Information for 20-GCCAAAGTCTGR (Motif 25)

A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A
Reverse Opposite:
A G C T A G T C G T C A C T A G C G T A T G A C A C G T A G C T A C G T C A T G A C T G A G T C
p-value:1e-6
log p-value:-1.451e+01
Information Content per bp:1.825
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif54.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets82.9 +/- 59.4bp
Average Position of motif in Background97.2 +/- 68.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGTCTGR
CGTGCCAAG------
 A C G T A C G T A C G T A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCAAAGTCTGR---
GGCAAAAGTCCAATAA
 A C G T A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCCAAAGTCTGR
----TWGTCTGV
 A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCCAAAGTCTGR-----
NNTNNTGTCTGGNNTNG
 A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGTCTGR
GGTGCCAAGT-----
 A C G T A C G T A C G T A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCCAAAGTCTGR---
-----GGTCTGGCAT
 A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCCAAAGTCTGR------
---AAAACCTGGANHGGR
 A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T C G A T C G A A G T C T G A C G A C T A C T G C T A G G T C A T A G C G C A T T C A G C T A G T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCCAAAGTCTGR
----CTGTCTGG
 A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGTCTGR-
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCCAAAGTCTGR
--VBSYGTCTGG
 A C T G A G T C G T A C C G T A C T G A C G T A A C T G A C G T A G T C A C G T A C T G C T G A
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G