Information for 10-TGGCATGGCCAA (Motif 12)

A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
Reverse Opposite:
G C A T A C G T C A T G C T A G G A T C A T G C G T C A A C G T A T C G T A G C G A T C G T C A
p-value:1e-10
log p-value:-2.518e+01
Information Content per bp:1.704
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.20%
Number of Background Sequences with motif408.9
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets82.0 +/- 53.7bp
Average Position of motif in Background95.2 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCATGGCCAA
NTTGGCANN-----
 A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCATGGCCAA
GGTTGGCAT------
 A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGCATGGCCAA
VGCTGGCA-------
 A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGCATGGCCAA
NGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGCATGGCCAA
GGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TGGCATGGCCAA
NGTAGGTTGGCATNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGCATGGCCAA
NNTTGGCANN-----
 A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGGCATGGCCAA-
---CAAGGHCANV
 A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGGCATGGCCAA
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGCATGGCCAA
TTGCCAAG-----
 A C G T A C G T C T A G A T C G A T G C G T C A C A G T T A C G C T A G A G T C G T A C T G C A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T