Information for 23-GATTTATG (Motif 23)

A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G
Reverse Opposite:
G T A C C T G A A C G T C G T A C G T A C G T A A C G T A G T C
p-value:1e-52
log p-value:-1.216e+02
Information Content per bp:1.939
Number of Target Sequences with motif1277.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif801.8
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets98.9 +/- 55.7bp
Average Position of motif in Background101.7 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--GATTTATG---
NTGATTTATGGCC
 A C G T A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATG--
TGATTTATGGC
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATG---
TGATTTATGGCC
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GATTTATG--
RTGATTKATRGN
 A C G T A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATG---
DGWTTTATGRCN
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATG-
TGATTGATGA
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GATTTATG--
-TTTTATTGC
 A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GATTTATG-
TGATKGATGR
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GATTTATG--
ATGATKGATGRC
 A C G T A C G T A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GATTTATG--
NTTTTATGAC
 A C T G C G T A A C G T A C G T A C G T C G T A A G C T A C T G A C G T A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C