Information for 12-TTAAGCCT (Motif 19)

A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T
Reverse Opposite:
C G T A A C T G A C T G A G T C A G C T A C G T C G T A G T C A
p-value:1e-7
log p-value:-1.796e+01
Information Content per bp:1.778
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif12.71%
Number of Background Sequences with motif3916.4
Percentage of Background Sequences with motif8.21%
Average Position of motif in Targets98.4 +/- 56.6bp
Average Position of motif in Background99.4 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TTAAGCCT-
-TAATCCCN
 A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T A C G T
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTAAGCCT-------
TTAACCCTTTVNKKN
 A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G A C T C G T A G C T A G T A C G A T C G T A C G A C T A G C T A C G T T G A C C G T A C A G T A C G T A T G C

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTAAGCCT
TTAATCCC
 A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTAAGCCT
CTTAATCCC
 A C G T A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTAAGCCT-
NYTAATCCYB
 A C G T A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T A C G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TTAAGCCT
TTAATCCT
 A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAGCCT----
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAGCCT----
GANNATTAATCCCTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTAAGCCT
GCTAATCC-
 A C G T A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCCT-----
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C T A G T G A C A G T C G C A T A C G T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A