Information for 12-TCTGVGCAGGCT (Motif 9)

A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
Reverse Opposite:
C T G A A T C G G A T C A G T C C G A T T A C G A T G C A G T C T A G C C G T A T A C G G T C A
p-value:1e-15
log p-value:-3.587e+01
Information Content per bp:1.664
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif4.96%
Number of Background Sequences with motif723.8
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets95.5 +/- 46.3bp
Average Position of motif in Background97.8 +/- 64.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCTGVGCAGGCT
WDNCTGGGCA----
 A C G T A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:2
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TCTGVGCAGGCT
VCCTCTCTGDDY-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TCTGVGCAGGCT
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTGVGCAGGCT
DCTCAGCAGG--
 A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

GFX(?)/Promoter/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTGVGCAGGCT
TCTCGCGAGAAT
 A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCTGVGCAGGCT-
-CACAGCAGGGGG
 A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCTGVGCAGGCT
CTGTCTGG-------
 A C G T A C G T A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCTGVGCAGGCT
CYWSTGGTCARA--
 A C G T A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------TCTGVGCAGGCT
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCTGVGCAGGCT
TACTTGGCAGA--
 A C G T A C G T A T G C C G A T A T C G T C A G T A C G A T G C C G T A A C T G C T A G T A G C G A C T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T