Information for 8-AGGGCAST (Motif 25)

G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
Reverse Opposite:
C G T A A T G C A G C T A C T G G T A C A T G C A G T C C G A T
p-value:1e-7
log p-value:-1.782e+01
Information Content per bp:1.768
Number of Target Sequences with motif118.0
Percentage of Target Sequences with motif17.69%
Number of Background Sequences with motif5070.0
Percentage of Background Sequences with motif10.54%
Average Position of motif in Targets103.1 +/- 55.1bp
Average Position of motif in Background101.3 +/- 64.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAST
TNNGGGCAG-
 A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCAST
NBYCAAGGTCAC-
 A C G T A C G T A C G T A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCAST---
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAST
TRAGGTCA--
 A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAST
AAGGTCAC-
 A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGGGCAST
CAAAGGTCAG-
 A C G T A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAST
NGTGGGCAT-
 A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCAST--
NAGGTCATTGA
 A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T A C G T A C G T
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGGGCAST
TCAAGGTCAN-
 A C G T A C G T A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCAST-----
NAGGTCANTGACCT
 A C G T G C T A C T A G A T C G A C T G G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T