Information for 13-AGCACCAGAGAC (Motif 15)

C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T G T A C A C G T A C T G A C T G A C G T A T C G A G T C A C G T
p-value:1e-10
log p-value:-2.332e+01
Information Content per bp:1.951
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets83.4 +/- 45.5bp
Average Position of motif in Background143.0 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCAGAGAC------
TCAGCACCATGGACAGCTCC
 A C G T A C G T C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGCACCAGAGAC------
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGCACCAGAGAC--
--RHHCAGAGAGGB
 C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCACCAGAGAC
NWAACCACADNN
 C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCACCAGAGAC
-AAACCACAGAN
 C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCACCAGAGAC
-AAACCACAGC-
 C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:-8
Orientation:reverse strand
Alignment:--------AGCACCAGAGAC
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGCACCAGAGAC----
CAAATCCAGACATCACA
 A C G T C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AGCACCAGAGAC--
----CCAGACRSVB
 C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGCACCAGAGAC
----CCAGACAG
 C G T A A C T G A T G C C G T A A G T C A G T C C G T A A C T G C G T A A C T G C G T A A G T C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G