	snRNA	snRNA	chr9	106001717	106001719	+	ENSMUST00000122765.1,ENSMUSG00000084714.1	Gm24631	ENSMUSG00000084714.1	ENSMUST00000122765.1	snRNA	chr9:106001718-106001798
chr9	106095291	106095500	+	B3	SINE	B2	chr9	106095473	106095475	+	ENSMUST00000192983.1,ENSMUSG00000103434.1	Gm36993	ENSMUSG00000103434.1	ENSMUST00000192983.1	TEC	chr9:106095474-106098453
chr9	106198334	106198365	+	(TG)n	Simple_repeat	Simple_repeat	chr9	106198337	106198339	-	ENSMUST00000150731.1,ENSMUSG00000020253.15	Ppm1m	ENSMUSG00000020253.15	ENSMUST00000150731.1	protein_coding	chr9:106197535-106198338
chr9	106198936	106198957	+	GC_rich	Low_complexity	Low_complexity	chr9	106198941	106198943	-	ENSMUST00000076258.12,ENSMUSG00000020253.15	Ppm1m	ENSMUSG00000020253.15	ENSMUST00000076258.12	protein_coding	chr9:106194951-106198942
chr9	106240010	106240089	+	(CA)n	Simple_repeat	Simple_repeat	chr9	106240032	106240034	-	ENSMUST00000123601.1,ENSMUSG00000032786.16	Alas1	ENSMUSG00000032786.16	ENSMUST00000123601.1	protein_coding	chr9:106236678-106240033
chr9	106248575	106248786	-	ID_B1	SINE	B4	chr9	106248653	106248655	-	ENSMUST00000141118.8,ENSMUSG00000032786.16	Alas1	ENSMUSG00000032786.16	ENSMUST00000141118.8	protein_coding	chr9:106233458-106248654
chr9	106453798	106453861	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	106453841	106453843	+	ENSMUST00000024260.13,ENSMUSG00000023495.13	Pcbp4	ENSMUSG00000023495.13	ENSMUST00000024260.13	protein_coding	chr9:106453842-106464012
chr9	106453798	106453861	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	106453844	106453846	+	ENSMUST00000187975.1,ENSMUSG00000023495.13	Pcbp4	ENSMUSG00000023495.13	ENSMUST00000187975.1	protein_coding	chr9:106453845-106454836
chr9	106685234	106685315	+	MIR3	SINE	MIR	chr9	106685301	106685303	-	ENSMUST00000214885.1,ENSMUSG00000040813.16	Tex264	ENSMUSG00000040813.16	ENSMUST00000214885.1	protein_coding	chr9:106662376-106685302
chr9	106685234	106685315	+	MIR3	SINE	MIR	chr9	106685304	106685306	-	ENSMUST00000190948.1,ENSMUSG00000040813.16	Tex264	ENSMUSG00000040813.16	ENSMUST00000190948.1	protein_coding	chr9:106677994-106685305
chr9	106850844	106850943	-	PB1D9	SINE	Alu	chr9	106850885	106850887	+	ENSMUST00000188343.1,ENSMUSG00000040325.16	Dcaf1	ENSMUSG00000040325.16	ENSMUST00000188343.1	protein_coding	chr9:106850886-106853625
chr9	107096951	107097057	+	U6	snRNA	snRNA	chr9	107096950	107096952	+	ENSMUST00000082583.1,ENSMUSG00000064517.1	Gm22454	ENSMUSG00000064517.1	ENSMUST00000082583.1	snRNA	chr9:107096951-107097057
chr9	107192290	107192812	+	MT2B2	LTR	ERVL	chr9	107192792	107192794	+	ENSMUST00000164248.1,ENSMUSG00000092125.1	AA543401	ENSMUSG00000092125.1	ENSMUST00000164248.1	processed_pseudogene	chr9:107192793-107194061
chr9	107231564	107231592	+	GC_rich	Low_complexity	Low_complexity	chr9	107231581	107231583	-	ENSMUST00000165182.1,ENSMUSG00000039716.12	Dock3	ENSMUSG00000039716.12	ENSMUST00000165182.1	protein_coding	chr9:107108220-107231582
chr9	107257222	107257295	-	MIRc	SINE	MIR	chr9	107257291	107257293	-	ENSMUST00000128175.1,ENSMUSG00000032577.16	Mapkapk3	ENSMUSG00000032577.16	ENSMUST00000128175.1	protein_coding	chr9:107256044-107257292
chr9	107295927	107296051	+	B1_Mm	SINE	Alu	chr9	107296025	107296027	+	ENSMUST00000085102.5,ENSMUSG00000032578.7	Cish	ENSMUSG00000032578.7	ENSMUST00000085102.5	protein_coding	chr9:107296026-107301987
chr9	107543874	107544014	+	B1_Mus2	SINE	Alu	chr9	107543977	107543979	+	ENSMUST00000192951.1,ENSMUSG00000010057.8	Nprl2	ENSMUSG00000010057.8	ENSMUST00000192951.1	protein_coding	chr9:107543978-107544460
chr9	107571162	107571287	-	MIRc	SINE	MIR	chr9	107571209	107571211	+	ENSMUST00000195667.1,ENSMUSG00000010047.12	Hyal2	ENSMUSG00000010047.12	ENSMUST00000195667.1	protein_coding	chr9:107571210-107572203
chr9	107580109	107580150	+	(CAAAA)n	Simple_repeat	Simple_repeat	chr9	107580116	107580118	+	ENSMUST00000093785.5,ENSMUSG00000079334.8	Naa80	ENSMUSG00000079334.8	ENSMUST00000093785.5	protein_coding	chr9:107580117-107584050
chr9	107617447	107617479	+	(A)n	Simple_repeat	Simple_repeat	chr9	107617471	107617473	-	ENSMUST00000193372.1,ENSMUSG00000032562.13	Gnai2	ENSMUSG00000032562.13	ENSMUST00000193372.1	protein_coding	chr9:107616225-107617472
chr9	107620808	107620996	+	B2_Mm1t	SINE	B2	chr9	107620947	107620949	-	ENSMUST00000195762.1,ENSMUSG00000032562.13	Gnai2	ENSMUSG00000032562.13	ENSMUST00000195762.1	protein_coding	chr9:107620012-107620948
chr9	107635357	107635408	+	GC_rich	Low_complexity	Low_complexity	chr9	107635366	107635368	-	ENSMUST00000055704.11,ENSMUSG00000032562.13	Gnai2	ENSMUSG00000032562.13	ENSMUST00000055704.11	protein_coding	chr9:107614125-107635367
chr9	107667416	107667451	+	GC_rich	Low_complexity	Low_complexity	chr9	107667425	107667427	-	ENSMUST00000193932.5,ENSMUSG00000010064.15	Slc38a3	ENSMUSG00000010064.15	ENSMUST00000193932.5	protein_coding	chr9:107651161-107667426
chr9	107760534	107760663	+	B1_Mm	SINE	Alu	chr9	107760562	107760564	-	ENSMUST00000194801.5,ENSMUSG00000032580.12	Rbm5	ENSMUSG00000032580.12	ENSMUST00000194801.5	protein_coding	chr9:107740496-107760563
chr9	107762794	107762980	-	B2_Mm1a	SINE	B2	chr9	107762807	107762809	+	ENSMUST00000194573.1,ENSMUSG00000102899.1	Gm37850	ENSMUSG00000102899.1	ENSMUST00000194573.1	antisense	chr9:107762808-107763587
chr9	107780291	107780471	-	B2_Mm2	SINE	B2	chr9	107780300	107780302	-	ENSMUST00000183152.2,ENSMUSG00000032582.14	Rbm6	ENSMUSG00000032582.14	ENSMUST00000183152.2	protein_coding	chr9:107777956-107780301
chr9	107819849	107820036	+	L1M5	LINE	L1	chr9	107820011	107820013	-	ENSMUST00000193842.1,ENSMUSG00000102670.1	Gm37436	ENSMUSG00000102670.1	ENSMUST00000193842.1	TEC	chr9:107818928-107820012
chr9	107851242	107851433	+	B2_Mm2	SINE	B2	chr9	107851432	107851434	-	ENSMUST00000183179.1,ENSMUSG00000032582.14	Rbm6	ENSMUSG00000032582.14	ENSMUST00000183179.1	protein_coding	chr9:107847212-107851433
chr9	108016589	108016736	-	B1_Mus2	SINE	Alu	chr9	108016607	108016609	-	ENSMUST00000191858.1,ENSMUSG00000102540.1	Gm38134	ENSMUSG00000102540.1	ENSMUST00000191858.1	antisense	chr9:108010976-108016608
chr9	108072969	108073156	+	(GGGAGA)n	Simple_repeat	Simple_repeat	chr9	108073120	108073122	-	ENSMUST00000162152.1,ENSMUSG00000041528.15	Rnf123	ENSMUSG00000041528.15	ENSMUST00000162152.1	protein_coding	chr9:108071382-108073121
chr9	108191300	108191431	+	B1_Mur2	SINE	Alu	chr9	108191347	108191349	-	ENSMUST00000194491.1,ENSMUSG00000102538.1	Gm37230	ENSMUSG00000102538.1	ENSMUST00000194491.1	TEC	chr9:108190531-108191348
chr9	108263931	108264028	+	(CCCCG)n	Simple_repeat	Simple_repeat	chr9	108263957	108263959	-	ENSMUST00000191899.5,ENSMUSG00000039952.15	Dag1	ENSMUSG00000039952.15	ENSMUST00000191899.5	protein_coding	chr9:108204634-108263958
chr9	108293749	108293903	-	B1_Mur3	SINE	Alu	chr9	108293854	108293856	+	ENSMUST00000192035.1,ENSMUSG00000032606.7	Nicn1	ENSMUSG00000032606.7	ENSMUST00000192035.1	protein_coding	chr9:108293855-108294780
chr9	108330471	108330643	-	Lx9	LINE	L1	chr9	108330559	108330561	+	ENSMUST00000193424.1,ENSMUSG00000007815.13	Rhoa	ENSMUSG00000007815.13	ENSMUST00000193424.1	protein_coding	chr9:108330560-108336751
chr9	108347813	108347855	+	(CGTG)n	Simple_repeat	Simple_repeat	chr9	108347852	108347854	+	ENSMUST00000035237.11,ENSMUSG00000032612.14	Usp4	ENSMUSG00000032612.14	ENSMUST00000035237.11	protein_coding	chr9:108347853-108392545
chr9	108359827	108359949	+	MT2B	LTR	ERVL	chr9	108359843	108359845	+	ENSMUST00000194034.1,ENSMUSG00000032612.14	Usp4	ENSMUSG00000032612.14	ENSMUST00000194034.1	protein_coding	chr9:108359844-108362862
chr9	108388981	108389125	-	B1F	SINE	Alu	chr9	108389081	108389083	+	ENSMUST00000195351.1,ENSMUSG00000104399.1	Gm37963	ENSMUSG00000104399.1	ENSMUST00000195351.1	sense_intronic	chr9:108389082-108390205
chr9	108513447	108513605	-	RSINE1	SINE	B4	chr9	108513543	108513545	+	ENSMUST00000154311.1,ENSMUSG00000032604.16	Qars	ENSMUSG00000032604.16	ENSMUST00000154311.1	protein_coding	chr9:108513544-108514130
chr9	108528359	108528505	+	RSINE1	SINE	B4	chr9	108528411	108528413	+	ENSMUST00000194741.1,ENSMUSG00000006673.14	Qrich1	ENSMUSG00000006673.14	ENSMUST00000194741.1	protein_coding	chr9:108528412-108533644
chr9	108530717	108530866	+	B1_Mus1	SINE	Alu	chr9	108530831	108530833	+	ENSMUST00000193127.1,ENSMUSG00000103621.1	Gm38366	ENSMUSG00000103621.1	ENSMUST00000193127.1	TEC	chr9:108530832-108532765
chr9	108585311	108585424	-	URR1A	DNA	hAT-Charlie	chr9	108585360	108585362	-	ENSMUST00000194112.1,ENSMUSG00000102770.1	Gm38163	ENSMUSG00000102770.1	ENSMUST00000194112.1	sense_intronic	chr9:108584756-108585361
chr9	108630067	108630223	-	ID_B1	SINE	B4	chr9	108630143	108630145	-	ENSMUST00000195741.5,ENSMUSG00000064145.12	Arih2	ENSMUSG00000064145.12	ENSMUST00000195741.5	protein_coding	chr9:108614768-108630144
chr9	108653494	108653928	-	MT2_Mm	LTR	ERVL	chr9	108653727	108653729	-	ENSMUST00000116956.1,ENSMUSG00000095798.1	Gm26298	ENSMUSG00000095798.1	ENSMUST00000116956.1	miRNA	chr9:108653608-108653728
chr9	108738766	108738858	-	U6	snRNA	snRNA	chr9	108738857	108738859	-	ENSMUST00000083740.1,ENSMUSG00000065674.1	Gm24259	ENSMUSG00000065674.1	ENSMUST00000083740.1	snRNA	chr9:108738752-108738858
chr9	108739669	108739696	+	(T)n	Simple_repeat	Simple_repeat	chr9	108739682	108739684	+	ENSMUST00000193215.1,ENSMUSG00000032601.13	Prkar2a	ENSMUSG00000032601.13	ENSMUST00000193215.1	protein_coding	chr9:108739683-108741013
chr9	108748179	108748253	+	ID4	SINE	ID	chr9	108748244	108748246	+	ENSMUST00000195263.1,ENSMUSG00000032601.13	Prkar2a	ENSMUSG00000032601.13	ENSMUST00000195263.1	protein_coding	chr9:108748245-108749503
chr9	108808353	108808403	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr9	108808367	108808369	+	ENSMUST00000035218.8,ENSMUSG00000032598.8	Nckipsd	ENSMUSG00000032598.8	ENSMUST00000035218.8	protein_coding	chr9:108808368-108818844
chr9	108808353	108808403	+	(CGCGG)n	Simple_repeat	Simple_repeat	chr9	108808372	108808374	+	ENSMUST00000195323.1,ENSMUSG00000032598.8	Nckipsd	ENSMUSG00000032598.8	ENSMUST00000195323.1	protein_coding	chr9:108808373-108811149
chr9	108813311	108813450	+	B1_Mm	SINE	Alu	chr9	108813427	108813429	+	ENSMUST00000194413.1,ENSMUSG00000032598.8	Nckipsd	ENSMUSG00000032598.8	ENSMUST00000194413.1	protein_coding	chr9:108813428-108814326
chr9	108826204	108826328	+	G-rich	Low_complexity	Low_complexity	chr9	108826319	108826321	+	ENSMUST00000024238.10,ENSMUSG00000023473.13	Celsr3	ENSMUSG00000023473.13	ENSMUST00000024238.10	protein_coding	chr9:108826320-108852969
chr9	108826204	108826328	+	G-rich	Low_complexity	Low_complexity	chr9	108826319	108826321	+	ENSMUST00000213524.2,ENSMUSG00000023473.13	Celsr3	ENSMUSG00000023473.13	ENSMUST00000213524.2	protein_coding	chr9:108826320-108852969
chr9	108946096	108946229	-	RSINE1	SINE	B4	chr9	108946164	108946166	+	ENSMUST00000193332.1,ENSMUSG00000025651.14	Uqcrc1	ENSMUSG00000025651.14	ENSMUST00000193332.1	protein_coding	chr9:108946165-108949619
chr9	108948183	108948312	+	B1F2	SINE	Alu	chr9	108948310	108948312	+	ENSMUST00000192918.1,ENSMUSG00000025651.14	Uqcrc1	ENSMUSG00000025651.14	ENSMUST00000192918.1	protein_coding	chr9:108948311-108949112
chr9	109038507	109038565	+	C-rich	Low_complexity	Low_complexity	chr9	109038564	109038566	+	ENSMUST00000112059.9,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000112059.9	protein_coding	chr9:109038565-109057777
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051095	109051097	+	ENSMUST00000198708.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000198708.4	protein_coding	chr9:109051096-109056955
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051154	109051156	+	ENSMUST00000200629.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000200629.4	protein_coding	chr9:109051155-109056378
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051158	109051160	+	ENSMUST00000200515.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000200515.4	protein_coding	chr9:109051159-109057024
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051179	109051181	+	ENSMUST00000197689.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000197689.4	protein_coding	chr9:109051180-109056352
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051197	109051199	+	ENSMUST00000196954.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000196954.4	protein_coding	chr9:109051198-109057013
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051199	109051201	+	ENSMUST00000198376.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000198376.4	protein_coding	chr9:109051200-109056411
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051201	109051203	+	ENSMUST00000197483.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000197483.4	protein_coding	chr9:109051202-109056731
chr9	109051096	109051232	-	L1M3	LINE	L1	chr9	109051210	109051212	+	ENSMUST00000198295.4,ENSMUSG00000025647.16	Shisa5	ENSMUSG00000025647.16	ENSMUST00000198295.4	protein_coding	chr9:109051211-109056374
chr9	109069453	109069576	+	B1_Mur2	SINE	Alu	chr9	109069518	109069520	-	ENSMUST00000161270.1,ENSMUSG00000025646.9	Atrip	ENSMUSG00000025646.9	ENSMUST00000161270.1	protein_coding	chr9:109067465-109069519
chr9	109095351	109095401	+	GC_rich	Low_complexity	Low_complexity	chr9	109095388	109095390	+	ENSMUST00000072093.12,ENSMUSG00000053646.13	Plxnb1	ENSMUSG00000053646.13	ENSMUST00000072093.12	protein_coding	chr9:109095389-109119917
chr9	109295541	109295648	-	U6	snRNA	snRNA	chr9	109295647	109295649	-	ENSMUST00000179288.1,ENSMUSG00000094717.1	Gm22821	ENSMUSG00000094717.1	ENSMUST00000179288.1	snRNA	chr9:109295542-109295648
chr9	109347523	109347630	-	U6	snRNA	snRNA	chr9	109347629	109347631	-	ENSMUST00000178217.1,ENSMUSG00000096412.1	Gm25484	ENSMUSG00000096412.1	ENSMUST00000178217.1	snRNA	chr9:109347524-109347630
chr9	109358228	109358335	-	U6	snRNA	snRNA	chr9	109358334	109358336	-	ENSMUST00000178055.1,ENSMUSG00000096786.1	Gm24641	ENSMUSG00000096786.1	ENSMUST00000178055.1	snRNA	chr9:109358229-109358335
chr9	109440041	109440137	-	B1_Mur4	SINE	Alu	chr9	109440127	109440129	+	ENSMUST00000196515.1,ENSMUSG00000105162.1	Gm42494	ENSMUSG00000105162.1	ENSMUST00000196515.1	TEC	chr9:109440128-109443178
chr9	109537063	109537186	-	B1_Mur1	SINE	Alu	chr9	109537099	109537101	+	ENSMUST00000196601.1,ENSMUSG00000104674.1	Gm42756	ENSMUSG00000104674.1	ENSMUST00000196601.1	antisense	chr9:109537100-109552780
chr9	109541039	109542939	-	ERVB4_2-I_MM-int	LTR	ERVK	chr9	109542912	109542914	-	ENSMUST00000199162.1,ENSMUSG00000105948.1	Gm43089	ENSMUSG00000105948.1	ENSMUST00000199162.1	processed_pseudogene	chr9:109541701-109542913
chr9	109572729	109577027	-	RLTR45-int	LTR	ERVK	chr9	109574223	109574225	-	ENSMUST00000198533.1,ENSMUSG00000106495.1	Gm42755	ENSMUSG00000106495.1	ENSMUST00000198533.1	TEC	chr9:109572732-109574224
chr9	109773628	109774044	+	RMER17D2	LTR	ERVK	chr9	109773902	109773904	-	ENSMUST00000198666.1,ENSMUSG00000104614.5	Fbxw27	ENSMUSG00000104614.5	ENSMUST00000198666.1	protein_coding	chr9:109766052-109773903
chr9	109773628	109774044	+	RMER17D2	LTR	ERVK	chr9	109773844	109773846	-	ENSMUST00000199197.5,ENSMUSG00000104614.5	Fbxw27	ENSMUSG00000104614.5	ENSMUST00000199197.5	protein_coding	chr9:109772082-109773845
chr9	109833264	109833369	-	L2b	LINE	L2	chr9	109833290	109833292	+	ENSMUST00000196425.1,ENSMUSG00000032478.14	Nme6	ENSMUSG00000032478.14	ENSMUST00000196425.1	protein_coding	chr9:109833291-109843116
chr9	109887620	109887757	+	B1_Mm	SINE	Alu	chr9	109887715	109887717	+	ENSMUST00000199353.1,ENSMUSG00000032477.14	Cdc25a	ENSMUSG00000032477.14	ENSMUST00000199353.1	protein_coding	chr9:109887716-109892367
chr9	109990272	109992110	-	MurERV4-int	LTR	ERVK	chr9	109991833	109991835	-	ENSMUST00000200260.1,ENSMUSG00000105856.1	Gm43732	ENSMUSG00000105856.1	ENSMUST00000200260.1	antisense	chr9:109988967-109991834
chr9	110109971	110110113	+	B1_Mus1	SINE	Alu	chr9	110109994	110109996	-	ENSMUST00000198026.4,ENSMUSG00000032480.17	Dhx30	ENSMUSG00000032480.17	ENSMUST00000198026.4	protein_coding	chr9:110084321-110109995
chr9	110110578	110110747	+	B2_Mm2	SINE	B2	chr9	110110595	110110597	-	ENSMUST00000200029.4,ENSMUSG00000032480.17	Dhx30	ENSMUSG00000032480.17	ENSMUST00000200029.4	protein_coding	chr9:110089801-110110596
chr9	110114943	110115084	-	B1F	SINE	Alu	chr9	110115076	110115078	-	ENSMUST00000165596.7,ENSMUSG00000032480.17	Dhx30	ENSMUSG00000032480.17	ENSMUST00000165596.7	protein_coding	chr9:110084321-110115077
chr9	110117089	110117132	+	GC_rich	Low_complexity	Low_complexity	chr9	110117107	110117109	-	ENSMUST00000198843.1,ENSMUSG00000032480.17	Dhx30	ENSMUSG00000032480.17	ENSMUST00000198843.1	protein_coding	chr9:110115422-110117108
chr9	110253606	110254579	-	RLTR10-int	LTR	ERVK	chr9	110254143	110254145	-	ENSMUST00000200140.1,ENSMUSG00000104988.1	Gm43622	ENSMUSG00000104988.1	ENSMUST00000200140.1	TEC	chr9:110252126-110254144
chr9	110281246	110281388	+	LSU-rRNA_Hsa	rRNA	rRNA	chr9	110281286	110281288	+	ENSMUST00000184437.1,ENSMUSG00000098973.1	Mir6236	ENSMUSG00000098973.1	ENSMUST00000184437.1	miRNA	chr9:110281287-110281409
chr9	110309620	110309715	-	B4A	SINE	B4	chr9	110309646	110309648	+	ENSMUST00000196855.1,ENSMUSG00000054836.12	Elp6	ENSMUSG00000054836.12	ENSMUST00000196855.1	protein_coding	chr9:110309647-110314094
chr9	110344144	110344265	-	RSINE1	SINE	B4	chr9	110344198	110344200	+	ENSMUST00000199709.2,ENSMUSG00000032485.14	Scap	ENSMUSG00000032485.14	ENSMUST00000199709.2	protein_coding	chr9:110344199-110353164
chr9	110361061	110361208	+	B1_Mur4	SINE	Alu	chr9	110361183	110361185	+	ENSMUST00000196465.1,ENSMUSG00000032485.14	Scap	ENSMUSG00000032485.14	ENSMUST00000196465.1	protein_coding	chr9:110361184-110363684
chr9	110532552	110532711	+	(CCG)n	Simple_repeat	Simple_repeat	chr9	110532596	110532598	+	ENSMUST00000153838.7,ENSMUSG00000044791.16	Setd2	ENSMUSG00000044791.16	ENSMUST00000153838.7	protein_coding	chr9:110532597-110618633
chr9	110655614	110655759	-	B1_Mm	SINE	Alu	chr9	110655678	110655680	+	ENSMUST00000198086.1,ENSMUSG00000105127.1	Gm42470	ENSMUSG00000105127.1	ENSMUST00000198086.1	lincRNA	chr9:110655679-110656455
chr9	110743664	110743752	+	C-rich	Low_complexity	Low_complexity	chr9	110743685	110743687	-	ENSMUST00000166716.7,ENSMUSG00000032492.14	Pth1r	ENSMUSG00000032492.14	ENSMUST00000166716.7	protein_coding	chr9:110722088-110743686
chr9	110826682	110826821	-	B3A	SINE	B2	chr9	110826689	110826691	+	ENSMUST00000077549.6,ENSMUSG00000058398.6	Prss43	ENSMUSG00000058398.6	ENSMUST00000077549.6	protein_coding	chr9:110826690-110831839
chr9	110925363	110925489	-	B1_Mur2	SINE	Alu	chr9	110925402	110925404	+	ENSMUST00000179216.1,ENSMUSG00000096245.1	Gm24269	ENSMUSG00000096245.1	ENSMUST00000179216.1	miRNA	chr9:110925403-110925479
chr9	110974141	110975447	-	IAPEz-int	LTR	ERVK	chr9	110974431	110974433	+	ENSMUST00000197846.1,ENSMUSG00000106234.1	Gm43535	ENSMUSG00000106234.1	ENSMUST00000197846.1	TEC	chr9:110974432-110974595
chr9	111053113	111053254	+	B1_Mus2	SINE	Alu	chr9	111053192	111053194	-	ENSMUST00000197851.1,ENSMUSG00000104654.1	Gm43814	ENSMUSG00000104654.1	ENSMUST00000197851.1	TEC	chr9:111052781-111053193
chr9	111074391	111075492	+	RLTR25A	LTR	ERVK	chr9	111075393	111075395	+	ENSMUST00000157671.1,ENSMUSG00000088296.1	Gm26409	ENSMUSG00000088296.1	ENSMUST00000157671.1	snRNA	chr9:111075394-111075456
chr9	111117571	111117609	+	(TG)n	Simple_repeat	Simple_repeat	chr9	111117591	111117593	+	ENSMUST00000200094.4,ENSMUSG00000032497.17	Lrrfip2	ENSMUSG00000032497.17	ENSMUST00000200094.4	protein_coding	chr9:111117592-111199774
chr9	111244653	111244867	-	7SK	RNA	RNA	chr9	111244866	111244868	-	ENSMUST00000158457.1,ENSMUSG00000089082.1	Gm24860	ENSMUSG00000089082.1	ENSMUST00000158457.1	misc_RNA	chr9:111244592-111244867
chr9	111311938	111311987	+	GC_rich	Low_complexity	Low_complexity	chr9	111311939	111311941	+	ENSMUST00000200151.1,ENSMUSG00000062296.8	Trank1	ENSMUSG00000062296.8	ENSMUST00000200151.1	protein_coding	chr9:111311940-111357961
chr9	111411283	111411669	+	Lx5	LINE	L1	chr9	111411433	111411435	+	ENSMUST00000198173.1,ENSMUSG00000105592.1	Gm42527	ENSMUSG00000105592.1	ENSMUST00000198173.1	TEC	chr9:111411434-111412913
chr9	112234963	112235098	+	(TC)n	Simple_repeat	Simple_repeat	chr9	112235017	112235019	-	ENSMUST00000162097.7,ENSMUSG00000032503.18	Arpp21	ENSMUSG00000032503.18	ENSMUST00000162097.7	protein_coding	chr9:112065258-112235018
chr9	112234963	112235098	+	(TC)n	Simple_repeat	Simple_repeat	chr9	112235017	112235019	-	ENSMUST00000159055.7,ENSMUSG00000032503.18	Arpp21	ENSMUSG00000032503.18	ENSMUST00000159055.7	protein_coding	chr9:112155476-112235018
chr9	112256468	112256722	+	Zaphod	DNA	hAT-Tip100	chr9	112256573	112256575	+	ENSMUST00000163302.1,ENSMUSG00000087038.9	2900079G21Rik	ENSMUSG00000087038.9	ENSMUST00000163302.1	lincRNA	chr9:112256574-112348925
chr9	112461607	112461957	+	MTEb	LTR	ERVL-MaLR	chr9	112461629	112461631	-	ENSMUST00000216779.1,ENSMUSG00000110876.1	4933411E02Rik	ENSMUSG00000110876.1	ENSMUST00000216779.1	lincRNA	chr9:112390104-112461630
chr9	112483502	112490056	-	L1Md_A	LINE	L1	chr9	112489615	112489617	+	ENSMUST00000183711.1,ENSMUSG00000098345.1	Gm27847	ENSMUSG00000098345.1	ENSMUST00000183711.1	miRNA	chr9:112489616-112489722
chr9	112522435	112522617	-	MTD	LTR	ERVL-MaLR	chr9	112522528	112522530	+	ENSMUST00000179604.1,ENSMUSG00000096353.1	Gm24957	ENSMUSG00000096353.1	ENSMUST00000179604.1	snoRNA	chr9:112522529-112522660
chr9	113122921	113123198	-	B4	SINE	B4	chr9	113123028	113123030	-	ENSMUST00000213712.1,ENSMUSG00000110996.1	Gm36251	ENSMUSG00000110996.1	ENSMUST00000213712.1	lincRNA	chr9:113070983-113123029
chr9	113122921	113123198	-	B4	SINE	B4	chr9	113123028	113123030	-	ENSMUST00000214620.1,ENSMUSG00000110996.1	Gm36251	ENSMUSG00000110996.1	ENSMUST00000214620.1	lincRNA	chr9:113086666-113123029
chr9	113352319	113352484	-	L2a	LINE	L2	chr9	113352368	113352370	-	ENSMUST00000215648.1,ENSMUSG00000110784.1	Gm39436	ENSMUSG00000110784.1	ENSMUST00000215648.1	lincRNA	chr9:113324251-113352369
chr9	113403475	113403705	+	7SK	RNA	RNA	chr9	113403474	113403476	+	ENSMUST00000157192.1,ENSMUSG00000087817.1	Gm22492	ENSMUSG00000087817.1	ENSMUST00000157192.1	misc_RNA	chr9:113403475-113403771
chr9	113611590	113612004	-	MTD	LTR	ERVL-MaLR	chr9	113611734	113611736	-	ENSMUST00000209241.1,ENSMUSG00000109890.2	AU023762	ENSMUSG00000109890.2	ENSMUST00000209241.1	lincRNA	chr9:113498272-113611735
chr9	113611590	113612004	-	MTD	LTR	ERVL-MaLR	chr9	113611782	113611784	-	ENSMUST00000209716.1,ENSMUSG00000109890.2	AU023762	ENSMUSG00000109890.2	ENSMUST00000209716.1	lincRNA	chr9:113604206-113611783
chr9	114057004	114057147	-	ID_B1	SINE	B4	chr9	114057139	114057141	+	ENSMUST00000135338.2,ENSMUSG00000086596.2	Susd5	ENSMUSG00000086596.2	ENSMUST00000135338.2	protein_coding	chr9:114057140-114098728
chr9	114283433	114288915	+	L1Md_T	LINE	L1	chr9	114284645	114284647	-	ENSMUST00000214265.1,ENSMUSG00000064299.6	4921528I07Rik	ENSMUSG00000064299.6	ENSMUST00000214265.1	processed_transcript	chr9:114244005-114284646
chr9	114919352	114919372	+	(CAAA)n	Simple_repeat	Simple_repeat	chr9	114919353	114919355	-	ENSMUST00000146266.1,ENSMUSG00000050627.13	Gpd1l	ENSMUSG00000050627.13	ENSMUST00000146266.1	protein_coding	chr9:114910980-114919354
chr9	114990684	114990779	-	MER58A	DNA	hAT-Charlie	chr9	114990747	114990749	+	ENSMUST00000182384.7,ENSMUSG00000040875.12	Osbpl10	ENSMUSG00000040875.12	ENSMUST00000182384.7	protein_coding	chr9:114990748-115232225
chr9	115016363	115016706	-	MTEb	LTR	ERVL-MaLR	chr9	115016662	115016664	+	ENSMUST00000182199.7,ENSMUSG00000040875.12	Osbpl10	ENSMUSG00000040875.12	ENSMUST00000182199.7	protein_coding	chr9:115016663-115232219
chr9	115120204	115120554	-	RLTR14	LTR	ERV1	chr9	115120538	115120540	+	ENSMUST00000182413.1,ENSMUSG00000040875.12	Osbpl10	ENSMUSG00000040875.12	ENSMUST00000182413.1	protein_coding	chr9:115120539-115216812
chr9	115381838	115382268	+	RMER12C	LTR	ERVK	chr9	115381959	115381961	+	ENSMUST00000116845.1,ENSMUSG00000080495.1	Gm26303	ENSMUSG00000080495.1	ENSMUST00000116845.1	miRNA	chr9:115381960-115382078
chr9	115381838	115382268	+	RMER12C	LTR	ERVK	chr9	115382098	115382100	+	ENSMUST00000116986.1,ENSMUSG00000080636.1	Gm25510	ENSMUSG00000080636.1	ENSMUST00000116986.1	miRNA	chr9:115382099-115382221
chr9	115411013	115411378	-	RLTR17B_Mm	LTR	ERVK	chr9	115411352	115411354	-	ENSMUST00000178754.1,ENSMUSG00000095467.1	Gm22243	ENSMUSG00000095467.1	ENSMUST00000178754.1	miRNA	chr9:115411234-115411353
chr9	115626597	115626718	-	5S	rRNA	rRNA	chr9	115626717	115626719	-	ENSMUST00000082810.2,ENSMUSG00000094630.1	n-R5s92	ENSMUSG00000094630.1	ENSMUST00000082810.2	rRNA	chr9:115626600-115626718
chr9	116001670	116001828	+	(CA)n	Simple_repeat	Simple_repeat	chr9	116001787	116001789	-	ENSMUST00000130584.1,ENSMUSG00000087469.1	Gm16142	ENSMUSG00000087469.1	ENSMUST00000130584.1	antisense	chr9:115990956-116001788
chr9	116326901	116327346	-	RLTR23	LTR	ERV1	chr9	116327336	116327338	+	ENSMUST00000215052.1,ENSMUSG00000110752.1	D730003K21Rik	ENSMUSG00000110752.1	ENSMUST00000215052.1	lincRNA	chr9:116327337-116339511
chr9	117872563	117872589	+	(CTGGGG)n	Simple_repeat	Simple_repeat	chr9	117872583	117872585	-	ENSMUST00000210659.1,ENSMUSG00000110408.1	Gm45881	ENSMUSG00000110408.1	ENSMUST00000210659.1	lincRNA	chr9:117708192-117872584
chr9	117999331	117999371	+	(TG)n	Simple_repeat	Simple_repeat	chr9	117999335	117999337	+	ENSMUST00000104810.2,ENSMUSG00000094677.1	Gm22008	ENSMUSG00000094677.1	ENSMUST00000104810.2	miRNA	chr9:117999336-117999430
chr9	118287785	118288023	+	7SK	RNA	RNA	chr9	118287785	118287787	+	ENSMUST00000122659.1,ENSMUSG00000084608.1	Gm22198	ENSMUSG00000084608.1	ENSMUST00000122659.1	misc_RNA	chr9:118287786-118288092
chr9	118405901	118406400	-	RLTR11A2	LTR	ERVK	chr9	118406098	118406100	-	ENSMUST00000182885.1,ENSMUSG00000098161.1	Platr11	ENSMUSG00000098161.1	ENSMUST00000182885.1	lincRNA	chr9:118404097-118406099
chr9	118466993	118467064	-	U4	snRNA	snRNA	chr9	118467063	118467065	-	ENSMUST00000122566.1,ENSMUSG00000084515.1	Gm22479	ENSMUSG00000084515.1	ENSMUST00000122566.1	snRNA	chr9:118466984-118467064
chr9	118478318	118478395	+	(GGAA)n	Simple_repeat	Simple_repeat	chr9	118478343	118478345	+	ENSMUST00000035020.14,ENSMUSG00000032446.14	Eomes	ENSMUSG00000032446.14	ENSMUST00000035020.14	protein_coding	chr9:118478344-118486132
chr9	118506423	118506456	+	GC_rich	Low_complexity	Low_complexity	chr9	118506450	118506452	+	ENSMUST00000212097.1,ENSMUSG00000038708.10	Golga4	ENSMUSG00000038708.10	ENSMUST00000212097.1	protein_coding	chr9:118506451-118556718
chr9	119159142	119159213	-	ID_B1	SINE	B4	chr9	119159160	119159162	+	ENSMUST00000093527.3,ENSMUSG00000074029.2	Gm47289	ENSMUSG00000074029.2	ENSMUST00000093527.3	protein_coding	chr9:119159161-119161669
chr9	119823752	119823927	+	LTR33	LTR	ERVL	chr9	119823859	119823861	-	ENSMUST00000215718.1,ENSMUSG00000034115.10	Scn11a	ENSMUSG00000034115.10	ENSMUST00000215718.1	protein_coding	chr9:119753759-119823860
chr9	119917802	119918153	-	ORR1B1	LTR	ERVL-MaLR	chr9	119918130	119918132	+	ENSMUST00000216349.1,ENSMUSG00000032512.7	Wdr48	ENSMUSG00000032512.7	ENSMUST00000216349.1	protein_coding	chr9:119918131-119920624
chr9	119921035	119921554	-	L1ME3G	LINE	L1	chr9	119921297	119921299	+	ENSMUST00000217492.1,ENSMUSG00000032512.7	Wdr48	ENSMUSG00000032512.7	ENSMUST00000217492.1	protein_coding	chr9:119921298-119922679
chr9	119984600	119984699	+	L2c	LINE	L2	chr9	119984657	119984659	-	ENSMUST00000213936.1,ENSMUSG00000032515.8	Csrnp1	ENSMUSG00000032515.8	ENSMUST00000213936.1	protein_coding	chr9:119974261-119984658
chr9	120095506	120095687	+	B3	SINE	B2	chr9	120095662	120095664	+	ENSMUST00000217495.1,ENSMUSG00000111546.1	Gm47050	ENSMUSG00000111546.1	ENSMUST00000217495.1	TEC	chr9:120095663-120097838
chr9	120129349	120129551	+	U17	snRNA	snRNA	chr9	120129350	120129352	+	ENSMUST00000082446.1,ENSMUSG00000064380.1	Gm26448	ENSMUSG00000064380.1	ENSMUST00000082446.1	snoRNA	chr9:120129351-120129553
chr9	120135002	120135086	+	B3A	SINE	B2	chr9	120135014	120135016	-	ENSMUST00000216043.1,ENSMUSG00000111028.1	Gm5922	ENSMUSG00000111028.1	ENSMUST00000216043.1	lincRNA	chr9:120134054-120135015
chr9	120153004	120153115	+	MLTR14	LTR	ERV1	chr9	120153044	120153046	+	ENSMUST00000214943.1,ENSMUSG00000032517.16	Mobp	ENSMUSG00000032517.16	ENSMUST00000214943.1	protein_coding	chr9:120153045-120173213
chr9	120172912	120173036	+	(CA)n	Simple_repeat	Simple_repeat	chr9	120173028	120173030	+	ENSMUST00000214008.1,ENSMUSG00000032517.16	Mobp	ENSMUSG00000032517.16	ENSMUST00000214008.1	protein_coding	chr9:120173029-120179667
chr9	120182553	120182590	+	(TTTA)n	Simple_repeat	Simple_repeat	chr9	120182563	120182565	+	ENSMUST00000193250.1,ENSMUSG00000104494.1	Gm37111	ENSMUSG00000104494.1	ENSMUST00000193250.1	TEC	chr9:120182564-120183197
chr9	120259446	120259793	-	MTD	LTR	ERVL-MaLR	chr9	120259627	120259629	+	ENSMUST00000213406.1,ENSMUSG00000111498.1	Gm47059	ENSMUSG00000111498.1	ENSMUST00000213406.1	lincRNA	chr9:120259628-120264358
chr9	120301290	120301689	+	MTB	LTR	ERVL-MaLR	chr9	120301512	120301514	+	ENSMUST00000133173.2,ENSMUSG00000041794.13	Myrip	ENSMUSG00000041794.13	ENSMUST00000133173.2	protein_coding	chr9:120301513-120422262
chr9	120385926	120386357	+	RLTR10C	LTR	ERVK	chr9	120386308	120386310	+	ENSMUST00000214784.1,ENSMUSG00000041794.13	Myrip	ENSMUSG00000041794.13	ENSMUST00000214784.1	protein_coding	chr9:120386309-120432951
chr9	120614621	120614822	-	RLTR10C	LTR	ERVK	chr9	120614747	120614749	-	ENSMUST00000216606.1,ENSMUSG00000110760.1	Gm39456	ENSMUSG00000110760.1	ENSMUST00000216606.1	lincRNA	chr9:120612248-120614748
chr9	120706179	120706333	-	MLT1H	LTR	ERVL-MaLR	chr9	120706236	120706238	-	ENSMUST00000213340.1,ENSMUSG00000111679.1	Gm47063	ENSMUSG00000111679.1	ENSMUST00000213340.1	TEC	chr9:120705889-120706237
chr9	120755506	120755631	-	RLTR20A4	LTR	ERVK	chr9	120755525	120755527	-	ENSMUST00000215769.1,ENSMUSG00000110726.1	Gm18101	ENSMUSG00000110726.1	ENSMUST00000215769.1	processed_pseudogene	chr9:120754979-120755526
chr9	120791541	120791785	-	7SK	RNA	RNA	chr9	120791784	120791786	-	ENSMUST00000082463.1,ENSMUSG00000064397.1	Gm23624	ENSMUSG00000064397.1	ENSMUST00000082463.1	misc_RNA	chr9:120791465-120791785
chr9	120791811	120792170	+	MTD	LTR	ERVL-MaLR	chr9	120791985	120791987	+	ENSMUST00000216419.1,ENSMUSG00000111270.1	Gm47066	ENSMUSG00000111270.1	ENSMUST00000216419.1	lincRNA	chr9:120791986-120794882
chr9	120791811	120792170	+	MTD	LTR	ERVL-MaLR	chr9	120791990	120791992	+	ENSMUST00000216870.1,ENSMUSG00000111270.1	Gm47066	ENSMUSG00000111270.1	ENSMUST00000216870.1	lincRNA	chr9:120791991-120794628
chr9	120834212	120834551	+	ORR1E	LTR	ERVL-MaLR	chr9	120834362	120834364	+	ENSMUST00000215662.1,ENSMUSG00000111720.1	Gm39459	ENSMUSG00000111720.1	ENSMUST00000215662.1	lincRNA	chr9:120834363-120844936
chr9	120869062	120869175	+	(TCTA)n	Simple_repeat	Simple_repeat	chr9	120869159	120869161	+	ENSMUST00000216269.1,ENSMUSG00000111094.1	Gm34425	ENSMUSG00000111094.1	ENSMUST00000216269.1	lincRNA	chr9:120869160-120873860
chr9	120915021	120915358	-	ORR1E	LTR	ERVL-MaLR	chr9	120915251	120915253	-	ENSMUST00000188320.1,ENSMUSG00000100146.1	1700020M21Rik	ENSMUSG00000100146.1	ENSMUST00000188320.1	lincRNA	chr9:120913774-120915252
chr9	120933688	120933848	+	G-rich	Low_complexity	Low_complexity	chr9	120933817	120933819	+	ENSMUST00000145093.1,ENSMUSG00000006932.17	Ctnnb1	ENSMUSG00000006932.17	ENSMUST00000145093.1	protein_coding	chr9:120933818-120951293
chr9	121242334	121242549	+	7SK	RNA	RNA	chr9	121242341	121242343	+	ENSMUST00000122757.1,ENSMUSG00000084706.1	Gm22987	ENSMUSG00000084706.1	ENSMUST00000122757.1	misc_RNA	chr9:121242342-121242587
chr9	121297430	121297538	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	121297501	121297503	+	ENSMUST00000211301.1,ENSMUSG00000032536.11	Trak1	ENSMUSG00000032536.11	ENSMUST00000211301.1	protein_coding	chr9:121297502-121473617
chr9	121297430	121297538	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	121297511	121297513	+	ENSMUST00000211699.1,ENSMUSG00000032536.11	Trak1	ENSMUSG00000032536.11	ENSMUST00000211699.1	protein_coding	chr9:121297512-121452162
chr9	121297430	121297538	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	121297511	121297513	+	ENSMUST00000210798.2,ENSMUSG00000032536.11	Trak1	ENSMUSG00000032536.11	ENSMUST00000210798.2	protein_coding	chr9:121297512-121474916
chr9	121297430	121297538	+	(CGGGG)n	Simple_repeat	Simple_repeat	chr9	121297533	121297535	+	ENSMUST00000211439.1,ENSMUSG00000032536.11	Trak1	ENSMUSG00000032536.11	ENSMUST00000211439.1	protein_coding	chr9:121297534-121455882
chr9	121319225	121319395	-	B2_Mm1a	SINE	B2	chr9	121319384	121319386	+	ENSMUST00000214451.1,ENSMUSG00000110751.1	C230053D17Rik	ENSMUSG00000110751.1	ENSMUST00000214451.1	TEC	chr9:121319385-121321630
chr9	121523506	121523710	-	B3	SINE	B2	chr9	121523574	121523576	+	ENSMUST00000216555.1,ENSMUSG00000110814.1	Gm38661	ENSMUSG00000110814.1	ENSMUST00000216555.1	lincRNA	chr9:121523575-121530805
chr9	121535454	121536857	-	ORR1C2-int	LTR	ERVL-MaLR	chr9	121536150	121536152	-	ENSMUST00000215630.1,ENSMUSG00000111598.1	Gm47095	ENSMUSG00000111598.1	ENSMUST00000215630.1	lincRNA	chr9:121515665-121536151
chr9	121719393	121719428	+	GC_rich	Low_complexity	Low_complexity	chr9	121719409	121719411	+	ENSMUST00000182179.7,ENSMUSG00000032525.15	Nktr	ENSMUSG00000032525.15	ENSMUST00000182179.7	protein_coding	chr9:121719410-121748193
chr9	121729369	121729536	+	RSINE1	SINE	B4	chr9	121729397	121729399	+	ENSMUST00000182395.1,ENSMUSG00000032525.15	Nktr	ENSMUSG00000032525.15	ENSMUST00000182395.1	protein_coding	chr9:121729398-121731583
chr9	121752506	121752585	-	ID4_	SINE	ID	chr9	121752526	121752528	+	ENSMUST00000182076.1,ENSMUSG00000032525.15	Nktr	ENSMUSG00000032525.15	ENSMUST00000182076.1	protein_coding	chr9:121752527-121754356
chr9	121759985	121760143	+	GC_rich	Low_complexity	Low_complexity	chr9	121760032	121760034	+	ENSMUST00000093772.3,ENSMUSG00000013419.7	Zfp651	ENSMUSG00000013419.7	ENSMUST00000093772.3	protein_coding	chr9:121760033-121771742
chr9	121767015	121767154	+	B1F2	SINE	Alu	chr9	121767081	121767083	+	ENSMUST00000213743.1,ENSMUSG00000013419.7	Zfp651	ENSMUSG00000013419.7	ENSMUST00000213743.1	protein_coding	chr9:121767082-121769054
chr9	121846897	121847006	-	MER2	DNA	TcMar-Tigger	chr9	121846936	121846938	-	ENSMUST00000217162.1,ENSMUSG00000111341.1	Gm47111	ENSMUSG00000111341.1	ENSMUST00000217162.1	TEC	chr9:121843822-121846937
chr9	121936692	121937614	-	RMER21A	LTR	ERV1	chr9	121937222	121937224	+	ENSMUST00000214777.1,ENSMUSG00000043773.5	1700048O20Rik	ENSMUSG00000043773.5	ENSMUST00000214777.1	lincRNA	chr9:121937223-121947016
chr9	122046887	122047224	-	LTR16D2	LTR	ERVL	chr9	122047087	122047089	+	ENSMUST00000214091.1,ENSMUSG00000111785.1	Gm39464	ENSMUSG00000111785.1	ENSMUST00000214091.1	lincRNA	chr9:122047088-122052647
chr9	122117267	122117309	+	GC_rich	Low_complexity	Low_complexity	chr9	122117282	122117284	+	ENSMUST00000146832.7,ENSMUSG00000038145.17	Snrk	ENSMUSG00000038145.17	ENSMUST00000146832.7	protein_coding	chr9:122117283-122137176
chr9	122117267	122117309	+	GC_rich	Low_complexity	Low_complexity	chr9	122117299	122117301	+	ENSMUST00000118886.8,ENSMUSG00000038145.17	Snrk	ENSMUSG00000038145.17	ENSMUST00000118886.8	protein_coding	chr9:122117300-122169702
chr9	122117267	122117309	+	GC_rich	Low_complexity	Low_complexity	chr9	122117302	122117304	+	ENSMUST00000120173.8,ENSMUSG00000038145.17	Snrk	ENSMUSG00000038145.17	ENSMUST00000120173.8	protein_coding	chr9:122117303-122169702
chr9	122117267	122117309	+	GC_rich	Low_complexity	Low_complexity	chr9	122117303	122117305	+	ENSMUST00000217631.1,ENSMUSG00000038145.17	Snrk	ENSMUSG00000038145.17	ENSMUST00000217631.1	protein_coding	chr9:122117304-122163951
chr9	122118941	122119160	-	URR1B	DNA	hAT-Charlie	chr9	122119144	122119146	+	ENSMUST00000217153.1,ENSMUSG00000111003.1	Gm47122	ENSMUSG00000111003.1	ENSMUST00000217153.1	TEC	chr9:122119145-122119495
chr9	122126901	122127813	-	RMER17B2	LTR	ERVK	chr9	122127293	122127295	+	ENSMUST00000217287.1,ENSMUSG00000111605.1	4632418H02Rik	ENSMUSG00000111605.1	ENSMUST00000217287.1	TEC	chr9:122127294-122130014
chr9	122142414	122142524	+	PB1D10	SINE	Alu	chr9	122142448	122142450	+	ENSMUST00000213905.1,ENSMUSG00000111434.1	Gm47121	ENSMUSG00000111434.1	ENSMUST00000213905.1	sense_intronic	chr9:122142449-122143708
chr9	122295572	122295960	+	MTD	LTR	ERVL-MaLR	chr9	122295910	122295912	+	ENSMUST00000214412.1,ENSMUSG00000111268.1	Gm47126	ENSMUSG00000111268.1	ENSMUST00000214412.1	bidirectional_promoter_lncRNA	chr9:122295911-122304879
chr9	122310761	122311020	-	MLT1F1	LTR	ERVL-MaLR	chr9	122310927	122310929	-	ENSMUST00000180685.1,ENSMUSG00000097572.2	Gm26797	ENSMUSG00000097572.2	ENSMUST00000180685.1	lincRNA	chr9:122306130-122310928
chr9	122351706	122351731	+	GC_rich	Low_complexity	Low_complexity	chr9	122351729	122351731	+	ENSMUST00000035128.10,ENSMUSG00000032540.16	Abhd5	ENSMUSG00000032540.16	ENSMUST00000035128.10	protein_coding	chr9:122351730-122379825
chr9	122351706	122351731	+	GC_rich	Low_complexity	Low_complexity	chr9	122351729	122351731	+	ENSMUST00000111497.4,ENSMUSG00000032540.16	Abhd5	ENSMUSG00000032540.16	ENSMUST00000111497.4	protein_coding	chr9:122351730-122381524
chr9	122438113	122438375	+	RLTR10B	LTR	ERVK	chr9	122438164	122438166	-	ENSMUST00000214817.1,ENSMUSG00000111146.1	Gm35454	ENSMUSG00000111146.1	ENSMUST00000214817.1	lincRNA	chr9:122435818-122438165
chr9	122438113	122438375	+	RLTR10B	LTR	ERVK	chr9	122438133	122438135	-	ENSMUST00000213143.1,ENSMUSG00000111146.1	Gm35454	ENSMUSG00000111146.1	ENSMUST00000213143.1	lincRNA	chr9:122436112-122438134
chr9	122683052	122683216	+	(CACCC)n	Simple_repeat	Simple_repeat	chr9	122683054	122683056	+	ENSMUST00000216314.1,ENSMUSG00000111837.1	Gm47135	ENSMUSG00000111837.1	ENSMUST00000216314.1	transcribed_unprocessed_pseudogene	chr9:122683055-122683307
chr9	122689543	122689745	+	B4	SINE	B4	chr9	122689628	122689630	+	ENSMUST00000215101.1,ENSMUSG00000111068.1	Gm35501	ENSMUSG00000111068.1	ENSMUST00000215101.1	lincRNA	chr9:122689629-122693642
chr9	122812564	122812803	+	7SK	RNA	RNA	chr9	122812563	122812565	+	ENSMUST00000157461.1,ENSMUSG00000088086.1	Gm25341	ENSMUSG00000088086.1	ENSMUST00000157461.1	misc_RNA	chr9:122812564-122812831
chr9	122855106	122855647	+	RLTR6B_Mm	LTR	ERV1	chr9	122855379	122855381	-	ENSMUST00000216243.1,ENSMUSG00000047036.8	Zfp445	ENSMUSG00000047036.8	ENSMUST00000216243.1	protein_coding	chr9:122853599-122855380
chr9	122935267	122936133	-	MYSERV-int	LTR	ERVK	chr9	122935811	122935813	+	ENSMUST00000217053.1,ENSMUSG00000111163.1	Gm46136	ENSMUSG00000111163.1	ENSMUST00000217053.1	transcribed_unprocessed_pseudogene	chr9:122935812-122942819
chr9	122990445	122990553	-	B1_Mus2	SINE	Alu	chr9	122990506	122990508	+	ENSMUST00000216491.1,ENSMUSG00000036768.6	Kif15	ENSMUSG00000036768.6	ENSMUST00000216491.1	protein_coding	chr9:122990507-122992757
chr9	123317821	123318177	+	RLTR9A2	LTR	ERVK	chr9	123317997	123317999	-	ENSMUST00000213851.1,ENSMUSG00000058492.5	Scp2-ps2	ENSMUSG00000058492.5	ENSMUST00000213851.1	transcribed_unprocessed_pseudogene	chr9:123307201-123317998
chr9	123478672	123478714	+	GC_rich	Low_complexity	Low_complexity	chr9	123478705	123478707	+	ENSMUST00000026269.3,ENSMUSG00000025239.3	Limd1	ENSMUSG00000025239.3	ENSMUST00000026269.3	protein_coding	chr9:123478706-123521552
chr9	123646853	123646987	+	B1_Mus1	SINE	Alu	chr9	123646986	123646988	-	ENSMUST00000216052.1,ENSMUSG00000111340.1	Gm47171	ENSMUSG00000111340.1	ENSMUST00000216052.1	TEC	chr9:123644194-123646987
chr9	124126632	124126724	-	B1F1	SINE	Alu	chr9	124126683	124126685	+	ENSMUST00000171579.2,ENSMUSG00000079227.10	Ccr5	ENSMUSG00000079227.10	ENSMUST00000171579.2	protein_coding	chr9:124126684-124130250
chr9	124493676	124493814	-	MMSAT4	Satellite	Satellite	chr9	124493792	124493794	-	ENSMUST00000178787.1,ENSMUSG00000096734.1	Gm21836	ENSMUSG00000096734.1	ENSMUST00000178787.1	protein_coding	chr9:124493731-124493793
chr9	124493755	124493928	-	MurSatRep1	Unknown	Unknown	chr9	124493792	124493794	-	ENSMUST00000178787.1,ENSMUSG00000096734.1	Gm21836	ENSMUSG00000096734.1	ENSMUST00000178787.1	protein_coding	chr9:124493731-124493793
chrM	2676	2750	+	tRNA-Leu-TTA(m)	tRNA	tRNA	chrM	2675	2677	+	ENSMUST00000082391.1,ENSMUSG00000064340.1	mt-Tl1	ENSMUSG00000064340.1	ENSMUST00000082391.1	Mt_tRNA	chrM:2676-2750
chrM	3771	3842	-	tRNA-Gln-CAA_	tRNA	tRNA	chrM	3841	3843	-	ENSMUST00000082394.1,ENSMUSG00000064343.1	mt-Tq	ENSMUSG00000064343.1	ENSMUST00000082394.1	Mt_tRNA	chrM:3772-3842
chrM	6869	6938	-	tRNA-Ser-TCA(m)	tRNA	tRNA	chrM	6937	6939	-	ENSMUST00000082403.1,ENSMUSG00000064352.1	mt-Ts1	ENSMUSG00000064352.1	ENSMUST00000082403.1	Mt_tRNA	chrM:6870-6938
chrX	5610860	5611865	-	L1VL4	LINE	L1	chrX	5610866	5610868	-	ENSMUST00000121970.1,ENSMUSG00000082326.1	Gm14366	ENSMUSG00000082326.1	ENSMUST00000121970.1	processed_pseudogene	chrX:5608572-5610867
chrX	6047447	6047479	+	(CGG)n	Simple_repeat	Simple_repeat	chrX	6047452	6047454	+	ENSMUST00000103007.3,ENSMUSG00000073295.4	Nudt11	ENSMUSG00000073295.4	ENSMUST00000103007.3	protein_coding	chrX:6047453-6055110
chrX	6106890	6107010	+	5S	rRNA	rRNA	chrX	6106890	6106892	+	ENSMUST00000101968.1,ENSMUSG00000075918.1	n-R5s2	ENSMUSG00000075918.1	ENSMUST00000101968.1	rRNA	chrX:6106891-6107009
chrX	6779044	6779341	+	(CCCGAA)n	Simple_repeat	Simple_repeat	chrX	6779305	6779307	+	ENSMUST00000067410.13,ENSMUSG00000062393.13	Dgkk	ENSMUSG00000062393.13	ENSMUST00000067410.13	protein_coding	chrX:6779306-6948362
chrX	6779279	6779457	+	(CCCCAG)n	Simple_repeat	Simple_repeat	chrX	6779305	6779307	+	ENSMUST00000067410.13,ENSMUSG00000062393.13	Dgkk	ENSMUSG00000062393.13	ENSMUST00000067410.13	protein_coding	chrX:6779306-6948362
chrX	7375762	7375900	+	CT-rich	Low_complexity	Low_complexity	chrX	7375825	7375827	-	ENSMUST00000178293.7,ENSMUSG00000046269.16	Usp27x	ENSMUSG00000046269.16	ENSMUST00000178293.7	protein_coding	chrX:7371276-7375826
chrX	7375762	7375900	+	CT-rich	Low_complexity	Low_complexity	chrX	7375825	7375827	-	ENSMUST00000191497.1,ENSMUSG00000046269.16	Usp27x	ENSMUSG00000046269.16	ENSMUST00000191497.1	protein_coding	chrX:7371276-7375826
chrX	7375762	7375900	+	CT-rich	Low_complexity	Low_complexity	chrX	7375829	7375831	-	ENSMUST00000115744.1,ENSMUSG00000046269.16	Usp27x	ENSMUSG00000046269.16	ENSMUST00000115744.1	protein_coding	chrX:7372591-7375830
chrX	7536122	7536454	+	MT2B1	LTR	ERVL	chrX	7536132	7536134	-	ENSMUST00000120494.1,ENSMUSG00000084150.1	Gm14395	ENSMUSG00000084150.1	ENSMUST00000120494.1	processed_pseudogene	chrX:7535571-7536133
chrX	7547453	7547549	-	PB1D7	SINE	Alu	chrX	7547479	7547481	-	ENSMUST00000157852.1,ENSMUSG00000088477.1	Gm23082	ENSMUSG00000088477.1	ENSMUST00000157852.1	snoRNA	chrX:7547348-7547480
chrX	7574250	7574289	+	(CGG)n	Simple_repeat	Simple_repeat	chrX	7574282	7574284	-	ENSMUST00000150787.7,ENSMUSG00000039556.16	Ppp1r3f	ENSMUSG00000039556.16	ENSMUST00000150787.7	protein_coding	chrX:7557296-7574283
chrX	7638629	7638657	+	GC_rich	Low_complexity	Low_complexity	chrX	7638637	7638639	+	ENSMUST00000149795.7,ENSMUSG00000031144.15	Syp	ENSMUSG00000031144.15	ENSMUST00000149795.7	protein_coding	chrX:7638638-7647369
chrX	7643813	7643934	-	L2a	LINE	L2	chrX	7643908	7643910	+	ENSMUST00000134355.1,ENSMUSG00000031144.15	Syp	ENSMUSG00000031144.15	ENSMUST00000134355.1	protein_coding	chrX:7643909-7645033
chrX	7662696	7662894	-	B2_Mm2	SINE	B2	chrX	7662762	7662764	+	ENSMUST00000123172.2,ENSMUSG00000031145.15	Prickle3	ENSMUSG00000031145.15	ENSMUST00000123172.2	protein_coding	chrX:7662763-7667953
chrX	7681236	7681483	+	L1M5	LINE	L1	chrX	7681250	7681252	-	ENSMUST00000130287.1,ENSMUSG00000031147.8	Magix	ENSMUSG00000031147.8	ENSMUST00000130287.1	protein_coding	chrX:7673164-7681251
chrX	7764643	7764679	+	(TTTG)n	Simple_repeat	Simple_repeat	chrX	7764651	7764653	+	ENSMUST00000126694.1,ENSMUSG00000000134.17	Tfe3	ENSMUSG00000000134.17	ENSMUST00000126694.1	protein_coding	chrX:7764652-7775197
chrX	7798337	7798526	+	B2_Mm2	SINE	B2	chrX	7798446	7798448	+	ENSMUST00000135622.1,ENSMUSG00000031153.16	Gripap1	ENSMUSG00000031153.16	ENSMUST00000135622.1	protein_coding	chrX:7798447-7810848
chrX	7855608	7855754	-	B1_Mus1	SINE	Alu	chrX	7855726	7855728	+	ENSMUST00000148841.1,ENSMUSG00000031154.15	Otud5	ENSMUSG00000031154.15	ENSMUST00000148841.1	protein_coding	chrX:7855727-7867565
chrX	7909530	7909675	-	B1_Mus1	SINE	Alu	chrX	7909541	7909543	+	ENSMUST00000086274.2,ENSMUSG00000073290.1	Gm10490	ENSMUSG00000073290.1	ENSMUST00000086274.2	protein_coding	chrX:7909542-7909927
chrX	7934443	7934512	+	B1_Mm	SINE	Alu	chrX	7934484	7934486	-	ENSMUST00000153788.1,ENSMUSG00000031161.15	Hdac6	ENSMUSG00000031161.15	ENSMUST00000153788.1	protein_coding	chrX:7931555-7934485
chrX	7967863	7967934	+	C-rich	Low_complexity	Low_complexity	chrX	7967909	7967911	-	ENSMUST00000033502.13,ENSMUSG00000031162.14	Gata1	ENSMUSG00000031162.14	ENSMUST00000033502.13	protein_coding	chrX:7959260-7967910
chrX	8048745	8049685	+	RMER19B	LTR	ERVK	chrX	8049171	8049173	+	ENSMUST00000149438.1,ENSMUSG00000087193.7	Gm14820	ENSMUSG00000087193.7	ENSMUST00000149438.1	antisense	chrX:8049172-8059824
chrX	8048745	8049685	+	RMER19B	LTR	ERVK	chrX	8049247	8049249	+	ENSMUST00000126286.7,ENSMUSG00000087193.7	Gm14820	ENSMUSG00000087193.7	ENSMUST00000126286.7	antisense	chrX:8049248-8072959
chrX	8048745	8049685	+	RMER19B	LTR	ERVK	chrX	8049327	8049329	+	ENSMUST00000153013.7,ENSMUSG00000087193.7	Gm14820	ENSMUSG00000087193.7	ENSMUST00000153013.7	antisense	chrX:8049328-8074619
chrX	8051544	8051697	+	ORR1B1	LTR	ERVL-MaLR	chrX	8051590	8051592	+	ENSMUST00000188632.1,ENSMUSG00000087193.7	Gm14820	ENSMUSG00000087193.7	ENSMUST00000188632.1	antisense	chrX:8051591-8072956
chrX	8074309	8074403	+	GC_rich	Low_complexity	Low_complexity	chrX	8074312	8074314	-	ENSMUST00000127617.1,ENSMUSG00000039231.18	Suv39h1	ENSMUSG00000039231.18	ENSMUST00000127617.1	protein_coding	chrX:8070429-8074313
chrX	8187146	8187354	+	ID_B1	SINE	B4	chrX	8187173	8187175	-	ENSMUST00000140011.1,ENSMUSG00000031168.14	Ebp	ENSMUSG00000031168.14	ENSMUST00000140011.1	protein_coding	chrX:8185331-8187174
chrX	8271619	8271701	+	(TC)n	Simple_repeat	Simple_repeat	chrX	8271641	8271643	+	ENSMUST00000115590.1,ENSMUSG00000031170.14	Slc38a5	ENSMUSG00000031170.14	ENSMUST00000115590.1	protein_coding	chrX:8271642-8280174
chrX	9256846	9256926	-	ID2	SINE	ID	chrX	9256898	9256900	-	ENSMUST00000115553.2,ENSMUSG00000079694.2	Gm14862	ENSMUSG00000079694.2	ENSMUST00000115553.2	protein_coding	chrX:9250928-9256899
chrX	9451432	9451535	+	PB1D7	SINE	Alu	chrX	9451532	9451534	-	ENSMUST00000154503.1,ENSMUSG00000015340.10	Cybb	ENSMUSG00000015340.10	ENSMUST00000154503.1	protein_coding	chrX:9449381-9451533
chrX	9487085	9487834	-	ETnERV2-int	LTR	ERVK	chrX	9487770	9487772	-	ENSMUST00000170885.1,ENSMUSG00000015340.10	Cybb	ENSMUSG00000015340.10	ENSMUST00000170885.1	protein_coding	chrX:9457018-9487771
chrX	11850483	11850589	+	U6	snRNA	snRNA	chrX	11850483	11850485	+	ENSMUST00000083891.1,ENSMUSG00000065825.1	Gm26314	ENSMUSG00000065825.1	ENSMUST00000083891.1	snRNA	chrX:11850484-11850590
chrX	12870358	12870472	-	RSINE1	SINE	B4	chrX	12870361	12870363	-	ENSMUST00000104666.1,ENSMUSG00000077858.1	Gm25063	ENSMUSG00000077858.1	ENSMUST00000104666.1	miRNA	chrX:12870269-12870362
chrX	13041100	13042518	-	L1MDa	LINE	L1	chrX	13042014	13042016	+	ENSMUST00000127521.1,ENSMUSG00000087424.1	5730405O15Rik	ENSMUSG00000087424.1	ENSMUST00000127521.1	processed_transcript	chrX:13042015-13045210
chrX	13041100	13042518	-	L1MDa	LINE	L1	chrX	13042050	13042052	+	ENSMUST00000130099.1,ENSMUSG00000087424.1	5730405O15Rik	ENSMUSG00000087424.1	ENSMUST00000130099.1	processed_transcript	chrX:13042051-13045297
chrX	13129305	13129496	-	B2_Mm1a	SINE	B2	chrX	13129326	13129328	+	ENSMUST00000124097.1,ENSMUSG00000031010.17	Usp9x	ENSMUSG00000031010.17	ENSMUST00000124097.1	protein_coding	chrX:13129327-13133782
chrX	13215802	13215914	+	B1_Mus2	SINE	Alu	chrX	13215808	13215810	-	ENSMUST00000083879.1,ENSMUSG00000065813.1	n-R5s3	ENSMUSG00000065813.1	ENSMUST00000083879.1	rRNA	chrX:13215698-13215809
chrX	13652777	13653652	+	Lx5c	LINE	L1	chrX	13653380	13653382	+	ENSMUST00000175476.1,ENSMUSG00000093217.1	Gm25246	ENSMUSG00000093217.1	ENSMUST00000175476.1	miRNA	chrX:13653381-13653449
chrX	13851324	13851545	+	LTR16A2	LTR	ERVL	chrX	13851366	13851368	-	ENSMUST00000132240.1,ENSMUSG00000031012.17	Cask	ENSMUSG00000031012.17	ENSMUST00000132240.1	protein_coding	chrX:13714731-13851367
chrX	14315404	14315591	-	U2	snRNA	snRNA	chrX	14315590	14315592	-	ENSMUST00000082838.1,ENSMUSG00000064772.1	Gm25202	ENSMUSG00000064772.1	ENSMUST00000082838.1	snRNA	chrX:14315401-14315591
chrX	14796607	14796795	+	RMER16_Mm	LTR	ERVK	chrX	14796734	14796736	+	ENSMUST00000145383.1,ENSMUSG00000084907.1	Gm14505	ENSMUSG00000084907.1	ENSMUST00000145383.1	lincRNA	chrX:14796735-14839980
chrX	15685284	15685391	-	U6	snRNA	snRNA	chrX	15685390	15685392	-	ENSMUST00000093745.1,ENSMUSG00000070258.1	Gm25207	ENSMUSG00000070258.1	ENSMUST00000093745.1	snRNA	chrX:15685285-15685391
chrX	15685391	15686173	-	L1MD3	LINE	L1	chrX	15685390	15685392	-	ENSMUST00000093745.1,ENSMUSG00000070258.1	Gm25207	ENSMUSG00000070258.1	ENSMUST00000093745.1	snRNA	chrX:15685285-15685391
chrX	15707730	15708135	+	MTA_Mm	LTR	ERVL-MaLR	chrX	15707781	15707783	+	ENSMUST00000175273.1,ENSMUSG00000093014.1	Gm22464	ENSMUSG00000093014.1	ENSMUST00000175273.1	miRNA	chrX:15707782-15707845
chrX	15896665	15896769	-	U6	snRNA	snRNA	chrX	15896768	15896770	-	ENSMUST00000093728.1,ENSMUSG00000070240.1	Gm23516	ENSMUSG00000070240.1	ENSMUST00000093728.1	snRNA	chrX:15896663-15896769
chrX	15896769	15896968	+	L1_Mus2	LINE	L1	chrX	15896768	15896770	-	ENSMUST00000093728.1,ENSMUSG00000070240.1	Gm23516	ENSMUSG00000070240.1	ENSMUST00000093728.1	snRNA	chrX:15896663-15896769
chrX	15933151	15933644	-	MT2_Mm	LTR	ERVL	chrX	15933343	15933345	-	ENSMUST00000151575.7,ENSMUSG00000086048.7	Drr1	ENSMUSG00000086048.7	ENSMUST00000151575.7	lincRNA	chrX:15922304-15933344
chrX	15939056	15939549	-	MT2_Mm	LTR	ERVL	chrX	15939248	15939250	-	ENSMUST00000133333.1,ENSMUSG00000086048.7	Drr1	ENSMUSG00000086048.7	ENSMUST00000133333.1	lincRNA	chrX:15922304-15939249
chrX	16275881	16276033	-	MT2A	LTR	ERVL	chrX	16275906	16275908	-	ENSMUST00000119258.1,ENSMUSG00000081312.1	Gm14520	ENSMUSG00000081312.1	ENSMUST00000119258.1	processed_pseudogene	chrX:16275521-16275907
chrX	17325314	17325418	+	U6	snRNA	snRNA	chrX	17325314	17325316	+	ENSMUST00000083308.1,ENSMUSG00000065242.1	Gm22294	ENSMUSG00000065242.1	ENSMUST00000083308.1	snRNA	chrX:17325315-17325418
chrX	18274507	18274694	-	B2_Mm2	SINE	B2	chrX	18274511	18274513	+	ENSMUST00000155161.1,ENSMUSG00000037369.17	Kdm6a	ENSMUSG00000037369.17	ENSMUST00000155161.1	protein_coding	chrX:18274512-18278260
chrX	18323442	18323562	-	5S	rRNA	rRNA	chrX	18323561	18323563	-	ENSMUST00000083134.1,ENSMUSG00000065068.1	n-R5s5	ENSMUSG00000065068.1	ENSMUST00000083134.1	rRNA	chrX:18323444-18323562
chrX	19355000	19355103	+	U6	snRNA	snRNA	chrX	19355000	19355002	+	ENSMUST00000104089.1,ENSMUSG00000077277.1	Gm22783	ENSMUSG00000077277.1	ENSMUST00000104089.1	snRNA	chrX:19355001-19355107
chrX	19762667	19762774	-	U6	snRNA	snRNA	chrX	19762773	19762775	-	ENSMUST00000083157.1,ENSMUSG00000065091.1	Gm23678	ENSMUSG00000065091.1	ENSMUST00000083157.1	snRNA	chrX:19762668-19762774
chrX	20797637	20798139	-	Lx2	LINE	L1	chrX	20797813	20797815	+	ENSMUST00000136451.7,ENSMUSG00000001127.12	Araf	ENSMUSG00000001127.12	ENSMUST00000136451.7	protein_coding	chrX:20797814-20860497
chrX	20823803	20823958	+	L1MD2	LINE	L1	chrX	20823813	20823815	-	ENSMUST00000175097.1,ENSMUSG00000092838.1	Gm24824	ENSMUSG00000092838.1	ENSMUST00000175097.1	miRNA	chrX:20823737-20823814
chrX	20851129	20851328	-	B3	SINE	B2	chrX	20851129	20851131	+	ENSMUST00000123219.1,ENSMUSG00000001127.12	Araf	ENSMUSG00000001127.12	ENSMUST00000123219.1	protein_coding	chrX:20851130-20852214
chrX	21751364	21751460	+	L1M3	LINE	L1	chrX	21751378	21751380	+	ENSMUST00000188966.1,ENSMUSG00000101776.1	Gm28268	ENSMUSG00000101776.1	ENSMUST00000188966.1	lincRNA	chrX:21751379-21761733
chrX	21901736	21901838	-	U6	snRNA	snRNA	chrX	21901837	21901839	-	ENSMUST00000083140.1,ENSMUSG00000065074.1	Gm24535	ENSMUSG00000065074.1	ENSMUST00000083140.1	snRNA	chrX:21901732-21901838
chrX	21901838	21905440	-	L1_Mur1	LINE	L1	chrX	21901837	21901839	-	ENSMUST00000083140.1,ENSMUSG00000065074.1	Gm24535	ENSMUSG00000065074.1	ENSMUST00000083140.1	snRNA	chrX:21901732-21901838
chrX	22861935	22862040	+	U6	snRNA	snRNA	chrX	22861935	22861937	+	ENSMUST00000082725.1,ENSMUSG00000064659.1	Gm26131	ENSMUSG00000064659.1	ENSMUST00000082725.1	snRNA	chrX:22861936-22862045
chrX	23776557	23776911	+	ORR1A0	LTR	ERVL-MaLR	chrX	23776818	23776820	+	ENSMUST00000135445.1,ENSMUSG00000036769.14	Wdr44	ENSMUSG00000036769.14	ENSMUST00000135445.1	protein_coding	chrX:23776819-23781568
chrX	23892582	23892854	+	MTE2b	LTR	ERVL-MaLR	chrX	23892783	23892785	+	ENSMUST00000163718.2,ENSMUSG00000068113.6	Gm4907	ENSMUSG00000068113.6	ENSMUST00000163718.2	protein_coding	chrX:23892784-23907497
chrX	23982117	23982497	+	MTA_Mm	LTR	ERVL-MaLR	chrX	23982184	23982186	+	ENSMUST00000175283.1,ENSMUSG00000093024.1	Gm25299	ENSMUSG00000093024.1	ENSMUST00000175283.1	miRNA	chrX:23982185-23982286
chrX	24616636	24622435	+	L1Md_A	LINE	L1	chrX	24617116	24617118	-	ENSMUST00000185004.1,ENSMUSG00000098585.1	Gm27910	ENSMUSG00000098585.1	ENSMUST00000185004.1	miRNA	chrX:24617011-24617117
chrX	24616636	24622435	+	L1Md_A	LINE	L1	chrX	24617317	24617319	-	ENSMUST00000184242.1,ENSMUSG00000098899.1	Gm27839	ENSMUSG00000098899.1	ENSMUST00000184242.1	miRNA	chrX:24617213-24617318
chrX	25679240	25684442	+	L1Md_A	LINE	L1	chrX	25679519	25679521	-	ENSMUST00000185017.1,ENSMUSG00000098849.1	Gm27892	ENSMUSG00000098849.1	ENSMUST00000185017.1	miRNA	chrX:25679415-25679520
chrX	25954511	25954926	-	BGLII	LTR	ERVK	chrX	25954695	25954697	-	ENSMUST00000136639.1,ENSMUSG00000086959.1	E330010L02Rik	ENSMUSG00000086959.1	ENSMUST00000136639.1	lincRNA	chrX:25917944-25954696
chrX	26229967	26230020	+	RLTR20A4	LTR	ERVK	chrX	26229980	26229982	+	ENSMUST00000116848.2,ENSMUSG00000080498.2	Gm26302	ENSMUSG00000080498.2	ENSMUST00000116848.2	miRNA	chrX:26229981-26230066
chrX	26579299	26581911	+	L1Md_T	LINE	L1	chrX	26579981	26579983	-	ENSMUST00000183570.1,ENSMUSG00000099097.1	Gm27341	ENSMUSG00000099097.1	ENSMUST00000183570.1	miRNA	chrX:26579877-26579982
chrX	27658007	27658426	+	BGLII	LTR	ERVK	chrX	27658160	27658162	+	ENSMUST00000128191.7,ENSMUSG00000093817.7	Gm2101	ENSMUSG00000093817.7	ENSMUST00000128191.7	lincRNA	chrX:27658161-27691519
chrX	27658007	27658426	+	BGLII	LTR	ERVK	chrX	27658189	27658191	+	ENSMUST00000137421.7,ENSMUSG00000093817.7	Gm2101	ENSMUSG00000093817.7	ENSMUST00000137421.7	lincRNA	chrX:27658190-27691917
chrX	27658007	27658426	+	BGLII	LTR	ERVK	chrX	27658189	27658191	+	ENSMUST00000133794.7,ENSMUSG00000093817.7	Gm2101	ENSMUSG00000093817.7	ENSMUST00000133794.7	lincRNA	chrX:27658190-27692894
chrX	27658007	27658426	+	BGLII	LTR	ERVK	chrX	27658222	27658224	+	ENSMUST00000156730.7,ENSMUSG00000093817.7	Gm2101	ENSMUSG00000093817.7	ENSMUST00000156730.7	lincRNA	chrX:27658223-27691564
chrX	27658007	27658426	+	BGLII	LTR	ERVK	chrX	27658245	27658247	+	ENSMUST00000131997.1,ENSMUSG00000093817.7	Gm2101	ENSMUSG00000093817.7	ENSMUST00000131997.1	lincRNA	chrX:27658246-27691624
chrX	28004897	28005316	+	BGLII	LTR	ERVK	chrX	28005049	28005051	+	ENSMUST00000142032.7,ENSMUSG00000085534.7	Gm2117	ENSMUSG00000085534.7	ENSMUST00000142032.7	lincRNA	chrX:28005050-28046024
chrX	28004897	28005316	+	BGLII	LTR	ERVK	chrX	28005079	28005081	+	ENSMUST00000147993.7,ENSMUSG00000085534.7	Gm2117	ENSMUSG00000085534.7	ENSMUST00000147993.7	lincRNA	chrX:28005080-28047399
chrX	28004897	28005316	+	BGLII	LTR	ERVK	chrX	28005112	28005114	+	ENSMUST00000151687.7,ENSMUSG00000085534.7	Gm2117	ENSMUSG00000085534.7	ENSMUST00000151687.7	lincRNA	chrX:28005113-28046069
chrX	28004897	28005316	+	BGLII	LTR	ERVK	chrX	28005135	28005137	+	ENSMUST00000130478.1,ENSMUSG00000085534.7	Gm2117	ENSMUSG00000085534.7	ENSMUST00000130478.1	lincRNA	chrX:28005136-28046129
chrX	28665996	28666415	+	BGLII	LTR	ERVK	chrX	28666149	28666151	+	ENSMUST00000155337.7,ENSMUSG00000096911.7	Gm2165	ENSMUSG00000096911.7	ENSMUST00000155337.7	lincRNA	chrX:28666150-28699504
chrX	28665996	28666415	+	BGLII	LTR	ERVK	chrX	28666178	28666180	+	ENSMUST00000124609.7,ENSMUSG00000096911.7	Gm2165	ENSMUSG00000096911.7	ENSMUST00000124609.7	lincRNA	chrX:28666179-28699902
chrX	28665996	28666415	+	BGLII	LTR	ERVK	chrX	28666178	28666180	+	ENSMUST00000129963.7,ENSMUSG00000096911.7	Gm2165	ENSMUSG00000096911.7	ENSMUST00000129963.7	lincRNA	chrX:28666179-28700879
chrX	28665996	28666415	+	BGLII	LTR	ERVK	chrX	28666211	28666213	+	ENSMUST00000153493.7,ENSMUSG00000096911.7	Gm2165	ENSMUSG00000096911.7	ENSMUST00000153493.7	lincRNA	chrX:28666212-28699549
chrX	28665996	28666415	+	BGLII	LTR	ERVK	chrX	28666234	28666236	+	ENSMUST00000137981.1,ENSMUSG00000096911.7	Gm2165	ENSMUSG00000096911.7	ENSMUST00000137981.1	lincRNA	chrX:28666235-28699609
chrX	29012755	29013174	+	BGLII	LTR	ERVK	chrX	29012993	29012995	+	ENSMUST00000124814.1,ENSMUSG00000087462.1	Gm2200	ENSMUSG00000087462.1	ENSMUST00000124814.1	lincRNA	chrX:29012994-29046381
chrX	29151397	29157184	+	L1Md_A	LINE	L1	chrX	29151824	29151826	-	ENSMUST00000181367.1,ENSMUSG00000097037.1	Gm26818	ENSMUSG00000097037.1	ENSMUST00000181367.1	lincRNA	chrX:29150251-29151825
chrX	29915765	29916184	-	BGLII	LTR	ERVK	chrX	29916001	29916003	-	ENSMUST00000126712.7,ENSMUSG00000085489.7	Gm3669	ENSMUSG00000085489.7	ENSMUST00000126712.7	lincRNA	chrX:29881290-29916002
chrX	29915765	29916184	-	BGLII	LTR	ERVK	chrX	29916001	29916003	-	ENSMUST00000144018.7,ENSMUSG00000085489.7	Gm3669	ENSMUSG00000085489.7	ENSMUST00000144018.7	lincRNA	chrX:29882267-29916002
chrX	29915765	29916184	-	BGLII	LTR	ERVK	chrX	29915945	29915947	-	ENSMUST00000140946.7,ENSMUSG00000085489.7	Gm3669	ENSMUSG00000085489.7	ENSMUST00000140946.7	lincRNA	chrX:29882560-29915946
chrX	29915765	29916184	-	BGLII	LTR	ERVK	chrX	29915968	29915970	-	ENSMUST00000133259.7,ENSMUSG00000085489.7	Gm3669	ENSMUSG00000085489.7	ENSMUST00000133259.7	lincRNA	chrX:29882620-29915969
chrX	29915765	29916184	-	BGLII	LTR	ERVK	chrX	29916030	29916032	-	ENSMUST00000127852.1,ENSMUSG00000085489.7	Gm3669	ENSMUSG00000085489.7	ENSMUST00000127852.1	lincRNA	chrX:29882665-29916031
chrX	30037639	30038060	+	BGLII	LTR	ERVK	chrX	30037836	30037838	+	ENSMUST00000140614.1,ENSMUSG00000085060.1	E330016L19Rik	ENSMUSG00000085060.1	ENSMUST00000140614.1	lincRNA	chrX:30037837-30087879
chrX	30373353	30373772	+	BGLII	LTR	ERVK	chrX	30373538	30373540	+	ENSMUST00000156744.1,ENSMUSG00000085989.1	Gm7437	ENSMUSG00000085989.1	ENSMUST00000156744.1	lincRNA	chrX:30373539-30422500
chrX	30621061	30621480	-	BGLII	LTR	ERVK	chrX	30621274	30621276	-	ENSMUST00000139112.7,ENSMUSG00000085325.7	Gm14974	ENSMUSG00000085325.7	ENSMUST00000139112.7	lincRNA	chrX:30587056-30621275
chrX	30621061	30621480	-	BGLII	LTR	ERVK	chrX	30621264	30621266	-	ENSMUST00000150003.1,ENSMUSG00000085325.7	Gm14974	ENSMUSG00000085325.7	ENSMUST00000150003.1	lincRNA	chrX:30587438-30621265
chrX	31347750	31347898	+	RLTR6-int	LTR	ERV1	chrX	31347821	31347823	-	ENSMUST00000126961.1,ENSMUSG00000086580.1	Gm15280	ENSMUSG00000086580.1	ENSMUST00000126961.1	unprocessed_pseudogene	chrX:31347183-31347822
chrX	31351203	31351598	-	MTA_Mm	LTR	ERVL-MaLR	chrX	31351399	31351401	+	ENSMUST00000145953.1,ENSMUSG00000086906.1	Gm15276	ENSMUSG00000086906.1	ENSMUST00000145953.1	unprocessed_pseudogene	chrX:31351400-31351897
chrX	33627843	33628014	-	L1_Mus3	LINE	L1	chrX	33627850	33627852	-	ENSMUST00000155593.1,ENSMUSG00000085756.1	Gm15279	ENSMUSG00000085756.1	ENSMUST00000155593.1	processed_pseudogene	chrX:33627564-33627851
chrX	35008998	35009417	-	BGLII	LTR	ERVK	chrX	35009201	35009203	-	ENSMUST00000146614.7,ENSMUSG00000087491.7	Gm14552	ENSMUSG00000087491.7	ENSMUST00000146614.7	lincRNA	chrX:34974042-35009202
chrX	35008998	35009417	-	BGLII	LTR	ERVK	chrX	35009235	35009237	-	ENSMUST00000126906.7,ENSMUSG00000087491.7	Gm14552	ENSMUSG00000087491.7	ENSMUST00000126906.7	lincRNA	chrX:34974042-35009236
chrX	35008998	35009417	-	BGLII	LTR	ERVK	chrX	35009264	35009266	-	ENSMUST00000144163.1,ENSMUSG00000087491.7	Gm14552	ENSMUSG00000087491.7	ENSMUST00000144163.1	lincRNA	chrX:34974042-35009265
chrX	35128799	35129220	+	BGLII	LTR	ERVK	chrX	35129014	35129016	+	ENSMUST00000149994.1,ENSMUSG00000086757.1	Gm2309	ENSMUSG00000086757.1	ENSMUST00000149994.1	lincRNA	chrX:35129015-35179028
chrX	35348502	35348921	-	BGLII	LTR	ERVK	chrX	35348738	35348740	-	ENSMUST00000126711.1,ENSMUSG00000085000.1	Gm14553	ENSMUSG00000085000.1	ENSMUST00000126711.1	lincRNA	chrX:35294189-35348739
chrX	35974851	35974890	+	(TG)n	Simple_repeat	Simple_repeat	chrX	35974887	35974889	+	ENSMUST00000145757.1,ENSMUSG00000031093.14	Dock11	ENSMUSG00000031093.14	ENSMUST00000145757.1	protein_coding	chrX:35974888-35983839
chrX	36213022	36213125	+	L1_Mur2	LINE	L1	chrX	36213033	36213035	-	ENSMUST00000118672.1,ENSMUSG00000083130.1	Gm14560	ENSMUSG00000083130.1	ENSMUST00000118672.1	processed_pseudogene	chrX:36212660-36213034
chrX	36329209	36329243	+	GC_rich	Low_complexity	Low_complexity	chrX	36329215	36329217	+	ENSMUST00000126147.1,ENSMUSG00000016239.11	Lonrf3	ENSMUSG00000016239.11	ENSMUST00000126147.1	protein_coding	chrX:36329216-36341754
chrX	36363898	36364002	+	U6	snRNA	snRNA	chrX	36363898	36363900	+	ENSMUST00000122667.1,ENSMUSG00000084616.1	Gm25047	ENSMUSG00000084616.1	ENSMUST00000122667.1	snRNA	chrX:36363899-36364002
chrX	36380901	36381305	+	MLT1B	LTR	ERVL-MaLR	chrX	36381252	36381254	-	ENSMUST00000199569.1,ENSMUSG00000104809.1	Gm44485	ENSMUSG00000104809.1	ENSMUST00000199569.1	miRNA	chrX:36381117-36381253
chrX	36409609	36409707	-	U6	snRNA	snRNA	chrX	36409706	36409708	-	ENSMUST00000083097.1,ENSMUSG00000065031.1	Gm22364	ENSMUSG00000065031.1	ENSMUST00000083097.1	snRNA	chrX:36409610-36409707
chrX	36409707	36410337	-	L1MA7	LINE	L1	chrX	36409706	36409708	-	ENSMUST00000083097.1,ENSMUSG00000065031.1	Gm22364	ENSMUSG00000065031.1	ENSMUST00000083097.1	snRNA	chrX:36409610-36409707
chrX	36426480	36426810	+	Lx4A	LINE	L1	chrX	36426679	36426681	-	ENSMUST00000140106.7,ENSMUSG00000091556.8	Gm14569	ENSMUSG00000091556.8	ENSMUST00000140106.7	protein_coding	chrX:36423601-36426680
chrX	36814742	36815167	-	RMER5	LTR	ERV1	chrX	36814770	36814772	+	ENSMUST00000154993.1,ENSMUSG00000084990.1	Gm14549	ENSMUSG00000084990.1	ENSMUST00000154993.1	antisense	chrX:36814771-36817200
chrX	36817185	36817249	+	C-rich	Low_complexity	Low_complexity	chrX	36817184	36817186	-	ENSMUST00000180483.1,ENSMUSG00000097468.1	Mdrl	ENSMUSG00000097468.1	ENSMUST00000180483.1	lincRNA	chrX:36814771-36817185
chrX	36873843	36874010	+	ID_B1	SINE	B4	chrX	36873899	36873901	+	ENSMUST00000201012.1,ENSMUSG00000016308.12	Ube2a	ENSMUSG00000016308.12	ENSMUST00000201012.1	protein_coding	chrX:36873900-36874471
chrX	36910827	36910966	-	RSINE1	SINE	B4	chrX	36910833	36910835	+	ENSMUST00000147429.1,ENSMUSG00000087155.1	Gm15008	ENSMUSG00000087155.1	ENSMUST00000147429.1	antisense	chrX:36910834-36911985
chrX	37072117	37072263	-	B1_Mus2	SINE	Alu	chrX	37072261	37072263	-	ENSMUST00000175318.2,ENSMUSG00000093059.2	Gm24809	ENSMUSG00000093059.2	ENSMUST00000175318.2	misc_RNA	chrX:37071992-37072262
chrX	37221672	37222370	+	RLTR19-int	LTR	ERVK	chrX	37222257	37222259	-	ENSMUST00000115210.1,ENSMUSG00000071773.4	Rhox1	ENSMUSG00000071773.4	ENSMUST00000115210.1	protein_coding	chrX:37213804-37222258
chrX	38110545	38111046	-	RMER15	LTR	ERVL	chrX	38110906	38110908	-	ENSMUST00000096453.11,ENSMUSG00000071766.12	Rhox12	ENSMUSG00000071766.12	ENSMUST00000096453.11	protein_coding	chrX:38104077-38110907
chrX	38110545	38111046	-	RMER15	LTR	ERVL	chrX	38110786	38110788	-	ENSMUST00000183737.2,ENSMUSG00000071766.12	Rhox12	ENSMUSG00000071766.12	ENSMUST00000183737.2	protein_coding	chrX:38105577-38110787
chrX	38210218	38210516	+	RMER13A2	LTR	ERVK	chrX	38210440	38210442	+	ENSMUST00000175053.1,ENSMUSG00000092794.1	Mir3110	ENSMUSG00000092794.1	ENSMUST00000175053.1	miRNA	chrX:38210441-38210520
chrX	38443148	38443168	+	(A)n	Simple_repeat	Simple_repeat	chrX	38443149	38443151	-	ENSMUST00000136817.1,ENSMUSG00000016534.15	Lamp2	ENSMUSG00000016534.15	ENSMUST00000136817.1	protein_coding	chrX:38429882-38443150
chrX	38476337	38476690	+	MT2B2	LTR	ERVL	chrX	38476460	38476462	+	ENSMUST00000130251.1,ENSMUSG00000087390.1	Gm7598	ENSMUSG00000087390.1	ENSMUST00000130251.1	lincRNA	chrX:38476461-38482486
chrX	38737729	38738587	+	RLTR13A1	LTR	ERVK	chrX	38737761	38737763	-	ENSMUST00000140021.1,ENSMUSG00000085635.1	Gm14565	ENSMUSG00000085635.1	ENSMUST00000140021.1	lincRNA	chrX:38705481-38737762
chrX	38751875	38752139	-	Lx5b	LINE	L1	chrX	38752126	38752128	-	ENSMUST00000175137.1,ENSMUSG00000092878.1	Gm25642	ENSMUSG00000092878.1	ENSMUST00000175137.1	miRNA	chrX:38752062-38752127
chrX	39305379	39305482	-	U6	snRNA	snRNA	chrX	39305480	39305482	-	ENSMUST00000082595.1,ENSMUSG00000064529.1	Gm26437	ENSMUSG00000064529.1	ENSMUST00000082595.1	snRNA	chrX:39305377-39305481
chrX	39870138	39870884	-	Lx6	LINE	L1	chrX	39870499	39870501	+	ENSMUST00000144412.1,ENSMUSG00000086157.1	Gm14643	ENSMUSG00000086157.1	ENSMUST00000144412.1	processed_transcript	chrX:39870500-40475561
chrX	39976334	39977270	+	Lx	LINE	L1	chrX	39976370	39976372	-	ENSMUST00000175036.1,ENSMUSG00000092777.1	Gm26194	ENSMUSG00000092777.1	ENSMUST00000175036.1	miRNA	chrX:39976301-39976371
chrX	41401007	41401184	+	(TC)n	Simple_repeat	Simple_repeat	chrX	41401127	41401129	+	ENSMUST00000115103.8,ENSMUSG00000001986.16	Gria3	ENSMUSG00000001986.16	ENSMUST00000115103.8	protein_coding	chrX:41401128-41676585
chrX	41401301	41401368	+	(GA)n	Simple_repeat	Simple_repeat	chrX	41401303	41401305	+	ENSMUST00000076349.11,ENSMUSG00000001986.16	Gria3	ENSMUSG00000001986.16	ENSMUST00000076349.11	protein_coding	chrX:41401304-41678601
chrX	41807033	41807127	+	T-rich	Low_complexity	Low_complexity	chrX	41807049	41807051	-	ENSMUST00000143557.7,ENSMUSG00000037475.15	Thoc2	ENSMUSG00000037475.15	ENSMUST00000143557.7	protein_coding	chrX:41802332-41807050
chrX	41831010	41831719	-	L1Md_T	LINE	L1	chrX	41831071	41831073	-	ENSMUST00000151802.1,ENSMUSG00000037475.15	Thoc2	ENSMUSG00000037475.15	ENSMUST00000151802.1	protein_coding	chrX:41823408-41831072
chrX	41948789	41948956	-	MER5A	DNA	hAT-Charlie	chrX	41948831	41948833	+	ENSMUST00000198566.1,ENSMUSG00000104879.1	Gm44490	ENSMUSG00000104879.1	ENSMUST00000198566.1	miRNA	chrX:41948832-41948958
chrX	42059679	42059759	+	A-rich	Low_complexity	Low_complexity	chrX	42059678	42059680	+	ENSMUST00000141316.7,ENSMUSG00000025860.15	Xiap	ENSMUSG00000025860.15	ENSMUST00000141316.7	protein_coding	chrX:42059679-42072637
chrX	42060275	42060574	+	ORR1A3	LTR	ERVL-MaLR	chrX	42060393	42060395	+	ENSMUST00000224454.1,ENSMUSG00000025860.15	Xiap	ENSMUSG00000025860.15	ENSMUST00000224454.1	protein_coding	chrX:42060394-42094717
chrX	42068734	42068758	+	GC_rich	Low_complexity	Low_complexity	chrX	42068754	42068756	+	ENSMUST00000145065.1,ENSMUSG00000025860.15	Xiap	ENSMUSG00000025860.15	ENSMUST00000145065.1	protein_coding	chrX:42068755-42109656
chrX	42149351	42149468	+	(A)n	Simple_repeat	Simple_repeat	chrX	42149411	42149413	+	ENSMUST00000115072.7,ENSMUSG00000025862.14	Stag2	ENSMUSG00000025862.14	ENSMUST00000115072.7	protein_coding	chrX:42149412-42277175
chrX	43254045	43254229	+	U2	snRNA	snRNA	chrX	43254045	43254047	+	ENSMUST00000083688.1,ENSMUSG00000065622.1	Gm24763	ENSMUSG00000065622.1	ENSMUST00000083688.1	snRNA	chrX:43254046-43254235
chrX	45795360	45795467	-	U6	snRNA	snRNA	chrX	45795466	45795468	-	ENSMUST00000082530.1,ENSMUSG00000064464.1	Gm25078	ENSMUSG00000064464.1	ENSMUST00000082530.1	snRNA	chrX:45795361-45795467
chrX	47381331	47381501	-	Lx5	LINE	L1	chrX	47381333	47381335	-	ENSMUST00000122176.1,ENSMUSG00000083499.1	Gm14609	ENSMUSG00000083499.1	ENSMUST00000122176.1	processed_pseudogene	chrX:47380433-47381334
chrX	47960124	47960356	+	L1Md_F2	LINE	L1	chrX	47960288	47960290	+	ENSMUST00000115013.1,ENSMUSG00000001173.15	Ocrl	ENSMUSG00000001173.15	ENSMUST00000115013.1	protein_coding	chrX:47960289-47965763
chrX	48307042	48307142	+	U6	snRNA	snRNA	chrX	48307042	48307044	+	ENSMUST00000158293.1,ENSMUSG00000088918.1	Gm22612	ENSMUSG00000088918.1	ENSMUST00000158293.1	snRNA	chrX:48307043-48307143
chrX	48486472	48486618	+	B1_Mm	SINE	Alu	chrX	48486517	48486519	-	ENSMUST00000124623.1,ENSMUSG00000036932.14	Aifm1	ENSMUSG00000036932.14	ENSMUST00000124623.1	protein_coding	chrX:48485458-48486518
chrX	48594392	48594467	+	GA-rich	Low_complexity	Low_complexity	chrX	48594451	48594453	-	ENSMUST00000072292.11,ENSMUSG00000036916.13	Zfp280c	ENSMUSG00000036916.13	ENSMUST00000072292.11	protein_coding	chrX:48541625-48594452
chrX	48644240	48644453	-	B3	SINE	B2	chrX	48644339	48644341	+	ENSMUST00000184108.1,ENSMUSG00000098271.1	Gm27828	ENSMUSG00000098271.1	ENSMUST00000184108.1	miRNA	chrX:48644340-48644458
chrX	48890161	48890302	+	B1_Mur2	SINE	Alu	chrX	48890174	48890176	-	ENSMUST00000119619.1,ENSMUSG00000081526.1	Gm7219	ENSMUSG00000081526.1	ENSMUST00000119619.1	processed_pseudogene	chrX:48889879-48890175
chrX	49345097	49345252	-	RSINE1	SINE	B4	chrX	49345236	49345238	-	ENSMUST00000144294.1,ENSMUSG00000087369.1	Gm14696	ENSMUSG00000087369.1	ENSMUST00000144294.1	lincRNA	chrX:49313319-49345237
chrX	49660802	49662542	+	L1Md_F2	LINE	L1	chrX	49660959	49660961	+	ENSMUST00000121891.2,ENSMUSG00000082192.2	Gm14719	ENSMUSG00000082192.2	ENSMUST00000121891.2	processed_pseudogene	chrX:49660960-49661299
chrX	49879298	49879390	+	5S	rRNA	rRNA	chrX	49879306	49879308	+	ENSMUST00000122663.1,ENSMUSG00000084612.1	n-R5s6	ENSMUSG00000084612.1	ENSMUST00000122663.1	rRNA	chrX:49879307-49879394
chrX	50022620	50022836	+	7SK	RNA	RNA	chrX	50022620	50022622	+	ENSMUST00000158592.1,ENSMUSG00000089217.1	Gm23385	ENSMUSG00000089217.1	ENSMUST00000158592.1	misc_RNA	chrX:50022621-50022915
chrX	50405812	50405919	+	U6	snRNA	snRNA	chrX	50405812	50405814	+	ENSMUST00000179904.1,ENSMUSG00000094897.1	Gm22288	ENSMUSG00000094897.1	ENSMUST00000179904.1	snRNA	chrX:50405813-50405919
chrX	52296086	52296205	-	B4A	SINE	B4	chrX	52296180	52296182	+	ENSMUST00000141697.1,ENSMUSG00000086704.1	Gm14582	ENSMUSG00000086704.1	ENSMUST00000141697.1	antisense	chrX:52296181-52333679
chrX	52924368	52924755	+	MTA_Mm	LTR	ERVL-MaLR	chrX	52924568	52924570	+	ENSMUST00000177780.7,ENSMUSG00000025626.16	Phf6	ENSMUSG00000025626.16	ENSMUST00000177780.7	protein_coding	chrX:52924569-52940616
chrX	52924368	52924755	+	MTA_Mm	LTR	ERVL-MaLR	chrX	52924570	52924572	+	ENSMUST00000179014.1,ENSMUSG00000025626.16	Phf6	ENSMUSG00000025626.16	ENSMUST00000179014.1	protein_coding	chrX:52924571-52940635
chrX	53306176	53306386	+	7SK	RNA	RNA	chrX	53306176	53306178	+	ENSMUST00000157350.1,ENSMUSG00000087975.1	Gm23718	ENSMUSG00000087975.1	ENSMUST00000157350.1	misc_RNA	chrX:53306177-53306483
chrX	54118994	54119101	+	U6	snRNA	snRNA	chrX	54118994	54118996	+	ENSMUST00000179774.1,ENSMUSG00000095284.1	Gm22550	ENSMUSG00000095284.1	ENSMUST00000179774.1	snRNA	chrX:54118995-54119101
chrX	54174675	54174783	-	B3	SINE	B2	chrX	54174778	54174780	+	ENSMUST00000120325.1,ENSMUSG00000081477.1	Gm7916	ENSMUSG00000081477.1	ENSMUST00000120325.1	unprocessed_pseudogene	chrX:54174779-54202199
chrX	56070428	56070897	+	MT2_Mm	LTR	ERVL	chrX	56070663	56070665	+	ENSMUST00000116733.1,ENSMUSG00000080383.1	Gm22103	ENSMUSG00000080383.1	ENSMUST00000116733.1	miRNA	chrX:56070664-56070784
chrX	56549485	56549777	+	B4A	SINE	B4	chrX	56549605	56549607	-	ENSMUST00000081133.4,ENSMUSG00000064016.4	Gm648	ENSMUSG00000064016.4	ENSMUST00000081133.4	protein_coding	chrX:56543874-56549606
chrX	56725072	56725216	+	U1	snRNA	snRNA	chrX	56725072	56725074	+	ENSMUST00000157769.1,ENSMUSG00000088394.1	Gm26312	ENSMUSG00000088394.1	ENSMUST00000157769.1	snRNA	chrX:56725073-56725237
chrX	57300728	57300861	+	ID_B1	SINE	B4	chrX	57300858	57300860	-	ENSMUST00000175636.1,ENSMUSG00000031133.12	Arhgef6	ENSMUSG00000031133.12	ENSMUST00000175636.1	protein_coding	chrX:57298512-57300859
chrX	57989472	57989579	+	U6	snRNA	snRNA	chrX	57989472	57989474	+	ENSMUST00000082977.1,ENSMUSG00000093905.1	Gm25023	ENSMUSG00000093905.1	ENSMUST00000082977.1	snRNA	chrX:57989473-57989579
chrX	58030928	58031009	+	C-rich	Low_complexity	Low_complexity	chrX	58030998	58031000	+	ENSMUST00000088631.10,ENSMUSG00000067860.11	Zic3	ENSMUSG00000067860.11	ENSMUST00000088631.10	protein_coding	chrX:58030999-58036559
chrX	58357951	58358058	-	U6	snRNA	snRNA	chrX	58358057	58358059	-	ENSMUST00000082794.1,ENSMUSG00000064728.1	Gm25851	ENSMUSG00000064728.1	ENSMUST00000082794.1	snRNA	chrX:58357952-58358058
chrX	58358058	58358156	+	MLTR14	LTR	ERV1	chrX	58358057	58358059	-	ENSMUST00000082794.1,ENSMUSG00000064728.1	Gm25851	ENSMUSG00000064728.1	ENSMUST00000082794.1	snRNA	chrX:58357952-58358058
chrX	58788416	58795018	-	L1Md_T	LINE	L1	chrX	58794730	58794732	+	ENSMUST00000197168.1,ENSMUSG00000105997.1	Gm44333	ENSMUSG00000105997.1	ENSMUST00000197168.1	miRNA	chrX:58794731-58794837
chrX	59190772	59190865	+	U6	snRNA	snRNA	chrX	59190772	59190774	+	ENSMUST00000158022.1,ENSMUSG00000088647.1	Gm26487	ENSMUSG00000088647.1	ENSMUST00000158022.1	snRNA	chrX:59190773-59190866
chrX	59849638	59854679	+	L1Md_T	LINE	L1	chrX	59854660	59854662	+	ENSMUST00000196884.1,ENSMUSG00000105409.1	Gm44318	ENSMUSG00000105409.1	ENSMUST00000196884.1	miRNA	chrX:59854661-59854729
chrX	60257551	60257658	+	U6	snRNA	snRNA	chrX	60257551	60257553	+	ENSMUST00000083197.1,ENSMUSG00000094896.1	Gm22287	ENSMUSG00000094896.1	ENSMUST00000083197.1	snRNA	chrX:60257552-60257658
chrX	60403939	60404109	+	C-rich	Low_complexity	Low_complexity	chrX	60403980	60403982	-	ENSMUST00000033480.12,ENSMUSG00000062949.13	Atp11c	ENSMUSG00000062949.13	ENSMUST00000033480.12	protein_coding	chrX:60223293-60403981
chrX	60403939	60404109	+	C-rich	Low_complexity	Low_complexity	chrX	60403980	60403982	-	ENSMUST00000101527.2,ENSMUSG00000062949.13	Atp11c	ENSMUSG00000062949.13	ENSMUST00000101527.2	protein_coding	chrX:60223293-60403981
chrX	60456006	60456204	-	MTD	LTR	ERVL-MaLR	chrX	60456194	60456196	-	ENSMUST00000190178.6,ENSMUSG00000079583.9	Gm7073	ENSMUSG00000079583.9	ENSMUST00000190178.6	protein_coding	chrX:60436052-60456195
chrX	60557621	60557778	-	B4A	SINE	B4	chrX	60557727	60557729	+	ENSMUST00000152669.1,ENSMUSG00000067835.4	Gm14661	ENSMUSG00000067835.4	ENSMUST00000152669.1	antisense	chrX:60557728-60807993
chrX	60592601	60592713	+	LTR16B	LTR	ERVL	chrX	60592697	60592699	-	ENSMUST00000154051.7,ENSMUSG00000062949.13	Atp11c	ENSMUSG00000062949.13	ENSMUST00000154051.7	protein_coding	chrX:60223290-60592698
chrX	60592601	60592713	+	LTR16B	LTR	ERVL	chrX	60592697	60592699	-	ENSMUST00000138569.1,ENSMUSG00000062949.13	Atp11c	ENSMUSG00000062949.13	ENSMUST00000138569.1	protein_coding	chrX:60235461-60592698
chrX	60615111	60615253	+	MLT1H2	LTR	ERVL-MaLR	chrX	60615250	60615252	-	ENSMUST00000147192.1,ENSMUSG00000086562.1	Gm14651	ENSMUSG00000086562.1	ENSMUST00000147192.1	processed_pseudogene	chrX:60614810-60615251
chrX	60818206	60818297	-	MTD	LTR	ERVL-MaLR	chrX	60818207	60818209	+	ENSMUST00000119809.1,ENSMUSG00000081891.1	Gm14660	ENSMUSG00000081891.1	ENSMUST00000119809.1	processed_pseudogene	chrX:60818208-60818782
chrX	61145259	61145370	+	RSINE1	SINE	B4	chrX	61145361	61145363	+	ENSMUST00000116905.2,ENSMUSG00000080555.2	Gm24396	ENSMUSG00000080555.2	ENSMUST00000116905.2	miRNA	chrX:61145362-61145454
chrX	61938890	61938997	+	U6	snRNA	snRNA	chrX	61938890	61938892	+	ENSMUST00000180258.1,ENSMUSG00000096222.1	Gm25412	ENSMUSG00000096222.1	ENSMUST00000180258.1	snRNA	chrX:61938891-61938997
chrX	62254807	62255176	+	GA-rich	Low_complexity	Low_complexity	chrX	62255047	62255049	+	ENSMUST00000122164.1,ENSMUSG00000083576.1	Gm16411	ENSMUSG00000083576.1	ENSMUST00000122164.1	processed_pseudogene	chrX:62255048-62256147
chrX	64495942	64496587	+	L1_Mur1	LINE	L1	chrX	64496583	64496585	+	ENSMUST00000122510.1,ENSMUSG00000084459.1	Gm24598	ENSMUSG00000084459.1	ENSMUST00000122510.1	snoRNA	chrX:64496584-64496657
chrX	64800510	64800616	+	U6	snRNA	snRNA	chrX	64800510	64800512	+	ENSMUST00000083969.1,ENSMUSG00000065903.1	Gm26111	ENSMUSG00000065903.1	ENSMUST00000083969.1	snRNA	chrX:64800511-64800616
chrX	66448165	66448407	+	7SK	RNA	RNA	chrX	66448165	66448167	+	ENSMUST00000158773.1,ENSMUSG00000089398.1	Gm23028	ENSMUSG00000089398.1	ENSMUST00000158773.1	misc_RNA	chrX:66448166-66448430
chrX	67458024	67458232	+	LTR101_Mam	LTR	ERVL	chrX	67458195	67458197	+	ENSMUST00000136834.1,ENSMUSG00000086185.1	1700036O09Rik	ENSMUSG00000086185.1	ENSMUST00000136834.1	lincRNA	chrX:67458196-67459203
chrX	68949561	68949684	-	5S	rRNA	rRNA	chrX	68949683	68949685	-	ENSMUST00000083755.1,ENSMUSG00000065689.1	n-R5s7	ENSMUSG00000065689.1	ENSMUST00000083755.1	rRNA	chrX:68949564-68949684
chrX	69360336	69360439	+	(CCG)n	Simple_repeat	Simple_repeat	chrX	69360340	69360342	-	ENSMUST00000187253.1,ENSMUSG00000086676.2	Gm14705	ENSMUSG00000086676.2	ENSMUST00000187253.1	antisense	chrX:69357958-69360341
chrX	70651758	70658580	-	L1Md_F2	LINE	L1	chrX	70653549	70653551	-	ENSMUST00000119410.1,ENSMUSG00000084185.1	Rplp1-ps1	ENSMUSG00000084185.1	ENSMUST00000119410.1	processed_pseudogene	chrX:70653206-70653550
chrX	71301369	71301535	+	RSINE1	SINE	B4	chrX	71301368	71301370	+	ENSMUST00000129722.1,ENSMUSG00000031337.16	Mtm1	ENSMUSG00000031337.16	ENSMUST00000129722.1	protein_coding	chrX:71301369-71315691
chrX	72611803	72611908	+	U6	snRNA	snRNA	chrX	72611802	72611804	+	ENSMUST00000083265.1,ENSMUSG00000065199.1	Gm23461	ENSMUSG00000065199.1	ENSMUST00000083265.1	snRNA	chrX:72611803-72611909
chrX	72656181	72656351	+	CT-rich	Low_complexity	Low_complexity	chrX	72656185	72656187	-	ENSMUST00000055966.12,ENSMUSG00000031343.13	Gabra3	ENSMUSG00000031343.13	ENSMUST00000055966.12	protein_coding	chrX:72432681-72656186
chrX	72656181	72656351	+	CT-rich	Low_complexity	Low_complexity	chrX	72656245	72656247	-	ENSMUST00000137517.1,ENSMUSG00000031343.13	Gabra3	ENSMUSG00000031343.13	ENSMUST00000137517.1	protein_coding	chrX:72501194-72656246
chrX	72692393	72692988	-	Lx5	LINE	L1	chrX	72692844	72692846	-	ENSMUST00000121470.1,ENSMUSG00000082657.1	Gm14736	ENSMUSG00000082657.1	ENSMUST00000121470.1	processed_pseudogene	chrX:72692510-72692845
chrX	73050005	73050302	+	MamGyp-int	LTR	Gypsy	chrX	73050005	73050007	+	ENSMUST00000208582.1,ENSMUSG00000109025.1	Gm6858	ENSMUSG00000109025.1	ENSMUST00000208582.1	unprocessed_pseudogene	chrX:73050006-73051473
chrX	73064761	73065829	+	MamGyp-int	LTR	Gypsy	chrX	73064786	73064788	+	ENSMUST00000060418.7,ENSMUSG00000046287.7	Pnma3	ENSMUSG00000046287.7	ENSMUST00000060418.7	protein_coding	chrX:73064787-73068191
chrX	73407538	73407855	-	ORR1D1	LTR	ERVL-MaLR	chrX	73407675	73407677	+	ENSMUST00000191768.1,ENSMUSG00000103141.1	Gm37741	ENSMUSG00000103141.1	ENSMUST00000191768.1	TEC	chrX:73407676-73408931
chrX	73447277	73447452	+	B2_Mm2	SINE	B2	chrX	73447278	73447280	-	ENSMUST00000131140.1,ENSMUSG00000031371.14	Haus7	ENSMUSG00000031371.14	ENSMUST00000131140.1	protein_coding	chrX:73437317-73447279
chrX	73483486	73483642	+	C-rich	Low_complexity	Low_complexity	chrX	73483601	73483603	+	ENSMUST00000133394.7,ENSMUSG00000031375.17	Bgn	ENSMUSG00000031375.17	ENSMUST00000133394.7	protein_coding	chrX:73483602-73492746
chrX	73483486	73483642	+	C-rich	Low_complexity	Low_complexity	chrX	73483601	73483603	+	ENSMUST00000033741.14,ENSMUSG00000031375.17	Bgn	ENSMUSG00000031375.17	ENSMUST00000033741.14	protein_coding	chrX:73483602-73495933
chrX	73483486	73483642	+	C-rich	Low_complexity	Low_complexity	chrX	73483622	73483624	+	ENSMUST00000141945.1,ENSMUSG00000031375.17	Bgn	ENSMUSG00000031375.17	ENSMUST00000141945.1	protein_coding	chrX:73483623-73492398
chrX	73483486	73483642	+	C-rich	Low_complexity	Low_complexity	chrX	73483632	73483634	+	ENSMUST00000130873.2,ENSMUSG00000031375.17	Bgn	ENSMUSG00000031375.17	ENSMUST00000130873.2	protein_coding	chrX:73483633-73486298
chrX	73483486	73483642	+	C-rich	Low_complexity	Low_complexity	chrX	73483634	73483636	+	ENSMUST00000169489.1,ENSMUSG00000031375.17	Bgn	ENSMUSG00000031375.17	ENSMUST00000169489.1	protein_coding	chrX:73483635-73495929
chrX	73483486	73483642	+	C-rich	Low_complexity	Low_complexity	chrX	73483638	73483640	+	ENSMUST00000140803.1,ENSMUSG00000031375.17	Bgn	ENSMUSG00000031375.17	ENSMUST00000140803.1	protein_coding	chrX:73483639-73492382
chrX	73660018	73660140	+	(CCG)n	Simple_repeat	Simple_repeat	chrX	73660116	73660118	-	ENSMUST00000114472.7,ENSMUSG00000002012.13	Pnck	ENSMUSG00000002012.13	ENSMUST00000114472.7	protein_coding	chrX:73655995-73660117
chrX	73673599	73673780	+	C-rich	Low_complexity	Low_complexity	chrX	73673706	73673708	+	ENSMUST00000164449.7,ENSMUSG00000019558.14	Slc6a8	ENSMUSG00000019558.14	ENSMUST00000164449.7	protein_coding	chrX:73673707-73681291
chrX	73880757	73880810	+	(CTG)n	Simple_repeat	Simple_repeat	chrX	73880794	73880796	-	ENSMUST00000129612.7,ENSMUSG00000031391.18	L1cam	ENSMUSG00000031391.18	ENSMUST00000129612.7	protein_coding	chrX:73863713-73880795
chrX	73911328	73911359	+	GC_rich	Low_complexity	Low_complexity	chrX	73911335	73911337	-	ENSMUST00000114405.7,ENSMUSG00000031389.17	Arhgap4	ENSMUSG00000031389.17	ENSMUST00000114405.7	protein_coding	chrX:73891442-73911336
chrX	73911328	73911359	+	GC_rich	Low_complexity	Low_complexity	chrX	73911329	73911331	-	ENSMUST00000064376.12,ENSMUSG00000031389.17	Arhgap4	ENSMUSG00000031389.17	ENSMUST00000064376.12	protein_coding	chrX:73894352-73911330
chrX	74023720	74023801	+	GC_rich	Low_complexity	Low_complexity	chrX	74023744	74023746	-	ENSMUST00000114353.9,ENSMUSG00000031392.18	Irak1	ENSMUSG00000031392.18	ENSMUST00000114353.9	protein_coding	chrX:74015440-74023745
chrX	74023720	74023801	+	GC_rich	Low_complexity	Low_complexity	chrX	74023744	74023746	-	ENSMUST00000101458.8,ENSMUSG00000031392.18	Irak1	ENSMUSG00000031392.18	ENSMUST00000101458.8	protein_coding	chrX:74015440-74023745
chrX	74023720	74023801	+	GC_rich	Low_complexity	Low_complexity	chrX	74023726	74023728	-	ENSMUST00000149809.7,ENSMUSG00000031392.18	Irak1	ENSMUSG00000031392.18	ENSMUST00000149809.7	protein_coding	chrX:74022238-74023727
chrX	74136183	74136206	+	GC_rich	Low_complexity	Low_complexity	chrX	74136186	74136188	-	ENSMUST00000119643.1,ENSMUSG00000081118.1	Gm6758	ENSMUSG00000081118.1	ENSMUST00000119643.1	processed_pseudogene	chrX:74135133-74136187
chrX	74304970	74305008	+	GC_rich	Low_complexity	Low_complexity	chrX	74304997	74304999	+	ENSMUST00000015435.10,ENSMUSG00000015291.10	Gdi1	ENSMUSG00000015291.10	ENSMUST00000015435.10	protein_coding	chrX:74304998-74311862
chrX	74305258	74305321	+	(CAG)n	Simple_repeat	Simple_repeat	chrX	74305266	74305268	+	ENSMUST00000149391.7,ENSMUSG00000015291.10	Gdi1	ENSMUSG00000015291.10	ENSMUST00000149391.7	protein_coding	chrX:74305267-74311858
chrX	74305258	74305321	+	(CAG)n	Simple_repeat	Simple_repeat	chrX	74305312	74305314	+	ENSMUST00000153141.1,ENSMUSG00000015291.10	Gdi1	ENSMUSG00000015291.10	ENSMUST00000153141.1	protein_coding	chrX:74305313-74307149
chrX	74313106	74313174	+	(CCG)n	Simple_repeat	Simple_repeat	chrX	74313125	74313127	+	ENSMUST00000138242.1,ENSMUSG00000001962.8	Fam50a	ENSMUSG00000001962.8	ENSMUST00000138242.1	protein_coding	chrX:74313126-74320134
chrX	74317240	74317375	+	B1_Mur2	SINE	Alu	chrX	74317361	74317363	+	ENSMUST00000199697.1,ENSMUSG00000106409.1	Mir7092	ENSMUSG00000106409.1	ENSMUST00000199697.1	miRNA	chrX:74317362-74317429
chrX	74534285	74534391	+	U6	snRNA	snRNA	chrX	74534284	74534286	+	ENSMUST00000083357.1,ENSMUSG00000065291.1	Gm26125	ENSMUSG00000065291.1	ENSMUST00000083357.1	snRNA	chrX:74534285-74534391
chrX	74713801	74713873	-	U6	snRNA	snRNA	chrX	74713800	74713802	-	ENSMUST00000122392.1,ENSMUSG00000080777.1	Gm15365	ENSMUSG00000080777.1	ENSMUST00000122392.1	processed_pseudogene	chrX:74713502-74713801
chrX	74713801	74713873	-	U6	snRNA	snRNA	chrX	74713872	74713874	-	ENSMUST00000083925.2,ENSMUSG00000065859.2	Gm22351	ENSMUSG00000065859.2	ENSMUST00000083925.2	snRNA	chrX:74713767-74713873
chrX	74997576	74997683	-	U6	snRNA	snRNA	chrX	74997682	74997684	-	ENSMUST00000084001.1,ENSMUSG00000065935.1	Gm25629	ENSMUSG00000065935.1	ENSMUST00000084001.1	snRNA	chrX:74997577-74997683
chrX	75010368	75010592	+	RLTR16B_MM	LTR	ERVK	chrX	75010589	75010591	+	ENSMUST00000122398.1,ENSMUSG00000082873.1	Gm15367	ENSMUSG00000082873.1	ENSMUST00000122398.1	processed_pseudogene	chrX:75010590-75011605
chrX	75084743	75084890	+	(CTG)n	Simple_repeat	Simple_repeat	chrX	75084756	75084758	-	ENSMUST00000114104.1,ENSMUSG00000032750.13	Gab3	ENSMUSG00000032750.13	ENSMUST00000114104.1	protein_coding	chrX:74988704-75084757
chrX	75100892	75100967	+	(TC)n	Simple_repeat	Simple_repeat	chrX	75100947	75100949	+	ENSMUST00000154422.1,ENSMUSG00000031403.14	Dkc1	ENSMUSG00000031403.14	ENSMUST00000154422.1	protein_coding	chrX:75100948-75105766
chrX	75382408	75382430	+	GC_rich	Low_complexity	Low_complexity	chrX	75382421	75382423	+	ENSMUST00000147998.1,ENSMUSG00000031198.4	Fundc2	ENSMUSG00000031198.4	ENSMUST00000147998.1	protein_coding	chrX:75382422-75387475
chrX	75409895	75410104	+	MIRb	SINE	MIR	chrX	75409911	75409913	-	ENSMUST00000120286.1,ENSMUSG00000090110.8	Cmc4	ENSMUSG00000090110.8	ENSMUST00000120286.1	protein_coding	chrX:75405070-75409912
chrX	75459895	75461887	+	L1VL2	LINE	L1	chrX	75459962	75459964	+	ENSMUST00000118725.1,ENSMUSG00000083093.1	Gm15385	ENSMUSG00000083093.1	ENSMUST00000118725.1	unprocessed_pseudogene	chrX:75459963-75485753
chrX	75550965	75551744	-	L1Md_F	LINE	L1	chrX	75551116	75551118	+	ENSMUST00000138832.1,ENSMUSG00000086573.1	Gm15384	ENSMUSG00000086573.1	ENSMUST00000138832.1	antisense	chrX:75551117-75551824
chrX	75578808	75578971	-	U1	snRNA	snRNA	chrX	75578970	75578972	-	ENSMUST00000104218.1,ENSMUSG00000077406.1	Gm25421	ENSMUSG00000077406.1	ENSMUST00000104218.1	snRNA	chrX:75578808-75578971
chrX	75930215	75930291	-	ID4	SINE	ID	chrX	75930226	75930228	-	ENSMUST00000156823.1,ENSMUSG00000085598.1	Gm14715	ENSMUSG00000085598.1	ENSMUST00000156823.1	lincRNA	chrX:75916131-75930227
chrX	76261026	76261425	-	MMERVK9C_I-int	LTR	ERVK	chrX	76261391	76261393	-	ENSMUST00000140450.1,ENSMUSG00000086207.1	Gm14717	ENSMUSG00000086207.1	ENSMUST00000140450.1	antisense	chrX:76246984-76261392
chrX	77579486	77579575	+	U1	snRNA	snRNA	chrX	77579486	77579488	+	ENSMUST00000157653.1,ENSMUSG00000088278.1	Gm23121	ENSMUSG00000088278.1	ENSMUST00000157653.1	snRNA	chrX:77579487-77579659
chrX	77803089	77803582	-	MT2_Mm	LTR	ERVL	chrX	77803279	77803281	-	ENSMUST00000148284.1,ENSMUSG00000085973.1	Gm14742	ENSMUSG00000085973.1	ENSMUST00000148284.1	lincRNA	chrX:77802351-77803280
chrX	78411229	78416201	-	L1Md_F2	LINE	L1	chrX	78416197	78416199	+	ENSMUST00000118480.1,ENSMUSG00000082865.1	Gm14745	ENSMUSG00000082865.1	ENSMUST00000118480.1	processed_pseudogene	chrX:78416198-78417293
chrX	78858275	78858736	-	MT2_Mm	LTR	ERVL	chrX	78858280	78858282	-	ENSMUST00000119613.1,ENSMUSG00000083258.3	Gm5939	ENSMUSG00000083258.3	ENSMUST00000119613.1	processed_pseudogene	chrX:78855408-78858281
chrX	78908526	78908671	+	MER5A1	DNA	hAT-Charlie	chrX	78908639	78908641	-	ENSMUST00000157821.1,ENSMUSG00000088446.1	Gm23556	ENSMUSG00000088446.1	ENSMUST00000157821.1	miRNA	chrX:78908549-78908640
chrX	79190354	79196303	+	L1_Mus1	LINE	L1	chrX	79195046	79195048	+	ENSMUST00000118723.1,ENSMUSG00000081049.1	Rps24-ps3	ENSMUSG00000081049.1	ENSMUST00000118723.1	processed_pseudogene	chrX:79195047-79195448
chrX	79357869	79358269	-	MTA_Mm	LTR	ERVL-MaLR	chrX	79357958	79357960	-	ENSMUST00000114021.3,ENSMUSG00000073077.6	Gm7173	ENSMUSG00000073077.6	ENSMUST00000114021.3	protein_coding	chrX:79330711-79357959
chrX	79357869	79358269	-	MTA_Mm	LTR	ERVL-MaLR	chrX	79358067	79358069	-	ENSMUST00000196318.1,ENSMUSG00000073077.6	Gm7173	ENSMUSG00000073077.6	ENSMUST00000196318.1	protein_coding	chrX:79345550-79358068
chrX	79671364	79671896	-	RMER20C_Mm	LTR	ERVK	chrX	79671434	79671436	-	ENSMUST00000052283.6,ENSMUSG00000046942.17	Mageb16	ENSMUSG00000046942.17	ENSMUST00000052283.6	protein_coding	chrX:79623231-79671435
chrX	81073102	81073137	+	(A)n	Simple_repeat	Simple_repeat	chrX	81073101	81073103	-	ENSMUST00000180684.1,ENSMUSG00000096919.1	Gm26775	ENSMUSG00000096919.1	ENSMUST00000180684.1	lincRNA	chrX:81070694-81073102
chrX	82187677	82187780	+	U6	snRNA	snRNA	chrX	82187681	82187683	+	ENSMUST00000082847.2,ENSMUSG00000064781.2	Gm22686	ENSMUSG00000064781.2	ENSMUST00000082847.2	snRNA	chrX:82187682-82187781
chrX	82401227	82401431	-	Lx3_Mus	LINE	L1	chrX	82401226	82401228	-	ENSMUST00000082806.1,ENSMUSG00000064740.1	Gm24706	ENSMUSG00000064740.1	ENSMUST00000082806.1	snoRNA	chrX:82401091-82401227
chrX	82897385	82897499	-	7SK	RNA	RNA	chrX	82897498	82897500	-	ENSMUST00000157472.1,ENSMUSG00000088097.1	Gm23671	ENSMUSG00000088097.1	ENSMUST00000157472.1	misc_RNA	chrX:82897397-82897499
chrX	82897499	82898101	+	Lx5b	LINE	L1	chrX	82897498	82897500	-	ENSMUST00000157472.1,ENSMUSG00000088097.1	Gm23671	ENSMUSG00000088097.1	ENSMUST00000157472.1	misc_RNA	chrX:82897397-82897499
chrX	83536030	83536137	+	U6	snRNA	snRNA	chrX	83536030	83536032	+	ENSMUST00000083727.1,ENSMUSG00000065661.1	Gm22580	ENSMUSG00000065661.1	ENSMUST00000083727.1	snRNA	chrX:83536031-83536137
chrX	85574002	85574026	+	(CGG)n	Simple_repeat	Simple_repeat	chrX	85574021	85574023	+	ENSMUST00000048250.9,ENSMUSG00000035476.9	Tab3	ENSMUSG00000035476.9	ENSMUST00000048250.9	protein_coding	chrX:85574022-85634469
chrX	85761938	85762050	+	(GAAA)n	Simple_repeat	Simple_repeat	chrX	85761981	85761983	-	ENSMUST00000125081.1,ENSMUSG00000025059.16	Gk	ENSMUSG00000025059.16	ENSMUST00000125081.1	protein_coding	chrX:85758520-85761982
chrX	85825772	85825916	+	B1F	SINE	Alu	chrX	85825891	85825893	+	ENSMUST00000105109.1,ENSMUSG00000078314.2	Gm14762	ENSMUSG00000078314.2	ENSMUST00000105109.1	lincRNA	chrX:85825892-85827662
chrX	85826459	85826661	-	B3	SINE	B2	chrX	85826660	85826662	+	ENSMUST00000122953.1,ENSMUSG00000078314.2	Gm14762	ENSMUSG00000078314.2	ENSMUST00000122953.1	lincRNA	chrX:85826661-85834831
chrX	86406125	86406246	-	5S	rRNA	rRNA	chrX	86406245	86406247	-	ENSMUST00000083824.1,ENSMUSG00000065758.1	n-R5s10	ENSMUSG00000065758.1	ENSMUST00000083824.1	rRNA	chrX:86406128-86406246
chrX	86406246	86406316	+	RMER15	LTR	ERVL	chrX	86406245	86406247	-	ENSMUST00000083824.1,ENSMUSG00000065758.1	n-R5s10	ENSMUSG00000065758.1	ENSMUST00000083824.1	rRNA	chrX:86406128-86406246
chrX	87899484	87900123	+	L1_Mus1	LINE	L1	chrX	87899487	87899489	-	ENSMUST00000175315.2,ENSMUSG00000093056.2	Gm24812	ENSMUSG00000093056.2	ENSMUST00000175315.2	misc_RNA	chrX:87899205-87899488
chrX	88192616	88192706	+	U6	snRNA	snRNA	chrX	88192616	88192618	+	ENSMUST00000083813.1,ENSMUSG00000065747.1	Gm25006	ENSMUSG00000065747.1	ENSMUST00000083813.1	snRNA	chrX:88192617-88192723
chrX	88759508	88759558	-	MIR	SINE	MIR	chrX	88759552	88759554	-	ENSMUST00000122610.1,ENSMUSG00000084559.1	Mir1906-2	ENSMUSG00000084559.1	ENSMUST00000122610.1	miRNA	chrX:88759474-88759553
chrX	89849193	89849717	+	ERVB4_1B-LTR_MM	LTR	ERVK	chrX	89849502	89849504	-	ENSMUST00000178831.2,ENSMUSG00000095818.2	Gm24954	ENSMUSG00000095818.2	ENSMUST00000178831.2	miRNA	chrX:89849394-89849503
chrX	92882451	92882553	+	U6	snRNA	snRNA	chrX	92882450	92882452	+	ENSMUST00000158038.1,ENSMUSG00000088663.1	Gm25332	ENSMUSG00000088663.1	ENSMUST00000158038.1	snRNA	chrX:92882451-92882555
chrX	92988868	92989263	-	MTA_Mm	LTR	ERVL-MaLR	chrX	92989194	92989196	-	ENSMUST00000175588.1,ENSMUSG00000093329.1	Gm24973	ENSMUSG00000093329.1	ENSMUST00000175588.1	miRNA	chrX:92989095-92989195
chrX	94028658	94028959	+	RLTR50B	LTR	ERVK	chrX	94028853	94028855	+	ENSMUST00000139695.1,ENSMUSG00000087640.1	Gm14798	ENSMUSG00000087640.1	ENSMUST00000139695.1	antisense	chrX:94028854-94099304
chrX	94365994	94366072	+	(TC)n	Simple_repeat	Simple_repeat	chrX	94366027	94366029	-	ENSMUST00000113902.1,ENSMUSG00000043549.13	Fam90a1b	ENSMUSG00000043549.13	ENSMUST00000113902.1	protein_coding	chrX:94357156-94366028
chrX	94394814	94394989	+	MER5A	DNA	hAT-Charlie	chrX	94394926	94394928	-	ENSMUST00000199661.1,ENSMUSG00000105544.1	Gm44477	ENSMUSG00000105544.1	ENSMUST00000199661.1	miRNA	chrX:94394818-94394927
chrX	94441385	94442774	+	Lx4A	LINE	L1	chrX	94442731	94442733	+	ENSMUST00000146644.1,ENSMUSG00000084904.1	Gm14827	ENSMUSG00000084904.1	ENSMUST00000146644.1	lincRNA	chrX:94442732-94447727
chrX	94775649	94775856	-	ORR1C2	LTR	ERVL-MaLR	chrX	94775676	94775678	-	ENSMUST00000121899.1,ENSMUSG00000081418.1	Gm14830	ENSMUSG00000081418.1	ENSMUST00000121899.1	processed_pseudogene	chrX:94774978-94775677
chrX	95947368	95947509	+	MIR3	SINE	MIR	chrX	95947454	95947456	-	ENSMUST00000137659.1,ENSMUSG00000057421.12	Las1l	ENSMUSG00000057421.12	ENSMUST00000137659.1	protein_coding	chrX:95940824-95947455
chrX	96359672	96359909	+	MTE2a	LTR	ERVL-MaLR	chrX	96359680	96359682	-	ENSMUST00000118840.2,ENSMUSG00000082317.2	Gm14933	ENSMUSG00000082317.2	ENSMUST00000118840.2	processed_pseudogene	chrX:96358704-96359681
chrX	98727271	98727547	+	Lx7	LINE	L1	chrX	98727411	98727413	-	ENSMUST00000185074.1,ENSMUSG00000099037.1	Gm27554	ENSMUSG00000099037.1	ENSMUST00000185074.1	miRNA	chrX:98727315-98727412
chrX	98814774	98814868	+	U6	snRNA	snRNA	chrX	98814774	98814776	+	ENSMUST00000157991.1,ENSMUSG00000088616.1	Gm26000	ENSMUSG00000088616.1	ENSMUST00000157991.1	snRNA	chrX:98814775-98814881
chrX	98937114	98937298	+	(CTCGG)n	Simple_repeat	Simple_repeat	chrX	98937272	98937274	+	ENSMUST00000151353.7,ENSMUSG00000047694.12	Yipf6	ENSMUSG00000047694.12	ENSMUST00000151353.7	protein_coding	chrX:98937273-98943635
chrX	98937685	98937932	+	(CTCGG)n	Simple_repeat	Simple_repeat	chrX	98937760	98937762	+	ENSMUST00000149082.7,ENSMUSG00000047694.12	Yipf6	ENSMUSG00000047694.12	ENSMUST00000149082.7	protein_coding	chrX:98937761-98944906
chrX	98937685	98937932	+	(CTCGG)n	Simple_repeat	Simple_repeat	chrX	98937760	98937762	+	ENSMUST00000054697.6,ENSMUSG00000047694.12	Yipf6	ENSMUSG00000047694.12	ENSMUST00000054697.6	protein_coding	chrX:98937761-98949017
chrX	99003190	99003254	+	C-rich	Low_complexity	Low_complexity	chrX	99003247	99003249	+	ENSMUST00000149999.7,ENSMUSG00000031216.13	Stard8	ENSMUSG00000031216.13	ENSMUST00000149999.7	protein_coding	chrX:99003248-99065672
chrX	100385002	100385346	+	ORR1A1	LTR	ERVL-MaLR	chrX	100385142	100385144	+	ENSMUST00000145063.7,ENSMUSG00000059327.9	Eda	ENSMUSG00000059327.9	ENSMUST00000145063.7	protein_coding	chrX:100385143-100394438
chrX	100387134	100387461	+	ORR1A1	LTR	ERVL-MaLR	chrX	100387254	100387256	+	ENSMUST00000123547.1,ENSMUSG00000059327.9	Eda	ENSMUSG00000059327.9	ENSMUST00000123547.1	protein_coding	chrX:100387255-100395036
chrX	100442593	100442957	-	Lx4B	LINE	L1	chrX	100442716	100442718	-	ENSMUST00000147103.1,ENSMUSG00000031220.14	Awat2	ENSMUSG00000031220.14	ENSMUST00000147103.1	protein_coding	chrX:100402226-100442717
chrX	100749420	100749672	+	7SK	RNA	RNA	chrX	100749420	100749422	+	ENSMUST00000158405.1,ENSMUSG00000089030.1	Gm22160	ENSMUSG00000089030.1	ENSMUST00000158405.1	misc_RNA	chrX:100749421-100749748
chrX	101005305	101006189	+	RLTR25A	LTR	ERVK	chrX	101005820	101005822	+	ENSMUST00000158580.1,ENSMUSG00000089205.1	Gm24577	ENSMUSG00000089205.1	ENSMUST00000158580.1	snRNA	chrX:101005821-101005883
chrX	101005305	101006189	+	RLTR25A	LTR	ERVK	chrX	101005895	101005897	+	ENSMUST00000158214.2,ENSMUSG00000088839.2	Gm27510	ENSMUSG00000088839.2	ENSMUST00000158214.2	snRNA	chrX:101005896-101005959
chrX	101222541	101222577	+	(CACG)n	Simple_repeat	Simple_repeat	chrX	101222552	101222554	-	ENSMUST00000156473.7,ENSMUSG00000046032.16	Snx12	ENSMUSG00000046032.16	ENSMUST00000156473.7	protein_coding	chrX:101097786-101222553
chrX	101222541	101222577	+	(CACG)n	Simple_repeat	Simple_repeat	chrX	101222548	101222550	-	ENSMUST00000120389.7,ENSMUSG00000046032.16	Snx12	ENSMUSG00000046032.16	ENSMUST00000120389.7	protein_coding	chrX:101211959-101222549
chrX	101222541	101222577	+	(CACG)n	Simple_repeat	Simple_repeat	chrX	101222562	101222564	-	ENSMUST00000077876.3,ENSMUSG00000046032.16	Snx12	ENSMUSG00000046032.16	ENSMUST00000077876.3	protein_coding	chrX:101211959-101222563
chrX	101268722	101269042	+	L2	LINE	L2	chrX	101269022	101269024	-	ENSMUST00000117736.1,ENSMUSG00000092463.1	Gm20489	ENSMUSG00000092463.1	ENSMUST00000117736.1	protein_coding	chrX:101261405-101269023
chrX	101274105	101274230	+	C-rich	Low_complexity	Low_complexity	chrX	101274228	101274230	+	ENSMUST00000117203.7,ENSMUSG00000079487.11	Med12	ENSMUSG00000079487.11	ENSMUST00000117203.7	protein_coding	chrX:101274229-101297465
chrX	101300458	101300546	+	CT-rich	Low_complexity	Low_complexity	chrX	101300473	101300475	+	ENSMUST00000147443.1,ENSMUSG00000031302.16	Nlgn3	ENSMUSG00000031302.16	ENSMUST00000147443.1	protein_coding	chrX:101300474-101302054
chrX	101314286	101314407	-	MER5A	DNA	hAT-Charlie	chrX	101314390	101314392	+	ENSMUST00000144860.1,ENSMUSG00000031302.16	Nlgn3	ENSMUSG00000031302.16	ENSMUST00000144860.1	protein_coding	chrX:101314391-101318151
chrX	101445767	101445928	-	B2_Mm1a	SINE	B2	chrX	101445822	101445824	+	ENSMUST00000134783.1,ENSMUSG00000031311.17	Nono	ENSMUSG00000031311.17	ENSMUST00000134783.1	protein_coding	chrX:101445823-101447818
chrX	101793253	101793422	+	(CAG)n	Simple_repeat	Simple_repeat	chrX	101793262	101793264	-	ENSMUST00000124577.7,ENSMUSG00000045010.14	Gm4779	ENSMUSG00000045010.14	ENSMUST00000124577.7	protein_coding	chrX:101790053-101793263
chrX	101793253	101793422	+	(CAG)n	Simple_repeat	Simple_repeat	chrX	101793307	101793309	-	ENSMUST00000056225.7,ENSMUSG00000045010.14	Gm4779	ENSMUSG00000045010.14	ENSMUST00000056225.7	protein_coding	chrX:101791225-101793308
chrX	101823081	101829759	-	Lx	LINE	L1	chrX	101824514	101824516	+	ENSMUST00000119546.1,ENSMUSG00000082284.1	H3f3a-ps1	ENSMUSG00000082284.1	ENSMUST00000119546.1	processed_pseudogene	chrX:101824515-101824924
chrX	101912714	101913019	-	L1MCa	LINE	L1	chrX	101912723	101912725	-	ENSMUST00000157087.1,ENSMUSG00000087712.1	Gm25828	ENSMUSG00000087712.1	ENSMUST00000157087.1	snRNA	chrX:101912630-101912724
chrX	102013129	102013326	-	L1MA4	LINE	L1	chrX	102013151	102013153	-	ENSMUST00000184273.1,ENSMUSG00000098968.1	Gm27843	ENSMUSG00000098968.1	ENSMUST00000184273.1	miRNA	chrX:102013049-102013152
chrX	102255423	102255582	-	B1_Mur4	SINE	Alu	chrX	102255524	102255526	-	ENSMUST00000176507.1,ENSMUSG00000093428.1	Gm26318	ENSMUSG00000093428.1	ENSMUST00000176507.1	miRNA	chrX:102255430-102255525
chrX	103253033	103253663	+	Lx7	LINE	L1	chrX	103253046	103253048	-	ENSMUST00000182224.7,ENSMUSG00000031325.15	4930519F16Rik	ENSMUSG00000031325.15	ENSMUST00000182224.7	transcribed_unitary_pseudogene	chrX:103230094-103253047
chrX	103298095	103298479	-	MTA_Mm	LTR	ERVL-MaLR	chrX	103298309	103298311	-	ENSMUST00000182605.7,ENSMUSG00000031325.15	4930519F16Rik	ENSMUSG00000031325.15	ENSMUST00000182605.7	transcribed_unitary_pseudogene	chrX:103232922-103298310
chrX	103383143	103383181	+	PB1D9	SINE	Alu	chrX	103383168	103383170	-	ENSMUST00000181996.1,ENSMUSG00000097953.1	Gm26952	ENSMUSG00000097953.1	ENSMUST00000181996.1	antisense	chrX:103381957-103383169
chrX	103431449	103431522	+	(TG)n	Simple_repeat	Simple_repeat	chrX	103431516	103431518	+	ENSMUST00000152916.1,ENSMUSG00000085715.2	Tsix	ENSMUSG00000085715.2	ENSMUST00000152916.1	antisense	chrX:103431517-103484957
chrX	103572957	103573111	-	L2c	LINE	L2	chrX	103572995	103572997	-	ENSMUST00000083575.3,ENSMUSG00000065509.3	Mir421	ENSMUSG00000065509.3	ENSMUST00000083575.3	miRNA	chrX:103572921-103572996
chrX	103572957	103573111	-	L2c	LINE	L2	chrX	103573084	103573086	+	ENSMUST00000197862.1,ENSMUSG00000106465.1	Mir374c	ENSMUSG00000106465.1	ENSMUST00000197862.1	miRNA	chrX:103573085-103573133
chrX	103616931	103616986	+	G-rich	Low_complexity	Low_complexity	chrX	103616953	103616955	-	ENSMUST00000156240.7,ENSMUSG00000086370.8	Ftx	ENSMUSG00000086370.8	ENSMUST00000156240.7	lincRNA	chrX:103562897-103616954
chrX	103734125	103734213	+	MIR	SINE	MIR	chrX	103734188	103734190	-	ENSMUST00000148684.2,ENSMUSG00000033965.10	Slc16a2	ENSMUSG00000033965.10	ENSMUST00000148684.2	protein_coding	chrX:103706384-103734189
chrX	103821981	103822074	+	CT-rich	Low_complexity	Low_complexity	chrX	103821982	103821984	-	ENSMUST00000042664.9,ENSMUSG00000033965.10	Slc16a2	ENSMUSG00000033965.10	ENSMUST00000042664.9	protein_coding	chrX:103697414-103821983
chrX	104001478	104001525	-	PB1D10	SINE	Alu	chrX	104001478	104001480	-	ENSMUST00000082942.1,ENSMUSG00000064876.1	Gm23378	ENSMUSG00000064876.1	ENSMUST00000082942.1	snRNA	chrX:104001373-104001479
chrX	104076939	104077070	-	MER5A1	DNA	hAT-Charlie	chrX	104076970	104076972	+	ENSMUST00000157411.1,ENSMUSG00000088036.1	Gm24993	ENSMUSG00000088036.1	ENSMUST00000157411.1	miRNA	chrX:104076971-104077061
chrX	104201072	104201185	+	(CTG)n	Simple_repeat	Simple_repeat	chrX	104201184	104201186	-	ENSMUST00000118314.7,ENSMUSG00000046449.15	Nexmif	ENSMUSG00000046449.15	ENSMUST00000118314.7	protein_coding	chrX:104077434-104201185
chrX	104201072	104201185	+	(CTG)n	Simple_repeat	Simple_repeat	chrX	104201116	104201118	-	ENSMUST00000087879.10,ENSMUSG00000046449.15	Nexmif	ENSMUSG00000046449.15	ENSMUST00000087879.10	protein_coding	chrX:104077435-104201117
chrX	104201072	104201185	+	(CTG)n	Simple_repeat	Simple_repeat	chrX	104201143	104201145	-	ENSMUST00000056502.6,ENSMUSG00000046449.15	Nexmif	ENSMUSG00000046449.15	ENSMUST00000056502.6	protein_coding	chrX:104083714-104201144
chrX	105020269	105020378	-	U6	snRNA	snRNA	chrX	105020377	105020379	-	ENSMUST00000158335.1,ENSMUSG00000088960.1	Gm22090	ENSMUSG00000088960.1	ENSMUST00000158335.1	snRNA	chrX:105020268-105020378
chrX	105379137	105379236	-	L2a	LINE	L2	chrX	105379178	105379180	-	ENSMUST00000083491.1,ENSMUSG00000065425.1	Mir325	ENSMUSG00000065425.1	ENSMUST00000083491.1	miRNA	chrX:105379082-105379179
chrX	105387872	105387950	+	MIRc	SINE	MIR	chrX	105387913	105387915	-	ENSMUST00000130264.1,ENSMUSG00000087620.7	5330434G04Rik	ENSMUSG00000087620.7	ENSMUST00000130264.1	lincRNA	chrX:105375662-105387914
chrX	105819882	105820062	+	U2	snRNA	snRNA	chrX	105819882	105819884	+	ENSMUST00000122729.1,ENSMUSG00000084678.1	Gm26020	ENSMUSG00000084678.1	ENSMUST00000122729.1	snRNA	chrX:105819883-105820065
chrX	105851431	105851727	+	L1M3	LINE	L1	chrX	105851525	105851527	-	ENSMUST00000146193.2,ENSMUSG00000031229.16	Atrx	ENSMUSG00000031229.16	ENSMUST00000146193.2	protein_coding	chrX:105846737-105851526
chrX	105873823	105873934	+	U6	snRNA	snRNA	chrX	105873823	105873825	+	ENSMUST00000122626.1,ENSMUSG00000084575.1	Gm23656	ENSMUSG00000084575.1	ENSMUST00000122626.1	snRNA	chrX:105873824-105873935
chrX	105880287	105880432	-	B1F1	SINE	Alu	chrX	105880386	105880388	-	ENSMUST00000133543.1,ENSMUSG00000031229.16	Atrx	ENSMUSG00000031229.16	ENSMUST00000133543.1	protein_coding	chrX:105878369-105880387
chrX	106019315	106019462	-	B1_Mus1	SINE	Alu	chrX	106019390	106019392	+	ENSMUST00000155377.1,ENSMUSG00000031231.4	Cox7b	ENSMUSG00000031231.4	ENSMUST00000155377.1	protein_coding	chrX:106019391-106021958
chrX	106187083	106187140	+	G-rich	Low_complexity	Low_complexity	chrX	106187099	106187101	+	ENSMUST00000081593.12,ENSMUSG00000062070.12	Pgk1	ENSMUSG00000062070.12	ENSMUST00000081593.12	protein_coding	chrX:106187100-106203699
chrX	106580841	106580952	+	PB1D10	SINE	Alu	chrX	106580860	106580862	-	ENSMUST00000064892.3,ENSMUSG00000052821.3	Cysltr1	ENSMUSG00000052821.3	ENSMUST00000064892.3	protein_coding	chrX:106577820-106580861
chrX	106587480	106587642	-	U1	snRNA	snRNA	chrX	106587641	106587643	-	ENSMUST00000082619.1,ENSMUSG00000064553.1	Gm24622	ENSMUSG00000064553.1	ENSMUST00000082619.1	snRNA	chrX:106587481-106587642
chrX	106649913	106650019	-	U6	snRNA	snRNA	chrX	106650018	106650020	-	ENSMUST00000083799.1,ENSMUSG00000065733.1	Gm24491	ENSMUSG00000065733.1	ENSMUST00000083799.1	snRNA	chrX:106649913-106650019
chrX	106650019	106650945	-	L1_Mur2	LINE	L1	chrX	106650018	106650020	-	ENSMUST00000083799.1,ENSMUSG00000065733.1	Gm24491	ENSMUSG00000065733.1	ENSMUST00000083799.1	snRNA	chrX:106649913-106650019
chrX	106696877	106697311	+	MT2_Mm	LTR	ERVL	chrX	106697077	106697079	+	ENSMUST00000116730.1,ENSMUSG00000080380.1	Gm22102	ENSMUSG00000080380.1	ENSMUST00000116730.1	miRNA	chrX:106697078-106697198
chrX	107255883	107256012	+	(GA)n	Simple_repeat	Simple_repeat	chrX	107255970	107255972	+	ENSMUST00000118820.7,ENSMUSG00000073008.11	Gpr174	ENSMUSG00000073008.11	ENSMUST00000118820.7	protein_coding	chrX:107255971-107296767
chrX	108405672	108405737	+	(CCTCG)n	Simple_repeat	Simple_repeat	chrX	108405687	108405689	+	ENSMUST00000120797.1,ENSMUSG00000082354.1	Gm378	ENSMUSG00000082354.1	ENSMUST00000120797.1	processed_pseudogene	chrX:108405688-108406768
chrX	108834321	108834459	+	G-rich	Low_complexity	Low_complexity	chrX	108834347	108834349	-	ENSMUST00000150434.7,ENSMUSG00000063663.11	Brwd3	ENSMUSG00000063663.11	ENSMUST00000150434.7	protein_coding	chrX:108737016-108834348
chrX	108834321	108834459	+	G-rich	Low_complexity	Low_complexity	chrX	108834371	108834373	-	ENSMUST00000041866.11,ENSMUSG00000063663.11	Brwd3	ENSMUSG00000063663.11	ENSMUST00000041866.11	protein_coding	chrX:108742568-108834372
chrX	108834321	108834459	+	G-rich	Low_complexity	Low_complexity	chrX	108834371	108834373	-	ENSMUST00000144521.7,ENSMUSG00000063663.11	Brwd3	ENSMUSG00000063663.11	ENSMUST00000144521.7	protein_coding	chrX:108742568-108834372
chrX	108834321	108834459	+	G-rich	Low_complexity	Low_complexity	chrX	108834339	108834341	-	ENSMUST00000134434.1,ENSMUSG00000063663.11	Brwd3	ENSMUSG00000063663.11	ENSMUST00000134434.1	protein_coding	chrX:108803352-108834340
chrX	108834321	108834459	+	G-rich	Low_complexity	Low_complexity	chrX	108834345	108834347	-	ENSMUST00000101283.3,ENSMUSG00000063663.11	Brwd3	ENSMUSG00000063663.11	ENSMUST00000101283.3	protein_coding	chrX:108820897-108834346
chrX	108903362	108904634	-	Lx8	LINE	L1	chrX	108903385	108903387	+	ENSMUST00000124329.1,ENSMUSG00000086629.8	2810403D21Rik	ENSMUSG00000086629.8	ENSMUST00000124329.1	processed_transcript	chrX:108903386-108974906
chrX	109009680	109009847	-	U1	snRNA	snRNA	chrX	109009846	109009848	-	ENSMUST00000104464.1,ENSMUSG00000077652.1	Gm23322	ENSMUSG00000077652.1	ENSMUST00000104464.1	snRNA	chrX:109009681-109009847
chrX	109023355	109023462	-	U6	snRNA	snRNA	chrX	109023461	109023463	-	ENSMUST00000082640.1,ENSMUSG00000064574.1	Gm25797	ENSMUSG00000064574.1	ENSMUST00000082640.1	snRNA	chrX:109023356-109023462
chrX	109023462	109023801	-	Lx3C	LINE	L1	chrX	109023461	109023463	-	ENSMUST00000082640.1,ENSMUSG00000064574.1	Gm25797	ENSMUSG00000064574.1	ENSMUST00000082640.1	snRNA	chrX:109023356-109023462
chrX	112239044	112239254	-	ORR1D1	LTR	ERVL-MaLR	chrX	112239048	112239050	+	ENSMUST00000152343.7,ENSMUSG00000079460.11	4933403O08Rik	ENSMUSG00000079460.11	ENSMUST00000152343.7	protein_coding	chrX:112239049-112243852
chrX	113009341	113009760	+	MusHAL1	LINE	L1	chrX	113009753	113009755	-	ENSMUST00000137765.1,ENSMUSG00000084963.1	Gm14936	ENSMUSG00000084963.1	ENSMUST00000137765.1	lincRNA	chrX:112980864-113009754
chrX	113297438	113297516	+	(CA)n	Simple_repeat	Simple_repeat	chrX	113297509	113297511	+	ENSMUST00000113380.7,ENSMUSG00000025592.17	Dach2	ENSMUSG00000025592.17	ENSMUST00000113380.7	protein_coding	chrX:113297510-113836386
chrX	114054304	114054327	+	(GA)n	Simple_repeat	Simple_repeat	chrX	114054303	114054305	-	ENSMUST00000117448.1,ENSMUSG00000084031.1	Gm7416	ENSMUSG00000084031.1	ENSMUST00000117448.1	processed_pseudogene	chrX:114052511-114054304
chrX	115373894	115373964	-	U4	snRNA	snRNA	chrX	115373963	115373965	-	ENSMUST00000158845.1,ENSMUSG00000089470.1	Gm25366	ENSMUSG00000089470.1	ENSMUST00000158845.1	snRNA	chrX:115373841-115373964
chrX	116747781	116750714	+	L1VL4	LINE	L1	chrX	116748841	116748843	+	ENSMUST00000157893.1,ENSMUSG00000088518.1	Gm24438	ENSMUSG00000088518.1	ENSMUST00000157893.1	snoRNA	chrX:116748842-116748956
chrX	116896939	116898572	+	L1_Mur2	LINE	L1	chrX	116896950	116896952	+	ENSMUST00000120839.1,ENSMUSG00000080954.1	Gm14919	ENSMUSG00000080954.1	ENSMUST00000120839.1	processed_pseudogene	chrX:116896951-116897340
chrX	119749495	119749977	-	MT2_Mm	LTR	ERVL	chrX	119749676	119749678	-	ENSMUST00000152079.1,ENSMUSG00000086431.1	Gm14929	ENSMUSG00000086431.1	ENSMUST00000152079.1	lincRNA	chrX:119747626-119749677
chrX	120290210	120290294	+	C-rich	Low_complexity	Low_complexity	chrX	120290258	120290260	+	ENSMUST00000113364.9,ENSMUSG00000034755.18	Pcdh11x	ENSMUSG00000034755.18	ENSMUST00000113364.9	protein_coding	chrX:120290259-120906344
chrX	120290210	120290294	+	C-rich	Low_complexity	Low_complexity	chrX	120290258	120290260	+	ENSMUST00000050239.15,ENSMUSG00000034755.18	Pcdh11x	ENSMUSG00000034755.18	ENSMUST00000050239.15	protein_coding	chrX:120290259-120906344
chrX	120363991	120364026	+	(CAA)n	Simple_repeat	Simple_repeat	chrX	120364012	120364014	+	ENSMUST00000192677.5,ENSMUSG00000034755.18	Pcdh11x	ENSMUSG00000034755.18	ENSMUST00000192677.5	protein_coding	chrX:120364013-120910607
chrX	121914553	121914659	+	U6	snRNA	snRNA	chrX	121914559	121914561	+	ENSMUST00000157639.1,ENSMUSG00000088264.1	Gm24783	ENSMUSG00000088264.1	ENSMUST00000157639.1	snRNA	chrX:121914560-121914659
chrX	122100829	122100930	+	ERVB7_2B-LTR_MM	LTR	ERVK	chrX	122100926	122100928	+	ENSMUST00000117616.1,ENSMUSG00000082840.1	Gm16421	ENSMUSG00000082840.1	ENSMUST00000117616.1	processed_pseudogene	chrX:122100927-122102483
chrX	123097552	123105087	-	MMERVK10C-int	LTR	ERVK	chrX	123103494	123103496	+	ENSMUST00000113343.7,ENSMUSG00000079450.11	Cldn34c1	ENSMUSG00000079450.11	ENSMUST00000113343.7	protein_coding	chrX:123103495-123145651
chrX	123097552	123105087	-	MMERVK10C-int	LTR	ERVK	chrX	123103534	123103536	+	ENSMUST00000153946.7,ENSMUSG00000079450.11	Cldn34c1	ENSMUSG00000079450.11	ENSMUST00000153946.7	protein_coding	chrX:123103535-123146987
chrX	123097552	123105087	-	MMERVK10C-int	LTR	ERVK	chrX	123103553	123103555	+	ENSMUST00000149445.1,ENSMUSG00000079450.11	Cldn34c1	ENSMUSG00000079450.11	ENSMUST00000149445.1	protein_coding	chrX:123103554-123188795
chrX	123097552	123105087	-	MMERVK10C-int	LTR	ERVK	chrX	123103558	123103560	+	ENSMUST00000113348.7,ENSMUSG00000079450.11	Cldn34c1	ENSMUSG00000079450.11	ENSMUST00000113348.7	protein_coding	chrX:123103559-123145654
chrX	123097552	123105087	-	MMERVK10C-int	LTR	ERVK	chrX	123103567	123103569	+	ENSMUST00000139733.1,ENSMUSG00000079450.11	Cldn34c1	ENSMUSG00000079450.11	ENSMUST00000139733.1	protein_coding	chrX:123103568-123143082
chrX	123116893	123118067	+	Lx5b	LINE	L1	chrX	123117566	123117568	+	ENSMUST00000169445.2,ENSMUSG00000079450.11	Cldn34c1	ENSMUSG00000079450.11	ENSMUST00000169445.2	protein_coding	chrX:123117567-123143270
chrX	123222317	123222579	+	MurSAT1	Satellite	Satellite	chrX	123222480	123222482	-	ENSMUST00000171714.1,ENSMUSG00000091821.1	Srsx	ENSMUSG00000091821.1	ENSMUST00000171714.1	protein_coding	chrX:123221399-123222481
chrX	126170423	126171611	-	Lx5b	LINE	L1	chrX	126171026	126171028	-	ENSMUST00000121069.1,ENSMUSG00000083294.3	Gm14957	ENSMUSG00000083294.3	ENSMUST00000121069.1	unprocessed_pseudogene	chrX:126129808-126171027
chrX	126612493	126613004	-	MERVL_2A-int	LTR	ERVL	chrX	126612515	126612517	-	ENSMUST00000120966.1,ENSMUSG00000082611.1	Gm7746	ENSMUSG00000082611.1	ENSMUST00000120966.1	processed_pseudogene	chrX:126612014-126612516
chrX	127327490	127327583	+	U6	snRNA	snRNA	chrX	127327489	127327491	+	ENSMUST00000158747.1,ENSMUSG00000089372.1	Gm22139	ENSMUSG00000089372.1	ENSMUST00000158747.1	snRNA	chrX:127327490-127327594
chrX	127408391	127408441	-	RMER1C	Other	Other	chrX	127408429	127408431	+	ENSMUST00000158142.1,ENSMUSG00000088767.1	Gm22636	ENSMUSG00000088767.1	ENSMUST00000158142.1	misc_RNA	chrX:127408430-127408704
chrX	127446914	127447278	-	RMER3D-int	LTR	ERVK	chrX	127446915	127446917	-	ENSMUST00000122289.1,ENSMUSG00000082382.1	Gm14970	ENSMUSG00000082382.1	ENSMUST00000122289.1	processed_pseudogene	chrX:127446562-127446916
chrX	127906452	127906559	-	U6	snRNA	snRNA	chrX	127906558	127906560	-	ENSMUST00000104665.1,ENSMUSG00000077857.1	Gm25061	ENSMUSG00000077857.1	ENSMUST00000104665.1	snRNA	chrX:127906453-127906559
chrX	128522575	128523061	-	MT2_Mm	LTR	ERVL	chrX	128522808	128522810	-	ENSMUST00000116769.1,ENSMUSG00000080419.1	Gm26475	ENSMUSG00000080419.1	ENSMUST00000116769.1	miRNA	chrX:128522689-128522809
chrX	128700421	128700559	-	Lx8b	LINE	L1	chrX	128700545	128700547	+	ENSMUST00000083964.1,ENSMUSG00000065898.1	Gm24522	ENSMUSG00000065898.1	ENSMUST00000083964.1	snRNA	chrX:128700546-128700653
chrX	129064241	129064345	+	BGLII_B	LTR	ERVK	chrX	129064296	129064298	+	ENSMUST00000122848.1,ENSMUSG00000086244.1	4930558G05Rik	ENSMUSG00000086244.1	ENSMUST00000122848.1	lincRNA	chrX:129064297-129067146
chrX	130887463	130887984	+	ERVB4_1B-LTR_MM	LTR	ERVK	chrX	130887777	130887779	-	ENSMUST00000103852.1,ENSMUSG00000077040.1	Gm26209	ENSMUSG00000077040.1	ENSMUST00000103852.1	miRNA	chrX:130887669-130887778
chrX	132681824	132682051	+	7SK	RNA	RNA	chrX	132681886	132681888	+	ENSMUST00000157401.1,ENSMUSG00000088026.1	Gm22143	ENSMUSG00000088026.1	ENSMUST00000157401.1	misc_RNA	chrX:132681887-132682089
chrX	134137549	134137867	+	L1M4	LINE	L1	chrX	134137710	134137712	-	ENSMUST00000159231.2,ENSMUSG00000031257.14	Nox1	ENSMUSG00000031257.14	ENSMUST00000159231.2	protein_coding	chrX:134107733-134137711
chrX	134221865	134222030	+	ORR1C2	LTR	ERVL-MaLR	chrX	134221955	134221957	-	ENSMUST00000162833.7,ENSMUSG00000031257.14	Nox1	ENSMUSG00000031257.14	ENSMUST00000162833.7	protein_coding	chrX:134107733-134221956
chrX	134346732	134346831	-	ID_B1	SINE	B4	chrX	134346822	134346824	+	ENSMUST00000125604.1,ENSMUSG00000031262.12	Cenpi	ENSMUSG00000031262.12	ENSMUST00000125604.1	protein_coding	chrX:134346823-134362637
chrX	134404742	134404818	+	(GGA)n	Simple_repeat	Simple_repeat	chrX	134404779	134404781	+	ENSMUST00000113224.8,ENSMUSG00000000223.13	Drp2	ENSMUSG00000000223.13	ENSMUST00000113224.8	protein_coding	chrX:134404780-134453616
chrX	134404742	134404818	+	(GGA)n	Simple_repeat	Simple_repeat	chrX	134404801	134404803	+	ENSMUST00000113226.1,ENSMUSG00000000223.13	Drp2	ENSMUSG00000000223.13	ENSMUST00000113226.1	protein_coding	chrX:134404802-134453007
chrX	134978614	134978794	+	BGLII_B2	LTR	ERVK	chrX	134978627	134978629	-	ENSMUST00000141849.1,ENSMUSG00000052676.16	Zmat1	ENSMUSG00000052676.16	ENSMUST00000141849.1	protein_coding	chrX:134972777-134978628
chrX	134981352	134982098	+	Lx3A	LINE	L1	chrX	134981433	134981435	-	ENSMUST00000151252.1,ENSMUSG00000052676.16	Zmat1	ENSMUSG00000052676.16	ENSMUST00000151252.1	protein_coding	chrX:134972943-134981434
chrX	135009162	135009196	+	(CCG)n	Simple_repeat	Simple_repeat	chrX	135009184	135009186	-	ENSMUST00000113185.8,ENSMUSG00000052676.16	Zmat1	ENSMUSG00000052676.16	ENSMUST00000113185.8	protein_coding	chrX:134971372-135009185
chrX	135036521	135036631	+	RSINE1	SINE	B4	chrX	135036601	135036603	-	ENSMUST00000155136.1,ENSMUSG00000089759.7	3632454L22Rik	ENSMUSG00000089759.7	ENSMUST00000155136.1	processed_transcript	chrX:135027906-135036602
chrX	135598599	135599066	-	MT2C_Mm	LTR	ERVL	chrX	135598776	135598778	-	ENSMUST00000113163.7,ENSMUSG00000031410.14	Nxf7	ENSMUSG00000031410.14	ENSMUST00000113163.7	protein_coding	chrX:135579555-135598777
chrX	135598599	135599066	-	MT2C_Mm	LTR	ERVL	chrX	135598757	135598759	-	ENSMUST00000150900.7,ENSMUSG00000031410.14	Nxf7	ENSMUSG00000031410.14	ENSMUST00000150900.7	protein_coding	chrX:135588443-135598758
chrX	135725215	135725277	+	(GGGTG)n	Simple_repeat	Simple_repeat	chrX	135725260	135725262	-	ENSMUST00000113154.7,ENSMUSG00000060726.10	Tmsb15a	ENSMUSG00000060726.10	ENSMUST00000113154.7	protein_coding	chrX:135718667-135725261
chrX	135785959	135786327	-	ORR1C1	LTR	ERVL-MaLR	chrX	135786216	135786218	-	ENSMUST00000157839.1,ENSMUSG00000088464.1	Mir1970	ENSMUSG00000088464.1	ENSMUST00000157839.1	miRNA	chrX:135786114-135786217
chrX	136277504	136277621	+	5S	rRNA	rRNA	chrX	136277504	136277506	+	ENSMUST00000083785.1,ENSMUSG00000065719.1	n-R5s12	ENSMUSG00000065719.1	ENSMUST00000083785.1	rRNA	chrX:136277505-136277623
chrX	136740281	136740732	-	L1MC5a	LINE	L1	chrX	136740486	136740488	-	ENSMUST00000135731.1,ENSMUSG00000031422.16	Morf4l2	ENSMUSG00000031422.16	ENSMUST00000135731.1	protein_coding	chrX:136734300-136740487
chrX	136740281	136740732	-	L1MC5a	LINE	L1	chrX	136740482	136740484	-	ENSMUST00000131923.1,ENSMUSG00000031422.16	Morf4l2	ENSMUSG00000031422.16	ENSMUST00000131923.1	protein_coding	chrX:136734430-136740483
chrX	136822663	136822718	+	GA-rich	Low_complexity	Low_complexity	chrX	136822670	136822672	+	ENSMUST00000033800.12,ENSMUSG00000031425.15	Plp1	ENSMUSG00000031425.15	ENSMUST00000033800.12	protein_coding	chrX:136822671-136839733
chrX	137641864	137642811	-	Tigger1	DNA	TcMar-Tigger	chrX	137642315	137642317	-	ENSMUST00000117224.1,ENSMUSG00000082135.1	Gm14988	ENSMUSG00000082135.1	ENSMUST00000117224.1	processed_pseudogene	chrX:137638882-137642316
chrX	137815161	137815440	-	7SK	RNA	RNA	chrX	137815439	137815441	-	ENSMUST00000157336.1,ENSMUSG00000087961.1	Gm25393	ENSMUSG00000087961.1	ENSMUST00000157336.1	misc_RNA	chrX:137815156-137815440
chrX	138145430	138145640	-	7SK	RNA	RNA	chrX	138145639	138145641	-	ENSMUST00000158757.1,ENSMUSG00000089382.1	Gm24675	ENSMUSG00000089382.1	ENSMUST00000158757.1	misc_RNA	chrX:138145382-138145640
chrX	138209561	138209634	+	C-rich	Low_complexity	Low_complexity	chrX	138209579	138209581	-	ENSMUST00000096314.2,ENSMUSG00000071686.2	Tex13a	ENSMUSG00000071686.2	ENSMUST00000096314.2	protein_coding	chrX:138208165-138209580
chrX	138303306	138303413	-	U6	snRNA	snRNA	chrX	138303412	138303414	-	ENSMUST00000083387.1,ENSMUSG00000065321.1	Gm22057	ENSMUSG00000065321.1	ENSMUST00000083387.1	snRNA	chrX:138303307-138303413
chrX	139357629	139358200	+	RMER20B	LTR	ERVK	chrX	139357737	139357739	-	ENSMUST00000126591.1,ENSMUSG00000086807.8	Platr21	ENSMUSG00000086807.8	ENSMUST00000126591.1	processed_transcript	chrX:139347491-139357738
chrX	139802772	139802912	-	B1F2	SINE	Alu	chrX	139802786	139802788	+	ENSMUST00000172779.1,ENSMUSG00000047230.6	Cldn2	ENSMUSG00000047230.6	ENSMUST00000172779.1	protein_coding	chrX:139802787-139808713
chrX	139836016	139836114	+	B1F	SINE	Alu	chrX	139836102	139836104	-	ENSMUST00000172366.1,ENSMUSG00000031434.15	Morc4	ENSMUSG00000031434.15	ENSMUST00000172366.1	protein_coding	chrX:139824231-139836103
chrX	140367171	140367700	-	L2a	LINE	L2	chrX	140367493	140367495	+	ENSMUST00000141660.7,ENSMUSG00000042425.18	Frmpd3	ENSMUSG00000042425.18	ENSMUST00000141660.7	protein_coding	chrX:140367494-140393895
chrX	140381939	140381978	+	(GAAAA)n	Simple_repeat	Simple_repeat	chrX	140381970	140381972	+	ENSMUST00000044702.6,ENSMUSG00000042425.18	Frmpd3	ENSMUSG00000042425.18	ENSMUST00000044702.6	protein_coding	chrX:140381971-140394540
chrX	140679695	140679801	+	U6	snRNA	snRNA	chrX	140679695	140679697	+	ENSMUST00000158812.1,ENSMUSG00000089437.1	Gm23199	ENSMUSG00000089437.1	ENSMUST00000158812.1	snRNA	chrX:140679696-140679802
chrX	140748844	140749051	+	ID_B1	SINE	B4	chrX	140748926	140748928	+	ENSMUST00000140144.1,ENSMUSG00000000266.11	Mid2	ENSMUSG00000000266.11	ENSMUST00000140144.1	protein_coding	chrX:140748927-140752117
chrX	140810809	140810897	+	A-rich	Low_complexity	Low_complexity	chrX	140810851	140810853	-	ENSMUST00000132970.1,ENSMUSG00000042386.7	Tex13b	ENSMUSG00000042386.7	ENSMUST00000132970.1	protein_coding	chrX:140809268-140810852
chrX	141902260	141902752	-	RLTR10	LTR	ERVK	chrX	141902454	141902456	-	ENSMUST00000145916.1,ENSMUSG00000086907.1	Gm15298	ENSMUSG00000086907.1	ENSMUST00000145916.1	lincRNA	chrX:141900582-141902455
chrX	142681291	142681427	+	G-rich	Low_complexity	Low_complexity	chrX	142681405	142681407	+	ENSMUST00000112889.7,ENSMUSG00000047045.17	Tmem164	ENSMUSG00000047045.17	ENSMUST00000112889.7	protein_coding	chrX:142681406-142843494
chrX	142681291	142681427	+	G-rich	Low_complexity	Low_complexity	chrX	142681414	142681416	+	ENSMUST00000101198.8,ENSMUSG00000047045.17	Tmem164	ENSMUSG00000047045.17	ENSMUST00000101198.8	protein_coding	chrX:142681415-142838238
chrX	142681291	142681427	+	G-rich	Low_complexity	Low_complexity	chrX	142681414	142681416	+	ENSMUST00000112891.7,ENSMUSG00000047045.17	Tmem164	ENSMUSG00000047045.17	ENSMUST00000112891.7	protein_coding	chrX:142681415-142843494
chrX	142681291	142681427	+	G-rich	Low_complexity	Low_complexity	chrX	142681417	142681419	+	ENSMUST00000087333.8,ENSMUSG00000047045.17	Tmem164	ENSMUSG00000047045.17	ENSMUST00000087333.8	protein_coding	chrX:142681418-142838238
chrX	142825590	142826262	-	L2a	LINE	L2	chrX	142825740	142825742	+	ENSMUST00000112888.1,ENSMUSG00000047045.17	Tmem164	ENSMUSG00000047045.17	ENSMUST00000112888.1	protein_coding	chrX:142825741-142838238
chrX	142962606	142962779	+	MER5A	DNA	hAT-Charlie	chrX	142962696	142962698	-	ENSMUST00000200090.1,ENSMUSG00000106151.1	Gm44351	ENSMUSG00000106151.1	ENSMUST00000200090.1	miRNA	chrX:142962603-142962697
chrX	143518577	143518693	+	CT-rich	Low_complexity	Low_complexity	chrX	143518590	143518592	+	ENSMUST00000033640.13,ENSMUSG00000031284.16	Pak3	ENSMUSG00000031284.16	ENSMUST00000033640.13	protein_coding	chrX:143518591-143797792
chrX	144297578	144298084	-	ERVB4_1B-LTR_MM	LTR	ERVK	chrX	144297789	144297791	+	ENSMUST00000102163.1,ENSMUSG00000076117.1	Mir680-2	ENSMUSG00000076117.1	ENSMUST00000102163.1	miRNA	chrX:144297790-144297899
chrX	144340395	144340539	-	B1_Mur3	SINE	Alu	chrX	144340435	144340437	+	ENSMUST00000199040.1,ENSMUSG00000041718.15	Alg13	ENSMUSG00000041718.15	ENSMUST00000199040.1	protein_coding	chrX:144340436-144345652
chrX	144456560	144456695	+	ID_B1	SINE	B4	chrX	144456580	144456582	+	ENSMUST00000155206.7,ENSMUSG00000072934.10	Trpc5os	ENSMUSG00000072934.10	ENSMUST00000155206.7	protein_coding	chrX:144456581-144477066
chrX	144820187	144820442	+	7SK	RNA	RNA	chrX	144820186	144820188	+	ENSMUST00000158657.1,ENSMUSG00000089282.1	Gm26024	ENSMUSG00000089282.1	ENSMUST00000158657.1	misc_RNA	chrX:144820187-144820508
chrX	145038443	145039380	-	L1_Mus3	LINE	L1	chrX	145039343	145039345	+	ENSMUST00000175176.1,ENSMUSG00000092917.1	Mir3472	ENSMUSG00000092917.1	ENSMUST00000175176.1	miRNA	chrX:145039344-145039414
chrX	145830869	145834266	-	Lx5	LINE	L1	chrX	145833316	145833318	+	ENSMUST00000120604.1,ENSMUSG00000080915.1	Gm6446	ENSMUSG00000080915.1	ENSMUST00000120604.1	processed_pseudogene	chrX:145833317-145834134
chrX	146068649	146070428	+	SRV_MM-int	LTR	ERVK	chrX	146068807	146068809	+	ENSMUST00000120567.1,ENSMUSG00000080755.1	Gm15062	ENSMUSG00000080755.1	ENSMUST00000120567.1	processed_pseudogene	chrX:146068808-146069174
chrX	146293803	146294543	-	RLTR25B	LTR	ERVK	chrX	146293834	146293836	-	ENSMUST00000157425.1,ENSMUSG00000088050.1	Gm26151	ENSMUSG00000088050.1	ENSMUST00000157425.1	snRNA	chrX:146293776-146293835
chrX	146518787	146519235	+	Lx8b	LINE	L1	chrX	146519231	146519233	+	ENSMUST00000117076.1,ENSMUSG00000081197.1	Gm15076	ENSMUSG00000081197.1	ENSMUST00000117076.1	processed_pseudogene	chrX:146519232-146519705
chrX	147010598	147010647	+	L2a	LINE	L2	chrX	147010600	147010602	+	ENSMUST00000175381.1,ENSMUSG00000093122.1	Mir1264	ENSMUSG00000093122.1	ENSMUST00000175381.1	miRNA	chrX:147010601-147010686
chrX	147403819	147403879	+	(TCC)n	Simple_repeat	Simple_repeat	chrX	147403831	147403833	-	ENSMUST00000112827.1,ENSMUSG00000031289.10	Il13ra2	ENSMUSG00000031289.10	ENSMUST00000112827.1	protein_coding	chrX:147383478-147403832
chrX	147429188	147429438	-	L3b	LINE	CR1	chrX	147429191	147429193	-	ENSMUST00000033646.8,ENSMUSG00000031289.10	Il13ra2	ENSMUSG00000031289.10	ENSMUST00000033646.8	protein_coding	chrX:147383476-147429192
chrX	147732695	147733338	+	MurSatRep1	Unknown	Unknown	chrX	147733153	147733155	+	ENSMUST00000121997.1,ENSMUSG00000084191.1	Gm15167	ENSMUSG00000084191.1	ENSMUST00000121997.1	unprocessed_pseudogene	chrX:147733154-147733481
chrX	150225896	150226699	-	MuRRS4-int	LTR	ERV1	chrX	150226020	150226022	-	ENSMUST00000182652.1,ENSMUSG00000048592.9	Gm5946	ENSMUSG00000048592.9	ENSMUST00000182652.1	transcribed_processed_pseudogene	chrX:150220716-150226021
chrX	150367908	150368018	-	IAPEY5_I-int	LTR	ERVK	chrX	150367915	150367917	-	ENSMUST00000117777.1,ENSMUSG00000081928.1	Gm15105	ENSMUSG00000081928.1	ENSMUST00000117777.1	processed_pseudogene	chrX:150367713-150367916
chrX	150586184	150586331	+	B1_Mm	SINE	Alu	chrX	150586206	150586208	-	ENSMUST00000138958.1,ENSMUSG00000025269.16	Apex2	ENSMUSG00000025269.16	ENSMUST00000138958.1	protein_coding	chrX:150572459-150586207
chrX	151047131	151047171	+	CT-rich	Low_complexity	Low_complexity	chrX	151047169	151047171	+	ENSMUST00000026296.7,ENSMUSG00000025265.14	Fgd1	ENSMUSG00000025265.14	ENSMUST00000026296.7	protein_coding	chrX:151047170-151089521
chrX	151067370	151067412	+	GA-rich	Low_complexity	Low_complexity	chrX	151067382	151067384	+	ENSMUST00000124882.1,ENSMUSG00000025265.14	Fgd1	ENSMUSG00000025265.14	ENSMUST00000124882.1	protein_coding	chrX:151067383-151069668
chrX	151261924	151262021	-	U6	snRNA	snRNA	chrX	151262020	151262022	-	ENSMUST00000082590.1,ENSMUSG00000064524.1	Gm26441	ENSMUSG00000064524.1	ENSMUST00000082590.1	snRNA	chrX:151261918-151262021
chrX	151311340	151311429	+	BC1_Mm	scRNA	scRNA	chrX	151311405	151311407	-	ENSMUST00000176662.1,ENSMUSG00000084771.8	A230072E10Rik	ENSMUSG00000084771.8	ENSMUST00000176662.1	antisense	chrX:151293224-151311406
chrX	151341738	151341915	-	LTR72_RN	LTR	ERV1	chrX	151341878	151341880	-	ENSMUST00000175825.1,ENSMUSG00000084771.8	A230072E10Rik	ENSMUSG00000084771.8	ENSMUST00000175825.1	antisense	chrX:151313333-151341879
chrX	151384493	151384641	+	U1	snRNA	snRNA	chrX	151384493	151384495	+	ENSMUST00000082482.1,ENSMUSG00000064416.1	Gm22248	ENSMUSG00000064416.1	ENSMUST00000082482.1	snRNA	chrX:151384494-151384643
chrX	151539805	151539889	-	ID4	SINE	ID	chrX	151539804	151539806	-	ENSMUST00000082731.1,ENSMUSG00000064665.1	Gm24460	ENSMUSG00000064665.1	ENSMUST00000082731.1	snoRNA	chrX:151539700-151539805
chrX	151777670	151777788	+	5S	rRNA	rRNA	chrX	151777670	151777672	+	ENSMUST00000093707.1,ENSMUSG00000070219.1	n-R5s13	ENSMUSG00000070219.1	ENSMUST00000093707.1	rRNA	chrX:151777671-151777789
chrX	151859559	151859673	+	(GCCTG)n	Simple_repeat	Simple_repeat	chrX	151859561	151859563	+	ENSMUST00000175478.1,ENSMUSG00000093219.1	Mir3113	ENSMUSG00000093219.1	ENSMUST00000175478.1	miRNA	chrX:151859562-151859637
chrX	151904843	151905061	+	L1_Mus2	LINE	L1	chrX	151904993	151904995	+	ENSMUST00000150426.7,ENSMUSG00000025261.17	Huwe1	ENSMUSG00000025261.17	ENSMUST00000150426.7	protein_coding	chrX:151904994-151909917
chrX	151985310	151985401	+	5S	rRNA	rRNA	chrX	151985309	151985311	+	ENSMUST00000122688.1,ENSMUSG00000084637.1	n-R5s14	ENSMUSG00000084637.1	ENSMUST00000122688.1	rRNA	chrX:151985310-151985416
chrX	152144227	152144274	+	(CGG)n	Simple_repeat	Simple_repeat	chrX	152144267	152144269	+	ENSMUST00000168786.7,ENSMUSG00000041115.16	Iqsec2	ENSMUSG00000041115.16	ENSMUST00000168786.7	protein_coding	chrX:152144268-152225235
chrX	152144227	152144274	+	(CGG)n	Simple_repeat	Simple_repeat	chrX	152144271	152144273	+	ENSMUST00000112605.7,ENSMUSG00000041115.16	Iqsec2	ENSMUSG00000041115.16	ENSMUST00000112605.7	protein_coding	chrX:152144272-152225236
chrX	152144227	152144274	+	(CGG)n	Simple_repeat	Simple_repeat	chrX	152144271	152144273	+	ENSMUST00000112604.7,ENSMUSG00000041115.16	Iqsec2	ENSMUSG00000041115.16	ENSMUST00000112604.7	protein_coding	chrX:152144272-152225236
chrX	152304001	152304111	+	5S	rRNA	rRNA	chrX	152304000	152304002	+	ENSMUST00000122635.1,ENSMUSG00000084584.1	n-R5s15	ENSMUSG00000084584.1	ENSMUST00000122635.1	rRNA	chrX:152304001-152304111
chrX	152317963	152318071	+	MLT1A1	LTR	ERVL-MaLR	chrX	152318010	152318012	-	ENSMUST00000125102.1,ENSMUSG00000087403.9	Kantr	ENSMUSG00000087403.9	ENSMUST00000125102.1	protein_coding	chrX:152315216-152318011
chrX	152341723	152341825	+	CT-rich	Low_complexity	Low_complexity	chrX	152341800	152341802	-	ENSMUST00000177748.1,ENSMUSG00000041096.13	Tspyl2	ENSMUSG00000041096.13	ENSMUST00000177748.1	protein_coding	chrX:152340265-152341801
chrX	152907040	152912611	-	Lx3B	LINE	L1	chrX	152910295	152910297	-	ENSMUST00000120384.1,ENSMUSG00000083440.1	Rpl7a-ps12	ENSMUSG00000083440.1	ENSMUST00000120384.1	processed_pseudogene	chrX:152908778-152910296
chrX	152907040	152912611	-	Lx3B	LINE	L1	chrX	152910154	152910156	-	ENSMUST00000178147.2,ENSMUSG00000095597.2	Gm6472	ENSMUSG00000095597.2	ENSMUST00000178147.2	transcribed_processed_pseudogene	chrX:152909505-152910155
chrX	152907040	152912611	-	Lx3B	LINE	L1	chrX	152910119	152910121	-	ENSMUST00000187973.1,ENSMUSG00000095597.2	Gm6472	ENSMUSG00000095597.2	ENSMUST00000187973.1	transcribed_processed_pseudogene	chrX:152909539-152910120
chrX	152923533	152923760	-	7SK	RNA	RNA	chrX	152923759	152923761	-	ENSMUST00000083065.1,ENSMUSG00000064999.1	Gm26035	ENSMUSG00000064999.1	ENSMUST00000083065.1	misc_RNA	chrX:152923453-152923760
chrX	153118344	153119710	+	Lx6	LINE	L1	chrX	153118785	153118787	+	ENSMUST00000096265.9,ENSMUSG00000071665.10	Foxr2	ENSMUSG00000071665.10	ENSMUST00000096265.9	protein_coding	chrX:153118786-153132861
chrX	153576487	153576594	-	U6	snRNA	snRNA	chrX	153576593	153576595	-	ENSMUST00000083287.1,ENSMUSG00000065221.1	Gm25793	ENSMUSG00000065221.1	ENSMUST00000083287.1	snRNA	chrX:153576488-153576594
chrX	153696329	153696412	+	(CAAAG)n	Simple_repeat	Simple_repeat	chrX	153696390	153696392	-	ENSMUST00000112572.2,ENSMUSG00000041633.14	Kctd12b	ENSMUSG00000041633.14	ENSMUST00000112572.2	protein_coding	chrX:153685154-153696391
chrX	153915204	153915477	-	RLTR47	LTR	ERVK	chrX	153915214	153915216	-	ENSMUST00000083714.1,ENSMUSG00000065648.1	Gm25895	ENSMUSG00000065648.1	ENSMUST00000083714.1	snRNA	chrX:153915116-153915215
chrX	154979205	154979342	-	ORR1A4	LTR	ERVL-MaLR	chrX	154979338	154979340	+	ENSMUST00000083907.1,ENSMUSG00000094976.1	Gm25257	ENSMUSG00000094976.1	ENSMUST00000083907.1	snRNA	chrX:154979339-154979448
chrX	155046477	155046613	-	ORR1A4	LTR	ERVL-MaLR	chrX	155046609	155046611	+	ENSMUST00000082990.1,ENSMUSG00000096247.1	Gm24268	ENSMUSG00000096247.1	ENSMUST00000082990.1	snRNA	chrX:155046610-155046719
chrX	155214881	155214909	+	(A)n	Simple_repeat	Simple_repeat	chrX	155214903	155214905	-	ENSMUST00000138944.7,ENSMUSG00000025283.15	Sat1	ENSMUSG00000025283.15	ENSMUST00000138944.7	protein_coding	chrX:155213306-155214904
chrX	155293788	155293874	-	PB1D7	SINE	Alu	chrX	155293842	155293844	+	ENSMUST00000126200.1,ENSMUSG00000025287.15	Acot9	ENSMUSG00000025287.15	ENSMUST00000126200.1	protein_coding	chrX:155293843-155296913
chrX	155543289	155543394	+	5S	rRNA	rRNA	chrX	155543289	155543291	+	ENSMUST00000104555.1,ENSMUSG00000077743.1	n-R5s16	ENSMUSG00000077743.1	ENSMUST00000104555.1	rRNA	chrX:155543290-155543408
chrX	155922827	155922991	+	MT2B	LTR	ERVL	chrX	155922916	155922918	+	ENSMUST00000120553.1,ENSMUSG00000081386.1	Gm15160	ENSMUSG00000081386.1	ENSMUST00000120553.1	processed_pseudogene	chrX:155922917-155923823
chrX	156456077	156456112	+	AT_rich	Low_complexity	Low_complexity	chrX	156456094	156456096	-	ENSMUST00000082543.1,ENSMUSG00000064477.1	Gm23404	ENSMUSG00000064477.1	ENSMUST00000082543.1	snoRNA	chrX:156455999-156456095
chrX	157053955	157054073	+	U1	snRNA	snRNA	chrX	157053954	157053956	+	ENSMUST00000158717.1,ENSMUSG00000089342.1	Gm22666	ENSMUSG00000089342.1	ENSMUST00000158717.1	snRNA	chrX:157053955-157054118
chrX	157191591	157191986	+	MTA_Mm	LTR	ERVL-MaLR	chrX	157191658	157191660	+	ENSMUST00000175560.1,ENSMUSG00000093301.1	Gm23798	ENSMUSG00000093301.1	ENSMUST00000175560.1	miRNA	chrX:157191659-157191760
chrX	157579622	157579904	-	ORR1A2	LTR	ERVL-MaLR	chrX	157579782	157579784	-	ENSMUST00000134211.7,ENSMUSG00000046873.18	Mbtps2	ENSMUSG00000046873.18	ENSMUST00000134211.7	protein_coding	chrX:157569066-157579783
chrX	157797980	157798018	-	RMER6D	LTR	ERVK	chrX	157798011	157798013	-	ENSMUST00000126095.1,ENSMUSG00000086188.1	Gm15169	ENSMUSG00000086188.1	ENSMUST00000126095.1	antisense	chrX:157785159-157798012
chrX	157798018	157798487	+	IAPLTR2_Mm	LTR	ERVK	chrX	157798018	157798020	-	ENSMUST00000130794.1,ENSMUSG00000086188.1	Gm15169	ENSMUSG00000086188.1	ENSMUST00000130794.1	antisense	chrX:157757427-157798019
chrX	157866864	157867457	+	Lx5	LINE	L1	chrX	157866870	157866872	-	ENSMUST00000139664.1,ENSMUSG00000025658.16	Cnksr2	ENSMUSG00000025658.16	ENSMUST00000139664.1	protein_coding	chrX:157858578-157866871
chrX	158247505	158252528	+	L1_Mus3	LINE	L1	chrX	158248796	158248798	+	ENSMUST00000118644.1,ENSMUSG00000081797.1	Gm8662	ENSMUSG00000081797.1	ENSMUST00000118644.1	processed_pseudogene	chrX:158248797-158249370
chrX	159361982	159362348	-	MTB	LTR	ERVL-MaLR	chrX	159362320	159362322	+	ENSMUST00000142668.1,ENSMUSG00000031309.15	Rps6ka3	ENSMUSG00000031309.15	ENSMUST00000142668.1	protein_coding	chrX:159362321-159363505
chrX	159372149	159372186	+	GA-rich	Low_complexity	Low_complexity	chrX	159372177	159372179	+	ENSMUST00000133252.1,ENSMUSG00000067194.6	Eif1ax	ENSMUSG00000067194.6	ENSMUST00000133252.1	protein_coding	chrX:159372178-159376558
chrX	159372149	159372186	+	GA-rich	Low_complexity	Low_complexity	chrX	159372177	159372179	+	ENSMUST00000087143.6,ENSMUSG00000067194.6	Eif1ax	ENSMUSG00000067194.6	ENSMUST00000087143.6	protein_coding	chrX:159372178-159389928
chrX	159449276	159449366	+	5S	rRNA	rRNA	chrX	159449276	159449278	+	ENSMUST00000175157.1,ENSMUSG00000092898.1	Gm23806	ENSMUSG00000092898.1	ENSMUST00000175157.1	rRNA	chrX:159449277-159449385
chrX	159526166	159527844	-	RMER17C-int	LTR	ERVK	chrX	159526687	159526689	+	ENSMUST00000144598.7,ENSMUSG00000044150.12	Bclaf3	ENSMUSG00000044150.12	ENSMUST00000144598.7	protein_coding	chrX:159526688-159551839
chrX	159566737	159566861	-	L1MB7	LINE	L1	chrX	159566848	159566850	+	ENSMUST00000149054.7,ENSMUSG00000044150.12	Bclaf3	ENSMUSG00000044150.12	ENSMUST00000149054.7	protein_coding	chrX:159566849-159592202
chrX	160296766	160298495	-	L1_Mus3	LINE	L1	chrX	160298477	160298479	+	ENSMUST00000121005.1,ENSMUSG00000083318.1	Gm15192	ENSMUSG00000083318.1	ENSMUST00000121005.1	unprocessed_pseudogene	chrX:160298478-160298770
chrX	160499684	160500000	-	ORR1A1	LTR	ERVL-MaLR	chrX	160499869	160499871	-	ENSMUST00000125700.1,ENSMUSG00000087505.1	Gm15241	ENSMUSG00000087505.1	ENSMUST00000125700.1	antisense	chrX:160488549-160499870
chrX	161234566	161234621	+	L1MA9	LINE	L1	chrX	161234572	161234574	+	ENSMUST00000124775.1,ENSMUSG00000000037.16	Scml2	ENSMUSG00000000037.16	ENSMUST00000124775.1	protein_coding	chrX:161234573-161239864
chrX	161287274	161287471	-	MTB	LTR	ERVL-MaLR	chrX	161287455	161287457	+	ENSMUST00000141946.2,ENSMUSG00000108981.1	Gm15262	ENSMUSG00000108981.1	ENSMUST00000141946.2	protein_coding	chrX:161287456-161307699
chrX	161297721	161297758	+	(T)n	Simple_repeat	Simple_repeat	chrX	161297738	161297740	+	ENSMUST00000208374.1,ENSMUSG00000108981.1	Gm15262	ENSMUSG00000108981.1	ENSMUST00000208374.1	protein_coding	chrX:161297739-161308532
chrX	161717055	161717105	+	(CA)n	Simple_repeat	Simple_repeat	chrX	161717068	161717070	+	ENSMUST00000112338.1,ENSMUSG00000043518.7	Rai2	ENSMUSG00000043518.7	ENSMUST00000112338.1	protein_coding	chrX:161717069-161779494
chrX	162069456	162069563	+	U6	snRNA	snRNA	chrX	162069456	162069458	+	ENSMUST00000083894.1,ENSMUSG00000065828.1	Gm26317	ENSMUSG00000065828.1	ENSMUST00000083894.1	snRNA	chrX:162069457-162069563
chrX	162114237	162114341	+	U6	snRNA	snRNA	chrX	162114237	162114239	+	ENSMUST00000084009.1,ENSMUSG00000065943.1	Gm23794	ENSMUSG00000065943.1	ENSMUST00000084009.1	snRNA	chrX:162114238-162114341
chrX	162305074	162305302	-	7SK	RNA	RNA	chrX	162305301	162305303	-	ENSMUST00000122649.1,ENSMUSG00000084598.1	Gm23867	ENSMUSG00000084598.1	ENSMUST00000122649.1	misc_RNA	chrX:162305029-162305302
chrX	162305272	162305727	+	MLT1D	LTR	ERVL-MaLR	chrX	162305301	162305303	-	ENSMUST00000122649.1,ENSMUSG00000084598.1	Gm23867	ENSMUSG00000084598.1	ENSMUST00000122649.1	misc_RNA	chrX:162305029-162305302
chrX	162643553	162643636	+	(CCG)n	Simple_repeat	Simple_repeat	chrX	162643600	162643602	-	ENSMUST00000101102.1,ENSMUSG00000040855.15	Reps2	ENSMUSG00000040855.15	ENSMUST00000101102.1	protein_coding	chrX:162411954-162643601
chrX	162812455	162812484	+	(A)n	Simple_repeat	Simple_repeat	chrX	162812480	162812482	-	ENSMUST00000131463.1,ENSMUSG00000038344.14	Txlng	ENSMUSG00000038344.14	ENSMUST00000131463.1	protein_coding	chrX:162778919-162812481
chrX	162812598	162812749	-	B2_Mm2	SINE	B2	chrX	162812632	162812634	-	ENSMUST00000112314.7,ENSMUSG00000038344.14	Txlng	ENSMUSG00000038344.14	ENSMUST00000112314.7	protein_coding	chrX:162788917-162812633
chrX	162850236	162850390	-	B1_Mus1	SINE	Alu	chrX	162850263	162850265	-	ENSMUST00000157570.1,ENSMUSG00000088195.1	Gm23901	ENSMUSG00000088195.1	ENSMUST00000157570.1	snRNA	chrX:162850158-162850264
chrX	162874971	162875165	+	B2_Mm1t	SINE	B2	chrX	162874994	162874996	-	ENSMUST00000175011.1,ENSMUSG00000092752.1	Mir3473a	ENSMUSG00000092752.1	ENSMUST00000175011.1	miRNA	chrX:162874918-162874995
chrX	162941496	162941591	-	L2a	LINE	L2	chrX	162941554	162941556	+	ENSMUST00000148199.1,ENSMUSG00000031360.14	Ctps2	ENSMUSG00000031360.14	ENSMUST00000148199.1	protein_coding	chrX:162941555-162941844
chrX	162969024	162969136	-	MLT1D	LTR	ERVL-MaLR	chrX	162969104	162969106	+	ENSMUST00000112300.1,ENSMUSG00000031360.14	Ctps2	ENSMUSG00000031360.14	ENSMUST00000112300.1	protein_coding	chrX:162969105-163031319
chrX	163069656	163069869	-	7SK	RNA	RNA	chrX	163069868	163069870	-	ENSMUST00000157744.1,ENSMUSG00000088369.1	Gm23501	ENSMUSG00000088369.1	ENSMUST00000157744.1	misc_RNA	chrX:163069614-163069869
chrX	163150390	163150497	-	U6	snRNA	snRNA	chrX	163150496	163150498	-	ENSMUST00000082494.1,ENSMUSG00000064428.1	Gm22746	ENSMUSG00000064428.1	ENSMUST00000082494.1	snRNA	chrX:163150391-163150497
chrX	163958131	163958195	+	C-rich	Low_complexity	Low_complexity	chrX	163958161	163958163	-	ENSMUST00000139166.1,ENSMUSG00000031370.12	Zrsr2	ENSMUSG00000031370.12	ENSMUST00000139166.1	protein_coding	chrX:163953591-163958162
chrX	164133384	164133503	+	5S	rRNA	rRNA	chrX	164133384	164133386	+	ENSMUST00000122740.1,ENSMUSG00000084689.1	n-R5s18	ENSMUSG00000084689.1	ENSMUST00000122740.1	rRNA	chrX:164133385-164133505
chrX	164268084	164268176	-	U6	snRNA	snRNA	chrX	164268175	164268177	-	ENSMUST00000158846.1,ENSMUSG00000089471.1	Gm25367	ENSMUSG00000089471.1	ENSMUST00000158846.1	snRNA	chrX:164268071-164268176
chrX	165717408	165717515	-	U6	snRNA	snRNA	chrX	165717514	165717516	-	ENSMUST00000082563.1,ENSMUSG00000064497.1	Gm22062	ENSMUSG00000064497.1	ENSMUST00000082563.1	snRNA	chrX:165717409-165717515
chrX	165717515	165717880	-	L1VL2	LINE	L1	chrX	165717514	165717516	-	ENSMUST00000082563.1,ENSMUSG00000064497.1	Gm22062	ENSMUSG00000064497.1	ENSMUST00000082563.1	snRNA	chrX:165717409-165717515
chrX	166178392	166178425	+	(GAAAA)n	Simple_repeat	Simple_repeat	chrX	166178401	166178403	+	ENSMUST00000166440.1,ENSMUSG00000040621.14	Gemin8	ENSMUSG00000040621.14	ENSMUST00000166440.1	protein_coding	chrX:166178402-166180792
chrX	166178392	166178425	+	(GAAAA)n	Simple_repeat	Simple_repeat	chrX	166178422	166178424	+	ENSMUST00000152248.1,ENSMUSG00000040621.14	Gemin8	ENSMUSG00000040621.14	ENSMUST00000152248.1	protein_coding	chrX:166178423-166189342
chrX	166935435	166935485	-	Tigger17	DNA	TcMar-Tigger	chrX	166935468	166935470	+	ENSMUST00000119174.1,ENSMUSG00000082019.1	Gm15231	ENSMUSG00000082019.1	ENSMUST00000119174.1	processed_pseudogene	chrX:166935469-166935915
chrX	166957078	166957225	-	MER5A1	DNA	hAT-Charlie	chrX	166957098	166957100	+	ENSMUST00000197570.1,ENSMUSG00000104948.1	Gm44376	ENSMUSG00000104948.1	ENSMUST00000197570.1	miRNA	chrX:166957099-166957226
chrX	167070216	167070587	-	MTB_Mm	LTR	ERVL-MaLR	chrX	167070379	167070381	-	ENSMUST00000133867.7,ENSMUSG00000086008.8	Gm8817	ENSMUSG00000086008.8	ENSMUST00000133867.7	lincRNA	chrX:167063194-167070380
chrX	167070216	167070587	-	MTB_Mm	LTR	ERVL-MaLR	chrX	167070379	167070381	-	ENSMUST00000126769.7,ENSMUSG00000086008.8	Gm8817	ENSMUSG00000086008.8	ENSMUST00000126769.7	lincRNA	chrX:167063336-167070380
chrX	167897487	167897619	+	MIRc	SINE	MIR	chrX	167897557	167897559	-	ENSMUST00000112145.2,ENSMUSG00000049176.14	Frmpd4	ENSMUSG00000049176.14	ENSMUST00000112145.2	protein_coding	chrX:167471313-167897558
chrX	167902315	167902416	+	5S	rRNA	rRNA	chrX	167902314	167902316	+	ENSMUST00000158507.1,ENSMUSG00000089132.1	Gm24772	ENSMUSG00000089132.1	ENSMUST00000158507.1	rRNA	chrX:167902315-167902424
chrX	168658918	168659177	-	ORR1E	LTR	ERVL-MaLR	chrX	168659017	168659019	-	ENSMUST00000145564.1,ENSMUSG00000031358.17	Msl3	ENSMUSG00000031358.17	ENSMUST00000145564.1	protein_coding	chrX:168654122-168659018
chrX	168775239	168775301	+	CT-rich	Low_complexity	Low_complexity	chrX	168775255	168775257	-	ENSMUST00000118747.1,ENSMUSG00000081500.1	Gm15233	ENSMUSG00000081500.1	ENSMUST00000118747.1	processed_pseudogene	chrX:168774857-168775256
chrX	169036583	169036635	+	C-rich	Low_complexity	Low_complexity	chrX	169036610	169036612	+	ENSMUST00000143048.1,ENSMUSG00000031355.16	Arhgap6	ENSMUSG00000031355.16	ENSMUST00000143048.1	protein_coding	chrX:169036611-169251527
chrX	169036583	169036635	+	C-rich	Low_complexity	Low_complexity	chrX	169036610	169036612	+	ENSMUST00000087016.10,ENSMUSG00000031355.16	Arhgap6	ENSMUSG00000031355.16	ENSMUST00000087016.10	protein_coding	chrX:169036611-169254074
chrX	169036583	169036635	+	C-rich	Low_complexity	Low_complexity	chrX	169036610	169036612	+	ENSMUST00000112129.7,ENSMUSG00000031355.16	Arhgap6	ENSMUSG00000031355.16	ENSMUST00000112129.7	protein_coding	chrX:169036611-169258987
chrX	169036583	169036635	+	C-rich	Low_complexity	Low_complexity	chrX	169036610	169036612	+	ENSMUST00000139146.7,ENSMUSG00000031355.16	Arhgap6	ENSMUSG00000031355.16	ENSMUST00000139146.7	protein_coding	chrX:169036611-169304435
chrX	169036583	169036635	+	C-rich	Low_complexity	Low_complexity	chrX	169036610	169036612	+	ENSMUST00000112131.8,ENSMUSG00000031355.16	Arhgap6	ENSMUSG00000031355.16	ENSMUST00000112131.8	protein_coding	chrX:169036611-169304435
chrX	169443340	169448559	-	Lx4A	LINE	L1	chrX	169447829	169447831	+	ENSMUST00000129410.1,ENSMUSG00000087587.1	Gm15245	ENSMUSG00000087587.1	ENSMUST00000129410.1	lincRNA	chrX:169447830-169475913
chrX	170009652	170009674	+	(CCG)n	Simple_repeat	Simple_repeat	chrX	170009658	170009660	+	ENSMUST00000179760.1,ENSMUSG00000095562.7	Gm21887	ENSMUSG00000095562.7	ENSMUST00000179760.1	protein_coding	chrX:170009659-170019281
chrX	170745747	170747515	-	MurSatRep1	Unknown	Unknown	chrX	170747206	170747208	-	ENSMUST00000117792.1,ENSMUSG00000096661.1	Gm15069	ENSMUSG00000096661.1	ENSMUST00000117792.1	processed_pseudogene	chrX:170746836-170747207
chrX	170868500	170870268	-	MurSatRep1	Unknown	Unknown	chrX	170869959	170869961	-	ENSMUST00000119796.1,ENSMUSG00000094276.1	Gm15068	ENSMUSG00000094276.1	ENSMUST00000119796.1	processed_pseudogene	chrX:170869589-170869960
chrY	847645	848000	-	RLTR10D2	LTR	ERVK	chrY	847749	847751	-	ENSMUST00000191581.1,ENSMUSG00000101036.1	Gm28588	ENSMUSG00000101036.1	ENSMUST00000191581.1	antisense	chrY:841783-847750
chrY	873307	873331	+	(CACCC)n	Simple_repeat	Simple_repeat	chrY	873308	873310	-	ENSMUST00000187181.1,ENSMUSG00000101107.1	Gm28587	ENSMUSG00000101107.1	ENSMUST00000187181.1	lincRNA	chrY:869709-873309
chrY	914506	916536	-	Lx5	LINE	L1	chrY	916528	916530	+	ENSMUST00000187296.1,ENSMUSG00000056673.14	Kdm5d	ENSMUSG00000056673.14	ENSMUST00000187296.1	protein_coding	chrY:916529-943562
chrY	991627	991748	-	5S	rRNA	rRNA	chrY	991747	991749	-	ENSMUST00000101925.1,ENSMUSG00000075874.1	n-R5s1	ENSMUSG00000075874.1	ENSMUST00000101925.1	rRNA	chrY:991630-991748
chrY	991627	991748	-	5S	rRNA	rRNA	chrY	991715	991717	-	ENSMUST00000197757.1,ENSMUSG00000106618.1	Gm47281	ENSMUSG00000106618.1	ENSMUST00000197757.1	miRNA	chrY:991657-991716
chrY	1022257	1023234	-	RLTR13E	LTR	ERVK	chrY	1023105	1023107	+	ENSMUST00000134820.1,ENSMUSG00000069049.11	Eif2s3y	ENSMUSG00000069049.11	ENSMUST00000134820.1	protein_coding	chrY:1023106-1028408
chrY	1046951	1048785	+	Lx2B2	LINE	L1	chrY	1048392	1048394	+	ENSMUST00000188485.1,ENSMUSG00000099876.1	Gm29650	ENSMUSG00000099876.1	ENSMUST00000188485.1	lincRNA	chrY:1048393-1049134
chrY	1137181	1137215	+	(A)n	Simple_repeat	Simple_repeat	chrY	1137180	1137182	-	ENSMUST00000185837.1,ENSMUSG00000068457.14	Uty	ENSMUSG00000068457.14	ENSMUST00000185837.1	protein_coding	chrY:1134814-1137181
chrY	2073556	2076581	-	MMERVK10C-int	LTR	ERVK	chrY	2076579	2076581	+	ENSMUST00000187893.1,ENSMUSG00000100326.1	Gm28974	ENSMUSG00000100326.1	ENSMUST00000187893.1	processed_pseudogene	chrY:2076580-2076810
chrY	2078192	2078602	-	RLTR10C	LTR	ERVK	chrY	2078595	2078597	+	ENSMUST00000190809.1,ENSMUSG00000100356.1	Gm18797	ENSMUSG00000100356.1	ENSMUST00000190809.1	unprocessed_pseudogene	chrY:2078596-2085281
chrY	2446081	2446123	+	AT_rich	Low_complexity	Low_complexity	chrY	2446107	2446109	-	ENSMUST00000175594.1,ENSMUSG00000093335.1	Gm22119	ENSMUSG00000093335.1	ENSMUST00000175594.1	miRNA	chrY:2446010-2446108
chrY	4666806	4667313	-	RLTR45	LTR	ERVK	chrY	4666847	4666849	+	ENSMUST00000192806.1,ENSMUSG00000102680.1	Gm37222	ENSMUSG00000102680.1	ENSMUST00000192806.1	TEC	chrY:4666848-4669808
chrY	5542540	5543047	-	ERVB4_1B-LTR_MM	LTR	ERVK	chrY	5542751	5542753	+	ENSMUST00000184839.1,ENSMUSG00000098514.1	Gm27663	ENSMUSG00000098514.1	ENSMUST00000184839.1	miRNA	chrY:5542752-5542861
chrY	5934528	5935051	+	MURVY-LTR	LTR	ERV1	chrY	5934889	5934891	+	ENSMUST00000189250.1,ENSMUSG00000101291.1	Gm29194	ENSMUSG00000101291.1	ENSMUST00000189250.1	lincRNA	chrY:5934890-5938242
chrY	6220740	6220980	+	MTC	LTR	ERVL-MaLR	chrY	6220974	6220976	+	ENSMUST00000187129.1,ENSMUSG00000101081.1	Gm29193	ENSMUSG00000101081.1	ENSMUST00000187129.1	lincRNA	chrY:6220975-6246362
chrY	6258980	6259502	+	MURVY-LTR	LTR	ERV1	chrY	6259340	6259342	+	ENSMUST00000190989.1,ENSMUSG00000101525.1	Gm28593	ENSMUSG00000101525.1	ENSMUST00000190989.1	lincRNA	chrY:6259341-6262689
chrY	6727312	6727834	-	MURVY-LTR	LTR	ERV1	chrY	6727473	6727475	-	ENSMUST00000190777.1,ENSMUSG00000101388.1	Gm28444	ENSMUSG00000101388.1	ENSMUST00000190777.1	lincRNA	chrY:6724211-6727474
chrY	7382058	7382580	-	MURVY-LTR	LTR	ERV1	chrY	7382219	7382221	-	ENSMUST00000187794.1,ENSMUSG00000100948.1	Gm28395	ENSMUSG00000100948.1	ENSMUST00000187794.1	lincRNA	chrY:7378876-7382220
chrY	7851200	7851722	-	MURVY-LTR	LTR	ERV1	chrY	7851361	7851363	-	ENSMUST00000188922.1,ENSMUSG00000102026.1	Gm28571	ENSMUSG00000102026.1	ENSMUST00000188922.1	lincRNA	chrY:7848018-7851362
chrY	8147225	8147747	-	MURVY-LTR	LTR	ERV1	chrY	8147386	8147388	-	ENSMUST00000188653.1,ENSMUSG00000101229.1	Gm29046	ENSMUSG00000101229.1	ENSMUST00000188653.1	lincRNA	chrY:8144038-8147387
chrY	8989877	8990399	-	MURVY-LTR	LTR	ERV1	chrY	8990038	8990040	-	ENSMUST00000185289.1,ENSMUSG00000100080.1	Gm29364	ENSMUSG00000100080.1	ENSMUST00000185289.1	lincRNA	chrY:8986692-8990039
chrY	10154718	10155239	-	MURVY-LTR	LTR	ERV1	chrY	10154878	10154880	-	ENSMUST00000189428.1,ENSMUSG00000099372.1	Gm28509	ENSMUSG00000099372.1	ENSMUST00000189428.1	lincRNA	chrY:10151537-10154879
chrY	10759965	10760486	-	MURVY-LTR	LTR	ERV1	chrY	10760125	10760127	-	ENSMUST00000188167.1,ENSMUSG00000099482.1	Gm28955	ENSMUSG00000099482.1	ENSMUST00000188167.1	lincRNA	chrY:10756787-10760126
chrY	13920227	13920749	-	MURVY-LTR	LTR	ERV1	chrY	13920388	13920390	-	ENSMUST00000195837.1,ENSMUSG00000103524.1	Gm37263	ENSMUSG00000103524.1	ENSMUST00000195837.1	lincRNA	chrY:13917048-13920389
chrY	14220745	14220924	+	IAPLTR3	LTR	ERVK	chrY	14220903	14220905	+	ENSMUST00000191682.5,ENSMUSG00000102787.5	Gm30174	ENSMUSG00000102787.5	ENSMUST00000191682.5	lincRNA	chrY:14220904-14223183
chrY	14220745	14220924	+	IAPLTR3	LTR	ERVK	chrY	14220903	14220905	+	ENSMUST00000193415.1,ENSMUSG00000102787.5	Gm30174	ENSMUSG00000102787.5	ENSMUST00000193415.1	lincRNA	chrY:14220904-14223183
chrY	14527586	14528099	+	RLTR45	LTR	ERVK	chrY	14528057	14528059	-	ENSMUST00000194704.1,ENSMUSG00000102492.1	Gm36987	ENSMUSG00000102492.1	ENSMUST00000194704.1	TEC	chrY:14525080-14528058
chrY	15444171	15444674	+	Lx2B	LINE	L1	chrY	15444178	15444180	+	ENSMUST00000191723.1,ENSMUSG00000102624.1	Gm37059	ENSMUSG00000102624.1	ENSMUST00000191723.1	lincRNA	chrY:15444179-15445304
chrY	16691140	16698099	-	L1Md_A	LINE	L1	chrY	16697032	16697034	-	ENSMUST00000191652.1,ENSMUSG00000103234.1	Gm37158	ENSMUSG00000103234.1	ENSMUST00000191652.1	TEC	chrY:16691330-16697033
chrY	17866664	17867186	+	MURVY-LTR	LTR	ERV1	chrY	17867024	17867026	+	ENSMUST00000194130.1,ENSMUSG00000102726.1	Gm37937	ENSMUSG00000102726.1	ENSMUST00000194130.1	lincRNA	chrY:17867025-17870364
chrY	17937262	17937369	+	MurSAT1	Satellite	Satellite	chrY	17937329	17937331	-	ENSMUST00000179900.1,ENSMUSG00000096819.1	Srsy	ENSMUSG00000096819.1	ENSMUST00000179900.1	protein_coding	chrY:17935713-17937330
chrY	17957086	17957608	+	MURVY-LTR	LTR	ERV1	chrY	17957446	17957448	+	ENSMUST00000193309.1,ENSMUSG00000103994.1	Gm38028	ENSMUSG00000103994.1	ENSMUST00000193309.1	lincRNA	chrY:17957447-17960787
chrY	18198778	18199293	+	MURVY-LTR	LTR	ERV1	chrY	18199138	18199140	+	ENSMUST00000192127.1,ENSMUSG00000103917.1	Gm38072	ENSMUSG00000103917.1	ENSMUST00000192127.1	lincRNA	chrY:18199139-18202472
chrY	18558847	18558970	+	MER2	DNA	TcMar-Tigger	chrY	18558875	18558877	-	ENSMUST00000193419.1,ENSMUSG00000103871.1	Gm38361	ENSMUSG00000103871.1	ENSMUST00000193419.1	lincRNA	chrY:18557838-18558876
chrY	18632963	18633485	-	MURVY-LTR	LTR	ERV1	chrY	18633124	18633126	-	ENSMUST00000192711.1,ENSMUSG00000104472.1	Gm38209	ENSMUSG00000104472.1	ENSMUST00000192711.1	lincRNA	chrY:18629784-18633125
chrY	18752335	18752857	-	MURVY-LTR	LTR	ERV1	chrY	18752496	18752498	-	ENSMUST00000192846.1,ENSMUSG00000103612.1	Gm37948	ENSMUSG00000103612.1	ENSMUST00000192846.1	lincRNA	chrY:18749156-18752497
chrY	18933004	18933183	+	IAPLTR3	LTR	ERVK	chrY	18933162	18933164	+	ENSMUST00000191625.5,ENSMUSG00000102273.5	Gm34550	ENSMUSG00000102273.5	ENSMUST00000191625.5	lincRNA	chrY:18933163-18935442
chrY	18933004	18933183	+	IAPLTR3	LTR	ERVK	chrY	18933162	18933164	+	ENSMUST00000195186.1,ENSMUSG00000102273.5	Gm34550	ENSMUSG00000102273.5	ENSMUST00000195186.1	lincRNA	chrY:18933163-18935442
chrY	19239908	19240421	+	RLTR45	LTR	ERVK	chrY	19240379	19240381	-	ENSMUST00000195864.1,ENSMUSG00000103796.1	Gm38094	ENSMUSG00000103796.1	ENSMUST00000195864.1	TEC	chrY:19237403-19240380
chrY	20134739	20135243	-	ERVB4_1B-LTR_MM	LTR	ERVK	chrY	20134947	20134949	+	ENSMUST00000184498.1,ENSMUSG00000098966.1	Gm27701	ENSMUSG00000098966.1	ENSMUST00000184498.1	miRNA	chrY:20134948-20135057
chrY	20497353	20497534	+	IAPLTR3	LTR	ERVK	chrY	20497511	20497513	+	ENSMUST00000191807.5,ENSMUSG00000103664.5	Gm36261	ENSMUSG00000103664.5	ENSMUST00000191807.5	lincRNA	chrY:20497512-20499791
chrY	20497353	20497534	+	IAPLTR3	LTR	ERVK	chrY	20497511	20497513	+	ENSMUST00000193323.1,ENSMUSG00000103664.5	Gm36261	ENSMUSG00000103664.5	ENSMUST00000193323.1	lincRNA	chrY:20497512-20499791
chrY	21610135	21610657	+	MURVY-LTR	LTR	ERV1	chrY	21610495	21610497	+	ENSMUST00000192380.1,ENSMUSG00000102146.1	Gm38054	ENSMUSG00000102146.1	ENSMUST00000192380.1	lincRNA	chrY:21610496-21613843
chrY	22144785	22145306	+	MURVY-LTR	LTR	ERV1	chrY	22145144	22145146	+	ENSMUST00000191888.1,ENSMUSG00000103425.1	Gm37075	ENSMUSG00000103425.1	ENSMUST00000191888.1	lincRNA	chrY:22145145-22148488
chrY	22437667	22438189	+	MURVY-LTR	LTR	ERV1	chrY	22438027	22438029	+	ENSMUST00000195425.1,ENSMUSG00000103787.1	Gm37657	ENSMUSG00000103787.1	ENSMUST00000195425.1	lincRNA	chrY:22438028-22441376
chrY	22954990	22955511	+	MURVY-LTR	LTR	ERV1	chrY	22955349	22955351	+	ENSMUST00000192417.1,ENSMUSG00000104259.1	Gm37538	ENSMUSG00000104259.1	ENSMUST00000192417.1	lincRNA	chrY:22955350-22958699
chrY	23792369	23792890	+	MURVY-LTR	LTR	ERV1	chrY	23792728	23792730	+	ENSMUST00000194264.1,ENSMUSG00000102396.1	Gm37574	ENSMUSG00000102396.1	ENSMUST00000194264.1	lincRNA	chrY:23792729-23796073
chrY	24086030	24086550	+	MURVY-LTR	LTR	ERV1	chrY	24086388	24086390	+	ENSMUST00000195205.1,ENSMUSG00000102239.1	Gm38296	ENSMUSG00000102239.1	ENSMUST00000195205.1	lincRNA	chrY:24086389-24089731
chrY	24305875	24306397	+	MURVY-LTR	LTR	ERV1	chrY	24306235	24306237	+	ENSMUST00000192120.1,ENSMUSG00000103236.1	Gm37157	ENSMUSG00000103236.1	ENSMUST00000192120.1	lincRNA	chrY:24306236-24309585
chrY	24819030	24819552	+	MURVY-LTR	LTR	ERV1	chrY	24819390	24819392	+	ENSMUST00000194389.1,ENSMUSG00000104431.1	Gm37112	ENSMUSG00000104431.1	ENSMUST00000194389.1	lincRNA	chrY:24819391-24822739
chrY	25112220	25112742	+	MURVY-LTR	LTR	ERV1	chrY	25112580	25112582	+	ENSMUST00000193277.1,ENSMUSG00000102643.1	Gm37547	ENSMUSG00000102643.1	ENSMUST00000193277.1	lincRNA	chrY:25112581-25115921
chrY	25332142	25332664	+	MURVY-LTR	LTR	ERV1	chrY	25332502	25332504	+	ENSMUST00000194718.1,ENSMUSG00000103982.1	Gm37451	ENSMUSG00000103982.1	ENSMUST00000194718.1	lincRNA	chrY:25332503-25335851
chrY	25845199	25845721	+	MURVY-LTR	LTR	ERV1	chrY	25845559	25845561	+	ENSMUST00000193026.1,ENSMUSG00000104412.1	Gm37798	ENSMUSG00000104412.1	ENSMUST00000193026.1	lincRNA	chrY:25845560-25848910
chrY	26138441	26138963	+	MURVY-LTR	LTR	ERV1	chrY	26138801	26138803	+	ENSMUST00000194775.1,ENSMUSG00000102547.1	Gm38136	ENSMUSG00000102547.1	ENSMUST00000194775.1	lincRNA	chrY:26138802-26142144
chrY	26648089	26648611	+	MURVY-LTR	LTR	ERV1	chrY	26648449	26648451	+	ENSMUST00000186666.1,ENSMUSG00000101809.1	Gm28852	ENSMUSG00000101809.1	ENSMUST00000186666.1	lincRNA	chrY:26648450-26651786
chrY	26871526	26872048	+	MURVY-LTR	LTR	ERV1	chrY	26871886	26871888	+	ENSMUST00000188308.1,ENSMUSG00000101971.1	Gm28246	ENSMUSG00000101971.1	ENSMUST00000188308.1	lincRNA	chrY:26871887-26875234
chrY	27103418	27103940	+	MURVY-LTR	LTR	ERV1	chrY	27103778	27103780	+	ENSMUST00000187025.1,ENSMUSG00000101311.1	Gm28250	ENSMUSG00000101311.1	ENSMUST00000187025.1	lincRNA	chrY:27103779-27107127
chrY	27393177	27393699	+	MURVY-LTR	LTR	ERV1	chrY	27393537	27393539	+	ENSMUST00000190161.1,ENSMUSG00000099955.1	Gm28880	ENSMUSG00000099955.1	ENSMUST00000190161.1	lincRNA	chrY:27393538-27396874
chrY	27616635	27617157	+	MURVY-LTR	LTR	ERV1	chrY	27616995	27616997	+	ENSMUST00000188272.1,ENSMUSG00000099430.1	Gm28878	ENSMUSG00000099430.1	ENSMUST00000188272.1	lincRNA	chrY:27616996-27620343
chrY	28142787	28143309	+	MURVY-LTR	LTR	ERV1	chrY	28143147	28143149	+	ENSMUST00000186372.1,ENSMUSG00000101484.1	Gm28798	ENSMUSG00000101484.1	ENSMUST00000186372.1	lincRNA	chrY:28143148-28146485
chrY	28911253	28911434	-	IAPLTR3	LTR	ERVK	chrY	28911275	28911277	-	ENSMUST00000191071.6,ENSMUSG00000100875.6	Gm28987	ENSMUSG00000100875.6	ENSMUST00000191071.6	lincRNA	chrY:28908997-28911276
chrY	28911253	28911434	-	IAPLTR3	LTR	ERVK	chrY	28911275	28911277	-	ENSMUST00000191374.1,ENSMUSG00000100875.6	Gm28987	ENSMUSG00000100875.6	ENSMUST00000191374.1	lincRNA	chrY:28908997-28911276
chrY	28994446	28995008	+	Lx2B	LINE	L1	chrY	28994507	28994509	+	ENSMUST00000189682.1,ENSMUSG00000100117.1	Gm28986	ENSMUSG00000100117.1	ENSMUST00000189682.1	lincRNA	chrY:28994508-28995633
chrY	29156637	29156818	+	IAPLTR3	LTR	ERVK	chrY	29156795	29156797	+	ENSMUST00000186273.6,ENSMUSG00000099650.6	Gm28129	ENSMUSG00000099650.6	ENSMUST00000186273.6	lincRNA	chrY:29156796-29159075
chrY	29156637	29156818	+	IAPLTR3	LTR	ERVK	chrY	29156795	29156797	+	ENSMUST00000187670.1,ENSMUSG00000099650.6	Gm28129	ENSMUSG00000099650.6	ENSMUST00000187670.1	lincRNA	chrY:29156796-29159075
chrY	30310640	30311178	-	Lx2B	LINE	L1	chrY	30311113	30311115	-	ENSMUST00000188613.1,ENSMUSG00000100896.1	Gm28217	ENSMUSG00000100896.1	ENSMUST00000188613.1	lincRNA	chrY:30310104-30311114
chrY	30946055	30946236	-	IAPLTR3	LTR	ERVK	chrY	30946077	30946079	-	ENSMUST00000188809.6,ENSMUSG00000099990.6	Gm29578	ENSMUSG00000099990.6	ENSMUST00000188809.6	lincRNA	chrY:30943800-30946078
chrY	30946055	30946236	-	IAPLTR3	LTR	ERVK	chrY	30946077	30946079	-	ENSMUST00000190180.1,ENSMUSG00000099990.6	Gm29578	ENSMUSG00000099990.6	ENSMUST00000190180.1	lincRNA	chrY:30943800-30946078
chrY	31842267	31842448	-	IAPLTR3	LTR	ERVK	chrY	31842289	31842291	-	ENSMUST00000190933.6,ENSMUSG00000101761.6	Gm28297	ENSMUSG00000101761.6	ENSMUST00000190933.6	lincRNA	chrY:31840012-31842290
chrY	31842267	31842448	-	IAPLTR3	LTR	ERVK	chrY	31842289	31842291	-	ENSMUST00000186679.1,ENSMUSG00000101761.6	Gm28297	ENSMUSG00000101761.6	ENSMUST00000186679.1	lincRNA	chrY:31840012-31842290
chrY	32819276	32819457	-	IAPLTR3	LTR	ERVK	chrY	32819298	32819300	-	ENSMUST00000189752.6,ENSMUSG00000101728.6	Gm28765	ENSMUSG00000101728.6	ENSMUST00000189752.6	lincRNA	chrY:32817021-32819299
chrY	32819276	32819457	-	IAPLTR3	LTR	ERVK	chrY	32819298	32819300	-	ENSMUST00000190380.1,ENSMUSG00000101728.6	Gm28765	ENSMUSG00000101728.6	ENSMUST00000190380.1	lincRNA	chrY:32817021-32819299
chrY	33742466	33742647	-	IAPLTR3	LTR	ERVK	chrY	33742488	33742490	-	ENSMUST00000190561.6,ENSMUSG00000101681.6	Gm28522	ENSMUSG00000101681.6	ENSMUST00000190561.6	lincRNA	chrY:33740211-33742489
chrY	33742466	33742647	-	IAPLTR3	LTR	ERVK	chrY	33742488	33742490	-	ENSMUST00000185908.1,ENSMUSG00000101681.6	Gm28522	ENSMUSG00000101681.6	ENSMUST00000185908.1	lincRNA	chrY:33740211-33742489
chrY	34410555	34411077	+	MURVY-LTR	LTR	ERV1	chrY	34410915	34410917	+	ENSMUST00000186886.1,ENSMUSG00000101808.1	Gm29654	ENSMUSG00000101808.1	ENSMUST00000186886.1	lincRNA	chrY:34410916-34414265
chrY	34704980	34705502	+	MURVY-LTR	LTR	ERV1	chrY	34705340	34705342	+	ENSMUST00000185784.1,ENSMUSG00000100745.1	Gm29077	ENSMUSG00000100745.1	ENSMUST00000185784.1	lincRNA	chrY:34705341-34708688
chrY	34998737	34999259	+	MURVY-LTR	LTR	ERV1	chrY	34999097	34999099	+	ENSMUST00000186871.1,ENSMUSG00000100422.1	Gm29226	ENSMUSG00000100422.1	ENSMUST00000186871.1	lincRNA	chrY:34999098-35002441
chrY	35225529	35226050	+	MURVY-LTR	LTR	ERV1	chrY	35225888	35225890	+	ENSMUST00000190852.1,ENSMUSG00000101091.1	Gm29384	ENSMUSG00000101091.1	ENSMUST00000190852.1	lincRNA	chrY:35225889-35229236
chrY	36015365	36015886	+	MURVY-LTR	LTR	ERV1	chrY	36015724	36015726	+	ENSMUST00000186374.1,ENSMUSG00000100034.1	Gm28469	ENSMUSG00000100034.1	ENSMUST00000186374.1	lincRNA	chrY:36015725-36019070
chrY	36308040	36308562	+	MURVY-LTR	LTR	ERV1	chrY	36308400	36308402	+	ENSMUST00000186034.1,ENSMUSG00000101781.1	Gm28333	ENSMUSG00000101781.1	ENSMUST00000186034.1	lincRNA	chrY:36308401-36311744
chrY	36830180	36830702	+	MURVY-LTR	LTR	ERV1	chrY	36830540	36830542	+	ENSMUST00000186297.1,ENSMUSG00000101815.1	Gm29028	ENSMUSG00000101815.1	ENSMUST00000186297.1	lincRNA	chrY:36830541-36833887
chrY	36935583	36936105	+	MURVY-LTR	LTR	ERV1	chrY	36935943	36935945	+	ENSMUST00000186756.1,ENSMUSG00000099832.1	Gm29025	ENSMUSG00000099832.1	ENSMUST00000186756.1	lincRNA	chrY:36935944-36939282
chrY	37808476	37808998	+	MURVY-LTR	LTR	ERV1	chrY	37808836	37808838	+	ENSMUST00000189438.1,ENSMUSG00000099601.1	Gm29671	ENSMUSG00000099601.1	ENSMUST00000189438.1	lincRNA	chrY:37808837-37812183
chrY	38101862	38102384	+	MURVY-LTR	LTR	ERV1	chrY	38102222	38102224	+	ENSMUST00000186357.1,ENSMUSG00000099730.1	Gm28547	ENSMUSG00000099730.1	ENSMUST00000186357.1	lincRNA	chrY:38102223-38105565
chrY	38376138	38376660	+	MURVY-LTR	LTR	ERV1	chrY	38376498	38376500	+	ENSMUST00000189554.1,ENSMUSG00000101435.1	Gm28772	ENSMUSG00000101435.1	ENSMUST00000189554.1	lincRNA	chrY:38376499-38379839
chrY	38595857	38596378	+	MURVY-LTR	LTR	ERV1	chrY	38596216	38596218	+	ENSMUST00000186918.1,ENSMUSG00000099793.1	Gm28775	ENSMUSG00000099793.1	ENSMUST00000186918.1	lincRNA	chrY:38596217-38599560
chrY	38937360	38937541	-	IAPLTR3	LTR	ERVK	chrY	38937382	38937384	-	ENSMUST00000185625.6,ENSMUSG00000101740.6	Gm29360	ENSMUSG00000101740.6	ENSMUST00000185625.6	lincRNA	chrY:38935104-38937383
chrY	38937360	38937541	-	IAPLTR3	LTR	ERVK	chrY	38937382	38937384	-	ENSMUST00000191555.1,ENSMUSG00000101740.6	Gm29360	ENSMUSG00000101740.6	ENSMUST00000191555.1	lincRNA	chrY:38935104-38937383
chrY	39411662	39411878	+	IAPLTR3	LTR	ERVK	chrY	39411820	39411822	+	ENSMUST00000186449.6,ENSMUSG00000101040.6	Gm29498	ENSMUSG00000101040.6	ENSMUST00000186449.6	lincRNA	chrY:39411821-39414100
chrY	39411662	39411878	+	IAPLTR3	LTR	ERVK	chrY	39411820	39411822	+	ENSMUST00000188911.1,ENSMUSG00000101040.6	Gm29498	ENSMUSG00000101040.6	ENSMUST00000188911.1	lincRNA	chrY:39411821-39414100
chrY	40188853	40189363	-	RLTR45	LTR	ERVK	chrY	40188894	40188896	+	ENSMUST00000194882.1,ENSMUSG00000104381.1	Gm37032	ENSMUSG00000104381.1	ENSMUST00000194882.1	TEC	chrY:40188895-40191869
chrY	40496746	40496925	-	IAPLTR3	LTR	ERVK	chrY	40496766	40496768	-	ENSMUST00000187191.6,ENSMUSG00000100508.6	Gm28617	ENSMUSG00000100508.6	ENSMUST00000187191.6	lincRNA	chrY:40494488-40496767
chrY	40496746	40496925	-	IAPLTR3	LTR	ERVK	chrY	40496766	40496768	-	ENSMUST00000190129.1,ENSMUSG00000100508.6	Gm28617	ENSMUSG00000100508.6	ENSMUST00000190129.1	lincRNA	chrY:40494488-40496767
chrY	40683972	40684490	-	ERVB4_1B-LTR_MM	LTR	ERVK	chrY	40684180	40684182	+	ENSMUST00000184396.1,ENSMUSG00000098868.1	Gm27466	ENSMUSG00000098868.1	ENSMUST00000184396.1	miRNA	chrY:40684181-40684290
chrY	40688529	40689047	-	ERVB4_1B-LTR_MM	LTR	ERVK	chrY	40688737	40688739	+	ENSMUST00000103869.3,ENSMUSG00000099228.1	Gm28018	ENSMUSG00000099228.1	ENSMUST00000103869.3	miRNA	chrY:40688738-40688847
chrY	41385616	41386131	-	MURVY-LTR	LTR	ERV1	chrY	41385770	41385772	-	ENSMUST00000190144.1,ENSMUSG00000099628.1	Gm28427	ENSMUSG00000099628.1	ENSMUST00000190144.1	lincRNA	chrY:41382437-41385771
chrY	41769089	41769270	-	IAPLTR3	LTR	ERVK	chrY	41769111	41769113	-	ENSMUST00000190714.5,ENSMUSG00000101536.6	Gm28834	ENSMUSG00000101536.6	ENSMUST00000190714.5	lincRNA	chrY:41766834-41769112
chrY	41769089	41769270	-	IAPLTR3	LTR	ERVK	chrY	41769111	41769113	-	ENSMUST00000187847.2,ENSMUSG00000101536.6	Gm28834	ENSMUSG00000101536.6	ENSMUST00000187847.2	lincRNA	chrY:41766834-41769112
chrY	43802941	43803122	+	IAPLTR3	LTR	ERVK	chrY	43803099	43803101	+	ENSMUST00000187736.6,ENSMUSG00000099977.6	Gm29286	ENSMUSG00000099977.6	ENSMUST00000187736.6	lincRNA	chrY:43803100-43805379
chrY	43802941	43803122	+	IAPLTR3	LTR	ERVK	chrY	43803099	43803101	+	ENSMUST00000186707.1,ENSMUSG00000099977.6	Gm29286	ENSMUSG00000099977.6	ENSMUST00000186707.1	lincRNA	chrY:43803100-43805379
chrY	44388168	44388349	-	IAPLTR3	LTR	ERVK	chrY	44388190	44388192	-	ENSMUST00000186564.6,ENSMUSG00000102031.6	Gm29426	ENSMUSG00000102031.6	ENSMUST00000186564.6	lincRNA	chrY:44385913-44388191
chrY	44388168	44388349	-	IAPLTR3	LTR	ERVK	chrY	44388190	44388192	-	ENSMUST00000185613.1,ENSMUSG00000102031.6	Gm29426	ENSMUSG00000102031.6	ENSMUST00000185613.1	lincRNA	chrY:44385913-44388191
chrY	44827377	44827537	-	MTC	LTR	ERVL-MaLR	chrY	44827382	44827384	-	ENSMUST00000186065.1,ENSMUSG00000102116.1	Gm28887	ENSMUSG00000102116.1	ENSMUST00000186065.1	lincRNA	chrY:44818410-44827383
chrY	46348184	46348687	-	Lx2B	LINE	L1	chrY	46348680	46348682	-	ENSMUST00000188651.1,ENSMUSG00000100628.1	Gm29648	ENSMUSG00000100628.1	ENSMUST00000188651.1	lincRNA	chrY:46347584-46348681
chrY	47252008	47252189	+	IAPLTR3	LTR	ERVK	chrY	47252166	47252168	+	ENSMUST00000186615.6,ENSMUSG00000099789.6	Gm28565	ENSMUSG00000099789.6	ENSMUST00000186615.6	lincRNA	chrY:47252167-47254445
chrY	47252008	47252189	+	IAPLTR3	LTR	ERVK	chrY	47252166	47252168	+	ENSMUST00000185875.1,ENSMUSG00000099789.6	Gm28565	ENSMUSG00000099789.6	ENSMUST00000185875.1	lincRNA	chrY:47252167-47254445
chrY	48185578	48185759	+	IAPLTR3	LTR	ERVK	chrY	48185736	48185738	+	ENSMUST00000186716.6,ENSMUSG00000099674.6	Gm29166	ENSMUSG00000099674.6	ENSMUST00000186716.6	lincRNA	chrY:48185737-48188014
chrY	48185578	48185759	+	IAPLTR3	LTR	ERVK	chrY	48185736	48185738	+	ENSMUST00000189600.1,ENSMUSG00000099674.6	Gm29166	ENSMUSG00000099674.6	ENSMUST00000189600.1	lincRNA	chrY:48185737-48188014
chrY	49476999	49477520	-	MURVY-LTR	LTR	ERV1	chrY	49477160	49477162	-	ENSMUST00000188071.1,ENSMUSG00000100970.1	Gm29270	ENSMUSG00000100970.1	ENSMUST00000188071.1	lincRNA	chrY:49473820-49477161
chrY	49700404	49700926	-	MURVY-LTR	LTR	ERV1	chrY	49700565	49700567	-	ENSMUST00000187387.1,ENSMUSG00000100206.1	Gm28681	ENSMUSG00000100206.1	ENSMUST00000187387.1	lincRNA	chrY:49697224-49700566
chrY	51254451	51254973	-	MURVY-LTR	LTR	ERV1	chrY	51254612	51254614	-	ENSMUST00000187200.1,ENSMUSG00000099985.1	Gm28317	ENSMUSG00000099985.1	ENSMUST00000187200.1	lincRNA	chrY:51251272-51254613
chrY	51463271	51463793	-	MURVY-LTR	LTR	ERV1	chrY	51463432	51463434	-	ENSMUST00000189948.1,ENSMUSG00000101222.1	Gm28315	ENSMUSG00000101222.1	ENSMUST00000189948.1	lincRNA	chrY:51460090-51463433
chrY	51756756	51757278	-	MURVY-LTR	LTR	ERV1	chrY	51756917	51756919	-	ENSMUST00000187780.1,ENSMUSG00000100820.1	Gm28945	ENSMUSG00000100820.1	ENSMUST00000187780.1	lincRNA	chrY:51753580-51756918
chrY	51981609	51982131	-	MURVY-LTR	LTR	ERV1	chrY	51981770	51981772	-	ENSMUST00000188447.1,ENSMUSG00000100461.1	Gm28948	ENSMUSG00000100461.1	ENSMUST00000188447.1	lincRNA	chrY:51978428-51981771
chrY	52342359	52342881	+	MURVY-LTR	LTR	ERV1	chrY	52342719	52342721	+	ENSMUST00000190236.1,ENSMUSG00000099559.1	Gm29063	ENSMUSG00000099559.1	ENSMUST00000190236.1	lincRNA	chrY:52342720-52346062
chrY	52908335	52908857	-	MURVY-LTR	LTR	ERV1	chrY	52908496	52908498	-	ENSMUST00000189632.1,ENSMUSG00000099506.1	Gm28732	ENSMUSG00000099506.1	ENSMUST00000189632.1	lincRNA	chrY:52905155-52908497
chrY	53147440	53149428	-	MuRRS4-int	LTR	ERV1	chrY	53148053	53148055	-	ENSMUST00000185828.1,ENSMUSG00000101885.1	Gm28235	ENSMUSG00000101885.1	ENSMUST00000185828.1	lincRNA	chrY:53146640-53148054
chrY	53495352	53495873	-	MURVY-LTR	LTR	ERV1	chrY	53495513	53495515	-	ENSMUST00000189869.1,ENSMUSG00000101547.1	Gm29252	ENSMUSG00000101547.1	ENSMUST00000189869.1	lincRNA	chrY:53492167-53495514
chrY	53968740	53969262	-	MURVY-LTR	LTR	ERV1	chrY	53968901	53968903	-	ENSMUST00000188508.1,ENSMUSG00000101566.1	Gm28276	ENSMUSG00000101566.1	ENSMUST00000188508.1	lincRNA	chrY:53965560-53968902
chrY	54565595	54566116	-	MURVY-LTR	LTR	ERV1	chrY	54565756	54565758	-	ENSMUST00000191054.1,ENSMUSG00000100089.1	Gm29305	ENSMUSG00000100089.1	ENSMUST00000191054.1	lincRNA	chrY:54562411-54565757
chrY	54929015	54929104	-	5S	rRNA	rRNA	chrY	54929103	54929105	-	ENSMUST00000178633.1,ENSMUSG00000095985.1	Gm23052	ENSMUSG00000095985.1	ENSMUST00000178633.1	rRNA	chrY:54928997-54929104
chrY	55634009	55634531	-	MURVY-LTR	LTR	ERV1	chrY	55634170	55634172	-	ENSMUST00000186654.1,ENSMUSG00000099442.1	Gm28352	ENSMUSG00000099442.1	ENSMUST00000186654.1	lincRNA	chrY:55630825-55634171
chrY	55800971	55801493	-	MURVY-LTR	LTR	ERV1	chrY	55801132	55801134	-	ENSMUST00000189989.1,ENSMUSG00000101580.1	Gm28201	ENSMUSG00000101580.1	ENSMUST00000189989.1	lincRNA	chrY:55797791-55801133
chrY	56094587	56095109	-	MURVY-LTR	LTR	ERV1	chrY	56094748	56094750	-	ENSMUST00000190437.1,ENSMUSG00000100242.1	Gm28206	ENSMUSG00000100242.1	ENSMUST00000190437.1	lincRNA	chrY:56091402-56094749
chrY	56400136	56400656	-	MURVY-LTR	LTR	ERV1	chrY	56400296	56400298	-	ENSMUST00000185442.1,ENSMUSG00000101021.1	Gm29222	ENSMUSG00000101021.1	ENSMUST00000185442.1	lincRNA	chrY:56396951-56400297
chrY	56420127	56420292	-	MurSAT1	Satellite	Satellite	chrY	56420275	56420277	+	ENSMUST00000186092.1,ENSMUSG00000099485.1	Gm29221	ENSMUSG00000099485.1	ENSMUST00000186092.1	lincRNA	chrY:56420276-56429767
chrY	57354170	57354410	-	MTC	LTR	ERVL-MaLR	chrY	57354174	57354176	-	ENSMUST00000186967.1,ENSMUSG00000100578.1	Gm28709	ENSMUSG00000100578.1	ENSMUST00000186967.1	lincRNA	chrY:57343729-57354175
chrY	58082676	58082857	-	IAPLTR3	LTR	ERVK	chrY	58082698	58082700	-	ENSMUST00000187577.1,ENSMUSG00000100083.6	Gm29467	ENSMUSG00000100083.6	ENSMUST00000187577.1	lincRNA	chrY:58080422-58082699
chrY	59087363	59087544	-	IAPLTR3	LTR	ERVK	chrY	59087385	59087387	-	ENSMUST00000190486.6,ENSMUSG00000099551.6	Gm28072	ENSMUSG00000099551.6	ENSMUST00000190486.6	processed_transcript	chrY:59085108-59087386
chrY	59087363	59087544	-	IAPLTR3	LTR	ERVK	chrY	59087385	59087387	-	ENSMUST00000186521.1,ENSMUSG00000099551.6	Gm28072	ENSMUSG00000099551.6	ENSMUST00000186521.1	processed_transcript	chrY:59085108-59087386
chrY	60114921	60115102	+	IAPLTR3	LTR	ERVK	chrY	60115079	60115081	+	ENSMUST00000186829.6,ENSMUSG00000099866.6	Gm28889	ENSMUSG00000099866.6	ENSMUST00000186829.6	lincRNA	chrY:60115080-60117357
chrY	60114921	60115102	+	IAPLTR3	LTR	ERVK	chrY	60115079	60115081	+	ENSMUST00000185350.1,ENSMUSG00000099866.6	Gm28889	ENSMUSG00000099866.6	ENSMUST00000185350.1	lincRNA	chrY:60115080-60117779
chrY	61583926	61584166	-	MTC	LTR	ERVL-MaLR	chrY	61583930	61583932	-	ENSMUST00000189321.1,ENSMUSG00000099865.1	Gm29206	ENSMUSG00000099865.1	ENSMUST00000189321.1	lincRNA	chrY:61556222-61583931
chrY	61776283	61776805	-	MURVY-LTR	LTR	ERV1	chrY	61776444	61776446	-	ENSMUST00000191490.1,ENSMUSG00000100606.1	Gm29612	ENSMUSG00000100606.1	ENSMUST00000191490.1	lincRNA	chrY:61773101-61776445
chrY	61815117	61815357	-	MTC	LTR	ERVL-MaLR	chrY	61815121	61815123	-	ENSMUST00000187887.1,ENSMUSG00000101170.1	Gm29343	ENSMUSG00000101170.1	ENSMUST00000187887.1	lincRNA	chrY:61789649-61815122
chrY	62885356	62885596	-	MTC	LTR	ERVL-MaLR	chrY	62885361	62885363	-	ENSMUST00000188176.1,ENSMUSG00000101182.1	Gm29209	ENSMUSG00000101182.1	ENSMUST00000188176.1	lincRNA	chrY:62874899-62885362
chrY	63691002	63691242	-	MTC	LTR	ERVL-MaLR	chrY	63691007	63691009	-	ENSMUST00000185339.1,ENSMUSG00000101119.1	Gm29060	ENSMUSG00000101119.1	ENSMUST00000185339.1	lincRNA	chrY:63680536-63691008
chrY	64377889	64378411	-	MURVY-LTR	LTR	ERV1	chrY	64378050	64378052	-	ENSMUST00000190914.1,ENSMUSG00000100329.1	Gm29622	ENSMUSG00000100329.1	ENSMUST00000190914.1	lincRNA	chrY:64374713-64378051
chrY	64939110	64939632	+	MURVY-LTR	LTR	ERV1	chrY	64939470	64939472	+	ENSMUST00000189207.1,ENSMUSG00000101569.1	Gm28254	ENSMUSG00000101569.1	ENSMUST00000189207.1	lincRNA	chrY:64939471-64942813
chrY	65505995	65506517	-	MURVY-LTR	LTR	ERV1	chrY	65506156	65506158	-	ENSMUST00000189366.1,ENSMUSG00000100333.1	Gm28561	ENSMUSG00000100333.1	ENSMUST00000189366.1	lincRNA	chrY:65502815-65506157
chrY	65799536	65800057	-	MURVY-LTR	LTR	ERV1	chrY	65799697	65799699	-	ENSMUST00000188690.1,ENSMUSG00000099778.1	Gm28134	ENSMUSG00000099778.1	ENSMUST00000188690.1	lincRNA	chrY:65796354-65799698
chrY	66113775	66114296	+	MURVY-LTR	LTR	ERV1	chrY	66114134	66114136	+	ENSMUST00000186250.1,ENSMUSG00000099395.1	Gm28138	ENSMUSG00000099395.1	ENSMUST00000186250.1	lincRNA	chrY:66114135-66117482
chrY	66522872	66523394	-	MURVY-LTR	LTR	ERV1	chrY	66523033	66523035	-	ENSMUST00000186305.1,ENSMUSG00000100607.1	Gm29379	ENSMUSG00000100607.1	ENSMUST00000186305.1	lincRNA	chrY:66519692-66523034
chrY	67503261	67503783	+	MURVY-LTR	LTR	ERV1	chrY	67503621	67503623	+	ENSMUST00000190335.1,ENSMUSG00000100478.1	Gm29632	ENSMUSG00000100478.1	ENSMUST00000190335.1	lincRNA	chrY:67503622-67506965
chrY	67675098	67675338	+	MTC	LTR	ERVL-MaLR	chrY	67675332	67675334	+	ENSMUST00000185207.1,ENSMUSG00000099716.1	Gm29082	ENSMUSG00000099716.1	ENSMUST00000185207.1	lincRNA	chrY:67675333-67685792
chrY	67716071	67716593	+	MURVY-LTR	LTR	ERV1	chrY	67716431	67716433	+	ENSMUST00000188149.1,ENSMUSG00000101529.1	Gm29636	ENSMUSG00000101529.1	ENSMUST00000188149.1	lincRNA	chrY:67716432-67719778
chrY	68165260	68165782	+	MURVY-LTR	LTR	ERV1	chrY	68165620	68165622	+	ENSMUST00000185631.1,ENSMUSG00000099991.1	Gm29660	ENSMUSG00000099991.1	ENSMUST00000185631.1	lincRNA	chrY:68165621-68168964
chrY	68388609	68389130	+	MURVY-LTR	LTR	ERV1	chrY	68388968	68388970	+	ENSMUST00000187820.1,ENSMUSG00000101598.1	Gm29449	ENSMUSG00000101598.1	ENSMUST00000187820.1	lincRNA	chrY:68388969-68392312
chrY	68702495	68703017	+	MURVY-LTR	LTR	ERV1	chrY	68702855	68702857	+	ENSMUST00000190887.1,ENSMUSG00000100885.1	Gm29446	ENSMUSG00000100885.1	ENSMUST00000190887.1	lincRNA	chrY:68702856-68706197
chrY	69769710	69770232	-	MURVY-LTR	LTR	ERV1	chrY	69769871	69769873	-	ENSMUST00000187496.1,ENSMUSG00000100971.1	Gm28824	ENSMUSG00000100971.1	ENSMUST00000187496.1	lincRNA	chrY:69766529-69769872
chrY	70563310	70563832	-	MURVY-LTR	LTR	ERV1	chrY	70563471	70563473	-	ENSMUST00000185592.1,ENSMUSG00000101706.1	Gm28431	ENSMUSG00000101706.1	ENSMUST00000185592.1	lincRNA	chrY:70560130-70563472
chrY	71086381	71086903	-	MURVY-LTR	LTR	ERV1	chrY	71086542	71086544	-	ENSMUST00000189579.1,ENSMUSG00000101893.1	Gm28839	ENSMUSG00000101893.1	ENSMUST00000189579.1	lincRNA	chrY:71083196-71086543
chrY	71636629	71636869	-	MTC	LTR	ERVL-MaLR	chrY	71636634	71636636	-	ENSMUST00000189350.1,ENSMUSG00000101134.1	Gm28482	ENSMUSG00000101134.1	ENSMUST00000189350.1	lincRNA	chrY:71626238-71636635
chrY	74749158	74749247	-	5S	rRNA	rRNA	chrY	74749246	74749248	-	ENSMUST00000178022.1,ENSMUSG00000093946.1	Gm22832	ENSMUSG00000093946.1	ENSMUST00000178022.1	rRNA	chrY:74749140-74749247
chrY	74910873	74910962	-	5S	rRNA	rRNA	chrY	74910961	74910963	-	ENSMUST00000179315.1,ENSMUSG00000094654.1	Gm25359	ENSMUSG00000094654.1	ENSMUST00000179315.1	rRNA	chrY:74910855-74910962
chrY	77448104	77448626	-	MURVY-LTR	LTR	ERV1	chrY	77448265	77448267	-	ENSMUST00000186251.1,ENSMUSG00000100526.1	Gm29309	ENSMUSG00000100526.1	ENSMUST00000186251.1	lincRNA	chrY:77444923-77448266
chrY	77609139	77609661	-	MURVY-LTR	LTR	ERV1	chrY	77609300	77609302	-	ENSMUST00000186589.1,ENSMUSG00000100823.1	Gm28704	ENSMUSG00000100823.1	ENSMUST00000186589.1	lincRNA	chrY:77605955-77609301
chrY	77821942	77822464	-	MURVY-LTR	LTR	ERV1	chrY	77822103	77822105	-	ENSMUST00000190919.1,ENSMUSG00000100063.1	Gm28538	ENSMUSG00000100063.1	ENSMUST00000190919.1	lincRNA	chrY:77818761-77822104
chrY	78157499	78157739	-	MTC	LTR	ERVL-MaLR	chrY	78157504	78157506	-	ENSMUST00000190627.1,ENSMUSG00000102111.1	Gm29566	ENSMUSG00000102111.1	ENSMUST00000190627.1	lincRNA	chrY:78147088-78157505
chrY	78328473	78328995	-	MURVY-LTR	LTR	ERV1	chrY	78328634	78328636	-	ENSMUST00000188904.1,ENSMUSG00000099479.1	Gm29146	ENSMUSG00000099479.1	ENSMUST00000188904.1	lincRNA	chrY:78325294-78328635
chrY	78367273	78367513	-	MTC	LTR	ERVL-MaLR	chrY	78367278	78367280	-	ENSMUST00000186118.1,ENSMUSG00000101115.1	Gm28664	ENSMUSG00000101115.1	ENSMUST00000186118.1	lincRNA	chrY:78356809-78367279
chrY	78657484	78657724	-	MTC	LTR	ERVL-MaLR	chrY	78657489	78657491	-	ENSMUST00000187598.1,ENSMUSG00000101321.1	Gm28817	ENSMUSG00000101321.1	ENSMUST00000187598.1	lincRNA	chrY:78632526-78657490
chrY	80244351	80244873	-	MURVY-LTR	LTR	ERV1	chrY	80244512	80244514	-	ENSMUST00000187675.1,ENSMUSG00000101981.1	Gm28157	ENSMUSG00000101981.1	ENSMUST00000187675.1	lincRNA	chrY:80241172-80244513
chrY	80539592	80540114	-	MURVY-LTR	LTR	ERV1	chrY	80539753	80539755	-	ENSMUST00000189187.1,ENSMUSG00000100286.1	Gm28696	ENSMUSG00000100286.1	ENSMUST00000189187.1	lincRNA	chrY:80536406-80539754
chrY	80832723	80833244	-	MURVY-LTR	LTR	ERV1	chrY	80832884	80832886	-	ENSMUST00000189604.1,ENSMUSG00000100925.1	Gm28898	ENSMUSG00000100925.1	ENSMUST00000189604.1	lincRNA	chrY:80829542-80832885
chrY	81878598	81879119	-	MURVY-LTR	LTR	ERV1	chrY	81878759	81878761	-	ENSMUST00000189014.1,ENSMUSG00000100879.1	Gm28743	ENSMUSG00000100879.1	ENSMUST00000189014.1	lincRNA	chrY:81875412-81878760
chrY	82350026	82350536	-	MURVY-LTR	LTR	ERV1	chrY	82350187	82350189	-	ENSMUST00000188599.1,ENSMUSG00000101907.1	Gm29472	ENSMUSG00000101907.1	ENSMUST00000188599.1	lincRNA	chrY:82346845-82350188
chrY	82643676	82644198	-	MURVY-LTR	LTR	ERV1	chrY	82643837	82643839	-	ENSMUST00000186916.1,ENSMUSG00000101329.1	Gm28226	ENSMUSG00000101329.1	ENSMUST00000186916.1	lincRNA	chrY:82640490-82643838
chrY	83675360	83675449	-	5S	rRNA	rRNA	chrY	83675448	83675450	-	ENSMUST00000179050.1,ENSMUSG00000096523.1	Gm25729	ENSMUSG00000096523.1	ENSMUST00000179050.1	rRNA	chrY:83675342-83675449
chrY	83812606	83812695	-	5S	rRNA	rRNA	chrY	83812694	83812696	-	ENSMUST00000179913.1,ENSMUSG00000094454.1	Gm22624	ENSMUSG00000094454.1	ENSMUST00000179913.1	rRNA	chrY:83812588-83812695
chrY	84875322	84875844	-	MURVY-LTR	LTR	ERV1	chrY	84875483	84875485	-	ENSMUST00000186123.1,ENSMUSG00000101405.1	Gm28758	ENSMUSG00000101405.1	ENSMUST00000186123.1	lincRNA	chrY:84872139-84875484
chrY	85244462	85244984	-	MURVY-LTR	LTR	ERV1	chrY	85244623	85244625	-	ENSMUST00000186990.1,ENSMUSG00000102127.1	Gm28972	ENSMUSG00000102127.1	ENSMUST00000186990.1	lincRNA	chrY:85241278-85244624
chrY	85272951	85273474	-	MURVY-LTR	LTR	ERV1	chrY	85273113	85273115	-	ENSMUST00000191098.1,ENSMUSG00000099362.1	Gm28970	ENSMUSG00000099362.1	ENSMUST00000191098.1	lincRNA	chrY:85270801-85273114
chrY	85414036	85414125	-	5S	rRNA	rRNA	chrY	85414124	85414126	-	ENSMUST00000178507.1,ENSMUSG00000095705.1	Gm24828	ENSMUSG00000095705.1	ENSMUST00000178507.1	rRNA	chrY:85414018-85414125
chrY	85604994	85605516	-	MURVY-LTR	LTR	ERV1	chrY	85605155	85605157	-	ENSMUST00000189021.1,ENSMUSG00000101989.1	Gm28346	ENSMUSG00000101989.1	ENSMUST00000189021.1	lincRNA	chrY:85601810-85605156
chrY	85633443	85633966	-	MURVY-LTR	LTR	ERV1	chrY	85633605	85633607	-	ENSMUST00000188769.1,ENSMUSG00000100288.1	Gm28345	ENSMUSG00000100288.1	ENSMUST00000188769.1	lincRNA	chrY:85631293-85633606
chrY	85672239	85672479	-	MTC	LTR	ERVL-MaLR	chrY	85672244	85672246	-	ENSMUST00000188526.1,ENSMUSG00000099341.1	Gm29090	ENSMUSG00000099341.1	ENSMUST00000188526.1	lincRNA	chrY:85661766-85672245
chrY	85774460	85774549	-	5S	rRNA	rRNA	chrY	85774548	85774550	-	ENSMUST00000178009.1,ENSMUSG00000094937.1	Gm23770	ENSMUSG00000094937.1	ENSMUST00000178009.1	rRNA	chrY:85774442-85774549
chrY	85965318	85965840	-	MURVY-LTR	LTR	ERV1	chrY	85965479	85965481	-	ENSMUST00000188540.1,ENSMUSG00000102061.1	Gm28823	ENSMUSG00000102061.1	ENSMUST00000188540.1	lincRNA	chrY:85962134-85965480
chrY	86326035	86326124	-	5S	rRNA	rRNA	chrY	86326123	86326125	-	ENSMUST00000178265.1,ENSMUSG00000093928.1	Gm23863	ENSMUSG00000093928.1	ENSMUST00000178265.1	rRNA	chrY:86326017-86326124
chrY	86509357	86509879	-	MURVY-LTR	LTR	ERV1	chrY	86509518	86509520	-	ENSMUST00000187209.1,ENSMUSG00000100817.1	Gm29302	ENSMUSG00000100817.1	ENSMUST00000187209.1	lincRNA	chrY:86506173-86509519
chrY	86730619	86731142	-	MURVY-LTR	LTR	ERV1	chrY	86730780	86730782	-	ENSMUST00000187289.1,ENSMUSG00000100350.1	Gm29091	ENSMUSG00000100350.1	ENSMUST00000187289.1	lincRNA	chrY:86727447-86730781
chrY	87677842	87678364	-	MURVY-LTR	LTR	ERV1	chrY	87678003	87678005	-	ENSMUST00000189979.1,ENSMUSG00000101866.1	Gm28109	ENSMUSG00000101866.1	ENSMUST00000189979.1	lincRNA	chrY:87674664-87678004
chrY	87958428	87958950	-	MURVY-LTR	LTR	ERV1	chrY	87958589	87958591	-	ENSMUST00000188331.1,ENSMUSG00000100352.1	Gm28104	ENSMUSG00000100352.1	ENSMUST00000188331.1	lincRNA	chrY:87955242-87958590
chrY	88182189	88182711	-	MURVY-LTR	LTR	ERV1	chrY	88182350	88182352	-	ENSMUST00000188417.1,ENSMUSG00000101770.1	Gm28718	ENSMUSG00000101770.1	ENSMUST00000188417.1	lincRNA	chrY:88179006-88182351
chrY	88270026	88270548	-	MURVY-LTR	LTR	ERV1	chrY	88270187	88270189	-	ENSMUST00000187298.1,ENSMUSG00000100930.1	Gm28866	ENSMUSG00000100930.1	ENSMUST00000187298.1	lincRNA	chrY:88266844-88270188
chrY	88664374	88664896	-	MURVY-LTR	LTR	ERV1	chrY	88664535	88664537	-	ENSMUST00000188678.1,ENSMUSG00000099436.1	Gm28977	ENSMUSG00000099436.1	ENSMUST00000188678.1	lincRNA	chrY:88661193-88664536
chrY	88962362	88962882	-	MURVY-LTR	LTR	ERV1	chrY	88962523	88962525	-	ENSMUST00000189429.1,ENSMUSG00000101694.1	Gm29392	ENSMUSG00000101694.1	ENSMUST00000189429.1	lincRNA	chrY:88959176-88962524
chrY	90275065	90275246	+	IAPLTR3	LTR	ERVK	chrY	90275223	90275225	+	ENSMUST00000186377.6,ENSMUSG00000100533.6	Gm29504	ENSMUSG00000100533.6	ENSMUST00000186377.6	lincRNA	chrY:90275224-90277501
chrY	90275065	90275246	+	IAPLTR3	LTR	ERVK	chrY	90275223	90275225	+	ENSMUST00000185605.1,ENSMUSG00000100533.6	Gm29504	ENSMUSG00000100533.6	ENSMUST00000185605.1	lincRNA	chrY:90275224-90277501
chrY	90667602	90667783	-	IAPLTR3	LTR	ERVK	chrY	90667624	90667626	-	ENSMUST00000187582.6,ENSMUSG00000099399.6	Gm28301	ENSMUSG00000099399.6	ENSMUST00000187582.6	lincRNA	chrY:90665346-90667625
chrY	90667602	90667783	-	IAPLTR3	LTR	ERVK	chrY	90667624	90667626	-	ENSMUST00000191048.1,ENSMUSG00000099399.6	Gm28301	ENSMUSG00000099399.6	ENSMUST00000191048.1	lincRNA	chrY:90665346-90667625
chrY	90785495	90785524	+	(TTTAA)n	Simple_repeat	Simple_repeat	chrY	90785500	90785502	+	ENSMUST00000177671.7,ENSMUSG00000096768.7	Gm47283	ENSMUSG00000096768.7	ENSMUST00000177671.7	protein_coding	chrY:90785501-90816464