Index of /Public_SPACE/eric/Public_html/Backup/RSEM/DET_test/old/
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Primed_vs_Naive/ 30-Apr-2026 19:29 -
TSC_vs_Naive/ 30-Apr-2026 19:29 -
TSC_vs_Primed/ 30-Apr-2026 19:29 -
A_intersection_all_DET_TE_TPM_ZSCORE_ORDERED.tsv 29-Apr-2026 21:29 1691
A_intersection_all_DET_TE_TPM_heatmap.pdf 29-Apr-2026 21:29 6654
A_intersection_all_DET_TE_missing_from_expressi..> 24-Apr-2026 19:58 0
CPM.csv 30-Apr-2026 17:06 5073555
C_Primed_vs_Naive_all_DET_TE_TPM_ZSCORE_ORDERED..> 24-Apr-2026 19:58 18069
C_Primed_vs_Naive_all_DET_TE_TPM_heatmap.pdf 24-Apr-2026 19:58 11141
C_Primed_vs_Naive_all_DET_TE_missing_from_expre..> 24-Apr-2026 19:58 0
C_TSC_vs_Naive_all_DET_TE_TPM_ZSCORE_ORDERED.tsv 24-Apr-2026 19:58 287272
C_TSC_vs_Naive_all_DET_TE_TPM_heatmap.pdf 24-Apr-2026 19:58 84893
C_TSC_vs_Naive_all_DET_TE_missing_from_expressi..> 24-Apr-2026 19:58 0
C_TSC_vs_Primed_all_DET_TE_TPM_ZSCORE_ORDERED.tsv 24-Apr-2026 19:58 429593
C_TSC_vs_Primed_all_DET_TE_TPM_heatmap.pdf 24-Apr-2026 19:58 123323
C_TSC_vs_Primed_all_DET_TE_missing_from_express..> 24-Apr-2026 19:58 0
Heatmap of TEs across cell states in DET of Pri..> 29-Apr-2026 21:33 11083
Heatmap of TEs across cell states in DET of Pri..> 29-Apr-2026 21:29 18069
Heatmap of TEs across cell states in DET of Pri..> 29-Apr-2026 21:29 11201
Heatmap of TEs across cell states in DET of Pri..> 29-Apr-2026 21:20 0
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:33 83850
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:33 120447
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:29 287272
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:29 77056
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:20 0
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:29 429593
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:29 111007
Heatmap of TEs across cell states in DET of TSC..> 29-Apr-2026 21:20 0
Heatmap_A.pdf 24-Apr-2026 19:07 6092
Heatmap_A_intersection_log2FC_all3comparisons.pdf 24-Apr-2026 19:06 3611
Heatmap_Primed_vs_Naive.pdf 24-Apr-2026 19:07 8913
Heatmap_TSC_vs_Naive.pdf 24-Apr-2026 19:07 53223
Heatmap_TSC_vs_Primed.pdf 24-Apr-2026 19:07 78537
Heatmap_intersection_log2FC.pdf 24-Apr-2026 18:46 5950
Primed_vs_Naive_DEG_TSS_TE.tsv 24-Apr-2026 17:59 29437
Primed_vs_Naive_DEG_full_list.csv 23-Apr-2026 21:28 9539695
Primed_vs_Naive_DEG_significant_only.csv 23-Apr-2026 21:28 125345
Primed_vs_Naive_MA_plot.pdf 23-Apr-2026 21:29 2233789
Primed_vs_Naive_PCA.pdf 23-Apr-2026 21:28 5019
Primed_vs_Naive_PCA_with_annotation.pdf 23-Apr-2026 21:28 5099
Primed_vs_Naive_filtered_CPM.csv 23-Apr-2026 20:42 3444307
Primed_vs_Naive_heatmap.pdf 23-Apr-2026 21:28 5760
Primed_vs_Naive_ids.txt 24-Apr-2026 17:59 13836
Primed_vs_Naive_volcano.pdf 23-Apr-2026 21:28 3264110
Primed_vs_Naive_volcano_plot.pdf 23-Apr-2026 20:42 3219681
RNA-seq_DEG_with_DE_in_GO.R 30-Apr-2026 17:12 23401
RPKM.csv 30-Apr-2026 17:06 5092413
TPM_Intersection.pdf 24-Apr-2026 19:34 3611
TSC_vs_Naive_DEG_TSS_TE.tsv 24-Apr-2026 17:59 510603
TSC_vs_Naive_DEG_full_list.csv 23-Apr-2026 21:29 7289409
TSC_vs_Naive_DEG_significant_only.csv 23-Apr-2026 21:29 2103394
TSC_vs_Naive_MA_plot.pdf 23-Apr-2026 21:29 1715537
TSC_vs_Naive_PCA.pdf 23-Apr-2026 21:29 5148
TSC_vs_Naive_PCA_with_annotation.pdf 23-Apr-2026 21:29 5232
TSC_vs_Naive_filtered_CPM.csv 23-Apr-2026 20:42 3085342
TSC_vs_Naive_heatmap.pdf 23-Apr-2026 21:29 5851
TSC_vs_Naive_ids.txt 24-Apr-2026 17:59 199122
TSC_vs_Naive_volcano.pdf 23-Apr-2026 21:29 2268903
TSC_vs_Naive_volcano_plot.pdf 23-Apr-2026 20:43 2233184
TSC_vs_Primed_DEG_TSS_TE.tsv 24-Apr-2026 17:59 792052
TSC_vs_Primed_DEG_full_list.csv 23-Apr-2026 21:29 8646268
TSC_vs_Primed_DEG_significant_only.csv 23-Apr-2026 21:29 3309441
TSC_vs_Primed_MA_plot.pdf 23-Apr-2026 21:30 2349533
TSC_vs_Primed_PCA.pdf 23-Apr-2026 21:30 5014
TSC_vs_Primed_PCA_with_annotation.pdf 23-Apr-2026 21:30 5091
TSC_vs_Primed_heatmap.pdf 23-Apr-2026 21:30 5735
TSC_vs_Primed_ids.txt 24-Apr-2026 17:59 328234
TSC_vs_Primed_volcano.pdf 23-Apr-2026 21:30 2817834
assembled_TSS_TE 24-Apr-2026 17:57 3310733
assembled_TSS_TE_withID.tsv 24-Apr-2026 17:59 3533963
deg_ids.txt 24-Apr-2026 18:22 686778
design_Primed_vs_Naive.tsv 30-Apr-2026 17:08 142
design_TSC_vs_Naive.tsv 30-Apr-2026 17:08 142
design_TSC_vs_Primed.tsv 30-Apr-2026 17:08 142
fc.tsv 24-Apr-2026 18:25 1378180
filtered_CPM.csv 30-Apr-2026 17:06 117
fixed_TPM_isoform.tsv 24-Apr-2026 19:57 11562034
fixed_counts.tsv 30-Apr-2026 16:50 0
fixed_counts_clean.tsv 30-Apr-2026 17:15 2946981
fixed_counts_int.tsv 30-Apr-2026 16:41 2946877
fixed_counts_isoform.tsv 24-Apr-2026 19:28 11073866
heatmap.R 29-Apr-2026 21:25 3624
te_ids.txt 24-Apr-2026 19:30 32224
te_ids_uniq.txt 30-Apr-2026 19:29 165448
tpm_heatmap.R 29-Apr-2026 21:33 3971
tpm_ids.txt 24-Apr-2026 19:30 3891817