---
  # Not actually RRBS data, just run WGBS as RRBS
  - name: test_rrbs
    tags:
      - functional
    command: >-
      tests/caper_run.sh
      wgbs-pipeline.wdl
      tests/functional/json/test_rrbs.json
    files:
      - path: test-output/gembs.conf
        md5sum: 656a4e72a320f47adf9bddc7a864ac3f
      - path: test-output/gembs_metadata.csv
        md5sum: 40419347ed006135fbf6e909693f0e9c
      - path: test-output/indexes.tar.gz
        md5sum: 85754d48cc1ca9238ef115ca64a61445
      - path: test-output/gemBS.json
        md5sum: 38cc35382f907a63fc58baebe5e5de5f
      - path: test-output/glob-e97d885c83d966247d485dc62b6ae799/sacCer3.contig.sizes
        md5sum: 0497066e3880c6932cf6bde815c42c40
      - path: test-output/glob-c8599c0b9048b55a8d5cfaad52995a94/sample_sample5.bam
        md5sum: 8976efc0e5d3f51bf65e6e0493afeeb6
      - path: test-output/glob-c0e92e4e9fb050e7e70bb645748b45dd/sample5.json
        md5sum: 043a3f07cc800fcbfb2186e449fcb413
      - path: test-output/glob-0b0236659b9524643e6454061959b28c/sample_sample5_pos.bw
        md5sum: bd67706599694f3c8984c38ff7589eb3
      - path: test-output/glob-041e1709c7dd1f320426281eb4649f9b/sample_sample5_neg.bw
        md5sum: a3055e0651234c1f7dc1fa6be7012c73
      - path: test-output/glob-708835e6a0042d33b00b6937266734f5/sample_sample5_chg.bb
        md5sum: 5ca9c51b683180d4286e83f89b4b90f3
      - path: test-output/glob-f70a6609728d4fb1448dba1f41361a30/sample_sample5_cpg.bb
        md5sum: 295bd3b29aac0722565ac9c9bb124cfd
      - path: test-output/glob-52f916d7cc14a5bcfb168d6910e04b56/sample_sample5_chg.bed.gz
        md5sum: 1164171e1c7c2a62989590709bf379eb
      - path: test-output/glob-2b5148d6967b43eee33eb370fd36b70e/sample_sample5_chh.bed.gz
        md5sum: 2d8f5cd52cf74b0757e2599f06266d3c
      - path: test-output/glob-f31cca1fcab505e10c2fe5ff003b211a/sample_sample5_cpg.bed.gz
        md5sum: dc0a7f1831e9c0475bee112bc21f683a
      - path: test-output/glob-b76cddd256e1197e0b726acc7184afc4/sample_sample5_cpg.txt.gz
        md5sum: dbdff797c9dd1a855b8d4ca7b5498f7c
      - path: test-output/glob-40c90aa4516b00209d682b819b1d021f/sample_sample5_non_cpg.txt.gz
        md5sum: 97ed1234fbdd00e428e4c722f067134e
      - path: test-output/gembs_map_qc.json
        md5sum: d85e3700e41607e991bf7a7bfd6c799f
      - path: test-output/glob-65c481a690a62b639d918bb70927f25e/sample_sample5.isize.png
        md5sum: a4596aa822ed081788ed2c72ec555a9a
      - path: test-output/mapping_reports/mapping/sample_sample5.mapq.png
        md5sum: 3ed99b9be0131e9f7cc7d70f74194669
      - path: test-output/glob-1aeed469ae5d1e8d7cbca51e8758b781/ENCODE.html
        md5sum: b2ad3be0fa1ab6dd1252172a79b33b9c
      - path: test-output/glob-1aeed469ae5d1e8d7cbca51e8758b781/sample5.html
        md5sum: 54032ceac4315e9a74ef605831d37e47
      - path: test-output/glob-1aeed469ae5d1e8d7cbca51e8758b781/sample_sample5.html
        md5sum: ff5c58abb18ba97df3788ea5acb710ca
      - path: test-output/glob-1aeed469ae5d1e8d7cbca51e8758b781/sample5.isize.png
        md5sum: 329d748b732e27a0996956b288ad1071
      - path: test-output/glob-1aeed469ae5d1e8d7cbca51e8758b781/sample5.mapq.png
        md5sum: ec55f587784b6475607874f9837911ee
      - path: test-output/coverage.bw
        md5sum: 6b1da64b55ae1102b364903b3fea5289
      - path: test-output/average_coverage_qc.json
        md5sum: e98ea1f0eb34fedb394c4dd38fb52cdc
      - path: test-output/bed_pearson_correlation_qc.json
        should_exist: false
