Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 70739)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 70247)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4263	-9.818e+03	0.0000	12259.0	17.33%	2648.3	3.77%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4235	-9.752e+03	0.0000	13487.0	19.07%	3234.5	4.61%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4136	-9.525e+03	0.0000	13201.0	18.66%	3166.5	4.51%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-4091	-9.422e+03	0.0000	12079.0	17.08%	2674.3	3.81%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4057	-9.342e+03	0.0000	11118.0	15.72%	2272.2	3.24%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3946	-9.087e+03	0.0000	14072.0	19.90%	3737.5	5.32%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3422	-7.881e+03	0.0000	8593.0	12.15%	1575.1	2.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2914	-6.712e+03	0.0000	6778.0	9.58%	1126.0	1.60%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2436	-5.611e+03	0.0000	4981.0	7.04%	698.9	1.00%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1524	-3.509e+03	0.0000	4506.0	6.37%	955.1	1.36%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1322	-3.044e+03	0.0000	5921.0	8.37%	1793.0	2.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-797	-1.837e+03	0.0000	18730.0	26.48%	12178.0	17.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-720	-1.660e+03	0.0000	9446.0	13.36%	5027.4	7.16%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-622	-1.433e+03	0.0000	2819.0	3.99%	848.6	1.21%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-481	-1.108e+03	0.0000	1374.0	1.94%	277.6	0.40%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-473	-1.091e+03	0.0000	1242.0	1.76%	229.9	0.33%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-440	-1.014e+03	0.0000	16061.0	22.71%	11362.1	16.19%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-427	-9.853e+02	0.0000	3118.0	4.41%	1258.5	1.79%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-418	-9.635e+02	0.0000	12359.0	17.47%	8305.3	11.83%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-417	-9.618e+02	0.0000	1124.0	1.59%	213.6	0.30%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-367	-8.454e+02	0.0000	9786.0	13.84%	6385.1	9.10%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-361	-8.332e+02	0.0000	1003.0	1.42%	196.4	0.28%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-354	-8.165e+02	0.0000	10979.0	15.52%	7425.6	10.58%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-341	-7.868e+02	0.0000	13832.0	19.56%	9916.0	14.13%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-315	-7.258e+02	0.0000	6962.0	9.84%	4306.4	6.14%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-311	-7.171e+02	0.0000	7395.0	10.46%	4664.9	6.65%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-307	-7.091e+02	0.0000	1007.0	1.42%	231.9	0.33%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-289	-6.675e+02	0.0000	8648.0	12.23%	5769.3	8.22%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-286	-6.597e+02	0.0000	4994.0	7.06%	2875.3	4.10%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-285	-6.565e+02	0.0000	6324.0	8.94%	3909.2	5.57%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-273	-6.297e+02	0.0000	12222.0	17.28%	8880.0	12.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-272	-6.278e+02	0.0000	9410.0	13.30%	6481.3	9.23%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-244	-5.626e+02	0.0000	6457.0	9.13%	4169.5	5.94%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-241	-5.551e+02	0.0000	7851.0	11.10%	5325.7	7.59%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-230	-5.298e+02	0.0000	6018.0	8.51%	3872.0	5.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-216	-4.988e+02	0.0000	6714.0	9.49%	4495.7	6.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-215	-4.971e+02	0.0000	6699.0	9.47%	4486.5	6.39%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-208	-4.800e+02	0.0000	4839.0	6.84%	3015.8	4.30%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-202	-4.671e+02	0.0000	4998.0	7.07%	3162.3	4.51%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-199	-4.592e+02	0.0000	3472.0	4.91%	1990.6	2.84%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-197	-4.551e+02	0.0000	11600.0	16.40%	8783.4	12.51%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-197	-4.548e+02	0.0000	4642.0	6.56%	2900.1	4.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-196	-4.536e+02	0.0000	36392.0	51.45%	32167.0	45.83%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-194	-4.472e+02	0.0000	6642.0	9.39%	4538.3	6.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-191	-4.413e+02	0.0000	3050.0	4.31%	1698.4	2.42%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-189	-4.360e+02	0.0000	6094.0	8.62%	4107.4	5.85%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-189	-4.359e+02	0.0000	6716.0	9.50%	4623.1	6.59%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-179	-4.144e+02	0.0000	3680.0	5.20%	2211.1	3.15%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-177	-4.084e+02	0.0000	3306.0	4.67%	1933.6	2.75%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-171	-3.948e+02	0.0000	10564.0	14.94%	8039.2	11.45%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-167	-3.851e+02	0.0000	9571.0	13.53%	7193.7	10.25%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-158	-3.644e+02	0.0000	8689.0	12.29%	6479.2	9.23%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-158	-3.639e+02	0.0000	1082.0	1.53%	420.8	0.60%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-154	-3.565e+02	0.0000	8821.0	12.47%	6616.1	9.43%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-154	-3.554e+02	0.0000	6436.0	9.10%	4565.9	6.50%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-146	-3.383e+02	0.0000	7745.0	10.95%	5729.2	8.16%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-139	-3.223e+02	0.0000	6101.0	8.63%	4359.2	6.21%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-134	-3.105e+02	0.0000	5485.0	7.76%	3866.5	5.51%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-133	-3.065e+02	0.0000	2292.0	3.24%	1306.2	1.86%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-128	-2.956e+02	0.0000	5432.0	7.68%	3856.4	5.49%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-125	-2.895e+02	0.0000	13407.0	18.96%	10954.6	15.61%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-124	-2.858e+02	0.0000	22201.0	31.39%	19200.9	27.35%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-123	-2.842e+02	0.0000	2511.0	3.55%	1503.4	2.14%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-122	-2.825e+02	0.0000	4473.0	6.32%	3082.6	4.39%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-120	-2.774e+02	0.0000	6986.0	9.88%	5237.9	7.46%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-120	-2.773e+02	0.0000	7609.0	10.76%	5782.0	8.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-119	-2.762e+02	0.0000	5767.0	8.15%	4188.5	5.97%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-119	-2.757e+02	0.0000	11320.0	16.01%	9103.1	12.97%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-119	-2.757e+02	0.0000	6008.0	8.49%	4396.2	6.26%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-118	-2.730e+02	0.0000	23466.0	33.18%	20471.7	29.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-114	-2.644e+02	0.0000	13861.0	19.60%	11473.2	16.35%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-114	-2.637e+02	0.0000	4984.0	7.05%	3553.7	5.06%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-113	-2.624e+02	0.0000	4591.0	6.49%	3225.4	4.60%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-112	-2.591e+02	0.0000	20425.0	28.88%	17644.5	25.14%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-112	-2.586e+02	0.0000	3690.0	5.22%	2486.7	3.54%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-111	-2.563e+02	0.0000	12417.0	17.56%	10178.5	14.50%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-111	-2.556e+02	0.0000	2737.0	3.87%	1724.2	2.46%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-109	-2.522e+02	0.0000	4801.0	6.79%	3426.3	4.88%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-108	-2.488e+02	0.0000	5285.0	7.47%	3846.7	5.48%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-107	-2.480e+02	0.0000	6344.0	8.97%	4762.4	6.78%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-107	-2.470e+02	0.0000	10247.0	14.49%	8237.5	11.74%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-105	-2.423e+02	0.0000	6318.0	8.93%	4756.3	6.78%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-105	-2.420e+02	0.0000	9069.0	12.82%	7193.0	10.25%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-104	-2.398e+02	0.0000	6643.0	9.39%	5047.3	7.19%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-102	-2.366e+02	0.0000	10820.0	15.30%	8797.3	12.53%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-102	-2.358e+02	0.0000	8817.0	12.47%	6989.3	9.96%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-102	-2.355e+02	0.0000	18686.0	26.42%	16116.3	22.96%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-102	-2.353e+02	0.0000	14688.0	20.77%	12366.3	17.62%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-101	-2.342e+02	0.0000	15593.0	22.05%	13215.4	18.83%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-101	-2.335e+02	0.0000	13479.0	19.06%	11252.7	16.03%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-100	-2.325e+02	0.0000	15853.0	22.41%	13466.6	19.19%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-98	-2.269e+02	0.0000	10386.0	14.68%	8440.6	12.02%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-98	-2.260e+02	0.0000	1130.0	1.60%	559.4	0.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-98	-2.260e+02	0.0000	1130.0	1.60%	559.4	0.80%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-96	-2.230e+02	0.0000	2187.0	3.09%	1346.9	1.92%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-96	-2.225e+02	0.0000	6380.0	9.02%	4869.3	6.94%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-95	-2.196e+02	0.0000	15368.0	21.73%	13074.3	18.63%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-94	-2.174e+02	0.0000	6158.0	8.71%	4690.5	6.68%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-93	-2.153e+02	0.0000	7041.0	9.96%	5476.0	7.80%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-93	-2.152e+02	0.0000	2301.0	3.25%	1448.2	2.06%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-93	-2.143e+02	0.0000	5411.0	7.65%	4048.2	5.77%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-92	-2.131e+02	0.0000	10042.0	14.20%	8182.1	11.66%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-90	-2.093e+02	0.0000	6612.0	9.35%	5115.6	7.29%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-88	-2.031e+02	0.0000	12057.0	17.05%	10073.9	14.35%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-85	-1.968e+02	0.0000	1151.0	1.63%	604.6	0.86%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-85	-1.959e+02	0.0000	8911.0	12.60%	7223.7	10.29%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-84	-1.955e+02	0.0000	4900.0	6.93%	3659.5	5.21%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-84	-1.937e+02	0.0000	5015.0	7.09%	3764.2	5.36%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-82	-1.905e+02	0.0000	1568.0	2.22%	919.8	1.31%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-80	-1.864e+02	0.0000	1969.0	2.78%	1235.0	1.76%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-76	-1.756e+02	0.0000	7337.0	10.37%	5881.0	8.38%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-75	-1.746e+02	0.0000	6036.0	8.53%	4721.5	6.73%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-75	-1.745e+02	0.0000	15953.0	22.56%	13858.4	19.74%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-75	-1.737e+02	0.0000	1063.0	1.50%	567.6	0.81%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-74	-1.725e+02	0.0000	6409.0	9.06%	5060.6	7.21%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-74	-1.710e+02	0.0000	993.0	1.40%	520.6	0.74%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-74	-1.707e+02	0.0000	5304.0	7.50%	4087.6	5.82%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-73	-1.688e+02	0.0000	7006.0	9.91%	5608.0	7.99%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-72	-1.669e+02	0.0000	5366.0	7.59%	4154.0	5.92%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-72	-1.667e+02	0.0000	27760.0	39.25%	25249.6	35.97%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-70	-1.624e+02	0.0000	5097.0	7.21%	3932.9	5.60%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-69	-1.608e+02	0.0000	4194.0	5.93%	3148.9	4.49%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-67	-1.556e+02	0.0000	9321.0	13.18%	7769.4	11.07%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-67	-1.556e+02	0.0000	1822.0	2.58%	1172.9	1.67%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-65	-1.517e+02	0.0000	2593.0	3.67%	1809.0	2.58%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-63	-1.472e+02	0.0000	12067.0	17.06%	10358.0	14.76%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-62	-1.438e+02	0.0000	13994.0	19.79%	12185.5	17.36%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-61	-1.408e+02	0.0000	4164.0	5.89%	3183.7	4.54%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-59	-1.373e+02	0.0000	2604.0	3.68%	1852.1	2.64%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-59	-1.368e+02	0.0000	11532.0	16.30%	9914.3	14.12%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-57	-1.315e+02	0.0000	4113.0	5.82%	3168.5	4.51%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-56	-1.308e+02	0.0000	13999.0	19.79%	12268.8	17.48%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-56	-1.307e+02	0.0000	16930.0	23.94%	15052.9	21.45%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-56	-1.305e+02	0.0000	12118.0	17.13%	10498.1	14.96%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-56	-1.297e+02	0.0000	3697.0	5.23%	2810.7	4.00%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-55	-1.280e+02	0.0000	9339.0	13.20%	7920.4	11.28%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-55	-1.271e+02	0.0000	6559.0	9.27%	5373.2	7.65%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-54	-1.249e+02	0.0000	20521.0	29.01%	18535.1	26.41%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-54	-1.247e+02	0.0000	779.0	1.10%	419.2	0.60%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-54	-1.247e+02	0.0000	15722.0	22.23%	13941.5	19.86%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-53	-1.240e+02	0.0000	3034.0	4.29%	2253.3	3.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-52	-1.219e+02	0.0000	27068.0	38.27%	24910.9	35.49%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-51	-1.185e+02	0.0000	1232.0	1.74%	770.1	1.10%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-50	-1.173e+02	0.0000	237.0	0.34%	73.7	0.10%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-50	-1.165e+02	0.0000	1094.0	1.55%	666.6	0.95%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-50	-1.156e+02	0.0000	14319.0	20.25%	12668.2	18.05%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-49	-1.134e+02	0.0000	7329.0	10.36%	6139.3	8.75%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-49	-1.129e+02	0.0000	4537.0	6.41%	3609.6	5.14%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-48	-1.127e+02	0.0000	1089.0	1.54%	668.6	0.95%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-47	-1.102e+02	0.0000	1243.0	1.76%	793.7	1.13%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-46	-1.073e+02	0.0000	12542.0	17.73%	11040.5	15.73%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-46	-1.063e+02	0.0000	5501.0	7.78%	4503.3	6.42%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-45	-1.039e+02	0.0000	633.0	0.89%	338.9	0.48%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-44	-1.024e+02	0.0000	9451.0	13.36%	8165.8	11.63%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-42	-9.852e+01	0.0000	6561.0	9.28%	5507.1	7.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-42	-9.833e+01	0.0000	1313.0	1.86%	871.1	1.24%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-41	-9.467e+01	0.0000	3780.0	5.34%	3003.8	4.28%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-41	-9.447e+01	0.0000	2431.0	3.44%	1819.0	2.59%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-39	-9.020e+01	0.0000	3615.0	5.11%	2873.7	4.09%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-38	-8.831e+01	0.0000	12552.0	17.75%	11180.9	15.93%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-37	-8.732e+01	0.0000	11174.0	15.80%	9881.9	14.08%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-37	-8.581e+01	0.0000	3512.0	4.97%	2798.7	3.99%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-36	-8.303e+01	0.0000	10193.0	14.41%	8984.5	12.80%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-33	-7.804e+01	0.0000	7519.0	10.63%	6507.3	9.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-33	-7.675e+01	0.0000	1098.0	1.55%	740.3	1.05%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-32	-7.414e+01	0.0000	20282.0	28.68%	18729.1	26.68%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-31	-7.297e+01	0.0000	1398.0	1.98%	997.4	1.42%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-30	-7.127e+01	0.0000	5927.0	8.38%	5067.0	7.22%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-30	-7.108e+01	0.0000	1519.0	2.15%	1104.2	1.57%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-30	-7.073e+01	0.0000	2109.0	2.98%	1614.0	2.30%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-30	-7.023e+01	0.0000	5410.0	7.65%	4595.3	6.55%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-29	-6.899e+01	0.0000	1745.0	2.47%	1303.7	1.86%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-29	-6.751e+01	0.0000	2268.0	3.21%	1763.5	2.51%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-28	-6.657e+01	0.0000	6387.0	9.03%	5522.7	7.87%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-28	-6.598e+01	0.0000	7470.0	10.56%	6538.2	9.31%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-28	-6.534e+01	0.0000	2358.0	3.33%	1850.4	2.64%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-28	-6.494e+01	0.0000	1559.0	2.20%	1155.5	1.65%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-27	-6.424e+01	0.0000	1845.0	2.61%	1404.1	2.00%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-27	-6.351e+01	0.0000	955.0	1.35%	651.9	0.93%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-25	-5.984e+01	0.0000	1871.0	2.65%	1441.6	2.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-25	-5.894e+01	0.0000	4152.0	5.87%	3498.6	4.98%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-24	-5.601e+01	0.0000	3819.0	5.40%	3208.2	4.57%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-24	-5.554e+01	0.0000	817.0	1.16%	555.1	0.79%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-23	-5.436e+01	0.0000	3531.0	4.99%	2953.3	4.21%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-21	-4.954e+01	0.0000	5915.0	8.36%	5192.6	7.40%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-21	-4.947e+01	0.0000	1410.0	1.99%	1073.1	1.53%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-20	-4.814e+01	0.0000	9833.0	13.90%	8915.0	12.70%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-20	-4.713e+01	0.0000	6282.0	8.88%	5554.6	7.91%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-20	-4.625e+01	0.0000	6155.0	8.70%	5441.6	7.75%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-20	-4.609e+01	0.0000	771.0	1.09%	538.2	0.77%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-19	-4.496e+01	0.0000	3647.0	5.16%	3110.9	4.43%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-18	-4.224e+01	0.0000	6357.0	8.99%	5662.6	8.07%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-18	-4.210e+01	0.0000	5713.0	8.08%	5056.0	7.20%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-18	-4.207e+01	0.0000	12285.0	17.37%	11326.3	16.14%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-17	-4.049e+01	0.0000	559.0	0.79%	376.3	0.54%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-16	-3.848e+01	0.0000	1486.0	2.10%	1179.0	1.68%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-16	-3.788e+01	0.0000	4706.0	6.65%	4141.2	5.90%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-16	-3.711e+01	0.0000	3825.0	5.41%	3323.4	4.73%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-15	-3.651e+01	0.0000	419.0	0.59%	271.6	0.39%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-15	-3.486e+01	0.0000	471.0	0.67%	317.0	0.45%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-14	-3.250e+01	0.0000	587.0	0.83%	417.1	0.59%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-13	-3.085e+01	0.0000	7060.0	9.98%	6430.2	9.16%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-13	-3.071e+01	0.0000	3161.0	4.47%	2747.7	3.91%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-13	-3.020e+01	0.0000	1845.0	2.61%	1537.9	2.19%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-12	-2.925e+01	0.0000	13559.0	19.17%	12713.7	18.11%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-12	-2.809e+01	0.0000	3082.0	4.36%	2691.7	3.83%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-12	-2.807e+01	0.0000	693.0	0.98%	519.8	0.74%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-12	-2.798e+01	0.0000	7345.0	10.39%	6733.0	9.59%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-11	-2.759e+01	0.0000	689.0	0.97%	517.5	0.74%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-11	-2.673e+01	0.0000	7574.0	10.71%	6965.6	9.92%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-11	-2.645e+01	0.0000	2479.0	3.51%	2141.5	3.05%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-11	-2.644e+01	0.0000	1827.0	2.58%	1540.6	2.19%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-11	-2.601e+01	0.0000	2702.0	3.82%	2351.6	3.35%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-11	-2.571e+01	0.0000	8121.0	11.48%	7502.1	10.69%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-10	-2.416e+01	0.0000	1010.0	1.43%	811.3	1.16%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-10	-2.396e+01	0.0000	661.0	0.93%	504.8	0.72%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-10	-2.304e+01	0.0000	4728.0	6.68%	4284.9	6.10%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-9	-2.115e+01	0.0000	5106.0	7.22%	4663.3	6.64%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-8	-1.929e+01	0.0000	2992.0	4.23%	2673.5	3.81%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-8	-1.885e+01	0.0000	2624.0	3.71%	2330.5	3.32%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-8	-1.884e+01	0.0000	1688.0	2.39%	1456.9	2.08%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-7	-1.807e+01	0.0000	1021.0	1.44%	848.4	1.21%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-7	-1.797e+01	0.0000	1752.0	2.48%	1521.5	2.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-7	-1.792e+01	0.0000	671.0	0.95%	534.7	0.76%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-7	-1.704e+01	0.0000	1011.0	1.43%	844.1	1.20%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-7	-1.703e+01	0.0000	1296.0	1.83%	1105.2	1.57%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-7	-1.634e+01	0.0000	230.0	0.33%	158.1	0.23%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-6	-1.582e+01	0.0000	6572.0	9.29%	6135.5	8.74%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.506e+01	0.0000	1801.0	2.55%	1587.9	2.26%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-6	-1.493e+01	0.0000	851.0	1.20%	709.8	1.01%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-5	-1.374e+01	0.0000	2590.0	3.66%	2342.8	3.34%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-5	-1.362e+01	0.0000	18526.0	26.19%	17842.1	25.42%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-5	-1.342e+01	0.0000	2712.0	3.83%	2461.1	3.51%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-5	-1.304e+01	0.0000	123.0	0.17%	78.9	0.11%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-5	-1.282e+01	0.0000	8221.0	11.62%	7779.7	11.08%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-5	-1.268e+01	0.0000	573.0	0.81%	468.8	0.67%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-5	-1.267e+01	0.0000	1628.0	2.30%	1443.9	2.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.237e+01	0.0000	144.0	0.20%	96.9	0.14%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-1.073e+01	0.0000	2604.0	3.68%	2386.6	3.40%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-4	-1.050e+01	0.0000	542.0	0.77%	450.1	0.64%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-9.514e+00	0.0001	16483.0	23.31%	15937.4	22.71%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-3	-9.175e+00	0.0002	4518.0	6.39%	4248.5	6.05%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-3	-8.729e+00	0.0003	3122.0	4.41%	2907.7	4.14%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-3	-8.459e+00	0.0004	488.0	0.69%	411.4	0.59%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-8.385e+00	0.0004	7969.0	11.27%	7619.2	10.85%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-3	-8.338e+00	0.0004	3790.0	5.36%	3557.9	5.07%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-8.271e+00	0.0004	10942.0	15.47%	10530.5	15.00%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-8.064e+00	0.0005	4233.0	5.98%	3990.1	5.68%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.946e+00	0.0006	6052.0	8.56%	5759.7	8.21%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-3	-7.882e+00	0.0006	343.0	0.48%	282.8	0.40%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-3	-7.816e+00	0.0007	481.0	0.68%	408.1	0.58%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-3	-7.465e+00	0.0010	68.0	0.10%	44.2	0.06%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-6.927e+00	0.0017	1880.0	2.66%	1737.2	2.47%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-2	-6.730e+00	0.0020	3344.0	4.73%	3151.1	4.49%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-2	-6.177e+00	0.0035	4438.0	6.27%	4223.6	6.02%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-5.961e+00	0.0043	3311.0	4.68%	3132.2	4.46%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-2	-5.804e+00	0.0050	1459.0	2.06%	1347.4	1.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-5.172e+00	0.0094	4474.0	6.33%	4279.9	6.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-4.838e+00	0.0131	412.0	0.58%	362.3	0.52%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-4.735e+00	0.0145	845.0	1.19%	772.6	1.10%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-4.431e+00	0.0195	3473.0	4.91%	3319.5	4.73%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-4.402e+00	0.0200	1483.0	2.10%	1388.4	1.98%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.272e+00	0.0227	1179.0	1.67%	1097.6	1.56%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-4.238e+00	0.0234	1981.0	2.80%	1872.6	2.67%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-4.214e+00	0.0239	31.0	0.04%	20.3	0.03%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.131e+00	0.0258	3332.0	4.71%	3188.9	4.54%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-4.062e+00	0.0276	28006.0	39.60%	27521.2	39.21%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-3.608e+00	0.0433	1147.0	1.62%	1075.3	1.53%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.551e+00	0.0457	93.0	0.13%	75.9	0.11%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-3.550e+00	0.0457	17.0	0.02%	10.5	0.01%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.522e+00	0.0466	94.0	0.13%	76.5	0.11%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1	-3.438e+00	0.0505	6062.0	8.57%	5880.3	8.38%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-1	-3.327e+00	0.0563	1208.0	1.71%	1138.7	1.62%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.261e+00	0.0599	1400.0	1.98%	1325.6	1.89%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-3.131e+00	0.0680	501.0	0.71%	460.8	0.66%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.764e+00	0.0978	1728.0	2.44%	1653.6	2.36%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.739e+00	0.0999	11532.0	16.30%	11297.3	16.09%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.388e+00	0.1413	2524.0	3.57%	2441.0	3.48%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.310e+00	0.1523	500.0	0.71%	468.8	0.67%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.022e+00	0.2023	38.0	0.05%	31.7	0.05%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.934e+00	0.2201	1282.0	1.81%	1235.7	1.76%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.892e+00	0.2288	2369.0	3.35%	2302.3	3.28%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.820e+00	0.2451	2864.0	4.05%	2791.3	3.98%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.819e+00	0.2451	8330.0	11.78%	8183.9	11.66%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.673e+00	0.2817	6262.0	8.85%	6148.7	8.76%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.672e+00	0.2817	4633.0	6.55%	4540.0	6.47%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.495e+00	0.3343	71.0	0.10%	64.7	0.09%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.482e+00	0.3377	116.0	0.16%	107.9	0.15%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.392e+00	0.3681	11158.0	15.78%	11008.2	15.68%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.319e+00	0.3948	2547.0	3.60%	2497.4	3.56%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.248e+00	0.4222	2228.0	3.15%	2185.9	3.11%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.210e+00	0.4369	93.0	0.13%	87.3	0.12%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.062e+00	0.5052	5104.0	7.22%	5038.3	7.18%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-9.772e-01	0.5479	639.0	0.90%	626.9	0.89%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.279e-01	0.5736	228.0	0.32%	222.9	0.32%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-8.997e-01	0.5881	2836.0	4.01%	2802.2	3.99%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.897e-01	0.5919	1868.0	2.64%	1844.5	2.63%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.295e-01	0.6925	844.0	1.19%	836.9	1.19%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.136e-01	0.7750	3814.0	5.39%	3791.7	5.40%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.599e-01	0.8150	2754.0	3.89%	2742.2	3.91%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.400e-01	0.8286	4350.0	6.15%	4330.3	6.17%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.179e-01	0.8444	2795.0	3.95%	2786.9	3.97%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.098e-01	0.9377	2028.0	2.87%	2031.8	2.89%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.785e-01	0.9643	4657.0	6.58%	4653.2	6.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.966e-01	1.0000	802.0	1.13%	814.4	1.16%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.953e-01	1.0000	235.0	0.33%	243.8	0.35%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.911e-01	1.0000	2748.0	3.89%	2761.1	3.93%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.575e-01	1.0000	2959.0	4.18%	2976.1	4.24%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.337e-01	1.0000	9728.0	13.75%	9728.4	13.86%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.315e-01	1.0000	854.0	1.21%	871.1	1.24%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-2.158e-01	1.0000	1149.0	1.62%	1169.3	1.67%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.152e-01	1.0000	3364.0	4.76%	3387.8	4.83%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.100e-01	1.0000	536.0	0.76%	552.8	0.79%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.037e-01	1.0000	3234.0	4.57%	3259.1	4.64%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.909e-01	1.0000	143.0	0.20%	153.8	0.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.877e-01	1.0000	487.0	0.69%	504.8	0.72%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.748e-01	1.0000	2279.0	3.22%	2308.1	3.29%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.151e-01	1.0000	1413.0	2.00%	1448.5	2.06%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.103e-01	1.0000	3260.0	4.61%	3305.1	4.71%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-9.917e-02	1.0000	109.0	0.15%	122.9	0.18%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.952e-02	1.0000	415.0	0.59%	441.0	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.952e-02	1.0000	415.0	0.59%	441.0	0.63%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-7.241e-02	1.0000	1310.0	1.85%	1353.6	1.93%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.335e-02	1.0000	471.0	0.67%	501.6	0.71%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.317e-02	1.0000	2135.0	3.02%	2189.5	3.12%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.945e-02	1.0000	305.0	0.43%	332.7	0.47%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-4.419e-02	1.0000	6517.0	9.21%	6599.4	9.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.983e-02	1.0000	950.0	1.34%	997.7	1.42%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-3.968e-02	1.0000	1942.0	2.75%	2004.5	2.86%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.634e-02	1.0000	145.0	0.21%	168.5	0.24%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.927e-02	1.0000	770.0	1.09%	822.1	1.17%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.467e-02	1.0000	1015.0	1.44%	1078.0	1.54%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.433e-02	1.0000	108.0	0.15%	131.8	0.19%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-8.229e-03	1.0000	975.0	1.38%	1043.8	1.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.942e-03	1.0000	530.0	0.75%	585.9	0.83%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.025e-03	1.0000	1329.0	1.88%	1413.1	2.01%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.887e-03	1.0000	4196.0	5.93%	4327.2	6.16%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.910e-03	1.0000	1551.0	2.19%	1644.1	2.34%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.437e-03	1.0000	15.0	0.02%	28.6	0.04%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.875e-03	1.0000	5799.0	8.20%	5967.9	8.50%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.354e-03	1.0000	626.0	0.89%	698.1	0.99%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.480e-04	1.0000	998.0	1.41%	1091.6	1.56%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.330e-04	1.0000	244.0	0.34%	296.3	0.42%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.310e-04	1.0000	2518.0	3.56%	2662.1	3.79%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-4.770e-04	1.0000	813.0	1.15%	903.6	1.29%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.720e-04	1.0000	141.0	0.20%	186.5	0.27%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.400e-05	1.0000	6171.0	8.73%	6406.1	9.13%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.500e-05	1.0000	298.0	0.42%	365.0	0.52%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-7.000e-05	1.0000	285.0	0.40%	351.4	0.50%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.100e-05	1.0000	1216.0	1.72%	1343.9	1.91%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.000e-05	1.0000	5359.0	7.58%	5599.0	7.98%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.700e-05	1.0000	1188.0	1.68%	1325.8	1.89%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.000e-06	1.0000	1099.0	1.55%	1237.3	1.76%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.000e-06	1.0000	274.0	0.39%	349.0	0.50%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.000e-06	1.0000	1389.0	1.96%	1550.5	2.21%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.000e-06	1.0000	1732.0	2.45%	1923.7	2.74%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-0.000e+00	1.0000	623.0	0.88%	748.1	1.07%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	237.0	0.34%	319.0	0.45%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	4112.0	5.81%	4395.9	6.26%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-0.000e+00	1.0000	684.0	0.97%	822.0	1.17%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	16156.0	22.84%	16626.5	23.69%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-0.000e+00	1.0000	227.0	0.32%	314.0	0.45%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-0.000e+00	1.0000	23276.0	32.91%	23768.1	33.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	12388.0	17.52%	12842.0	18.30%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	3750.0	5.30%	4050.5	5.77%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	6831.0	9.66%	7239.3	10.31%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	115.0	0.16%	187.8	0.27%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	442.0	0.62%	579.7	0.83%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	12373.0	17.49%	12909.8	18.39%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-0.000e+00	1.0000	1814.0	2.56%	2095.1	2.98%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-0.000e+00	1.0000	1091.0	1.54%	1329.5	1.89%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	604.0	0.85%	788.1	1.12%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-0.000e+00	1.0000	12315.0	17.41%	12977.3	18.49%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	233.0	0.33%	364.1	0.52%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	8950.0	12.65%	10536.0	15.01%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	14520.0	20.53%	18393.5	26.20%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	7183.0	10.16%	8233.4	11.73%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	9876.0	13.96%	10997.0	15.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	13431.0	18.99%	16327.9	23.26%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	2182.0	3.09%	2811.5	4.01%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	1423.0	2.01%	1846.4	2.63%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	11609.0	16.41%	14020.7	19.97%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	8287.0	11.72%	13244.0	18.87%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	1487.0	2.10%	2858.9	4.07%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	4558.0	6.44%	7269.1	10.36%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	2715.0	3.84%	4582.8	6.53%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	2255.0	3.19%	4003.8	5.70%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	1280.0	1.81%	2547.9	3.63%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	4401.0	6.22%	5300.8	7.55%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	14675.0	20.75%	17824.6	25.39%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	6260.0	8.85%	10364.3	14.77%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	15434.0	21.82%	17368.2	24.74%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	1906.0	2.69%	2296.6	3.27%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	10489.0	14.83%	11622.0	16.56%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	0.000e+00	1.0000	2900.0	4.10%	3337.7	4.76%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	12248.0	17.32%	15257.8	21.74%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	414.0	0.59%	1223.3	1.74%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	3011.0	4.26%	3944.1	5.62%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	3355.0	4.74%	4233.8	6.03%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	18887.0	26.70%	21063.8	30.01%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	13515.0	19.11%	16013.6	22.81%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	14571.0	20.60%	16513.9	23.53%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	15260.0	21.58%	16551.8	23.58%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	6632.0	9.38%	7533.1	10.73%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	9062.0	12.81%	10410.3	14.83%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	168.0	0.24%	386.0	0.55%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	26922.0	38.06%	28068.7	39.99%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	20631.0	29.17%	22067.9	31.44%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	18465.0	26.11%	21715.7	30.94%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	1433.0	2.03%	2168.4	3.09%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	2932.0	4.15%	5606.3	7.99%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	7703.0	10.89%	8937.3	12.73%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	4314.0	6.10%	6364.0	9.07%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	2628.0	3.72%	3712.4	5.29%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	3418.0	4.83%	4723.2	6.73%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	7631.0	10.79%	9473.5	13.50%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	3753.0	5.31%	4631.6	6.60%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	6914.0	9.78%	8609.1	12.27%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1406.0	1.99%	1848.2	2.63%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	951.0	1.34%	1497.4	2.13%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	5630.0	7.96%	6375.2	9.08%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	23003.0	32.52%	24765.3	35.28%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	6492.0	9.18%	7275.6	10.37%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	3380.0	4.78%	4170.8	5.94%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	6717.0	9.50%	9759.0	13.90%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	9173.0	12.97%	14884.0	21.20%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	5036.0	7.12%	9050.7	12.89%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	409.0	0.58%	607.4	0.87%