Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1191)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48168)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-47	-1.095e+02	0.0000	103.0	8.65%	659.9	1.37%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-29	-6.733e+01	0.0000	145.0	12.17%	2004.5	4.16%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-28	-6.630e+01	0.0000	105.0	8.82%	1147.1	2.38%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-21	-4.995e+01	0.0000	121.0	10.16%	1801.9	3.74%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-20	-4.676e+01	0.0000	366.0	30.73%	9319.2	19.35%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-20	-4.663e+01	0.0000	94.0	7.89%	1238.5	2.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-19	-4.541e+01	0.0000	126.0	10.58%	2034.6	4.22%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-19	-4.506e+01	0.0000	143.0	12.01%	2486.5	5.16%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-19	-4.458e+01	0.0000	125.0	10.50%	2030.3	4.21%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-19	-4.457e+01	0.0000	158.0	13.27%	2907.7	6.04%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-17	-4.115e+01	0.0000	73.0	6.13%	877.6	1.82%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-17	-4.027e+01	0.0000	139.0	11.67%	2521.3	5.23%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-14	-3.339e+01	0.0000	76.0	6.38%	1091.8	2.27%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-14	-3.338e+01	0.0000	224.0	18.81%	5337.4	11.08%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-14	-3.294e+01	0.0000	58.0	4.87%	697.2	1.45%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-14	-3.243e+01	0.0000	293.0	24.60%	7668.9	15.92%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-13	-3.140e+01	0.0000	176.0	14.78%	3928.6	8.16%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-13	-2.998e+01	0.0000	77.0	6.47%	1193.0	2.48%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-12	-2.920e+01	0.0000	97.0	8.14%	1728.7	3.59%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-12	-2.845e+01	0.0000	138.0	11.59%	2911.2	6.04%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-12	-2.828e+01	0.0000	120.0	10.08%	2395.2	4.97%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-12	-2.817e+01	0.0000	302.0	25.36%	8254.8	17.14%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-12	-2.768e+01	0.0000	233.0	19.56%	5944.8	12.34%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-11	-2.721e+01	0.0000	262.0	22.00%	6946.5	14.42%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-10	-2.513e+01	0.0000	341.0	28.63%	9854.0	20.46%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-9	-2.297e+01	0.0000	116.0	9.74%	2489.9	5.17%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-9	-2.250e+01	0.0000	208.0	17.46%	5433.5	11.28%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.155e+01	0.0000	51.0	4.28%	761.1	1.58%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-9	-2.079e+01	0.0000	161.0	13.52%	3995.1	8.29%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-2.037e+01	0.0000	156.0	13.10%	3858.1	8.01%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-8	-1.977e+01	0.0000	283.0	23.76%	8222.6	17.07%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-8	-1.964e+01	0.0000	173.0	14.53%	4455.3	9.25%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-8	-1.944e+01	0.0000	109.0	9.15%	2436.4	5.06%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.923e+01	0.0000	169.0	14.19%	4349.6	9.03%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-7	-1.839e+01	0.0000	94.0	7.89%	2034.1	4.22%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-7	-1.801e+01	0.0000	42.0	3.53%	627.4	1.30%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-7	-1.754e+01	0.0000	206.0	17.30%	5710.1	11.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.750e+01	0.0000	167.0	14.02%	4395.6	9.12%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.682e+01	0.0000	212.0	17.80%	5973.3	12.40%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-6	-1.544e+01	0.0000	170.0	14.27%	4640.9	9.63%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-6	-1.542e+01	0.0000	26.0	2.18%	316.9	0.66%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-6	-1.498e+01	0.0000	187.0	15.70%	5256.6	10.91%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-6	-1.456e+01	0.0000	201.0	16.88%	5776.4	11.99%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-5	-1.283e+01	0.0000	30.0	2.52%	459.2	0.95%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-5	-1.267e+01	0.0000	280.0	23.51%	8792.0	18.25%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-5	-1.262e+01	0.0000	46.0	3.86%	882.8	1.83%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-5	-1.220e+01	0.0000	26.0	2.18%	378.3	0.79%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-4	-1.131e+01	0.0001	267.0	22.42%	8468.7	17.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-4	-1.120e+01	0.0001	237.0	19.90%	7383.4	15.33%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-4	-1.116e+01	0.0001	101.0	8.48%	2641.5	5.48%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-4	-1.101e+01	0.0001	24.0	2.02%	357.1	0.74%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-1.080e+01	0.0002	36.0	3.02%	670.9	1.39%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-4	-9.865e+00	0.0004	460.0	38.62%	16004.2	33.22%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-4	-9.803e+00	0.0004	312.0	26.20%	10333.8	21.45%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-4	-9.662e+00	0.0005	48.0	4.03%	1056.7	2.19%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-4	-9.571e+00	0.0005	103.0	8.65%	2822.0	5.86%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-9.220e+00	0.0007	184.0	15.45%	5683.5	11.80%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-8.991e+00	0.0009	306.0	25.69%	10220.2	21.22%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-3	-8.943e+00	0.0009	31.0	2.60%	596.9	1.24%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-8.821e+00	0.0011	45.0	3.78%	1005.5	2.09%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-8.781e+00	0.0011	117.0	9.82%	3362.2	6.98%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-8.313e+00	0.0017	38.0	3.19%	820.6	1.70%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-8.253e+00	0.0018	68.0	5.71%	1757.2	3.65%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-8.177e+00	0.0019	76.0	6.38%	2024.0	4.20%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-7.709e+00	0.0030	59.0	4.95%	1501.8	3.12%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-7.174e+00	0.0050	418.0	35.10%	14823.4	30.77%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-3	-7.027e+00	0.0057	311.0	26.11%	10713.2	22.24%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-7.003e+00	0.0057	97.0	8.14%	2830.9	5.88%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-6.935e+00	0.0060	661.0	55.50%	24555.2	50.97%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.786e+00	0.0069	82.0	6.88%	2333.0	4.84%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-6.382e+00	0.0102	155.0	13.01%	4966.1	10.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.294e+00	0.0110	434.0	36.44%	15620.5	32.43%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-2	-6.085e+00	0.0134	410.0	34.42%	14721.6	30.56%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-2	-5.955e+00	0.0150	190.0	15.95%	6315.0	13.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.854e+00	0.0164	45.0	3.78%	1167.8	2.42%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-5.410e+00	0.0252	239.0	20.07%	8247.5	17.12%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.371e+00	0.0259	207.0	17.38%	7043.6	14.62%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-5.319e+00	0.0269	46.0	3.86%	1236.5	2.57%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-5.293e+00	0.0272	76.0	6.38%	2261.1	4.69%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-5.023e+00	0.0352	7.0	0.59%	87.8	0.18%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-2	-5.001e+00	0.0356	200.0	16.79%	6841.8	14.20%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-2	-4.989e+00	0.0356	171.0	14.36%	5754.2	11.95%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-2	-4.958e+00	0.0363	97.0	8.14%	3041.0	6.31%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-4.900e+00	0.0379	216.0	18.14%	7464.3	15.50%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-4.771e+00	0.0427	34.0	2.85%	880.4	1.83%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-4.731e+00	0.0439	405.0	34.01%	14820.9	30.77%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-2	-4.653e+00	0.0469	214.0	17.97%	7433.9	15.43%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-4.630e+00	0.0474	128.0	10.75%	4212.8	8.75%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-4.517e+00	0.0525	123.0	10.33%	4044.1	8.40%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.473e+00	0.0543	60.0	5.04%	1782.8	3.70%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.460e+00	0.0544	28.0	2.35%	706.4	1.47%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.439e+00	0.0550	125.0	10.50%	4129.6	8.57%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.433e+00	0.0550	24.0	2.02%	581.6	1.21%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-4.355e+00	0.0585	84.0	7.05%	2645.5	5.49%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.296e+00	0.0613	86.0	7.22%	2724.6	5.66%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-1	-4.199e+00	0.0669	306.0	25.69%	11069.4	22.98%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-4.149e+00	0.0696	61.0	5.12%	1849.7	3.84%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.073e+00	0.0744	50.0	4.20%	1472.2	3.06%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.996e+00	0.0795	194.0	16.29%	6796.5	14.11%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.990e+00	0.0795	109.0	9.15%	3604.8	7.48%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1	-3.945e+00	0.0820	320.0	26.87%	11675.7	24.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.935e+00	0.0820	24.0	2.02%	609.6	1.27%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.916e+00	0.0820	10.0	0.84%	187.4	0.39%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.916e+00	0.0820	10.0	0.84%	187.0	0.39%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.644e+00	0.1065	12.0	1.01%	253.6	0.53%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.599e+00	0.1104	238.0	19.98%	8569.8	17.79%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.596e+00	0.1104	237.0	19.90%	8531.1	17.71%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.589e+00	0.1104	25.0	2.10%	664.0	1.38%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.587e+00	0.1104	102.0	8.56%	3405.2	7.07%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.569e+00	0.1104	29.0	2.43%	797.3	1.66%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.530e+00	0.1130	128.0	10.75%	4384.7	9.10%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.514e+00	0.1138	41.0	3.44%	1211.7	2.52%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-3.480e+00	0.1167	95.0	7.98%	3162.9	6.57%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.311e+00	0.1370	219.0	18.39%	7901.1	16.40%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.218e+00	0.1490	10.0	0.84%	211.1	0.44%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.216e+00	0.1490	64.0	5.37%	2062.4	4.28%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.203e+00	0.1490	111.0	9.32%	3802.4	7.89%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.180e+00	0.1509	31.0	2.60%	895.3	1.86%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.175e+00	0.1509	66.0	5.54%	2140.5	4.44%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.078e+00	0.1642	21.0	1.76%	565.7	1.17%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.059e+00	0.1660	47.0	3.95%	1468.1	3.05%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-1	-3.056e+00	0.1660	169.0	14.19%	6033.7	12.53%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-3.025e+00	0.1689	68.0	5.71%	2233.3	4.64%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.005e+00	0.1710	47.0	3.95%	1474.2	3.06%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-2.985e+00	0.1731	49.0	4.11%	1548.1	3.21%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.964e+00	0.1753	95.0	7.98%	3243.1	6.73%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-2.946e+00	0.1772	40.0	3.36%	1231.1	2.56%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-2.878e+00	0.1880	92.0	7.72%	3145.5	6.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.850e+00	0.1919	540.0	45.34%	20732.3	43.04%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.848e+00	0.1919	15.0	1.26%	383.8	0.80%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.702e+00	0.2190	82.0	6.88%	2800.3	5.81%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.689e+00	0.2204	19.0	1.60%	525.8	1.09%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.667e+00	0.2236	73.0	6.13%	2470.6	5.13%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.663e+00	0.2236	5.0	0.42%	88.0	0.18%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.631e+00	0.2284	94.0	7.89%	3263.3	6.77%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.627e+00	0.2284	63.0	5.29%	2105.4	4.37%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.615e+00	0.2285	55.0	4.62%	1812.6	3.76%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.601e+00	0.2301	86.0	7.22%	2967.5	6.16%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.580e+00	0.2334	155.0	13.01%	5602.7	11.63%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.536e+00	0.2420	95.0	7.98%	3318.3	6.89%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.492e+00	0.2511	229.0	19.23%	8500.2	17.65%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-2.425e+00	0.2667	285.0	23.93%	10720.5	22.25%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-1	-2.347e+00	0.2862	96.0	8.06%	3392.9	7.04%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.345e+00	0.2862	53.0	4.45%	1776.8	3.69%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.320e+00	0.2902	140.0	11.75%	5085.8	10.56%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.315e+00	0.2902	37.0	3.11%	1193.7	2.48%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.297e+00	0.2929	232.0	19.48%	8675.1	18.01%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.291e+00	0.2929	15.0	1.26%	418.2	0.87%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-2.270e+00	0.2968	276.0	23.17%	10415.9	21.62%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.264e+00	0.2968	214.0	17.97%	7979.3	16.56%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.254e+00	0.2977	68.0	5.71%	2350.2	4.88%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-2.240e+00	0.2996	329.0	27.62%	12522.9	26.00%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.152e+00	0.3253	210.0	17.63%	7856.1	16.31%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.147e+00	0.3253	45.0	3.78%	1508.9	3.13%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.141e+00	0.3253	3.0	0.25%	48.5	0.10%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.076e+00	0.3442	68.0	5.71%	2381.1	4.94%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.064e+00	0.3462	111.0	9.32%	4027.6	8.36%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.054e+00	0.3474	42.0	3.53%	1410.4	2.93%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.048e+00	0.3474	80.0	6.72%	2842.4	5.90%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.009e+00	0.3589	300.0	25.19%	11455.1	23.78%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-2.000e+00	0.3598	10.0	0.84%	270.0	0.56%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.995e+00	0.3598	27.0	2.27%	868.0	1.80%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.973e+00	0.3653	72.0	6.05%	2552.8	5.30%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.971e+00	0.3653	33.0	2.77%	1089.1	2.26%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.950e+00	0.3692	188.0	15.79%	7055.4	14.65%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.939e+00	0.3709	107.0	8.98%	3902.3	8.10%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.906e+00	0.3812	107.0	8.98%	3910.2	8.12%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.881e+00	0.3883	15.0	1.26%	449.6	0.93%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.866e+00	0.3919	20.0	1.68%	628.9	1.31%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.860e+00	0.3919	65.0	5.46%	2307.7	4.79%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.856e+00	0.3919	10.0	0.84%	278.8	0.58%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.843e+00	0.3942	151.0	12.68%	5639.0	11.71%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.816e+00	0.4026	141.0	11.84%	5255.7	10.91%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.794e+00	0.4092	30.0	2.52%	1001.7	2.08%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.793e+00	0.4092	176.0	14.78%	6633.6	13.77%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.770e+00	0.4144	2.0	0.17%	30.9	0.06%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.735e+00	0.4267	177.0	14.86%	6691.5	13.89%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.715e+00	0.4327	16.0	1.34%	499.3	1.04%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.710e+00	0.4327	246.0	20.65%	9425.6	19.57%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.682e+00	0.4425	121.0	10.16%	4512.1	9.37%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.671e+00	0.4446	2.0	0.17%	32.9	0.07%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.660e+00	0.4470	66.0	5.54%	2385.5	4.95%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.660e+00	0.4470	118.0	9.91%	4401.9	9.14%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.644e+00	0.4495	147.0	12.34%	5541.8	11.50%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.635e+00	0.4510	63.0	5.29%	2275.3	4.72%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.629e+00	0.4513	40.0	3.36%	1399.8	2.91%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.588e+00	0.4677	15.0	1.26%	475.0	0.99%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.583e+00	0.4677	10.0	0.84%	297.1	0.62%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.555e+00	0.4784	13.0	1.09%	406.1	0.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.548e+00	0.4790	19.0	1.60%	625.7	1.30%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.547e+00	0.4790	29.0	2.43%	997.8	2.07%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.525e+00	0.4849	61.0	5.12%	2221.8	4.61%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.524e+00	0.4849	138.0	11.59%	5225.4	10.85%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.516e+00	0.4849	15.0	1.26%	482.6	1.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.516e+00	0.4849	15.0	1.26%	482.6	1.00%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.515e+00	0.4849	36.0	3.02%	1266.5	2.63%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.476e+00	0.4967	27.0	2.27%	932.4	1.94%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.444e+00	0.5100	93.0	7.81%	3484.8	7.23%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.443e+00	0.5100	12.0	1.01%	380.5	0.79%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.430e+00	0.5124	34.0	2.85%	1205.0	2.50%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.428e+00	0.5124	144.0	12.09%	5493.6	11.40%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.419e+00	0.5124	58.0	4.87%	2128.6	4.42%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.409e+00	0.5151	3.0	0.25%	70.0	0.15%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.368e+00	0.5343	25.0	2.10%	872.8	1.81%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.365e+00	0.5343	528.0	44.33%	20881.7	43.35%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.363e+00	0.5343	82.0	6.88%	3076.4	6.39%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.362e+00	0.5343	128.0	10.75%	4884.2	10.14%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.359e+00	0.5343	27.0	2.27%	949.7	1.97%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.358e+00	0.5343	18.0	1.51%	610.0	1.27%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.340e+00	0.5343	28.0	2.35%	990.0	2.06%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.328e+00	0.5377	16.0	1.34%	539.0	1.12%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.318e+00	0.5402	6.0	0.50%	175.5	0.36%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.285e+00	0.5558	9.0	0.76%	285.2	0.59%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.281e+00	0.5558	51.0	4.28%	1887.2	3.92%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.280e+00	0.5558	25.0	2.10%	885.4	1.84%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.272e+00	0.5558	206.0	17.30%	8012.2	16.63%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-1.255e+00	0.5624	158.0	13.27%	6110.3	12.68%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.244e+00	0.5662	146.0	12.26%	5638.7	11.71%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.236e+00	0.5677	10.0	0.84%	326.6	0.68%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.236e+00	0.5677	11.0	0.92%	363.8	0.76%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.216e+00	0.5743	7.0	0.59%	218.9	0.45%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.180e+00	0.5927	289.0	24.27%	11373.7	23.61%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.164e+00	0.5992	22.0	1.85%	788.7	1.64%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.156e+00	0.6012	65.0	5.46%	2465.8	5.12%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.141e+00	0.6080	14.0	1.18%	486.5	1.01%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.132e+00	0.6107	6.0	0.50%	188.8	0.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.118e+00	0.6165	25.0	2.10%	911.7	1.89%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.116e+00	0.6165	49.0	4.11%	1847.4	3.84%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.115e+00	0.6165	42.0	3.53%	1573.5	3.27%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.108e+00	0.6165	114.0	9.57%	4418.1	9.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.106e+00	0.6165	225.0	18.89%	8847.3	18.37%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.096e+00	0.6169	208.0	17.46%	8172.4	16.97%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.093e+00	0.6169	62.0	5.21%	2364.5	4.91%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.077e+00	0.6228	80.0	6.72%	3080.8	6.40%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.074e+00	0.6228	54.0	4.53%	2054.5	4.27%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.072e+00	0.6228	252.0	21.16%	9947.0	20.65%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.057e+00	0.6277	11.0	0.92%	383.0	0.79%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.026e+00	0.6445	18.0	1.51%	655.6	1.36%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.025e+00	0.6445	45.0	3.78%	1712.2	3.55%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.024e+00	0.6445	31.0	2.60%	1162.9	2.41%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.017e+00	0.6445	28.0	2.35%	1046.9	2.17%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.016e+00	0.6445	83.0	6.97%	3219.9	6.68%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.808e-01	0.6605	8.0	0.67%	276.6	0.57%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-9.734e-01	0.6627	276.0	23.17%	10964.1	22.76%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.664e-01	0.6646	105.0	8.82%	4113.6	8.54%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.633e-01	0.6646	46.0	3.86%	1767.5	3.67%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-9.384e-01	0.6780	191.0	16.04%	7569.3	15.71%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.272e-01	0.6829	32.0	2.69%	1222.6	2.54%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.109e-01	0.6913	107.0	8.98%	4215.5	8.75%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.944e-01	0.6999	13.0	1.09%	480.1	1.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-8.728e-01	0.7124	6.0	0.50%	210.8	0.44%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-8.691e-01	0.7124	9.0	0.76%	327.9	0.68%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.441e-01	0.7273	3.0	0.25%	97.2	0.20%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.270e-01	0.7370	61.0	5.12%	2405.3	4.99%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.970e-01	0.7564	25.0	2.10%	973.7	2.02%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.896e-01	0.7591	79.0	6.63%	3141.9	6.52%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.630e-01	0.7765	35.0	2.94%	1382.4	2.87%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.525e-01	0.7817	4.0	0.34%	143.8	0.30%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.286e-01	0.7974	71.0	5.96%	2843.5	5.90%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.178e-01	0.8030	110.0	9.24%	4422.7	9.18%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.105e-01	0.8058	44.0	3.69%	1760.6	3.65%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.063e-01	0.8062	19.0	1.60%	753.0	1.56%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.026e-01	0.8062	55.0	4.62%	2207.0	4.58%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-6.959e-01	0.8084	61.0	5.12%	2452.7	5.09%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.918e-01	0.8087	21.0	1.76%	836.0	1.74%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.805e-01	0.8148	12.0	1.01%	475.0	0.99%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.598e-01	0.8286	32.0	2.69%	1290.5	2.68%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.450e-01	0.8379	237.0	19.90%	9604.6	19.94%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.249e-01	0.8517	13.0	1.09%	525.3	1.09%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.223e-01	0.8517	128.0	10.75%	5202.4	10.80%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.123e-01	0.8561	66.0	5.54%	2689.0	5.58%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.110e-01	0.8561	99.0	8.31%	4031.9	8.37%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.073e-01	0.8561	9.0	0.76%	364.5	0.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.057e-01	0.8561	59.0	4.95%	2407.7	5.00%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.973e-01	0.8565	44.0	3.69%	1799.3	3.74%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.904e-01	0.8592	52.0	4.37%	2128.3	4.42%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.869e-01	0.8592	43.0	3.61%	1762.0	3.66%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-5.865e-01	0.8592	280.0	23.51%	11392.3	23.65%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.846e-01	0.8592	42.0	3.53%	1722.3	3.58%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-5.840e-01	0.8592	60.0	5.04%	2457.3	5.10%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.756e-01	0.8592	30.0	2.52%	1234.5	2.56%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.722e-01	0.8592	113.0	9.49%	4622.6	9.60%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.696e-01	0.8592	20.0	1.68%	825.8	1.71%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.689e-01	0.8592	8.0	0.67%	329.4	0.68%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-5.647e-01	0.8592	15.0	1.26%	620.4	1.29%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.626e-01	0.8592	63.0	5.29%	2589.6	5.38%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-5.574e-01	0.8592	4.0	0.34%	163.2	0.34%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.573e-01	0.8592	19.0	1.60%	787.2	1.63%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-5.484e-01	0.8592	32.0	2.69%	1325.5	2.75%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.403e-01	0.8598	105.0	8.82%	4315.4	8.96%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.339e-01	0.8624	174.0	14.61%	7131.0	14.80%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.254e-01	0.8668	84.0	7.05%	3466.5	7.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.231e-01	0.8668	26.0	2.18%	1086.8	2.26%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.189e-01	0.8668	511.0	42.91%	20815.1	43.21%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.133e-01	0.8684	278.0	23.34%	11375.2	23.61%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.983e-01	0.8785	103.0	8.65%	4259.9	8.84%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.966e-01	0.8785	34.0	2.85%	1426.7	2.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.954e-01	0.8785	1.0	0.08%	38.8	0.08%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-4.954e-01	0.8785	1.0	0.08%	38.3	0.08%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.836e-01	0.8796	26.0	2.18%	1099.1	2.28%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.799e-01	0.8799	38.0	3.19%	1599.0	3.32%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.677e-01	0.8878	19.0	1.60%	813.0	1.69%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-4.668e-01	0.8878	89.0	7.47%	3705.3	7.69%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.649e-01	0.8878	1.0	0.08%	40.2	0.08%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.612e-01	0.8878	74.0	6.21%	3092.4	6.42%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-4.547e-01	0.8878	65.0	5.46%	2725.3	5.66%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.538e-01	0.8878	9.0	0.76%	393.5	0.82%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.538e-01	0.8878	9.0	0.76%	393.5	0.82%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.533e-01	0.8878	6.0	0.50%	264.3	0.55%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.507e-01	0.8878	142.0	11.92%	5888.8	12.22%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-4.431e-01	0.8878	362.0	30.39%	14858.8	30.85%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.347e-01	0.8882	93.0	7.81%	3890.9	8.08%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.326e-01	0.8882	27.0	2.27%	1159.2	2.41%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.305e-01	0.8882	8.0	0.67%	356.0	0.74%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-4.242e-01	0.8890	108.0	9.07%	4514.2	9.37%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.103e-01	0.8986	6.0	0.50%	272.4	0.57%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.036e-01	0.9018	241.0	20.24%	9976.2	20.71%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.029e-01	0.9018	11.0	0.92%	491.7	1.02%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.015e-01	0.9018	2.0	0.17%	93.2	0.19%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.012e-01	0.9018	68.0	5.71%	2880.1	5.98%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.959e-01	0.9018	17.0	1.43%	750.8	1.56%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.931e-01	0.9018	2.0	0.17%	94.0	0.20%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.908e-01	0.9018	7.0	0.59%	320.1	0.66%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.689e-01	0.9135	274.0	23.01%	11361.2	23.59%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-3.618e-01	0.9171	188.0	15.79%	7852.2	16.30%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-3.588e-01	0.9171	198.0	16.62%	8265.4	17.16%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.474e-01	0.9247	108.0	9.07%	4574.4	9.50%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-3.412e-01	0.9276	110.0	9.24%	4663.0	9.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.411e-01	0.9276	29.0	2.43%	1282.4	2.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.101e-01	0.9511	54.0	4.53%	2355.0	4.89%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.999e-01	0.9580	122.0	10.24%	5197.1	10.79%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.958e-01	0.9591	67.0	5.63%	2911.7	6.04%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.867e-01	0.9650	99.0	8.31%	4256.0	8.84%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.860e-01	0.9650	108.0	9.07%	4630.4	9.61%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.809e-01	0.9650	22.0	1.85%	1011.2	2.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.807e-01	0.9650	2.0	0.17%	110.5	0.23%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.755e-01	0.9650	116.0	9.74%	4973.2	10.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.683e-01	0.9683	37.0	3.11%	1663.6	3.45%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.583e-01	0.9751	70.0	5.88%	3068.5	6.37%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.433e-01	0.9870	3.0	0.25%	168.1	0.35%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.376e-01	0.9897	79.0	6.63%	3466.9	7.20%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.278e-01	0.9965	18.0	1.51%	863.9	1.79%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.247e-01	0.9967	48.0	4.03%	2165.1	4.49%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.188e-01	0.9997	13.0	1.09%	644.2	1.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.160e-01	0.9997	380.0	31.91%	15916.8	33.04%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.141e-01	0.9997	366.0	30.73%	15348.5	31.86%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.137e-01	0.9997	8.0	0.67%	417.2	0.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.080e-01	0.9997	164.0	13.77%	7051.4	14.64%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.926e-01	1.0000	77.0	6.47%	3430.7	7.12%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.864e-01	1.0000	166.0	13.94%	7168.9	14.88%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.861e-01	1.0000	84.0	7.05%	3734.6	7.75%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.822e-01	1.0000	62.0	5.21%	2804.7	5.82%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.811e-01	1.0000	8.0	0.67%	431.1	0.89%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.797e-01	1.0000	74.0	6.21%	3318.5	6.89%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.703e-01	1.0000	83.0	6.97%	3712.7	7.71%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.694e-01	1.0000	117.0	9.82%	5148.5	10.69%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.688e-01	1.0000	33.0	2.77%	1565.9	3.25%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.670e-01	1.0000	78.0	6.55%	3504.8	7.28%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.665e-01	1.0000	8.0	0.67%	438.3	0.91%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.649e-01	1.0000	4.0	0.34%	242.8	0.50%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.620e-01	1.0000	3.0	0.25%	191.2	0.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.611e-01	1.0000	33.0	2.77%	1572.8	3.27%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.603e-01	1.0000	22.0	1.85%	1085.6	2.25%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.527e-01	1.0000	1.0	0.08%	79.0	0.16%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.466e-01	1.0000	50.0	4.20%	2329.4	4.84%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.430e-01	1.0000	3.0	0.25%	198.3	0.41%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.420e-01	1.0000	184.0	15.45%	8000.2	16.61%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.318e-01	1.0000	4.0	0.34%	256.8	0.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.253e-01	1.0000	73.0	6.13%	3351.8	6.96%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.218e-01	1.0000	151.0	12.68%	6664.9	13.84%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.202e-01	1.0000	105.0	8.82%	4726.5	9.81%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.196e-01	1.0000	8.0	0.67%	465.5	0.97%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.177e-01	1.0000	4.0	0.34%	263.7	0.55%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.135e-01	1.0000	501.0	42.07%	21102.3	43.81%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.099e-01	1.0000	174.0	14.61%	7657.1	15.90%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.009e-01	1.0000	52.0	4.37%	2482.0	5.15%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.978e-02	1.0000	45.0	3.78%	2175.3	4.52%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-9.656e-02	1.0000	170.0	14.27%	7525.3	15.62%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.149e-02	1.0000	83.0	6.97%	3845.9	7.98%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-9.095e-02	1.0000	113.0	9.49%	5131.1	10.65%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-8.982e-02	1.0000	87.0	7.30%	4022.0	8.35%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.348e-02	1.0000	1.0	0.08%	102.0	0.21%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.194e-02	1.0000	125.0	10.50%	5666.6	11.76%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.965e-02	1.0000	96.0	8.06%	4433.1	9.20%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.463e-02	1.0000	21.0	1.76%	1130.2	2.35%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-7.455e-02	1.0000	64.0	5.37%	3059.9	6.35%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.812e-02	1.0000	39.0	3.27%	1965.2	4.08%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.795e-02	1.0000	1.0	0.08%	110.0	0.23%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.635e-02	1.0000	71.0	5.96%	3386.1	7.03%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-5.980e-02	1.0000	77.0	6.47%	3667.9	7.61%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.746e-02	1.0000	29.0	2.43%	1532.8	3.18%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.122e-02	1.0000	100.0	8.40%	4696.3	9.75%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.003e-02	1.0000	5.0	0.42%	371.4	0.77%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-4.749e-02	1.0000	51.0	4.28%	2557.9	5.31%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.495e-02	1.0000	37.0	3.11%	1931.6	4.01%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.314e-02	1.0000	12.0	1.01%	750.0	1.56%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-3.836e-02	1.0000	103.0	8.65%	4883.1	10.14%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.531e-02	1.0000	270.0	22.67%	11988.9	24.89%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.430e-02	1.0000	41.0	3.44%	2150.9	4.47%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-3.426e-02	1.0000	6.0	0.50%	451.0	0.94%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.281e-02	1.0000	7.0	0.59%	509.7	1.06%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.113e-02	1.0000	195.0	16.37%	8868.8	18.41%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-3.107e-02	1.0000	16.0	1.34%	978.6	2.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.240e-02	1.0000	47.0	3.95%	2482.0	5.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.106e-02	1.0000	7.0	0.59%	539.5	1.12%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.925e-02	1.0000	15.0	1.26%	970.9	2.02%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.627e-02	1.0000	22.0	1.85%	1336.4	2.77%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.319e-02	1.0000	105.0	8.82%	5165.3	10.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.284e-02	1.0000	17.0	1.43%	1107.3	2.30%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.191e-02	1.0000	129.0	10.83%	6236.1	12.95%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.316e-03	1.0000	6.0	0.50%	533.2	1.11%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-9.050e-03	1.0000	16.0	1.34%	1085.9	2.25%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.343e-03	1.0000	77.0	6.47%	4006.1	8.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.386e-03	1.0000	46.0	3.86%	2592.8	5.38%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.618e-03	1.0000	114.0	9.57%	5737.0	11.91%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.134e-03	1.0000	2.0	0.17%	321.6	0.67%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.883e-03	1.0000	74.0	6.21%	3997.1	8.30%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.875e-03	1.0000	73.0	6.13%	4007.0	8.32%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.860e-04	1.0000	14.0	1.18%	1180.3	2.45%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.600e-05	1.0000	44.0	3.69%	3036.6	6.30%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	57.0	4.79%	5043.0	10.47%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	106.0	8.90%	7733.1	16.05%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	123.0	10.33%	9153.3	19.00%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	8.3	0.02%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	16.6	0.03%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	113.5	0.24%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	400.3	0.83%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.9	0.01%