Motif 30

Information for 19-GCCCCGGGCCGC (Motif 30)

Reverse Opposite:

p-value:	1e-6
log p-value:	-1.548e+01
Information Content per bp:	1.875
Number of Target Sequences with motif	8.0
Percentage of Target Sequences with motif	1.20%
Number of Background Sequences with motif	42.6
Percentage of Background Sequences with motif	0.09%
Average Position of motif in Targets	58.9 +/- 53.1bp
Average Position of motif in Background	95.8 +/- 53.2bp
Strand Bias (log2 ratio + to - strand density)	0.3
Multiplicity (# of sites on avg that occur together)	1.25
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.3/Jaspar

Match Rank:	1
Score:	0.66
Offset:	-1
Orientation:	forward strand
Alignment:	-GCCCCGGGCCGC CGCCTCAGGCA--

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:	2
Score:	0.65
Offset:	-1
Orientation:	forward strand
Alignment:	-GCCCCGGGCCGC TGCCCCCGGGCA-

TFAP2C/MA0524.2/Jaspar

Match Rank:	3
Score:	0.63
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCCCGGGCCGC TGCCCTNGGGCA-

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:	4
Score:	0.63
Offset:	-1
Orientation:	forward strand
Alignment:	-GCCCCGGGCCGC AGCCTCAGGCA--

TFAP2B/MA0811.1/Jaspar

Match Rank:	5
Score:	0.63
Offset:	-1
Orientation:	forward strand
Alignment:	-GCCCCGGGCCGC TGCCCCAGGGCA-

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:	6
Score:	0.63
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCCCGGGCCGC NGCCTNAGGCN--

Sp1(Zf)/Promoter/Homer

Match Rank:	7
Score:	0.62
Offset:	-1
Orientation:	forward strand
Alignment:	-GCCCCGGGCCGC GGCCCCGCCCCC-

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:	8
Score:	0.61
Offset:	-3
Orientation:	reverse strand
Alignment:	---GCCCCGGGCCGC NTNGCCTCAGGCNNN

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:	9
Score:	0.61
Offset:	0
Orientation:	forward strand
Alignment:	GCCCCGGGCCGC SCCTSAGGSCAW

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:	10
Score:	0.60
Offset:	-2
Orientation:	reverse strand
Alignment:	--GCCCCGGGCCGC NTGCCCTAGGGCAA