Information for 2-GCCMYCTRGTGG (Motif 2)

C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G
Reverse Opposite:
G T A C A G T C C G T A T A G C G A C T C T G A A C T G C T A G C A T G A C T G A C T G G A T C
p-value:1e-1674
log p-value:-3.855e+03
Information Content per bp:1.766
Number of Target Sequences with motif3062.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif365.5
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets101.0 +/- 49.5bp
Average Position of motif in Background96.7 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.92
Offset:-5
Orientation:forward strand
Alignment:-----GCCMYCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----GCCMYCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.92
Offset:-7
Orientation:forward strand
Alignment:-------GCCMYCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCFL/MA1102.1/Jaspar

Match Rank:4
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---GCCMYCTRGTGG
NGTGCCCCCTGGNG-
 A C G T A C G T A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCMYCTRGTGG
GCCATCTGTT--
 C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCMYCTRGTGG--
GGCCYCCTGCTGDGH
 A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCMYCTRGTGG-
-CCCCCTGCTGTG
 C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

NEUROD1/MA1109.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCMYCTRGTGG
NNNCCATCTGTNN-
 A C G T A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G
A T G C A G C T T C A G T G A C G T A C C G T A A C G T T G A C G C A T A C T G A G C T A G T C G T A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCMYCTRGTGG--
GACCCCCCGCTGTGC
 A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCMYCTRGTGG-
NGGCCTCCCAGGGAG
 A C G T A C G T C T A G G T A C A G T C G T A C A G T C A G T C G A C T C T G A A T C G G C A T A C T G C A T G A C G T
G C T A A C T G T C A G G A T C A G T C G A C T A G T C G T A C G A T C C T G A T A C G C T A G T C A G C G T A A T C G