Information for 10-RTGATKTTATGA (Motif 12)

C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A C G T A G T C A G T C A A C G T A G T C C G T A A G T C
p-value:1e-12
log p-value:-2.881e+01
Information Content per bp:1.915
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets98.0 +/- 51.6bp
Average Position of motif in Background43.2 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:RTGATKTTATGA-
---NTTTTACGAC
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:RTGATKTTATGA-----
-NAATTTTACGAGNTNN
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:RTGATKTTATGA---
GTNTTGTTGTGANNT
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:RTGATKTTATGA-
---NTTTTATGAC
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

JUN/MA0488.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RTGATKTTATGA
AAGATGATGTCAT--
 A C G T A C G T A C G T C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T A C G T

PH0014.1_Cphx/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-RTGATKTTATGA-
NTTGATTNNATCAN
 A C G T C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T
C G A T A G C T C G A T C T A G C G T A A C G T A C G T A T G C T A C G G T C A A C G T A G T C C G T A G A C T

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RTGATKTTATGA-----
NNNATTTTACGACNNTN
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:RTGATKTTATGA-
---NTTTTACGAC
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RTGATKTTATGA-----
ANNATTTTACGACNTNA
 C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

JUND(var.2)/MA0492.1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----RTGATKTTATGA
AAAGATGATGTCATC-
 A C G T A C G T A C G T A C G T C T A G A C G T A C T G C G T A A C G T A C G T A C G T A C G T G T C A A C G T A C T G C G T A
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C A C G T