Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 70308)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 69766)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3833	-8.827e+03	0.0000	11411.0	16.23%	2539.5	3.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3761	-8.661e+03	0.0000	12574.0	17.88%	3135.6	4.49%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3682	-8.479e+03	0.0000	12305.0	17.50%	3062.1	4.38%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-3667	-8.445e+03	0.0000	11263.0	16.02%	2579.7	3.69%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3552	-8.180e+03	0.0000	10355.0	14.72%	2243.1	3.21%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3515	-8.094e+03	0.0000	13119.0	18.65%	3601.6	5.16%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3095	-7.128e+03	0.0000	8009.0	11.39%	1513.4	2.17%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2582	-5.947e+03	0.0000	6298.0	8.96%	1103.5	1.58%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2140	-4.929e+03	0.0000	4819.0	6.85%	762.3	1.09%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1313	-3.025e+03	0.0000	4209.0	5.98%	962.1	1.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1244	-2.866e+03	0.0000	5803.0	8.25%	1809.7	2.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-768	-1.769e+03	0.0000	18748.0	26.66%	12315.4	17.63%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-696	-1.603e+03	0.0000	9210.0	13.10%	4919.9	7.04%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-539	-1.242e+03	0.0000	2665.0	3.79%	852.3	1.22%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-453	-1.045e+03	0.0000	15948.0	22.68%	11212.2	16.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-434	-1.000e+03	0.0000	1279.0	1.82%	266.4	0.38%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-413	-9.519e+02	0.0000	1148.0	1.63%	225.8	0.32%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-400	-9.230e+02	0.0000	1009.0	1.43%	178.9	0.26%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-393	-9.059e+02	0.0000	12271.0	17.45%	8347.6	11.95%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-381	-8.774e+02	0.0000	9701.0	13.79%	6267.8	8.97%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-364	-8.388e+02	0.0000	10853.0	15.43%	7285.2	10.43%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-359	-8.268e+02	0.0000	1053.0	1.50%	218.7	0.31%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-327	-7.536e+02	0.0000	6825.0	9.70%	4160.4	5.96%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-325	-7.489e+02	0.0000	2958.0	4.21%	1330.7	1.91%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-308	-7.098e+02	0.0000	13792.0	19.61%	10067.4	14.41%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-293	-6.769e+02	0.0000	7193.0	10.23%	4572.2	6.55%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-287	-6.610e+02	0.0000	933.0	1.33%	213.7	0.31%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-265	-6.102e+02	0.0000	9355.0	13.30%	6477.8	9.27%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-256	-5.899e+02	0.0000	12141.0	17.26%	8914.3	12.76%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-255	-5.873e+02	0.0000	8442.0	12.00%	5759.0	8.24%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-253	-5.831e+02	0.0000	4979.0	7.08%	2971.6	4.25%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-246	-5.669e+02	0.0000	6162.0	8.76%	3928.7	5.62%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-240	-5.535e+02	0.0000	5968.0	8.49%	3795.4	5.43%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-220	-5.085e+02	0.0000	11461.0	16.30%	8525.0	12.20%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-213	-4.917e+02	0.0000	4676.0	6.65%	2871.9	4.11%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-211	-4.872e+02	0.0000	6412.0	9.12%	4273.3	6.12%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-208	-4.792e+02	0.0000	7737.0	11.00%	5391.4	7.72%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-204	-4.714e+02	0.0000	4689.0	6.67%	2914.0	4.17%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-203	-4.694e+02	0.0000	6666.0	9.48%	4517.8	6.47%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-203	-4.679e+02	0.0000	6567.0	9.34%	4438.8	6.35%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-199	-4.590e+02	0.0000	4985.0	7.09%	3168.5	4.54%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-197	-4.544e+02	0.0000	6655.0	9.46%	4538.1	6.50%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-193	-4.466e+02	0.0000	36275.0	51.58%	32117.8	45.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-185	-4.273e+02	0.0000	5979.0	8.50%	4034.0	5.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-178	-4.112e+02	0.0000	3260.0	4.64%	1896.4	2.71%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-177	-4.081e+02	0.0000	8839.0	12.57%	6500.6	9.31%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-171	-3.958e+02	0.0000	3410.0	4.85%	2032.3	2.91%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-167	-3.860e+02	0.0000	9465.0	13.46%	7104.1	10.17%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-165	-3.810e+02	0.0000	3009.0	4.28%	1747.7	2.50%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-164	-3.797e+02	0.0000	6581.0	9.36%	4636.2	6.64%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-158	-3.645e+02	0.0000	1057.0	1.50%	405.1	0.58%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-152	-3.508e+02	0.0000	10509.0	14.94%	8129.8	11.64%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-152	-3.502e+02	0.0000	6319.0	8.99%	4482.3	6.42%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-142	-3.282e+02	0.0000	5365.0	7.63%	3729.3	5.34%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-142	-3.273e+02	0.0000	23166.0	32.94%	19941.2	28.55%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-139	-3.217e+02	0.0000	4444.0	6.32%	2980.5	4.27%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-130	-2.994e+02	0.0000	3554.0	5.05%	2300.9	3.29%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-128	-2.964e+02	0.0000	5987.0	8.51%	4329.3	6.20%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-122	-2.823e+02	0.0000	2250.0	3.20%	1308.3	1.87%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-121	-2.808e+02	0.0000	6254.0	8.89%	4598.6	6.58%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-119	-2.744e+02	0.0000	20480.0	29.12%	17638.8	25.25%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-116	-2.693e+02	0.0000	11297.0	16.06%	9114.5	13.05%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-115	-2.660e+02	0.0000	7459.0	10.61%	5689.3	8.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-115	-2.660e+02	0.0000	13395.0	19.05%	11047.4	15.82%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-111	-2.573e+02	0.0000	13626.0	19.38%	11296.0	16.17%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-110	-2.535e+02	0.0000	18730.0	26.63%	16083.2	23.02%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-107	-2.466e+02	0.0000	22141.0	31.48%	19360.4	27.72%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-106	-2.457e+02	0.0000	15200.0	21.61%	12807.7	18.34%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-106	-2.446e+02	0.0000	5204.0	7.40%	3791.5	5.43%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-105	-2.435e+02	0.0000	6197.0	8.81%	4651.3	6.66%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-105	-2.429e+02	0.0000	6508.0	9.25%	4924.2	7.05%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-103	-2.386e+02	0.0000	7567.0	10.76%	5870.5	8.40%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-102	-2.365e+02	0.0000	8484.0	12.06%	6694.1	9.58%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-100	-2.311e+02	0.0000	4899.0	6.97%	3565.6	5.10%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-100	-2.310e+02	0.0000	15017.0	21.35%	12704.6	18.19%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-99	-2.301e+02	0.0000	15459.0	21.98%	13121.0	18.78%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-99	-2.297e+02	0.0000	5819.0	8.27%	4362.5	6.25%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-99	-2.284e+02	0.0000	14363.0	20.42%	12106.3	17.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-98	-2.274e+02	0.0000	5724.0	8.14%	4286.8	6.14%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-98	-2.269e+02	0.0000	9811.0	13.95%	7925.5	11.35%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-98	-2.265e+02	0.0000	2244.0	3.19%	1386.6	1.99%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-98	-2.265e+02	0.0000	9034.0	12.85%	7224.3	10.34%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-98	-2.260e+02	0.0000	9959.0	14.16%	8063.4	11.54%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-96	-2.223e+02	0.0000	10229.0	14.54%	8323.6	11.92%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-95	-2.207e+02	0.0000	8661.0	12.32%	6909.7	9.89%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-95	-2.206e+02	0.0000	4693.0	6.67%	3417.0	4.89%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-95	-2.202e+02	0.0000	3640.0	5.18%	2528.5	3.62%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-94	-2.170e+02	0.0000	5976.0	8.50%	4536.5	6.49%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-93	-2.144e+02	0.0000	1936.0	2.75%	1166.7	1.67%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-91	-2.112e+02	0.0000	6858.0	9.75%	5331.9	7.63%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-90	-2.094e+02	0.0000	2453.0	3.49%	1581.0	2.26%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-89	-2.072e+02	0.0000	4810.0	6.84%	3552.3	5.09%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-89	-2.057e+02	0.0000	5255.0	7.47%	3941.0	5.64%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-88	-2.036e+02	0.0000	5363.0	7.63%	4041.3	5.79%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-88	-2.033e+02	0.0000	1095.0	1.56%	558.5	0.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-86	-1.996e+02	0.0000	1071.0	1.52%	545.3	0.78%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-86	-1.996e+02	0.0000	1071.0	1.52%	545.3	0.78%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-86	-1.991e+02	0.0000	7017.0	9.98%	5513.3	7.89%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-85	-1.961e+02	0.0000	13437.0	19.11%	11396.7	16.32%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-84	-1.953e+02	0.0000	6200.0	8.82%	4801.1	6.87%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-83	-1.918e+02	0.0000	12258.0	17.43%	10320.9	14.78%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-82	-1.895e+02	0.0000	7187.0	10.22%	5699.6	8.16%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-82	-1.894e+02	0.0000	8891.0	12.64%	7237.5	10.36%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-81	-1.878e+02	0.0000	6427.0	9.14%	5027.7	7.20%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-81	-1.866e+02	0.0000	1026.0	1.46%	527.2	0.75%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-80	-1.861e+02	0.0000	6257.0	8.90%	4882.8	6.99%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-80	-1.859e+02	0.0000	6994.0	9.94%	5539.4	7.93%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-80	-1.858e+02	0.0000	2694.0	3.83%	1820.7	2.61%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-79	-1.821e+02	0.0000	15947.0	22.68%	13823.1	19.79%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-78	-1.816e+02	0.0000	11891.0	16.91%	10028.1	14.36%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-78	-1.808e+02	0.0000	27304.0	38.82%	24733.2	35.41%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-77	-1.779e+02	0.0000	2193.0	3.12%	1429.0	2.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-76	-1.765e+02	0.0000	5967.0	8.48%	4657.6	6.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-76	-1.760e+02	0.0000	10676.0	15.18%	8930.6	12.79%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-76	-1.751e+02	0.0000	4457.0	6.34%	3337.4	4.78%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-75	-1.740e+02	0.0000	1777.0	2.53%	1106.0	1.58%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-74	-1.710e+02	0.0000	960.0	1.37%	497.5	0.71%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-72	-1.674e+02	0.0000	5082.0	7.23%	3906.8	5.59%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-72	-1.664e+02	0.0000	11555.0	16.43%	9790.4	14.02%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-71	-1.657e+02	0.0000	5202.0	7.40%	4017.7	5.75%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-70	-1.631e+02	0.0000	12126.0	17.24%	10338.5	14.80%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-69	-1.603e+02	0.0000	2949.0	4.19%	2088.9	2.99%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-69	-1.589e+02	0.0000	1502.0	2.14%	917.0	1.31%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-67	-1.548e+02	0.0000	15889.0	22.59%	13923.4	19.93%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-66	-1.539e+02	0.0000	12080.0	17.18%	10343.2	14.81%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-65	-1.513e+02	0.0000	9421.0	13.40%	7888.8	11.29%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-63	-1.471e+02	0.0000	4868.0	6.92%	3784.9	5.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-63	-1.451e+02	0.0000	13962.0	19.85%	12158.8	17.41%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-60	-1.386e+02	0.0000	230.0	0.33%	61.9	0.09%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-58	-1.339e+02	0.0000	9339.0	13.28%	7897.9	11.31%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-57	-1.334e+02	0.0000	4011.0	5.70%	3075.2	4.40%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-56	-1.298e+02	0.0000	753.0	1.07%	395.6	0.57%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-56	-1.296e+02	0.0000	13985.0	19.89%	12273.6	17.57%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-55	-1.274e+02	0.0000	2554.0	3.63%	1836.4	2.63%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-55	-1.273e+02	0.0000	16561.0	23.55%	14736.2	21.10%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-53	-1.229e+02	0.0000	20597.0	29.29%	18640.9	26.69%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-53	-1.220e+02	0.0000	6409.0	9.11%	5263.9	7.54%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-52	-1.211e+02	0.0000	5123.0	7.28%	4105.2	5.88%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-51	-1.180e+02	0.0000	1060.0	1.51%	638.1	0.91%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-50	-1.165e+02	0.0000	4102.0	5.83%	3212.8	4.60%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-48	-1.114e+02	0.0000	1221.0	1.74%	774.1	1.11%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-47	-1.097e+02	0.0000	11071.0	15.74%	9647.2	13.81%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-47	-1.094e+02	0.0000	623.0	0.89%	325.6	0.47%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-46	-1.081e+02	0.0000	5515.0	7.84%	4512.4	6.46%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-45	-1.054e+02	0.0000	19996.0	28.43%	18195.2	26.05%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-45	-1.053e+02	0.0000	1177.0	1.67%	750.1	1.07%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-45	-1.043e+02	0.0000	9447.0	13.43%	8157.0	11.68%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-45	-1.041e+02	0.0000	3543.0	5.04%	2761.1	3.95%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-40	-9.393e+01	0.0000	12522.0	17.81%	11121.5	15.92%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-40	-9.299e+01	0.0000	7350.0	10.45%	6269.6	8.98%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-40	-9.264e+01	0.0000	2423.0	3.45%	1820.0	2.61%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-40	-9.243e+01	0.0000	1084.0	1.54%	699.4	1.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-39	-9.116e+01	0.0000	1754.0	2.49%	1252.3	1.79%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-39	-9.058e+01	0.0000	3596.0	5.11%	2857.4	4.09%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-39	-8.993e+01	0.0000	27093.0	38.52%	25238.9	36.13%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-38	-8.913e+01	0.0000	14271.0	20.29%	12822.1	18.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-38	-8.898e+01	0.0000	7564.0	10.76%	6490.7	9.29%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-38	-8.842e+01	0.0000	1811.0	2.58%	1307.2	1.87%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-37	-8.565e+01	0.0000	3691.0	5.25%	2961.8	4.24%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-36	-8.400e+01	0.0000	4146.0	5.90%	3377.9	4.84%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-35	-8.168e+01	0.0000	6429.0	9.14%	5478.9	7.84%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-35	-8.098e+01	0.0000	2504.0	3.56%	1926.2	2.76%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-34	-7.834e+01	0.0000	10051.0	14.29%	8890.3	12.73%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-32	-7.510e+01	0.0000	6401.0	9.10%	5489.3	7.86%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-32	-7.458e+01	0.0000	5403.0	7.68%	4569.4	6.54%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-31	-7.270e+01	0.0000	4074.0	5.79%	3362.9	4.81%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-30	-7.113e+01	0.0000	3432.0	4.88%	2788.4	3.99%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-30	-7.024e+01	0.0000	4526.0	6.44%	3787.0	5.42%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-30	-6.962e+01	0.0000	5951.0	8.46%	5103.0	7.31%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-29	-6.811e+01	0.0000	12502.0	17.78%	11299.2	16.18%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-29	-6.763e+01	0.0000	2113.0	3.00%	1628.9	2.33%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-29	-6.752e+01	0.0000	7314.0	10.40%	6387.5	9.14%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-29	-6.741e+01	0.0000	1484.0	2.11%	1085.1	1.55%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-27	-6.392e+01	0.0000	2235.0	3.18%	1748.9	2.50%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-27	-6.369e+01	0.0000	1852.0	2.63%	1413.2	2.02%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-26	-6.025e+01	0.0000	1366.0	1.94%	1004.9	1.44%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-26	-6.022e+01	0.0000	5826.0	8.28%	5043.9	7.22%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-24	-5.720e+01	0.0000	1551.0	2.21%	1172.9	1.68%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-24	-5.651e+01	0.0000	6343.0	9.02%	5550.7	7.95%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-23	-5.474e+01	0.0000	413.0	0.59%	238.1	0.34%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-23	-5.433e+01	0.0000	1246.0	1.77%	918.3	1.31%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-23	-5.322e+01	0.0000	3522.0	5.01%	2953.3	4.23%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-22	-5.291e+01	0.0000	550.0	0.78%	346.6	0.50%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-22	-5.173e+01	0.0000	3687.0	5.24%	3112.0	4.46%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-22	-5.117e+01	0.0000	2316.0	3.29%	1870.0	2.68%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-22	-5.077e+01	0.0000	7061.0	10.04%	6266.9	8.97%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-20	-4.784e+01	0.0000	931.0	1.32%	668.1	0.96%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-20	-4.633e+01	0.0000	1084.0	1.54%	802.0	1.15%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-19	-4.595e+01	0.0000	640.0	0.91%	431.3	0.62%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-19	-4.417e+01	0.0000	4691.0	6.67%	4087.9	5.85%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-17	-4.107e+01	0.0000	3504.0	4.98%	3003.5	4.30%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-17	-4.001e+01	0.0000	1016.0	1.44%	762.7	1.09%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-17	-3.980e+01	0.0000	6122.0	8.71%	5464.6	7.82%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-17	-3.951e+01	0.0000	742.0	1.06%	530.8	0.76%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-17	-3.918e+01	0.0000	5151.0	7.32%	4553.8	6.52%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-16	-3.882e+01	0.0000	1439.0	2.05%	1136.9	1.63%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-16	-3.861e+01	0.0000	6208.0	8.83%	5555.4	7.95%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-16	-3.834e+01	0.0000	813.0	1.16%	593.3	0.85%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-16	-3.790e+01	0.0000	9990.0	14.21%	9171.0	13.13%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-15	-3.554e+01	0.0000	1372.0	1.95%	1089.7	1.56%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-15	-3.463e+01	0.0000	3769.0	5.36%	3290.3	4.71%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-14	-3.323e+01	0.0000	996.0	1.42%	766.9	1.10%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-13	-3.166e+01	0.0000	1023.0	1.45%	795.3	1.14%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-12	-2.993e+01	0.0000	8192.0	11.65%	7529.0	10.78%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-12	-2.969e+01	0.0000	3192.0	4.54%	2785.6	3.99%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-12	-2.947e+01	0.0000	13582.0	19.31%	12743.0	18.24%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-12	-2.913e+01	0.0000	4546.0	6.46%	4061.6	5.81%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-12	-2.900e+01	0.0000	2613.0	3.72%	2251.7	3.22%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-12	-2.900e+01	0.0000	12367.0	17.58%	11570.8	16.56%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-12	-2.767e+01	0.0000	2604.0	3.70%	2251.0	3.22%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-11	-2.755e+01	0.0000	1638.0	2.33%	1363.5	1.95%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-11	-2.744e+01	0.0000	590.0	0.84%	433.1	0.62%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-11	-2.721e+01	0.0000	693.0	0.99%	522.7	0.75%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-11	-2.589e+01	0.0000	5676.0	8.07%	5163.2	7.39%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-10	-2.342e+01	0.0000	7543.0	10.73%	6979.6	9.99%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-9	-2.297e+01	0.0000	1772.0	2.52%	1510.1	2.16%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-9	-2.251e+01	0.0000	3081.0	4.38%	2733.6	3.91%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-9	-2.128e+01	0.0000	1811.0	2.58%	1556.2	2.23%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-2.026e+01	0.0000	694.0	0.99%	546.1	0.78%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-8	-2.015e+01	0.0000	1560.0	2.22%	1331.8	1.91%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-8	-1.993e+01	0.0000	6045.0	8.60%	5580.5	7.99%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-8	-1.992e+01	0.0000	245.0	0.35%	163.4	0.23%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-8	-1.975e+01	0.0000	2556.0	3.63%	2261.1	3.24%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-8	-1.917e+01	0.0000	1272.0	1.81%	1073.0	1.54%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-8	-1.914e+01	0.0000	530.0	0.75%	406.6	0.58%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-8	-1.851e+01	0.0000	1861.0	2.65%	1620.6	2.32%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-7	-1.799e+01	0.0000	8102.0	11.52%	7589.0	10.86%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-7	-1.772e+01	0.0000	7423.0	10.55%	6936.1	9.93%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-7	-1.698e+01	0.0000	2664.0	3.79%	2385.6	3.42%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-6	-1.598e+01	0.0000	2962.0	4.21%	2676.2	3.83%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-6	-1.487e+01	0.0000	1492.0	2.12%	1301.3	1.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-6	-1.382e+01	0.0000	136.0	0.19%	87.3	0.12%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-5	-1.362e+01	0.0000	11435.0	16.26%	10904.3	15.61%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-5	-1.298e+01	0.0000	1481.0	2.11%	1304.0	1.87%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-5	-1.258e+01	0.0000	4559.0	6.48%	4242.2	6.07%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-5	-1.247e+01	0.0000	6592.0	9.37%	6209.2	8.89%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-5	-1.193e+01	0.0000	1733.0	2.46%	1549.6	2.22%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-5	-1.174e+01	0.0000	18626.0	26.48%	18001.8	25.77%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-5	-1.168e+01	0.0000	330.0	0.47%	256.9	0.37%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-4	-1.092e+01	0.0000	93.0	0.13%	58.6	0.08%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-4	-1.087e+01	0.0000	476.0	0.68%	389.5	0.56%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-4	-1.065e+01	0.0000	73.0	0.10%	43.4	0.06%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-4	-1.061e+01	0.0000	2631.0	3.74%	2415.5	3.46%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-4	-1.055e+01	0.0000	121.0	0.17%	81.3	0.12%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-4	-1.045e+01	0.0001	1423.0	2.02%	1269.5	1.82%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-4	-1.039e+01	0.0001	2618.0	3.72%	2405.1	3.44%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-4	-9.654e+00	0.0001	1277.0	1.82%	1138.3	1.63%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-4	-9.605e+00	0.0001	832.0	1.18%	722.8	1.03%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-9.413e+00	0.0001	16605.0	23.61%	16073.1	23.01%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-8.876e+00	0.0002	8128.0	11.56%	7770.3	11.12%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-3	-8.762e+00	0.0003	1213.0	1.72%	1086.0	1.55%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-3	-8.710e+00	0.0003	4450.0	6.33%	4193.9	6.00%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-3	-7.753e+00	0.0007	2542.0	3.61%	2364.5	3.38%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-7.550e+00	0.0009	2587.0	3.68%	2410.9	3.45%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-3	-7.216e+00	0.0012	403.0	0.57%	340.8	0.49%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-3	-7.187e+00	0.0013	43.0	0.06%	25.6	0.04%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-3	-7.040e+00	0.0015	867.0	1.23%	773.4	1.11%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-3	-6.974e+00	0.0016	3363.0	4.78%	3168.8	4.54%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-2	-6.655e+00	0.0021	623.0	0.89%	547.8	0.78%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-2	-6.415e+00	0.0027	3813.0	5.42%	3614.7	5.17%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-6.207e+00	0.0033	1889.0	2.69%	1756.3	2.51%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-6.179e+00	0.0034	479.0	0.68%	416.8	0.60%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.714e+00	0.0054	1958.0	2.78%	1829.7	2.62%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-2	-5.511e+00	0.0066	1098.0	1.56%	1006.1	1.44%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.446e+00	0.0070	673.0	0.96%	603.6	0.86%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-2	-4.966e+00	0.0112	565.0	0.80%	505.6	0.72%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-4.915e+00	0.0118	98.0	0.14%	75.9	0.11%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-4.881e+00	0.0121	508.0	0.72%	452.7	0.65%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.617e+00	0.0157	4171.0	5.93%	3999.2	5.73%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-4.395e+00	0.0196	522.0	0.74%	470.0	0.67%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.097e+00	0.0263	3262.0	4.64%	3123.3	4.47%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.080e+00	0.0266	3277.0	4.66%	3138.9	4.49%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.937e+00	0.0306	444.0	0.63%	399.1	0.57%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-3.569e+00	0.0440	2781.0	3.95%	2665.9	3.82%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-3.546e+00	0.0449	489.0	0.70%	445.2	0.64%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.501e+00	0.0468	1158.0	1.65%	1088.1	1.56%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.454e+00	0.0489	3068.0	4.36%	2948.9	4.22%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.342e+00	0.0544	822.0	1.17%	767.0	1.10%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.808e+00	0.0926	4433.0	6.30%	4304.5	6.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.682e+00	0.1046	31.0	0.04%	23.5	0.03%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-2.583e+00	0.1151	234.0	0.33%	211.5	0.30%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.453e+00	0.1305	3402.0	4.84%	3302.2	4.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.447e+00	0.1309	4685.0	6.66%	4564.4	6.53%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.146e+00	0.1763	6365.0	9.05%	6232.6	8.92%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.112e+00	0.1817	2284.0	3.25%	2214.1	3.17%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.004e+00	0.2017	27967.0	39.77%	27636.0	39.56%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.823e+00	0.2409	16.0	0.02%	12.8	0.02%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.819e+00	0.2410	92.0	0.13%	82.8	0.12%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.516e+00	0.3252	4375.0	6.22%	4296.7	6.15%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.446e+00	0.3475	3405.0	4.84%	3341.7	4.78%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.164e+00	0.4590	11041.0	15.70%	10919.8	15.63%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.020e+00	0.5285	1678.0	2.39%	1652.8	2.37%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.012e+00	0.5308	1798.0	2.56%	1771.5	2.54%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.785e-01	0.5472	2742.0	3.90%	2707.5	3.88%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-8.903e-01	0.5956	5926.0	8.43%	5869.3	8.40%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-8.708e-01	0.6053	6625.0	9.42%	6564.7	9.40%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.422e-01	0.6861	142.0	0.20%	140.3	0.20%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.511e-01	0.7490	1263.0	1.80%	1256.9	1.80%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.642e-01	0.8142	10960.0	15.58%	10902.4	15.61%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.966e-01	0.8683	8462.0	12.03%	8428.0	12.07%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.772e-01	0.8823	680.0	0.97%	683.5	0.98%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.260e-01	0.9256	478.0	0.68%	483.4	0.69%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.230e-01	0.9256	430.0	0.61%	435.5	0.62%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.230e-01	0.9256	430.0	0.61%	435.5	0.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.696e-01	0.9697	4619.0	6.57%	4620.3	6.61%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.169e-01	1.0000	2887.0	4.11%	2899.8	4.15%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.132e-01	1.0000	1420.0	2.02%	1433.3	2.05%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.862e-01	1.0000	951.0	1.35%	965.3	1.38%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-2.700e-01	1.0000	1149.0	1.63%	1165.1	1.67%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.408e-01	1.0000	273.0	0.39%	284.7	0.41%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.052e-01	1.0000	2791.0	3.97%	2818.2	4.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.881e-01	1.0000	108.0	0.15%	117.8	0.17%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.789e-01	1.0000	1034.0	1.47%	1058.8	1.52%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.783e-01	1.0000	2189.0	3.11%	2219.4	3.18%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.669e-01	1.0000	238.0	0.34%	252.7	0.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.544e-01	1.0000	3259.0	4.63%	3296.4	4.72%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.408e-01	1.0000	5110.0	7.27%	5152.1	7.38%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.260e-01	1.0000	617.0	0.88%	642.3	0.92%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.050e-01	1.0000	2736.0	3.89%	2783.6	3.99%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-9.794e-02	1.0000	74.0	0.11%	85.3	0.12%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.139e-02	1.0000	2968.0	4.22%	3020.6	4.32%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.858e-02	1.0000	113.0	0.16%	127.6	0.18%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.349e-02	1.0000	6098.0	8.67%	6161.7	8.82%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.019e-02	1.0000	2521.0	3.58%	2574.9	3.69%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.733e-02	1.0000	2040.0	2.90%	2097.1	3.00%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.435e-02	1.0000	3797.0	5.40%	3868.2	5.54%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-4.151e-02	1.0000	9571.0	13.61%	9664.6	13.84%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.894e-02	1.0000	2112.0	3.00%	2179.0	3.12%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.625e-02	1.0000	3199.0	4.55%	3277.0	4.69%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.900e-02	1.0000	4201.0	5.97%	4292.7	6.15%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.629e-02	1.0000	847.0	1.20%	898.4	1.29%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.415e-02	1.0000	302.0	0.43%	335.1	0.48%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.404e-02	1.0000	1002.0	1.42%	1058.9	1.52%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.377e-02	1.0000	541.0	0.77%	584.0	0.84%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.312e-02	1.0000	1942.0	2.76%	2016.2	2.89%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.350e-02	1.0000	434.0	0.62%	478.7	0.69%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.141e-02	1.0000	2272.0	3.23%	2364.3	3.38%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.136e-02	1.0000	781.0	1.11%	840.3	1.20%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.051e-02	1.0000	236.0	0.34%	271.1	0.39%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.034e-03	1.0000	141.0	0.20%	171.0	0.24%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.466e-03	1.0000	450.0	0.64%	512.5	0.73%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.077e-03	1.0000	133.0	0.19%	170.6	0.24%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-7.890e-04	1.0000	5358.0	7.62%	5545.7	7.94%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.270e-04	1.0000	745.0	1.06%	830.8	1.19%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.080e-04	1.0000	936.0	1.33%	1032.8	1.48%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.600e-04	1.0000	1366.0	1.94%	1483.2	2.12%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.880e-04	1.0000	4052.0	5.76%	4239.1	6.07%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-2.770e-04	1.0000	789.0	1.12%	883.4	1.26%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.670e-04	1.0000	238.0	0.34%	293.7	0.42%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.520e-04	1.0000	1247.0	1.77%	1363.7	1.95%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.260e-04	1.0000	1119.0	1.59%	1236.5	1.77%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.140e-04	1.0000	111.0	0.16%	153.6	0.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-5.700e-05	1.0000	14.0	0.02%	33.7	0.05%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-5.300e-05	1.0000	1166.0	1.66%	1293.1	1.85%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-4.600e-05	1.0000	2915.0	4.14%	3105.7	4.45%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-4.000e-05	1.0000	268.0	0.38%	335.9	0.48%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.700e-05	1.0000	1353.0	1.92%	1492.9	2.14%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.300e-05	1.0000	1556.0	2.21%	1714.5	2.45%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.000e-06	1.0000	5611.0	7.98%	5888.5	8.43%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.000e-06	1.0000	608.0	0.86%	718.2	1.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.000e-06	1.0000	16067.0	22.85%	16452.5	23.55%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-3.000e-06	1.0000	233.0	0.33%	307.2	0.44%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.000e-06	1.0000	286.0	0.41%	368.9	0.53%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	12237.0	17.40%	12650.2	18.11%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	3618.0	5.14%	3921.7	5.61%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-0.000e+00	1.0000	1770.0	2.52%	2001.8	2.87%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	120.0	0.17%	198.6	0.28%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	6853.0	9.74%	7296.2	10.45%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-0.000e+00	1.0000	23529.0	33.46%	24157.5	34.58%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	12411.0	17.65%	13043.9	18.67%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-0.000e+00	1.0000	1076.0	1.53%	1323.3	1.89%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	1726.0	2.45%	2036.5	2.92%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-0.000e+00	1.0000	12246.0	17.41%	12932.9	18.51%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	608.0	0.86%	815.6	1.17%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	226.0	0.32%	381.8	0.55%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	8974.0	12.76%	10583.1	15.15%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	14334.0	20.38%	18222.4	26.09%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	7177.0	10.21%	8270.3	11.84%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	9852.0	14.01%	11084.2	15.87%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	13246.0	18.83%	16267.1	23.29%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	2125.0	3.02%	2715.7	3.89%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	1383.0	1.97%	1865.5	2.67%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	11692.0	16.63%	13971.5	20.00%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	8409.0	11.96%	13104.9	18.76%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	1508.0	2.14%	2810.2	4.02%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	4569.0	6.50%	7180.7	10.28%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	2732.0	3.88%	4490.3	6.43%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	2268.0	3.22%	3980.7	5.70%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	1293.0	1.84%	2509.3	3.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	4373.0	6.22%	5175.3	7.41%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	14812.0	21.06%	17780.9	25.46%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	6141.0	8.73%	10116.7	14.48%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	15505.0	22.05%	17294.4	24.76%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	1860.0	2.64%	2338.5	3.35%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	10200.0	14.50%	11316.0	16.20%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	12483.0	17.75%	15242.8	21.82%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	404.0	0.57%	1194.8	1.71%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	2896.0	4.12%	3865.7	5.53%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	3221.0	4.58%	4169.2	5.97%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	18797.0	26.73%	21201.8	30.35%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	13456.0	19.13%	15863.7	22.71%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	14462.0	20.56%	16414.1	23.50%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	15073.0	21.43%	16501.2	23.62%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	6525.0	9.28%	7525.1	10.77%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	9043.0	12.86%	10479.0	15.00%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	171.0	0.24%	381.4	0.55%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	26556.0	37.76%	27662.4	39.60%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	20621.0	29.32%	21881.4	31.33%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	18253.0	25.95%	21454.9	30.71%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	1401.0	1.99%	2092.4	3.00%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	2995.0	4.26%	5357.0	7.67%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	7616.0	10.83%	8743.9	12.52%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	4259.0	6.06%	6116.7	8.76%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	2604.0	3.70%	3551.1	5.08%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	3405.0	4.84%	4546.0	6.51%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	7511.0	10.68%	9320.0	13.34%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	3743.0	5.32%	4411.0	6.31%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	6800.0	9.67%	8304.5	11.89%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1397.0	1.99%	1756.1	2.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	952.0	1.35%	1402.7	2.01%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	5568.0	7.92%	6212.8	8.89%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	22939.0	32.62%	24529.0	35.12%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	6521.0	9.27%	7267.1	10.40%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	3327.0	4.73%	4179.0	5.98%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	6684.0	9.50%	9549.1	13.67%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	9310.0	13.24%	14790.4	21.17%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	5140.0	7.31%	8982.5	12.86%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	407.0	0.58%	611.7	0.88%