Information for 1-CCTGCCAA (Motif 3)

A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A T C G A G T C C G T A C T A G A T C G
p-value:1e-16
log p-value:-3.894e+01
Information Content per bp:1.840
Number of Target Sequences with motif140.0
Percentage of Target Sequences with motif27.50%
Number of Background Sequences with motif6390.2
Percentage of Background Sequences with motif13.22%
Average Position of motif in Targets102.3 +/- 52.4bp
Average Position of motif in Background99.8 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAA
CTTGGCAA
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:2
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCCAA
VGCTGGCA-
 A C G T A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCTGCCAA-
CGTGCCAAG
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CCTGCCAA--
GGTGCCAAGT
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAA
GCTGTCAA
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CCTGCCAA-
VGCTGWCAVB
 A C G T A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAA---
NNTGCCAAGNN
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAA
CCTGTCAA
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAA
RHTGWCAR
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CCTGCCAA--
--TGTCANYT
 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A A C G T A C G T
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T