Information for 18-CAGCGTGTCA (Motif 20)

A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G C G T A G T A C C G T A A G T C A C T G A G T C C G A T A C T G
p-value:1e-8
log p-value:-2.019e+01
Information Content per bp:1.883
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif61.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets99.8 +/- 44.4bp
Average Position of motif in Background103.8 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGCGTGTCA
-TGCGTG---
 A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGCGTGTCA-
---CCTGTCAA
 A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGCGTGTCA-
----NTGTCAN
 A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGCGTGTCA
TTGCGTGCVA
 A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCGTGTCA----
CGCGCCGGGTCACGTA
 A C G T A C G T A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGTGTCA
DCTCAGCAGG---
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGTGTCA-----
TNNNNGGTGTCATNTNT
 A C G T A C G T A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CAGCGTGTCA---
-----TGTCANYT
 A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGTGTCA-
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAGCGTGTCA-
---GCTGTCAA
 A G T C C G T A A C T G A G T C A C T G C G A T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A