Information for 1-GCCMCCTRGTGG (Motif 1)

A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A T G C A G C T C G T A A C T G C T A G C A T G A C T G A C T G A G T C
p-value:1e-37
log p-value:-8.575e+01
Information Content per bp:1.864
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif4.45%
Number of Background Sequences with motif183.8
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets99.3 +/- 46.2bp
Average Position of motif in Background89.6 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-7
Orientation:forward strand
Alignment:-------GCCMCCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----GCCMCCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----GCCMCCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCFL/MA1102.1/Jaspar

Match Rank:4
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---GCCMCCTRGTGG
NGTGCCCCCTGGNG-
 A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCCMCCTRGTGG--
GGCCYCCTGCTGDGH
 A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCMCCTRGTGG-
-CCCCCTGCTGTG
 A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCMCCTRGTGG-
NGGCCTCCCAGGGAG
 A C G T A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T
G C T A A C T G T C A G G A T C A G T C G A C T A G T C G T A C G A T C C T G A T A C G C T A G T C A G C G T A A T C G

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCMCCTRGTGG--
GACCCCCCGCTGTGC
 A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GCCMCCTRGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCMCCTRGTGG
GCCATCTGTT--
 A C T G A G T C A G T C G T A C A G T C A G T C A C G T C T G A A T C G C G A T A C T G A C T G
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T