Index of /Public_SPACE/eric/Public_html/Backup/Figure_4/summary_boxplots_analysis/
../
01_make_bed.sh 27-Jul-2026 04:33 1283
Naive_TE.bed 27-Jul-2026 04:33 7297
Naive_autosome_only.bed 27-Jul-2026 04:33 965
Naive_combined_chr1_22_chrX_input.bed 27-Jul-2026 04:33 7931
Naive_exon.bed 27-Jul-2026 04:33 1449
Naive_intergenic.bed 27-Jul-2026 04:33 2020
Naive_intron.bed 27-Jul-2026 04:33 5483
Naive_promoter.bed 27-Jul-2026 04:33 1215
Prime_TE.bed 27-Jul-2026 04:33 18857
Prime_autosome_only.bed 27-Jul-2026 04:33 4402
Prime_combined_chr1_22_chrX_input.bed 27-Jul-2026 04:33 26626
Prime_exon.bed 27-Jul-2026 04:33 18007
Prime_intergenic.bed 27-Jul-2026 04:33 3165
Prime_intron.bed 27-Jul-2026 04:33 21809
Prime_promoter.bed 27-Jul-2026 04:33 15444
TSC_TE.bed 27-Jul-2026 04:33 152216
TSC_all_clean.bed 27-Jul-2026 04:33 162987
TSC_autosome_input.bed 27-Jul-2026 04:33 19785
TSC_autosome_only.bed 27-Jul-2026 04:33 11385
TSC_chrX_input.bed 27-Jul-2026 04:33 143202
TSC_combined_chr1_22_chrX_input.bed 27-Jul-2026 04:33 162987
TSC_exon.bed 27-Jul-2026 04:33 43864
TSC_intergenic.bed 27-Jul-2026 04:33 37959
TSC_intron.bed 27-Jul-2026 04:33 118458
TSC_promoter.bed 27-Jul-2026 04:33 20803
annotation_analysis_autosome.sh 27-Jul-2026 04:33 5206
annotation_analysis_chrX.sh 27-Jul-2026 04:33 3993
annotation_bar_autosome.R 27-Jul-2026 04:16 2190
annotation_barplots.pdf 27-Jul-2026 04:16 5841
annotation_barplots_autosome_only.pdf 27-Jul-2026 04:16 5447
annotation_barplots_autosome_only.png 27-Jul-2026 04:16 88026
annotation_barplots_chrX_only.pdf 27-Jul-2026 04:16 5442
annotation_barplots_chrX_only.png 27-Jul-2026 04:16 87287
annotation_summary.tsv 27-Jul-2026 04:16 618
annotation_summary_autosome_clean.tsv 27-Jul-2026 04:16 445
annotation_summary_chrX_clean.tsv 27-Jul-2026 04:16 453
annotation_summary_clean.tsv 27-Jul-2026 04:16 618
chromosome_1pct_violin_abs_delta_by_state.pdf 27-Jul-2026 04:16 291490
chromosome_abs_delta_heatmap.pdf 27-Jul-2026 04:16 6641
chromosome_abs_delta_heatmap_2.pdf 27-Jul-2026 04:16 6717
chromosome_abs_delta_heatmap_lineplot.pdf 27-Jul-2026 04:16 12145
chromosome_abs_delta_heatmap_lineplot_2.pdf 27-Jul-2026 04:16 12163
chromosome_abs_delta_lineplot.pdf 27-Jul-2026 04:16 9670
chromosome_abs_delta_lineplot_2.pdf 27-Jul-2026 04:16 9677
chromosome_abs_delta_summary.tsv 27-Jul-2026 04:16 3667
exons.bed 27-Jul-2026 04:33 51152649
exons_chrX.bed 27-Jul-2026 04:33 1623414
genes.bed 27-Jul-2026 04:33 2018106
genes_3col.bed 27-Jul-2026 04:33 1862092
genes_3col_chrX.bed 27-Jul-2026 04:33 70144
genes_chrX.bed 27-Jul-2026 04:33 76056
global_1pct_chr_sample_violin_abs_delta.pdf 27-Jul-2026 04:16 18566
introns.bed 27-Jul-2026 04:33 11143664
introns_chrX.bed 27-Jul-2026 04:33 330147
make_GREAT_bed.sh 27-Jul-2026 04:33 2919
make_GREAT_bed_meancov5.sh 27-Jul-2026 04:49 2911
naive_all_clean.bed 27-Jul-2026 04:33 7931
naive_autosome_input.bed 27-Jul-2026 04:33 1986
naive_chrX_input.bed 27-Jul-2026 04:33 5945
plot_annotation_bars.R 27-Jul-2026 04:16 2364
plot_annotation_bars_chrX_only.R 27-Jul-2026 04:16 2166
plot_chr_abs_0.5.R 27-Jul-2026 04:16 4528
plot_chr_abs_delta.R 27-Jul-2026 04:16 4062
prime_all_clean.bed 27-Jul-2026 04:33 26626
prime_autosome_input.bed 27-Jul-2026 04:33 7193
prime_chrX_input.bed 27-Jul-2026 04:33 19433
promoters.bed 27-Jul-2026 04:33 1407276
promoters_chrX.bed 27-Jul-2026 04:33 55667
run_annotation_analysis.sh 27-Jul-2026 04:33 5840
sampled_1pct_each_chr_each_state.tsv 27-Jul-2026 04:16 11356380
summary_violin_supplementary_plot.R 27-Jul-2026 20:30 4966
supp_chr9_1pct_h1_vs_h2_scatter.pdf 27-Jul-2026 04:16 144174