Information for 1-TGCCAAGARA (Motif 1)

C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
Reverse Opposite:
C A G T A G C T G C A T G A T C G A C T G C A T A C T G A T C G T G A C G C T A
p-value:1e-58
log p-value:-1.343e+02
Information Content per bp:1.593
Number of Target Sequences with motif582.0
Percentage of Target Sequences with motif43.76%
Number of Background Sequences with motif11226.7
Percentage of Background Sequences with motif23.55%
Average Position of motif in Targets101.4 +/- 53.4bp
Average Position of motif in Background100.3 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAAGARA
NNTGCCAAGNN-
 A C G T A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGARA
GGTGCCAAGT--
 A C G T A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGARA
CGTGCCAAG---
 A C G T A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGARA
TTGCCAAG---
 A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGCCAAGARA------
TGCCAAAATAAACANN
 C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGARA
ATGCCAACC--
 A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGCCAAGARA
ACTAGCCAATCA-
 A C G T A C G T A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGARA
ATTTCCAAGAA-
 A C G T A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGARA
ATGCCCACC--
 A C G T C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGCCAAGARA
TGCCAGCB--
 C G A T A C T G T A G C T G A C C G T A C T G A C T A G C G T A T C G A G T C A
G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T A C G T