Information for 19-CCGGCCTGCT (Motif 23)

A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T
Reverse Opposite:
C T G A C T A G A T G C C G T A C T A G T A C G A T G C A T G C A C T G A C T G
p-value:1e-8
log p-value:-1.849e+01
Information Content per bp:1.728
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.85%
Number of Background Sequences with motif982.2
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets87.1 +/- 57.3bp
Average Position of motif in Background98.5 +/- 61.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCGGCCTGCT---
-CCCCCTGCTGTG
 A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

SP2/MA0516.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGGCCTGCT---
GCCCCGCCCCCTCCC
 A C G T A C G T A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T A C G T
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCGGCCTGCT----
GGCCYCCTGCTGDGH
 A C G T A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CCGGCCTGCT
GGGGCCGAGGCCTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGGCCTGCT------
-TNTCCTGCTGTGNNG
 A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCCTGCT
TTCCCGCCWG--
 A C G T A C G T A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T
A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCGGCCTGCT----
----CCTGCTGAGH
 A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGGCCTGCT------
-TCNCCTGCTGNGNNN
 A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGGCCTGCT
CNAGGCCT---
 A C G T A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCGGCCTGCT--
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C T A C G A T C G A T G C G A T C C G A T A T C G A G T C A G C T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G