state (Emission order) Genome % CpGIsland.mm10.bed.gz RefSeqExon.mm10.bed.gz RefSeqGene.mm10.bed.gz RefSeqTES.mm10.bed.gz RefSeqTSS.mm10.bed.gz RefSeqTSS2kb.mm10.bed.gz 1 0.36939 40.13216 5.60223 1.86977 2.81071 24.01431 17.75551 2 2.34002 0.07312 0.79701 1.42863 1.15789 0.50001 1.88119 3 1.21895 55.28388 6.05586 1.82584 2.28297 38.57507 18.72718 4 2.21454 0.20514 1.51583 1.65269 1.88927 1.23388 2.21975 5 90.64451 0.15483 0.82018 0.92915 0.84811 0.38863 0.60348 6 3.21259 0.97344 3.41841 1.82369 3.86256 1.54982 2.05264 Base 100 0.38473 2.41702 36.75401 0.00095 0.00102 3.52912