Information for 18-GGGTTAGGGTTA (Motif 23)

C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
Reverse Opposite:
C A G T C T G A G T C A A G T C G A T C G T A C A C G T C T G A C T G A T G A C A G T C A G T C
p-value:1e-4
log p-value:-1.005e+01
Information Content per bp:1.684
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif371.1
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets101.5 +/- 49.5bp
Average Position of motif in Background98.9 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)3.90
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGGTTAGGGTTA
GGATTAGC----
 C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGTTAGGGTTA
AGGTCAAGGTCA
 C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Dmbx1/MA0883.1/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGGTTAGGGTTA
TGAACCGGATTAATGAA-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGGTTAGGGTTA
TGAACCGGATTAATGAA-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGGTTAGGGTTA
GGGATTANN----
 A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T A C G T

PSE(SNAPc)/K562-mStart-Seq/Homer

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GGGTTAGGGTTA---
CTTTTHRSTTAKGGTGABTW
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A A C G T A C G T A C G T
G A T C G C A T C A G T C G A T G C A T G C T A T C A G T A G C G C A T A G C T C T G A A C G T C T A G C T A G A G C T C T A G C T G A A T G C G A C T G C A T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGGTTAGGGTTA-
NMMNBAAAGGGTTAA
 A C G T A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A A C G T
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGGTTAGGGTTA
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGTTAGGGTTA
AGGTCAAGGTCA
 C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GGGTTAGGGTTA
TTGCCCGGATTAGG----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G G A C T A G C T T G C A C A T G C A T G T C A G C A G T A G C T G T C A
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T A C G T