Information for 8-GCCAGTCAGC (Motif 5)

A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
Reverse Opposite:
C T A G G T A C G A C T C T A G C T G A A G T C A C G T T A C G C T A G T G A C
p-value:1e-450
log p-value:-1.037e+03
Information Content per bp:1.716
Number of Target Sequences with motif27835.0
Percentage of Target Sequences with motif39.36%
Number of Background Sequences with motif21950.3
Percentage of Background Sequences with motif31.27%
Average Position of motif in Targets100.5 +/- 56.0bp
Average Position of motif in Background99.8 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCCAGTCAGC
-CCAGACAG-
 A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCCAGTCAGC
AACCAATCAGA
 A C G T A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCCAGTCAGC
SCTGTCAVTCAV-
 A C G T A C G T A C G T A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCCAGTCAGC-
-TGAGTCAGCA
 A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C A C G T
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCCAGTCAGC---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GCCAGTCAGC
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCCAGTCAGC
-BCAGACWA-
 A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCCAGTCAGC
AGGTGNCAGACAG-
 A C G T A C G T A C G T A C G T A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Mafb/MA0117.2/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GCCAGTCAGC-----
---NGTCAGCANTTT
 A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCCAGTCAGC-
-CCAGACRSVB
 A C T G G A T C A T G C C G T A T C A G G A C T A G T C C G T A C A T G G A T C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C