Information for 6-CCAAARWAAACA (Motif 8)

A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
Reverse Opposite:
C G A T C T A G A G C T A C G T A C G T C G A T A G T C A G C T A G C T A C G T A C T G A C T G
p-value:1e-377
log p-value:-8.700e+02
Information Content per bp:1.783
Number of Target Sequences with motif2199.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif779.4
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets102.4 +/- 54.3bp
Average Position of motif in Background103.1 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--CCAAARWAAACA--
TGCCAAAATAAACANN
 A C G T A C G T A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CCAAARWAAACA
GCTAARTAAACA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCAAARWAAACA
NCTAAGTAAACA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCAAARWAAACA
--AAAGTAAACA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCAAARWAAACA----
-CAAAGTAAACANNNN
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:6
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCAAARWAAACA
--AAAGTAAACA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCAAARWAAACA---
NCWRWGTAAACANSV
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CCAAARWAAACA
---AAATAAACA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCAAARWAAACA
--WAAGTAAAYA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A
A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXC2/MA0846.1/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCAAARWAAACA--
--TAAGTAAACAAA
 A G T C A G T C C G T A C T G A C T G A T C A G G C T A G T C A C G T A T C G A A G T C C G T A A C G T A C G T
A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A