Information for 20-CTAWGAGS (Motif 17)

A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C A C G T G T A C C G T A A C G T C G T A C T A G
p-value:1e-138
log p-value:-3.179e+02
Information Content per bp:1.780
Number of Target Sequences with motif11523.0
Percentage of Target Sequences with motif15.98%
Number of Background Sequences with motif9143.1
Percentage of Background Sequences with motif12.76%
Average Position of motif in Targets100.1 +/- 56.9bp
Average Position of motif in Background100.2 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CTAWGAGS---
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTAWGAGS---
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTAWGAGS
CTAATKGV
 A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTAWGAGS
NTTTTACGAGN
 A C G T A C G T A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTAWGAGS
TTTTATKRGG
 A C G T A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTAWGAGS-
----CAGCC
 A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G A C G T
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTAWGAGS
GNCTATAAAAGG
 A C G T A C G T A C G T A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTAWGAGS-
TTCAAAWTAAAAGTC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G A C G T
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTAWGAGS-
TTAAGTGGN
 A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTAWGAGS-
GCTAATTGCT
 A C G T A G T C A C G T G T C A C G A T A C T G C G T A A C T G A T C G A C G T
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T