state (Emission order) Genome % CpGIsland.mm10.bed.gz RefSeqExon.mm10.bed.gz RefSeqGene.mm10.bed.gz RefSeqTES.mm10.bed.gz RefSeqTSS.mm10.bed.gz RefSeqTSS2kb.mm10.bed.gz 1 0.31125 48.54845 6.10357 1.82689 2.64130 30.11932 18.67049 2 1.75512 0.06403 0.77434 1.40491 1.15233 0.45947 1.95123 3 1.21283 53.45758 5.93924 1.83208 2.30722 37.10744 18.37475 4 2.37521 0.22990 1.60141 1.67190 1.99547 1.33381 2.26295 5 4.10212 1.21458 3.73044 1.92531 4.17474 1.49458 2.21952 6 90.24347 0.15972 0.78046 0.91834 0.80330 0.39355 0.59837 Base 100 0.38473 2.41702 36.75401 0.00095 0.00102 3.52912