Information for 9-CTGGCAGCCACA (Motif 10)

G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
Reverse Opposite:
C G A T A T C G C A G T C A T G C A T G G A T C A C G T A T C G A T G C T G A C C G T A C T A G
p-value:1e-12
log p-value:-2.787e+01
Information Content per bp:1.710
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.70%
Number of Background Sequences with motif671.4
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets102.5 +/- 47.7bp
Average Position of motif in Background97.7 +/- 65.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGCCACA
VGCTGGCA------
 A C G T A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCCACA
CTTGGCAA-----
 A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCCACA
VBTGWCAGCB---
 A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTGGCAGCCACA---
----AAACCACAGAN
 G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAGCCACA
AGGTGHCAGACA--
 A C G T A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCCACA
NTTGGCANN----
 A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGGCAGCCACA--
----AAACCACANN
 G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAGCCACA
SCTGTCAVTCAV-
 A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGGCAGCCACA
---BCAGACWA-
 G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGCCACA
AGGTGNCAGACAG-
 A C G T A C G T G A T C G C A T A C T G T A C G T A G C T G C A C T A G G T A C G A T C G T C A T A G C G C T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T