Information for 1-GCCCTCTAGTGG (Motif 1)

A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G
Reverse Opposite:
T A G C A T G C T C G A A T G C G A C T T G C A A T C G C T G A A C T G C T A G A T C G G T A C
p-value:1e-23
log p-value:-5.523e+01
Information Content per bp:1.750
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif6.09%
Number of Background Sequences with motif219.2
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets109.1 +/- 41.2bp
Average Position of motif in Background98.6 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----GCCCTCTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----GCCCTCTAGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.84
Offset:-7
Orientation:forward strand
Alignment:-------GCCCTCTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCFL/MA1102.1/Jaspar

Match Rank:4
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTCTAGTGG
NGTGCCCCCTGGNG-
 A C G T A C G T A C G T A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTCTAGTGG
NTGCCCANNGGTNA
 A C G T A C G T A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCCCTCTAGTGG
---NTCAAGTGG
 A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCCTCTAGTGG-
---BTBRAGTGSN
 A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCCCTCTAGTGG-
---NTCAAGTGGN
 A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G A C G T
A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GCCCTCTAGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCCTCTAGTGG-
---CTYRAGTGSY
 A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C