Information for 5-CCATAAATCW (Motif 5)

G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
Reverse Opposite:
C G T A T C A G C G T A A G C T C A G T G A C T C T G A A G C T C T A G C T A G
p-value:1e-19
log p-value:-4.511e+01
Information Content per bp:1.699
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif7.37%
Number of Background Sequences with motif1201.9
Percentage of Background Sequences with motif2.52%
Average Position of motif in Targets105.0 +/- 52.9bp
Average Position of motif in Background99.2 +/- 62.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCW-
GGCCATAAATCAC
 A C G T A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCW
GGCCATAAATCA
 A C G T A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CCATAAATCW
GCCATAAATCA
 A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CCATAAATCW-
NCYATMAATCAY
 A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCW
NGYCATAAAWCH
 A C G T A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCATAAATCW
TCATCAATCA
 G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCATAAATCW
RGCCATYAATCA
 A C G T A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCATAAATCW
YCATCMATCA
 G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CCATAAATCW
GCAATAAAA--
 A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CCATAAATCW
KGCCATAAAA--
 A C G T A C G T G A T C G A T C T C G A G A C T C T G A G T C A T C G A G A C T A G T C G C A T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T