Information for 11-TTTAATAGCAGT (Motif 10)

A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
Reverse Opposite:
C T G A A G T C A C G T A C T G A G T C C G A T C T G A A C G T C G A T C G T A C G T A T C G A
p-value:1e-14
log p-value:-3.270e+01
Information Content per bp:1.876
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets90.7 +/- 47.7bp
Average Position of motif in Background80.7 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTAATAGCAGT
TTTAATTGCN--
 A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAATAGCAGT
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATAGCAGT
TTTTTATTGC---
 A C G T A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTTAATAGCAGT
TTTTATGGCM--
 A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTAATAGCAGT
TTTAAT------
 A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTAATAGCAGT-
TTTATTAATTGCNNGN
 A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTAATAGCAGT
TTTNATTGCY--
 A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATAGCAGT-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATAGCAGT-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTAATAGCAGT
TTTTATGGCB--
 A C G T A C G T G A C T C G T A C G T A A G C T C G T A A C T G A G T C C G T A A C T G A G C T
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T A C G T