Information for 6-AGGGTTTTGAAA (Motif 9)

C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A
Reverse Opposite:
C G A T C A G T A G C T G A T C G T C A C T G A T C G A C T G A T A G C G A T C G A T C G C A T
p-value:1e-15
log p-value:-3.619e+01
Information Content per bp:1.672
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif7.47%
Number of Background Sequences with motif1339.2
Percentage of Background Sequences with motif2.78%
Average Position of motif in Targets104.6 +/- 58.9bp
Average Position of motif in Background96.8 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:AGGGTTTTGAAA---
-----TTTGAAACCG
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AGGGTTTTGAAA-
----ATTTGAATT
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CEBPA/MA0102.3/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGGGTTTTGAAA-
--NATTGTGCAAT
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T
A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGGGTTTTGAAA-
---RTTATGYAAB
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T
A C G T A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGGGTTTTGAAA
--GGYAATGAAA
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A
A C G T A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGGTTTTGAAA-
---CCTTTGATGT
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGGGTTTTGAAA
--GGCMATGAAA
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A
A C G T A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AGGGTTTTGAAA---
-----ACTGAAACCA
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGGGTTTTGAAA--
--GNCTATAAAAGG
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T A C G T
A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGGGTTTTGAAA-
---CYHATAAAAN
 C G T A C T A G C T A G A T C G G A C T A G C T G A C T C A G T C T A G T C G A G T C A C G T A A C G T
A C G T A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C