Information for 21-AGACGGCC (Motif 27)

G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C
Reverse Opposite:
A C T G A C T G A T G C A G T C A C T G A C G T A G T C A C G T
p-value:1e-5
log p-value:-1.348e+01
Information Content per bp:1.918
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif298.1
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets91.8 +/- 49.0bp
Average Position of motif in Background104.2 +/- 57.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGCC
CCAGACRSVB
 A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGCC
CCAGACAG--
 A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGACGGCC-----
AAGCATACGCCCAACTT
 A C G T A C G T A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C A C G T A C G T A C G T A C G T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

NEUROD1/MA1109.1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGACGGCC-
GGACAGATGGCAG
 A C G T A C G T A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGACGGCC
TCTAGACA---
 A C G T A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AGACGGCC--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PROX1/MA0794.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGACGGCC--
CAAGACGCCTTA
 A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C A C G T A C G T
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGACGGCC---
---AGGCCTAG
 G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGACGGCC
AACAGATGGC-
 A C G T A C G T A C G T G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGACGGCC
YAACBGCC
 G T C A A C T G C G T A A G T C A C T G A T C G G T A C A G T C
A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C