Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 920)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48671)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-39	-9.090e+01	0.0000	88.0	9.57%	769.0	1.58%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-26	-6.202e+01	0.0000	96.0	10.43%	1354.8	2.79%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-20	-4.775e+01	0.0000	109.0	11.85%	2056.7	4.24%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-8	-1.996e+01	0.0000	264.0	28.70%	9949.1	20.50%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-8	-1.901e+01	0.0000	154.0	16.74%	5093.8	10.49%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-7	-1.651e+01	0.0000	89.0	9.67%	2581.6	5.32%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.513e+01	0.0000	109.0	11.85%	3484.2	7.18%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-6	-1.465e+01	0.0000	138.0	15.00%	4760.4	9.81%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-5	-1.281e+01	0.0001	105.0	11.41%	3494.2	7.20%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-5	-1.242e+01	0.0002	41.0	4.46%	984.3	2.03%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-5	-1.234e+01	0.0002	72.0	7.83%	2164.1	4.46%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.224e+01	0.0002	118.0	12.83%	4102.2	8.45%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-5	-1.217e+01	0.0002	203.0	22.07%	7967.8	16.42%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.206e+01	0.0002	79.0	8.59%	2466.8	5.08%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-5	-1.166e+01	0.0002	42.0	4.57%	1053.3	2.17%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-4	-1.068e+01	0.0006	97.0	10.54%	3331.3	6.86%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-4	-1.046e+01	0.0007	149.0	16.20%	5670.1	11.68%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-4	-1.021e+01	0.0009	78.0	8.48%	2562.9	5.28%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-4	-9.928e+00	0.0011	106.0	11.52%	3793.2	7.81%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-4	-9.693e+00	0.0013	120.0	13.04%	4440.3	9.15%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-4	-9.426e+00	0.0016	22.0	2.39%	452.1	0.93%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-9.396e+00	0.0016	46.0	5.00%	1319.1	2.72%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4	-9.344e+00	0.0016	53.0	5.76%	1598.0	3.29%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-3	-9.179e+00	0.0018	34.0	3.70%	877.7	1.81%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-3	-9.105e+00	0.0019	106.0	11.52%	3876.7	7.99%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-9.064e+00	0.0019	8.0	0.87%	75.3	0.16%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-3	-8.997e+00	0.0020	69.0	7.50%	2280.8	4.70%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-8.997e+00	0.0020	96.0	10.43%	3444.7	7.10%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-3	-8.934e+00	0.0020	100.0	10.87%	3627.5	7.47%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-3	-8.902e+00	0.0020	208.0	22.61%	8652.6	17.83%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-8.875e+00	0.0020	155.0	16.85%	6142.7	12.66%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.587e+00	0.0025	46.0	5.00%	1368.9	2.82%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-8.359e+00	0.0030	64.0	6.96%	2121.1	4.37%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-3	-8.199e+00	0.0035	236.0	25.65%	10125.5	20.86%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-8.176e+00	0.0035	79.0	8.59%	2779.1	5.73%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-8.172e+00	0.0035	156.0	16.96%	6284.1	12.95%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-8.169e+00	0.0035	12.0	1.30%	186.0	0.38%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-7.871e+00	0.0043	150.0	16.30%	6044.8	12.45%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-7.760e+00	0.0047	201.0	21.85%	8496.0	17.50%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-7.721e+00	0.0047	62.0	6.74%	2089.2	4.30%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.714e+00	0.0047	353.0	38.37%	16068.7	33.11%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.706e+00	0.0047	87.0	9.46%	3177.1	6.55%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.572e+00	0.0051	73.0	7.93%	2575.1	5.31%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-7.526e+00	0.0052	120.0	13.04%	4693.5	9.67%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-7.525e+00	0.0052	64.0	6.96%	2191.7	4.52%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-3	-7.460e+00	0.0054	52.0	5.65%	1690.9	3.48%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-3	-7.346e+00	0.0059	29.0	3.15%	782.1	1.61%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-7.302e+00	0.0060	38.0	4.13%	1132.7	2.33%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.249e+00	0.0062	32.0	3.48%	901.6	1.86%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.216e+00	0.0063	77.0	8.37%	2785.2	5.74%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-7.146e+00	0.0066	109.0	11.85%	4235.9	8.73%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.093e+00	0.0068	22.0	2.39%	538.8	1.11%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-7.091e+00	0.0068	51.0	5.54%	1678.0	3.46%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-3	-6.945e+00	0.0076	203.0	22.07%	8731.9	17.99%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-6.890e+00	0.0079	196.0	21.30%	8400.7	17.31%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-6.816e+00	0.0084	109.0	11.85%	4277.3	8.81%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-2	-6.782e+00	0.0085	39.0	4.24%	1206.7	2.49%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-6.742e+00	0.0087	19.0	2.07%	447.3	0.92%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-2	-6.670e+00	0.0092	51.0	5.54%	1711.3	3.53%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.614e+00	0.0096	52.0	5.65%	1758.7	3.62%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-6.572e+00	0.0098	96.0	10.43%	3711.1	7.65%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-6.504e+00	0.0103	20.0	2.17%	492.9	1.02%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-6.384e+00	0.0115	64.0	6.96%	2297.4	4.73%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-2	-6.337e+00	0.0118	128.0	13.91%	5230.5	10.78%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.085e+00	0.0150	78.0	8.48%	2952.2	6.08%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.957e+00	0.0168	166.0	18.04%	7109.9	14.65%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-2	-5.846e+00	0.0185	112.0	12.17%	4550.7	9.38%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-5.786e+00	0.0193	72.0	7.83%	2716.2	5.60%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.725e+00	0.0202	120.0	13.04%	4945.5	10.19%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-5.680e+00	0.0209	32.0	3.48%	998.8	2.06%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-2	-5.477e+00	0.0252	83.0	9.02%	3254.1	6.70%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-5.405e+00	0.0267	166.0	18.04%	7210.7	14.86%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.266e+00	0.0303	24.0	2.61%	705.2	1.45%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-2	-5.174e+00	0.0328	231.0	25.11%	10468.6	21.57%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.146e+00	0.0332	114.0	12.39%	4752.8	9.79%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-5.128e+00	0.0334	50.0	5.43%	1808.4	3.73%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-4.998e+00	0.0375	67.0	7.28%	2583.1	5.32%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-4.992e+00	0.0375	89.0	9.67%	3598.1	7.41%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-4.766e+00	0.0461	223.0	24.24%	10162.0	20.94%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-4.731e+00	0.0472	16.0	1.74%	427.6	0.88%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.593e+00	0.0535	165.0	17.93%	7323.6	15.09%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.584e+00	0.0535	54.0	5.87%	2045.0	4.21%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-4.506e+00	0.0569	191.0	20.76%	8627.3	17.77%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-1	-4.380e+00	0.0638	100.0	10.87%	4212.8	8.68%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-4.372e+00	0.0638	64.0	6.96%	2525.7	5.20%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.233e+00	0.0722	57.0	6.20%	2222.0	4.58%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.208e+00	0.0732	148.0	16.09%	6569.1	13.53%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-4.197e+00	0.0732	62.0	6.74%	2456.8	5.06%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.166e+00	0.0746	39.0	4.24%	1421.0	2.93%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-4.160e+00	0.0746	79.0	8.59%	3253.6	6.70%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.890e+00	0.0962	179.0	19.46%	8175.3	16.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.873e+00	0.0968	24.0	2.61%	800.7	1.65%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.841e+00	0.0988	57.0	6.20%	2273.9	4.68%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.806e+00	0.1013	2.0	0.22%	12.8	0.03%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-3.799e+00	0.1013	223.0	24.24%	10406.9	21.44%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1	-3.746e+00	0.1052	105.0	11.41%	4566.9	9.41%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.729e+00	0.1060	9.0	0.98%	216.6	0.45%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.698e+00	0.1082	48.0	5.22%	1878.0	3.87%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.675e+00	0.1096	31.0	3.37%	1118.2	2.30%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.630e+00	0.1135	44.0	4.78%	1704.1	3.51%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.626e+00	0.1135	30.0	3.26%	1079.8	2.22%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.593e+00	0.1154	16.0	1.74%	490.7	1.01%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-1	-3.526e+00	0.1222	164.0	17.83%	7517.8	15.49%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.467e+00	0.1284	55.0	5.98%	2232.5	4.60%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.467e+00	0.1284	211.0	22.93%	9892.1	20.38%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-1	-3.465e+00	0.1284	42.0	4.57%	1633.1	3.36%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-1	-3.423e+00	0.1305	16.0	1.74%	501.4	1.03%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-3.372e+00	0.1360	188.0	20.43%	8759.1	18.05%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.310e+00	0.1434	8.0	0.87%	197.4	0.41%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.302e+00	0.1434	33.0	3.59%	1245.2	2.57%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.259e+00	0.1482	255.0	27.72%	12190.2	25.12%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.242e+00	0.1494	91.0	9.89%	3986.0	8.21%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.171e+00	0.1589	46.0	5.00%	1855.2	3.82%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.139e+00	0.1626	32.0	3.48%	1218.3	2.51%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.128e+00	0.1630	162.0	17.61%	7520.8	15.49%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.107e+00	0.1651	104.0	11.30%	4648.6	9.58%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.105e+00	0.1651	118.0	12.83%	5337.9	11.00%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-3.004e+00	0.1798	70.0	7.61%	3017.1	6.22%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.989e+00	0.1811	19.0	2.07%	659.2	1.36%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.900e+00	0.1963	5.0	0.54%	107.5	0.22%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.892e+00	0.1963	84.0	9.13%	3716.6	7.66%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.882e+00	0.1966	197.0	21.41%	9356.9	19.28%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.874e+00	0.1966	35.0	3.80%	1386.1	2.86%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.861e+00	0.1974	77.0	8.37%	3382.7	6.97%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-1	-2.833e+00	0.2015	6.0	0.65%	144.4	0.30%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-2.831e+00	0.2015	88.0	9.57%	3924.4	8.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.831e+00	0.2015	8.0	0.87%	218.8	0.45%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.828e+00	0.2015	33.0	3.59%	1300.5	2.68%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.823e+00	0.2015	51.0	5.54%	2141.0	4.41%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.818e+00	0.2015	192.0	20.87%	9122.6	18.80%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-2.813e+00	0.2015	76.0	8.26%	3343.4	6.89%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.795e+00	0.2015	7.0	0.76%	182.3	0.38%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.789e+00	0.2015	57.0	6.20%	2432.2	5.01%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.788e+00	0.2015	35.0	3.80%	1397.4	2.88%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.764e+00	0.2015	113.0	12.28%	5172.0	10.66%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.758e+00	0.2015	47.0	5.11%	1963.0	4.04%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-2.732e+00	0.2033	185.0	20.11%	8794.7	18.12%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.626e+00	0.2244	257.0	27.93%	12507.3	25.77%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-1	-2.605e+00	0.2274	6.0	0.65%	153.7	0.32%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.603e+00	0.2274	75.0	8.15%	3337.8	6.88%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-2.580e+00	0.2300	102.0	11.09%	4671.0	9.62%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-2.571e+00	0.2304	174.0	18.91%	8287.9	17.08%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.540e+00	0.2359	78.0	8.48%	3497.8	7.21%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1	-2.535e+00	0.2359	264.0	28.70%	12901.5	26.58%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-2.466e+00	0.2508	21.0	2.28%	796.2	1.64%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-2.416e+00	0.2617	137.0	14.89%	6465.8	13.32%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-2.399e+00	0.2644	105.0	11.41%	4866.4	10.03%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.375e+00	0.2691	200.0	21.74%	9676.2	19.94%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-2.360e+00	0.2711	19.0	2.07%	717.3	1.48%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.357e+00	0.2711	22.0	2.39%	853.6	1.76%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.336e+00	0.2741	26.0	2.83%	1039.0	2.14%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.314e+00	0.2783	140.0	15.22%	6647.4	13.70%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.305e+00	0.2791	17.0	1.85%	633.3	1.30%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.281e+00	0.2841	26.0	2.83%	1046.7	2.16%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.256e+00	0.2892	9.0	0.98%	291.0	0.60%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.225e+00	0.2966	152.0	16.52%	7283.9	15.01%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.221e+00	0.2966	325.0	35.33%	16187.1	33.35%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.174e+00	0.3081	36.0	3.91%	1532.9	3.16%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.121e+00	0.3229	29.0	3.15%	1208.7	2.49%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.110e+00	0.3245	24.0	2.61%	975.0	2.01%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.107e+00	0.3245	55.0	5.98%	2464.0	5.08%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.102e+00	0.3245	18.0	1.96%	699.3	1.44%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.102e+00	0.3245	135.0	14.67%	6461.9	13.31%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.097e+00	0.3245	55.0	5.98%	2465.8	5.08%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.074e+00	0.3261	373.0	40.54%	18758.6	38.65%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.054e+00	0.3305	6.0	0.65%	179.3	0.37%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.044e+00	0.3319	115.0	12.50%	5468.8	11.27%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.008e+00	0.3422	194.0	21.09%	9505.4	19.58%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.006e+00	0.3422	51.0	5.54%	2288.3	4.71%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.929e+00	0.3656	9.0	0.98%	313.0	0.64%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.911e+00	0.3703	6.0	0.65%	188.0	0.39%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.899e+00	0.3726	15.0	1.63%	584.1	1.20%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.888e+00	0.3745	32.0	3.48%	1387.9	2.86%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.882e+00	0.3745	79.0	8.59%	3705.7	7.63%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.877e+00	0.3745	41.0	4.46%	1825.6	3.76%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.874e+00	0.3745	24.0	2.61%	1007.1	2.07%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.870e+00	0.3745	25.0	2.72%	1055.3	2.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.846e+00	0.3797	24.0	2.61%	1011.9	2.08%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.832e+00	0.3827	19.0	2.07%	777.3	1.60%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.790e+00	0.3972	3.0	0.33%	75.0	0.15%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.777e+00	0.3998	303.0	32.93%	15248.9	31.42%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.755e+00	0.4065	143.0	15.54%	6989.5	14.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.739e+00	0.4110	23.0	2.50%	979.5	2.02%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.684e+00	0.4319	3.0	0.33%	78.7	0.16%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.651e+00	0.4441	73.0	7.93%	3468.0	7.15%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.629e+00	0.4513	19.0	2.07%	804.7	1.66%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.627e+00	0.4513	2.0	0.22%	43.3	0.09%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.612e+00	0.4543	41.0	4.46%	1879.5	3.87%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.608e+00	0.4543	19.0	2.07%	807.1	1.66%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.603e+00	0.4543	9.0	0.98%	340.4	0.70%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.598e+00	0.4543	46.0	5.00%	2130.2	4.39%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.583e+00	0.4577	44.0	4.78%	2034.9	4.19%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.577e+00	0.4580	165.0	17.93%	8190.3	16.87%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.577e+00	0.4580	123.0	13.37%	6033.3	12.43%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.565e+00	0.4589	52.0	5.65%	2437.3	5.02%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.560e+00	0.4589	147.0	15.98%	7271.9	14.98%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.559e+00	0.4589	20.0	2.17%	862.7	1.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.548e+00	0.4597	109.0	11.85%	5328.8	10.98%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.526e+00	0.4676	6.0	0.65%	212.4	0.44%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.511e+00	0.4724	80.0	8.70%	3864.1	7.96%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.492e+00	0.4788	106.0	11.52%	5195.3	10.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.491e+00	0.4788	183.0	19.89%	9158.6	18.87%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.480e+00	0.4801	124.0	13.48%	6122.2	12.61%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.458e+00	0.4883	496.0	53.91%	25558.0	52.66%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.434e+00	0.4977	32.0	3.48%	1471.8	3.03%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.421e+00	0.5015	80.0	8.70%	3894.0	8.02%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.413e+00	0.5033	38.0	4.13%	1774.3	3.66%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.410e+00	0.5033	229.0	24.89%	11586.0	23.87%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.391e+00	0.5098	8.0	0.87%	314.6	0.65%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.384e+00	0.5109	41.0	4.46%	1931.5	3.98%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.383e+00	0.5109	31.0	3.37%	1433.0	2.95%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.338e+00	0.5295	9.0	0.98%	366.6	0.76%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.333e+00	0.5300	224.0	24.35%	11366.6	23.42%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.320e+00	0.5342	42.0	4.57%	1997.2	4.11%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.312e+00	0.5359	39.0	4.24%	1848.6	3.81%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.291e+00	0.5451	38.0	4.13%	1803.9	3.72%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.277e+00	0.5502	174.0	18.91%	8796.3	18.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.266e+00	0.5535	35.0	3.80%	1658.8	3.42%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.264e+00	0.5535	43.0	4.67%	2062.4	4.25%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.247e+00	0.5589	115.0	12.50%	5755.7	11.86%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.241e+00	0.5599	120.0	13.04%	6016.3	12.40%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.240e+00	0.5599	44.0	4.78%	2119.4	4.37%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.225e+00	0.5636	5.0	0.54%	190.7	0.39%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.216e+00	0.5666	17.0	1.85%	770.0	1.59%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.198e+00	0.5741	121.0	13.15%	6087.2	12.54%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.187e+00	0.5782	6.0	0.65%	240.7	0.50%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.173e+00	0.5833	272.0	29.57%	13966.1	28.77%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.160e+00	0.5882	8.0	0.87%	338.2	0.70%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.140e+00	0.5978	17.0	1.85%	783.2	1.61%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.130e+00	0.6014	12.0	1.30%	537.0	1.11%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.109e+00	0.6114	8.0	0.87%	344.1	0.71%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.104e+00	0.6117	76.0	8.26%	3802.7	7.83%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.087e+00	0.6193	70.0	7.61%	3499.0	7.21%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.087e+00	0.6193	7.0	0.76%	298.2	0.61%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.083e+00	0.6193	26.0	2.83%	1247.1	2.57%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.073e+00	0.6202	62.0	6.74%	3092.2	6.37%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.059e+00	0.6262	75.0	8.15%	3768.6	7.76%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.055e+00	0.6264	57.0	6.20%	2841.2	5.85%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.053e+00	0.6264	9.0	0.98%	400.2	0.82%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.047e+00	0.6264	32.0	3.48%	1561.0	3.22%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.032e+00	0.6331	41.0	4.46%	2026.7	4.18%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.018e+00	0.6390	57.0	6.20%	2854.6	5.88%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.009e+00	0.6421	7.0	0.76%	307.6	0.63%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.960e-01	0.6479	99.0	10.76%	5041.0	10.39%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-9.915e-01	0.6481	63.0	6.85%	3174.6	6.54%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.735e-01	0.6572	19.0	2.07%	916.8	1.89%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.725e-01	0.6572	13.0	1.41%	612.3	1.26%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.723e-01	0.6572	108.0	11.74%	5520.9	11.37%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.650e-01	0.6572	418.0	45.43%	21786.8	44.89%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-9.575e-01	0.6572	54.0	5.87%	2721.0	5.61%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-9.473e-01	0.6613	42.0	4.57%	2104.8	4.34%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.311e-01	0.6694	84.0	9.13%	4290.3	8.84%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.249e-01	0.6709	214.0	23.26%	11092.3	22.85%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.221e-01	0.6709	13.0	1.41%	621.1	1.28%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.925e-01	0.6875	27.0	2.93%	1346.9	2.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.728e-01	0.6985	111.0	12.07%	5729.9	11.81%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-8.601e-01	0.7046	92.0	10.00%	4742.4	9.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-8.389e-01	0.7170	28.0	3.04%	1414.0	2.91%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.363e-01	0.7170	41.0	4.46%	2090.2	4.31%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-8.266e-01	0.7203	5.0	0.54%	229.3	0.47%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-8.218e-01	0.7209	66.0	7.17%	3401.9	7.01%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-8.215e-01	0.7209	192.0	20.87%	10010.6	20.62%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.214e-01	0.7209	45.0	4.89%	2304.2	4.75%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.124e-01	0.7209	212.0	23.04%	11068.6	22.80%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.109e-01	0.7209	1.0	0.11%	31.4	0.06%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-8.102e-01	0.7209	153.0	16.63%	7969.9	16.42%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-8.080e-01	0.7209	169.0	18.37%	8811.1	18.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.050e-01	0.7209	3.0	0.33%	130.2	0.27%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.019e-01	0.7209	57.0	6.20%	2939.8	6.06%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-8.004e-01	0.7209	21.0	2.28%	1061.0	2.19%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-7.908e-01	0.7209	25.0	2.72%	1271.1	2.62%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.877e-01	0.7209	42.0	4.57%	2160.7	4.45%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.854e-01	0.7209	7.0	0.76%	337.6	0.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.841e-01	0.7209	72.0	7.83%	3733.5	7.69%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.778e-01	0.7209	5.0	0.54%	235.8	0.49%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.540e-01	0.7296	74.0	8.04%	3853.4	7.94%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-7.340e-01	0.7416	7.0	0.76%	346.0	0.71%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-7.319e-01	0.7416	3.0	0.33%	137.3	0.28%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-7.208e-01	0.7461	23.0	2.50%	1187.3	2.45%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.128e-01	0.7494	6.0	0.65%	296.4	0.61%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.815e-01	0.7705	107.0	11.63%	5633.5	11.61%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.747e-01	0.7730	4.0	0.43%	196.6	0.40%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-6.658e-01	0.7772	124.0	13.48%	6541.8	13.48%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.545e-01	0.7832	10.0	1.09%	518.1	1.07%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.215e-01	0.8067	14.0	1.52%	739.4	1.52%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.141e-01	0.8098	52.0	5.65%	2763.5	5.69%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.137e-01	0.8098	64.0	6.96%	3400.1	7.01%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.122e-01	0.8098	8.0	0.87%	420.8	0.87%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.108e-01	0.8098	9.0	0.98%	474.7	0.98%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.084e-01	0.8098	211.0	22.93%	11185.1	23.04%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.979e-01	0.8098	3.0	0.33%	152.5	0.31%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.842e-01	0.8172	1.0	0.11%	43.5	0.09%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.465e-01	0.8457	10.0	1.09%	543.2	1.12%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.379e-01	0.8501	20.0	2.17%	1087.8	2.24%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-5.337e-01	0.8509	2.0	0.22%	104.2	0.21%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.322e-01	0.8509	112.0	12.17%	6005.3	12.37%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.309e-01	0.8509	148.0	16.09%	7919.4	16.32%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.295e-01	0.8509	7.0	0.76%	383.4	0.79%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.282e-01	0.8509	56.0	6.09%	3023.0	6.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.278e-01	0.8509	1.0	0.11%	47.7	0.10%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.248e-01	0.8509	8.0	0.87%	439.3	0.91%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.248e-01	0.8509	8.0	0.87%	439.3	0.91%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.189e-01	0.8509	33.0	3.59%	1795.4	3.70%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-5.189e-01	0.8509	135.0	14.67%	7239.5	14.92%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.002e-01	0.8509	11.0	1.20%	610.7	1.26%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.911e-01	0.8560	17.0	1.85%	941.5	1.94%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.905e-01	0.8560	6.0	0.65%	336.6	0.69%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.893e-01	0.8560	23.0	2.50%	1268.2	2.61%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.751e-01	0.8613	108.0	11.74%	5839.2	12.03%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.616e-01	0.8701	26.0	2.83%	1443.9	2.97%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.613e-01	0.8701	16.0	1.74%	897.6	1.85%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.606e-01	0.8701	21.0	2.28%	1171.0	2.41%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.449e-01	0.8764	169.0	18.37%	9120.6	18.79%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.430e-01	0.8764	51.0	5.54%	2807.7	5.78%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.411e-01	0.8764	208.0	22.61%	11199.2	23.07%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.346e-01	0.8770	13.0	1.41%	741.7	1.53%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.346e-01	0.8770	94.0	10.22%	5125.9	10.56%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.240e-01	0.8808	82.0	8.91%	4490.2	9.25%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.138e-01	0.8870	19.0	2.07%	1082.0	2.23%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-4.071e-01	0.8902	66.0	7.17%	3642.4	7.50%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.025e-01	0.8915	7.0	0.76%	414.7	0.85%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.805e-01	0.9085	159.0	17.28%	8659.0	17.84%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.708e-01	0.9146	88.0	9.57%	4860.6	10.01%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-3.645e-01	0.9175	44.0	4.78%	2480.2	5.11%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-3.543e-01	0.9240	2.0	0.22%	129.2	0.27%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.493e-01	0.9258	233.0	25.33%	12648.2	26.06%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.481e-01	0.9258	92.0	10.00%	5098.1	10.50%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.425e-01	0.9258	8.0	0.87%	490.5	1.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.425e-01	0.9258	8.0	0.87%	490.5	1.01%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.375e-01	0.9258	95.0	10.33%	5272.0	10.86%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-3.344e-01	0.9258	295.0	32.07%	15968.9	32.90%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.173e-01	0.9386	22.0	2.39%	1296.7	2.67%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.130e-01	0.9399	38.0	4.13%	2188.8	4.51%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.115e-01	0.9399	141.0	15.33%	7780.2	16.03%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.099e-01	0.9399	47.0	5.11%	2686.9	5.54%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.016e-01	0.9422	47.0	5.11%	2693.5	5.55%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.972e-01	0.9435	56.0	6.09%	3191.7	6.58%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.879e-01	0.9495	23.0	2.50%	1370.4	2.82%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.875e-01	0.9495	57.0	6.20%	3255.5	6.71%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.814e-01	0.9500	26.0	2.83%	1543.7	3.18%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.785e-01	0.9501	4.0	0.43%	272.3	0.56%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.746e-01	0.9509	13.0	1.41%	808.3	1.67%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.730e-01	0.9509	161.0	17.50%	8910.6	18.36%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.650e-01	0.9546	69.0	7.50%	3936.1	8.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.606e-01	0.9560	73.0	7.93%	4160.8	8.57%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.552e-01	0.9584	12.0	1.30%	760.8	1.57%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.523e-01	0.9584	7.0	0.76%	465.5	0.96%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.495e-01	0.9584	46.0	5.00%	2685.1	5.53%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.446e-01	0.9602	43.0	4.67%	2523.6	5.20%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.367e-01	0.9652	312.0	33.91%	17049.6	35.13%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.318e-01	0.9671	7.0	0.76%	474.8	0.98%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.282e-01	0.9678	5.0	0.54%	352.3	0.73%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.113e-01	0.9815	50.0	5.43%	2948.5	6.07%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.085e-01	0.9815	46.0	5.00%	2728.7	5.62%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.070e-01	0.9815	278.0	30.22%	15302.8	31.53%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.992e-01	0.9851	94.0	10.22%	5394.0	11.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.870e-01	0.9945	120.0	13.04%	6835.7	14.08%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.799e-01	0.9987	34.0	3.70%	2084.1	4.29%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.776e-01	0.9987	25.0	2.72%	1571.9	3.24%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.759e-01	0.9987	3.0	0.33%	243.0	0.50%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.752e-01	0.9987	5.0	0.54%	376.8	0.78%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.741e-01	0.9987	30.0	3.26%	1862.4	3.84%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.694e-01	0.9987	14.0	1.52%	934.9	1.93%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.642e-01	0.9987	57.0	6.20%	3401.7	7.01%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.636e-01	0.9987	9.0	0.98%	635.4	1.31%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.605e-01	0.9987	11.0	1.20%	760.6	1.57%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.531e-01	1.0000	5.0	0.54%	388.4	0.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.519e-01	1.0000	106.0	11.52%	6137.1	12.64%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.517e-01	1.0000	2.0	0.22%	182.1	0.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.498e-01	1.0000	38.0	4.13%	2349.5	4.84%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.478e-01	1.0000	29.0	3.15%	1835.5	3.78%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.468e-01	1.0000	336.0	36.52%	18552.6	38.22%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.443e-01	1.0000	11.0	1.20%	773.5	1.59%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.347e-01	1.0000	24.0	2.61%	1560.5	3.22%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.181e-01	1.0000	7.0	0.76%	543.9	1.12%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.173e-01	1.0000	14.0	1.52%	983.9	2.03%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.170e-01	1.0000	395.0	42.93%	21787.2	44.89%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.142e-01	1.0000	13.0	1.41%	925.8	1.91%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.103e-01	1.0000	2.0	0.22%	202.1	0.42%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.090e-01	1.0000	6.0	0.65%	485.6	1.00%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.075e-01	1.0000	28.0	3.04%	1833.3	3.78%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.868e-02	1.0000	3.0	0.33%	285.5	0.59%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-9.597e-02	1.0000	46.0	5.00%	2899.3	5.97%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.252e-02	1.0000	5.0	0.54%	432.7	0.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.243e-02	1.0000	100.0	10.87%	5953.1	12.26%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.170e-02	1.0000	63.0	6.85%	3879.4	7.99%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.114e-02	1.0000	16.0	1.74%	1139.9	2.35%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.703e-02	1.0000	3.0	0.33%	294.3	0.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.181e-02	1.0000	179.0	19.46%	10339.4	21.30%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.011e-02	1.0000	51.0	5.54%	3224.3	6.64%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.897e-02	1.0000	51.0	5.54%	3227.8	6.65%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-7.429e-02	1.0000	10.0	1.09%	786.1	1.62%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.729e-02	1.0000	5.0	0.54%	459.1	0.95%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.175e-02	1.0000	65.0	7.07%	4083.8	8.41%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.413e-02	1.0000	26.0	2.83%	1824.7	3.76%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.458e-02	1.0000	28.0	3.04%	1975.7	4.07%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-4.421e-02	1.0000	82.0	8.91%	5129.9	10.57%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.020e-02	1.0000	45.0	4.89%	3009.9	6.20%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.893e-02	1.0000	7.0	0.76%	648.2	1.34%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.674e-02	1.0000	76.0	8.26%	4828.1	9.95%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.498e-02	1.0000	56.0	6.09%	3681.7	7.59%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.171e-02	1.0000	28.0	3.04%	2026.8	4.18%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.126e-02	1.0000	17.0	1.85%	1338.5	2.76%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.757e-02	1.0000	2.0	0.22%	288.2	0.59%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-2.719e-02	1.0000	40.0	4.35%	2779.6	5.73%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.476e-02	1.0000	17.0	1.85%	1366.6	2.82%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.362e-02	1.0000	13.0	1.41%	1108.3	2.28%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.105e-02	1.0000	5.0	0.54%	553.3	1.14%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-2.098e-02	1.0000	105.0	11.41%	6611.8	13.62%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.068e-02	1.0000	45.0	4.89%	3126.0	6.44%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.020e-02	1.0000	2.0	0.22%	307.4	0.63%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.220e-02	1.0000	9.0	0.98%	896.9	1.85%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.449e-03	1.0000	3.0	0.33%	446.4	0.92%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.032e-03	1.0000	111.0	12.07%	7226.9	14.89%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.379e-03	1.0000	144.0	15.65%	9135.7	18.82%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.834e-03	1.0000	72.0	7.83%	5028.2	10.36%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.696e-03	1.0000	10.0	1.09%	1103.1	2.27%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-5.460e-04	1.0000	230.0	25.00%	14461.3	29.79%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-4.880e-04	1.0000	164.0	17.83%	10767.2	22.18%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-4.300e-05	1.0000	79.0	8.59%	6127.9	12.63%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	12.6	0.03%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	180.9	0.37%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	24.0	0.05%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	91.4	0.19%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	51.9	0.11%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	29.7	0.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.6	0.01%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	19.5	0.04%