Information for 17-AATGAAAGAC (Motif 25)

G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
Reverse Opposite:
A T C G A G C T G T A C G C A T A G C T A G C T A G T C G T C A A G C T C A G T
p-value:1e-8
log p-value:-1.925e+01
Information Content per bp:1.822
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif5.70%
Number of Background Sequences with motif754.1
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets103.7 +/- 60.2bp
Average Position of motif in Background98.9 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGAC
GGYAATGAAA---
 A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGAC
GGCMATGAAA---
 A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AATGAAAGAC
HDGYAATGAAAN--
 A C G T A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T A C G T

ZNF24/MA1124.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AATGAAAGAC--
GAATGAATGAATG
 A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C A C G T A C G T
C T A G T C G A C T G A A G C T C T A G C T G A T C G A A G C T C T A G T C G A C T G A A G C T C T A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AATGAAAGAC
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AATGAAAGAC
GAAAGTGAAAGT-
 A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGAC
NCYAATAAAA---
 A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AATGAAAGAC-
AGGTGHCAGACA
 A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGAC
RGCAATNAAA---
 A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T A C G T A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AATGAAAGAC
TTCAAAWTAAAAGTC
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C