ChromHMM Report

Input Directory: BPA10mg_binarizedData
Output Directory: BPA10mg_LearnModel_z8
Number of States: 6
Assembly: mm10
Full ChromHMM command: LearnModel -z 8 BPA10mg_binarizedData BPA10mg_LearnModel_z8 6 mm10

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • mm10_6 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • mm10_6 Browser Custom Track Dense File
  • mm10_6 Browser Custom Track Expanded File

    State Enrichments

    mm10_6 Enrichments


  • mm10_6 Overlap Enrichment SVG File
  • mm10_6 Overlap Enrichment Tab-Delimited Text File

  • mm10_6_RefSeqTES_neighborhood Enrichment SVG File
  • mm10_6_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • mm10_6_RefSeqTSS_neighborhood Enrichment SVG File
  • mm10_6_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File