Information for 2-YGCCACCTDSTG (Motif 3)

G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G
Reverse Opposite:
A G T C C G T A T A G C G A T C G T C A A C T G T C A G A C G T A C T G A C T G A G T C C T A G
p-value:1e-41
log p-value:-9.484e+01
Information Content per bp:1.791
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif315.6
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets102.3 +/- 47.4bp
Average Position of motif in Background109.2 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----YGCCACCTDSTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---YGCCACCTDSTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.84
Offset:-6
Orientation:forward strand
Alignment:------YGCCACCTDSTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCFL/MA1102.1/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--YGCCACCTDSTG
NGTGCCCCCTGGNG
 A C G T A C G T G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:YGCCACCTDSTG
-GCCATCTGTT-
 G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:YGCCACCTDSTG---
--CCACCTGTTGCAT
 G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

SCRT1/MA0743.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:YGCCACCTDSTG---
ANCCACCTGTTGCNC
 G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T A C G T A C G T
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YGCCACCTDSTG---
GGCCYCCTGCTGDGH
 G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YGCCACCTDSTG
SNGCACCTGCHS
 G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:YGCCACCTDSTG-
---CACCTGTTGC
 G A T C C T A G G T A C A G T C G T C A A G T C A G T C C A G T C T A G A T C G C G A T A C T G A C G T
A C G T A C G T A C G T G T A C C T G A G A T C G A T C A C G T A C T G C G A T C A G T T C A G T G A C