Information for 22-TGGCCAAGGA (Motif 26)

A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A
Reverse Opposite:
A C G T A G T C A G T C C A G T A G C T A C T G A C T G A T G C T A G C G T C A
p-value:1e-5
log p-value:-1.364e+01
Information Content per bp:1.816
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif184.7
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets88.5 +/- 62.4bp
Average Position of motif in Background95.3 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCAAGGA
NNTGCCAAGNN
 A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCAAGGA---
GTTGCCATGGNAAC
 A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCCAAGGA
CGTGCCAAG--
 A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGCCAAGGA
ACTAGCCAATCA
 A C G T A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGCCAAGGA--
NGTTGCCATGGCAA
 A C G T A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGGCCAAGGA
AGGCCTAG--
 A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCAAGGA---
CAGGCCNNGGCCNN
 A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A A C G T A C G T A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PB0200.1_Zfp187_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGCCAAGGA---
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGGCCAAGGA--
--NTCAAGGTCA
 A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A A C G T A C G T
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGCCAAGGA--
GGTTGCCATGGCAA
 A C G T A C G T A C G T A T C G A T C G G T A C A G T C C T G A G T C A A C T G C T A G G T C A A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A