Information for 12-GGAGCCAA (Motif 28)

C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G A C T G A G T C G A C T A G T C A G T C
p-value:1e-6
log p-value:-1.603e+01
Information Content per bp:1.893
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif9.60%
Number of Background Sequences with motif2274.6
Percentage of Background Sequences with motif4.73%
Average Position of motif in Targets103.7 +/- 54.5bp
Average Position of motif in Background100.3 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GGAGCCAA-
CGTGCCAAG
 C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCAA
CGGAGC---
 A C G T C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAA----
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAA----
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

E2F1/MA0024.3/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GGAGCCAA-
TTTGGCGCCAAA
 A C G T A C G T A C G T C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGAGCCAA--
GGTGCCAAGT
 C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGAGCCAA----
--AGCCAATCGG
 C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAA---
ACTAGCCAATCA
 A C G T C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGAGCCAA
-CAGCC--
 C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGAGCCAA---
NNTGCCAAGNN
 C T A G A C T G C T G A A C T G A G T C G T A C C G T A C G T A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A