Information for 3-GAAGGATTTT (Motif 4)

C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T
Reverse Opposite:
T G C A C G T A G C T A G T C A G A C T G T A C T A G C G A C T A C G T G A T C
p-value:1e-13
log p-value:-3.137e+01
Information Content per bp:1.646
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif12.72%
Number of Background Sequences with motif2897.3
Percentage of Background Sequences with motif5.97%
Average Position of motif in Targets100.6 +/- 53.9bp
Average Position of motif in Background101.4 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAAGGATTTT--
-AAGGATATNTN
 C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T A C G T A C G T
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAAGGATTTT
-NGGGATTA-
 C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAAGGATTTT---
CTACTAGGATGTNNTN
 A C G T A C G T A C G T C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAAGGATTTT-
-VRGGATTARN
 C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGATTTT
NGAAGC-----
 A C G T C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAAGGATTTT
CNGTGATTTN
 C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAAGGATTTT
--NGGATTAA
 C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGATTTT--
NTTATTGATTTTTT
 A C G T A C G T C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T A C G T A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

ONECUT2/MA0756.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGATTTT--
ATTATCGATTTTTT
 A C G T A C G T C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T A C G T A C G T
C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

ONECUT1/MA0679.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGATTTT--
ANTATCGATTTTTN
 A C G T A C G T C T A G T G C A C T G A A T C G C A T G C T G A C A G T C G A T G C A T A C G T A C G T A C G T
C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T