Information for 18-AATATGAGAA (Motif 21)

C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
Reverse Opposite:
A G C T A C G T A G T C C G A T A T G C G C T A C G A T C G T A A G C T A C G T
p-value:1e-6
log p-value:-1.409e+01
Information Content per bp:1.830
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif180.8
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets103.8 +/- 58.5bp
Average Position of motif in Background101.4 +/- 54.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AATATGAGAA
GWAAYHTGABMC
 A C G T A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATATGAGAA
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATATGAGAA
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATATGAGAA
AAGGTGTKAA
 C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATATGAGAA--
AATATGCAAATT
 C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A A C G T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AATATGAGAA--
CATACAATACGAAATAA
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

POU1F1/MA0784.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATATGAGAA----
AATATGCAAATTAG
 C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

SIX1/MA1118.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATATGAGAA
GTAACCTGATA-
 A C G T A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATATGAGAA
GWAAYHTGAKMC
 A C G T A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AATATGAGAA---
AAATAAGAAAAAAC
 A C G T C G T A C T G A G C A T C G T A C G A T A T C G C G T A C T A G T G C A T C G A A C G T A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C