---
  - name: test_extract
    tags:
      - integration
    command: >-
      tests/caper_run.sh
      tests/integration/wdl/test_extract.wdl
      tests/integration/json/test_extract.json
    files:
      - path: test-output/glob-0b0236659b9524643e6454061959b28c/sample_sample5_pos.bw
        md5sum: c30bc10a258ca4f1fe67f115c4c2db10
      - path: test-output/glob-041e1709c7dd1f320426281eb4649f9b/sample_sample5_neg.bw
        md5sum: f49ab06a51d9c4a8e663f0472e70eb06
      - path: test-output/glob-708835e6a0042d33b00b6937266734f5/sample_sample5_chg.bb
        md5sum: cc123bff807e0637864d387628d410fa
      - path: test-output/glob-f70a6609728d4fb1448dba1f41361a30/sample_sample5_cpg.bb
        md5sum: f67f273c68577197ecf19a8bb92c925c
      - path: test-output/glob-52f916d7cc14a5bcfb168d6910e04b56/sample_sample5_chg.bed.gz
        md5sum: 6994fafbf9eab44ff6e7fafa421fffbc
      - path: test-output/glob-2b5148d6967b43eee33eb370fd36b70e/sample_sample5_chh.bed.gz
        md5sum: 31a69396b7084520c04bd80f2cabfd59
      - path: test-output/glob-f31cca1fcab505e10c2fe5ff003b211a/sample_sample5_cpg.bed.gz
        md5sum: 67193e21cc34b76d12efba1a19df6644
      - path: test-output/glob-628ba0e53e46e56a922182fdf74ce1bf/sample_sample5_cpg_no_header.bed.gz
        md5sum: 0d0a985906aedd14ccf28902296973f7
      - path: test-output/glob-c21212b9b574c316b4e3d490c453bd11/sample_sample5_chg_no_header.bed.gz
        md5sum: f4b4e36743ac0cc97b74ff5ae314e1f1
      - path: test-output/glob-dbc0dd928cb6f1c5110fcb3356cc659b/sample_sample5_chh_no_header.bed.gz
        md5sum: cfcdba96e174270df46fd81d355de2b7
      - path: test-output/glob-b76cddd256e1197e0b726acc7184afc4/sample_sample5_cpg.txt.gz
        md5sum: fccd9c9c5b4fea80890abd536fd76a35
      - path: test-output/glob-24ceb385eea2ca53f1e6c4a1438ccd21/sample_sample5_cpg.txt.gz.tbi
        md5sum: a1e08686f568af353e9026c1de00c25d
      - path: test-output/glob-40c90aa4516b00209d682b819b1d021f/sample_sample5_non_cpg.txt.gz
        md5sum: 6809ee8479439454aa502ae11f48d91c
      - path: test-output/glob-664ff83c3881df2363da923f006b098b/sample_sample5_non_cpg.txt.gz.tbi
        md5sum: 6cdebb4ad2ea184ca4783acb350ae038
  - name: test_extract_different_chrom_sizes_name
    tags:
      - integration
    command: >-
      tests/caper_run.sh
      tests/integration/wdl/test_extract.wdl
      tests/integration/json/test_extract_different_chrom_sizes_name.json
    files:
      - path: test-output/glob-0b0236659b9524643e6454061959b28c/sample_sample5_pos.bw
        md5sum: c30bc10a258ca4f1fe67f115c4c2db10
