Information for 11-CTGTCTGG (Motif 27)

A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G
Reverse Opposite:
A G T C A G T C C T G A A C T G G T C A A G T C C T G A A C T G
p-value:1e-6
log p-value:-1.606e+01
Information Content per bp:1.856
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif17.39%
Number of Background Sequences with motif5124.2
Percentage of Background Sequences with motif10.65%
Average Position of motif in Targets95.6 +/- 53.7bp
Average Position of motif in Background99.3 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CTGTCTGG
CTGTCTGG
 A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTGG
VBSYGTCTGG
 A C G T A C G T A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad4/MA1153.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CTGTCTGG-
-TGTCTAGA
 A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G A C G T
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTGTCTGG
TWGTCTGV
 A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTGG
GCTGTG---
 A C G T A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGTCTGG---
-GGTCTGGCAT
 A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G A C G T A C G T A C G T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTGG---
YSTGGGTGGTCT
 A C G T A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G A C G T A C G T A C G T
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTGTCTGG--
VCCTCTCTGDDY
 A C G T A C G T A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G A C G T A C G T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C

NFYA/MA0060.3/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTGG--
NCTGATTGGNN
 A C G T A G T C A G C T A C T G A C G T T G A C A G C T A C T G A C T G A C G T A C G T
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C T A G T C A G G A C T A G C T