Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 922)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47875)	% of Background Sequences with Motif
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-84	-1.945e+02	0.0000	278.0	30.15%	3834.8	8.01%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-79	-1.836e+02	0.0000	335.0	36.33%	5764.9	12.04%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-79	-1.828e+02	0.0000	154.0	16.70%	1128.9	2.36%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-73	-1.696e+02	0.0000	219.0	23.75%	2680.1	5.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-64	-1.487e+02	0.0000	308.0	33.41%	5714.6	11.94%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-64	-1.483e+02	0.0000	245.0	26.57%	3757.1	7.85%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-61	-1.413e+02	0.0000	386.0	41.87%	8728.6	18.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-60	-1.382e+02	0.0000	337.0	36.55%	7004.6	14.63%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-56	-1.294e+02	0.0000	351.0	38.07%	7788.2	16.27%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-50	-1.167e+02	0.0000	261.0	28.31%	4991.2	10.43%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-46	-1.075e+02	0.0000	284.0	30.80%	6048.4	12.63%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-45	-1.041e+02	0.0000	85.0	9.22%	585.1	1.22%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-43	-1.000e+02	0.0000	248.0	26.90%	5027.5	10.50%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-33	-7.631e+01	0.0000	113.0	12.26%	1513.9	3.16%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-32	-7.577e+01	0.0000	88.0	9.54%	929.5	1.94%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-32	-7.477e+01	0.0000	89.0	9.65%	964.6	2.02%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-32	-7.406e+01	0.0000	112.0	12.15%	1527.8	3.19%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-31	-7.361e+01	0.0000	257.0	27.87%	6254.2	13.06%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-29	-6.763e+01	0.0000	169.0	18.33%	3357.1	7.01%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-23	-5.298e+01	0.0000	139.0	15.08%	2823.7	5.90%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-21	-4.868e+01	0.0000	254.0	27.55%	7283.7	15.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-20	-4.645e+01	0.0000	172.0	18.66%	4207.0	8.79%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-17	-4.132e+01	0.0000	97.0	10.52%	1832.6	3.83%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-17	-4.125e+01	0.0000	136.0	14.75%	3126.2	6.53%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-16	-3.767e+01	0.0000	188.0	20.39%	5229.0	10.92%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-15	-3.563e+01	0.0000	78.0	8.46%	1409.2	2.94%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-14	-3.254e+01	0.0000	95.0	10.30%	2043.8	4.27%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-13	-3.154e+01	0.0000	59.0	6.40%	958.7	2.00%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-12	-2.931e+01	0.0000	90.0	9.76%	1990.9	4.16%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-12	-2.800e+01	0.0000	104.0	11.28%	2529.4	5.28%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-12	-2.783e+01	0.0000	82.0	8.89%	1775.6	3.71%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-11	-2.555e+01	0.0000	141.0	15.29%	4047.0	8.45%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-11	-2.540e+01	0.0000	110.0	11.93%	2866.6	5.99%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-10	-2.482e+01	0.0000	63.0	6.83%	1257.2	2.63%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-10	-2.478e+01	0.0000	99.0	10.74%	2491.3	5.20%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-9	-2.101e+01	0.0000	47.0	5.10%	874.5	1.83%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-9	-2.078e+01	0.0000	93.0	10.09%	2461.9	5.14%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-8	-2.058e+01	0.0000	81.0	8.79%	2031.0	4.24%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-8	-2.004e+01	0.0000	34.0	3.69%	524.7	1.10%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-8	-1.996e+01	0.0000	33.0	3.58%	499.2	1.04%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-8	-1.946e+01	0.0000	112.0	12.15%	3264.4	6.82%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-7	-1.771e+01	0.0000	35.0	3.80%	606.5	1.27%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.759e+01	0.0000	86.0	9.33%	2364.1	4.94%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-7	-1.737e+01	0.0000	239.0	25.92%	8910.0	18.61%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-7	-1.729e+01	0.0000	103.0	11.17%	3042.1	6.35%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-7	-1.672e+01	0.0000	40.0	4.34%	784.0	1.64%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-7	-1.630e+01	0.0000	26.0	2.82%	388.3	0.81%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-6	-1.571e+01	0.0000	98.0	10.63%	2944.4	6.15%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-6	-1.502e+01	0.0000	53.0	5.75%	1278.4	2.67%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-6	-1.437e+01	0.0000	245.0	26.57%	9523.1	19.89%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-6	-1.387e+01	0.0000	50.0	5.42%	1222.6	2.55%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-5	-1.378e+01	0.0000	156.0	16.92%	5545.8	11.58%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.364e+01	0.0000	90.0	9.76%	2761.6	5.77%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.309e+01	0.0000	49.0	5.31%	1221.4	2.55%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-5	-1.302e+01	0.0000	17.0	1.84%	220.2	0.46%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-5	-1.301e+01	0.0000	152.0	16.49%	5444.6	11.37%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-5	-1.244e+01	0.0000	204.0	22.13%	7854.8	16.41%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-5	-1.211e+01	0.0000	63.0	6.83%	1793.7	3.75%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-5	-1.187e+01	0.0001	49.0	5.31%	1280.0	2.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-5	-1.176e+01	0.0001	182.0	19.74%	6926.2	14.47%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.173e+01	0.0001	64.0	6.94%	1855.0	3.87%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-5	-1.172e+01	0.0001	62.0	6.72%	1778.0	3.71%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.160e+01	0.0001	98.0	10.63%	3243.7	6.78%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-4	-1.114e+01	0.0001	525.0	56.94%	23942.9	50.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.067e+01	0.0002	84.0	9.11%	2733.0	5.71%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-4	-9.963e+00	0.0003	48.0	5.21%	1342.4	2.80%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-4	-9.524e+00	0.0005	36.0	3.90%	919.5	1.92%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-3	-9.156e+00	0.0007	16.0	1.74%	271.6	0.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-8.972e+00	0.0008	15.0	1.63%	247.4	0.52%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-8.906e+00	0.0008	63.0	6.83%	2004.8	4.19%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.548e+00	0.0012	93.0	10.09%	3303.4	6.90%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.470e+00	0.0012	48.0	5.21%	1432.2	2.99%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-3	-8.347e+00	0.0014	91.0	9.87%	3237.0	6.76%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-8.269e+00	0.0015	63.0	6.83%	2053.8	4.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-7.690e+00	0.0026	103.0	11.17%	3834.8	8.01%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-3	-7.538e+00	0.0030	76.0	8.24%	2666.0	5.57%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-7.384e+00	0.0035	34.0	3.69%	955.2	2.00%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-7.319e+00	0.0036	30.0	3.25%	808.2	1.69%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-3	-7.306e+00	0.0036	42.0	4.56%	1271.2	2.66%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-6.953e+00	0.0051	71.0	7.70%	2507.3	5.24%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-6.905e+00	0.0053	203.0	22.02%	8599.5	17.96%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-2	-6.870e+00	0.0054	179.0	19.41%	7459.8	15.58%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-6.810e+00	0.0057	24.0	2.60%	613.2	1.28%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-6.623e+00	0.0068	88.0	9.54%	3289.0	6.87%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-6.463e+00	0.0079	119.0	12.91%	4713.8	9.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-6.393e+00	0.0083	101.0	10.95%	3900.3	8.15%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-2	-6.364e+00	0.0085	121.0	13.12%	4819.4	10.07%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-6.318e+00	0.0088	133.0	14.43%	5382.8	11.24%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-2	-6.249e+00	0.0093	178.0	19.31%	7517.0	15.70%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.188e+00	0.0098	82.0	8.89%	3071.9	6.42%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-2	-6.094e+00	0.0106	130.0	14.10%	5276.9	11.02%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-2	-6.090e+00	0.0106	179.0	19.41%	7593.1	15.86%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.847e+00	0.0133	15.0	1.63%	338.9	0.71%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.836e+00	0.0133	121.0	13.12%	4896.2	10.23%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-2	-5.715e+00	0.0149	12.0	1.30%	245.0	0.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.682e+00	0.0152	169.0	18.33%	7188.8	15.02%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-5.665e+00	0.0153	339.0	36.77%	15563.8	32.51%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.546e+00	0.0171	40.0	4.34%	1318.2	2.75%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.485e+00	0.0179	35.0	3.80%	1117.3	2.33%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-5.462e+00	0.0182	53.0	5.75%	1876.0	3.92%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-5.355e+00	0.0200	76.0	8.24%	2902.2	6.06%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.239e+00	0.0223	87.0	9.44%	3415.1	7.13%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-5.191e+00	0.0231	37.0	4.01%	1222.9	2.55%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.014e+00	0.0273	21.0	2.28%	593.3	1.24%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-2	-5.000e+00	0.0275	17.0	1.84%	444.3	0.93%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-4.963e+00	0.0282	74.0	8.03%	2861.3	5.98%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-4.899e+00	0.0298	63.0	6.83%	2375.9	4.96%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-4.837e+00	0.0314	46.0	4.99%	1635.1	3.42%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-4.822e+00	0.0316	61.0	6.62%	2295.2	4.79%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-4.718e+00	0.0348	21.0	2.28%	610.6	1.28%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-2	-4.712e+00	0.0348	67.0	7.27%	2577.7	5.38%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-4.694e+00	0.0350	13.0	1.41%	314.6	0.66%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.655e+00	0.0360	189.0	20.50%	8359.7	17.46%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.549e+00	0.0397	52.0	5.64%	1928.0	4.03%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-4.524e+00	0.0404	32.0	3.47%	1068.8	2.23%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.519e+00	0.0404	29.0	3.15%	944.0	1.97%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-4.512e+00	0.0404	16.0	1.74%	431.4	0.90%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.484e+00	0.0409	20.0	2.17%	585.1	1.22%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-4.385e+00	0.0448	58.0	6.29%	2214.0	4.62%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.293e+00	0.0487	5.0	0.54%	72.5	0.15%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-4.277e+00	0.0491	9.0	0.98%	193.0	0.40%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-4.239e+00	0.0506	3.0	0.33%	27.0	0.06%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-4.238e+00	0.0506	313.0	33.95%	14626.9	30.55%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-4.141e+00	0.0549	14.0	1.52%	375.6	0.78%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.138e+00	0.0549	208.0	22.56%	9411.9	19.66%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.081e+00	0.0574	14.0	1.52%	378.7	0.79%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-4.021e+00	0.0604	16.0	1.74%	457.2	0.95%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-1	-3.922e+00	0.0662	159.0	17.25%	7060.1	14.75%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.859e+00	0.0700	6.0	0.65%	110.6	0.23%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-3.845e+00	0.0704	51.0	5.53%	1965.0	4.10%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.823e+00	0.0715	95.0	10.30%	4005.6	8.37%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-3.694e+00	0.0806	28.0	3.04%	971.0	2.03%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.643e+00	0.0842	147.0	15.94%	6539.0	13.66%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.520e+00	0.0945	88.0	9.54%	3728.8	7.79%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.457e+00	0.1000	4.0	0.43%	61.3	0.13%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.269e+00	0.1198	26.0	2.82%	923.5	1.93%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.232e+00	0.1234	8.0	0.87%	197.3	0.41%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.178e+00	0.1293	27.0	2.93%	975.6	2.04%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-3.137e+00	0.1336	112.0	12.15%	4954.1	10.35%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-3.073e+00	0.1415	54.0	5.86%	2208.1	4.61%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-1	-3.042e+00	0.1449	8.0	0.87%	205.9	0.43%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.028e+00	0.1459	104.0	11.28%	4591.4	9.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.964e+00	0.1545	56.0	6.07%	2319.0	4.84%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.892e+00	0.1648	17.0	1.84%	572.2	1.20%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.889e+00	0.1648	108.0	11.71%	4816.5	10.06%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.854e+00	0.1689	12.0	1.30%	369.8	0.77%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.789e+00	0.1790	11.0	1.19%	333.5	0.70%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.718e+00	0.1909	38.0	4.12%	1521.9	3.18%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.693e+00	0.1945	10.0	1.08%	299.8	0.63%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.669e+00	0.1978	98.0	10.63%	4381.1	9.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.668e+00	0.1978	186.0	20.17%	8724.1	18.22%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-2.648e+00	0.1994	68.0	7.38%	2940.4	6.14%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.615e+00	0.2047	121.0	13.12%	5519.0	11.53%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.612e+00	0.2047	2.0	0.22%	23.6	0.05%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-2.601e+00	0.2049	190.0	20.61%	8945.9	18.69%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.521e+00	0.2206	87.0	9.44%	3881.1	8.11%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.505e+00	0.2226	67.0	7.27%	2920.5	6.10%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.494e+00	0.2237	10.0	1.08%	311.2	0.65%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-2.429e+00	0.2373	7.0	0.76%	196.9	0.41%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.419e+00	0.2381	60.0	6.51%	2602.7	5.44%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.416e+00	0.2381	22.0	2.39%	833.7	1.74%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.348e+00	0.2526	111.0	12.04%	5097.7	10.65%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-2.340e+00	0.2530	10.0	1.08%	321.5	0.67%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.330e+00	0.2540	56.0	6.07%	2428.2	5.07%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.273e+00	0.2671	7.0	0.76%	204.9	0.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.263e+00	0.2683	11.0	1.19%	368.4	0.77%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.230e+00	0.2757	42.0	4.56%	1781.5	3.72%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.160e+00	0.2938	61.0	6.62%	2702.6	5.65%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.156e+00	0.2938	19.0	2.06%	727.1	1.52%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.146e+00	0.2946	111.0	12.04%	5153.2	10.76%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.131e+00	0.2971	156.0	16.92%	7398.2	15.45%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.117e+00	0.2996	372.0	40.35%	18388.0	38.41%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.062e+00	0.3148	149.0	16.16%	7071.9	14.77%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.045e+00	0.3184	112.0	12.15%	5233.0	10.93%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.019e+00	0.3247	13.0	1.41%	474.8	0.99%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.014e+00	0.3247	5.0	0.54%	139.7	0.29%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.012e+00	0.3247	2.0	0.22%	33.0	0.07%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.009e+00	0.3247	7.0	0.76%	219.1	0.46%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.937e+00	0.3446	27.0	2.93%	1122.5	2.34%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.936e+00	0.3446	28.0	3.04%	1169.9	2.44%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.928e+00	0.3446	94.0	10.20%	4374.2	9.14%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.870e+00	0.3626	27.0	2.93%	1132.6	2.37%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.845e+00	0.3698	314.0	34.06%	15537.2	32.46%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.790e+00	0.3885	81.0	8.79%	3770.9	7.88%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.749e+00	0.4023	227.0	24.62%	11135.9	23.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.744e+00	0.4023	247.0	26.79%	12157.6	25.40%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.731e+00	0.4052	425.0	46.10%	21314.5	44.53%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.726e+00	0.4052	121.0	13.12%	5783.3	12.08%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.713e+00	0.4082	48.0	5.21%	2168.4	4.53%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.705e+00	0.4093	119.0	12.91%	5690.9	11.89%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.701e+00	0.4093	21.0	2.28%	875.7	1.83%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.682e+00	0.4146	17.0	1.84%	691.5	1.44%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.679e+00	0.4146	46.0	4.99%	2078.3	4.34%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.676e+00	0.4146	50.0	5.42%	2274.0	4.75%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.663e+00	0.4162	42.0	4.56%	1887.1	3.94%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.630e+00	0.4281	55.0	5.97%	2530.1	5.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.622e+00	0.4291	73.0	7.92%	3421.6	7.15%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.610e+00	0.4319	13.0	1.41%	515.5	1.08%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.604e+00	0.4327	21.0	2.28%	889.6	1.86%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.581e+00	0.4405	246.0	26.68%	12184.3	25.45%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.518e+00	0.4665	37.0	4.01%	1674.7	3.50%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.507e+00	0.4694	1.0	0.11%	14.0	0.03%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.500e+00	0.4702	8.0	0.87%	299.4	0.63%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.491e+00	0.4723	65.0	7.05%	3061.4	6.40%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.489e+00	0.4723	140.0	15.18%	6830.9	14.27%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.439e+00	0.4929	84.0	9.11%	4026.7	8.41%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.427e+00	0.4961	112.0	12.15%	5439.5	11.36%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.413e+00	0.5007	31.0	3.36%	1403.5	2.93%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.408e+00	0.5011	149.0	16.16%	7321.0	15.29%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.388e+00	0.5084	104.0	11.28%	5051.0	10.55%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.365e+00	0.5178	65.0	7.05%	3098.2	6.47%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.358e+00	0.5193	89.0	9.65%	4305.2	8.99%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.327e+00	0.5330	23.0	2.49%	1030.7	2.15%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.317e+00	0.5357	159.0	17.25%	7871.5	16.44%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.284e+00	0.5510	81.0	8.79%	3928.3	8.21%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.279e+00	0.5515	30.0	3.25%	1382.8	2.89%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.254e+00	0.5630	18.0	1.95%	800.3	1.67%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.250e+00	0.5630	32.0	3.47%	1487.5	3.11%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.249e+00	0.5630	12.0	1.30%	512.5	1.07%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.226e+00	0.5711	21.0	2.28%	951.2	1.99%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.204e+00	0.5809	9.0	0.98%	375.2	0.78%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.193e+00	0.5845	126.0	13.67%	6248.0	13.05%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.192e+00	0.5845	10.0	1.08%	424.8	0.89%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.192e+00	0.5845	10.0	1.08%	424.8	0.89%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.183e+00	0.5845	22.0	2.39%	1008.6	2.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.180e+00	0.5845	2.0	0.22%	58.2	0.12%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.159e+00	0.5919	89.0	9.65%	4380.6	9.15%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.119e+00	0.6133	20.0	2.17%	922.3	1.93%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.113e+00	0.6139	8.0	0.87%	338.2	0.71%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.109e+00	0.6141	11.0	1.19%	483.9	1.01%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.104e+00	0.6141	104.0	11.28%	5166.4	10.79%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.104e+00	0.6141	48.0	5.21%	2325.4	4.86%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.098e+00	0.6141	10.0	1.08%	436.9	0.91%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.089e+00	0.6154	7.0	0.76%	293.2	0.61%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.081e+00	0.6178	124.0	13.45%	6198.7	12.95%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.076e+00	0.6185	17.0	1.84%	782.8	1.64%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.073e+00	0.6185	105.0	11.39%	5231.8	10.93%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.028e+00	0.6435	26.0	2.82%	1240.4	2.59%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.014e+00	0.6494	8.0	0.87%	350.7	0.73%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.852e-01	0.6658	75.0	8.13%	3738.8	7.81%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.829e-01	0.6658	76.0	8.24%	3790.1	7.92%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-9.620e-01	0.6758	162.0	17.57%	8212.5	17.16%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.527e-01	0.6793	163.0	17.68%	8269.6	17.27%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.443e-01	0.6823	89.0	9.65%	4472.3	9.34%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.396e-01	0.6827	175.0	18.98%	8895.6	18.58%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.373e-01	0.6827	3.0	0.33%	117.5	0.25%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-9.296e-01	0.6839	46.0	4.99%	2280.9	4.76%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-9.291e-01	0.6839	38.0	4.12%	1873.7	3.91%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.161e-01	0.6877	32.0	3.47%	1572.6	3.29%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.960e-01	0.6988	74.0	8.03%	3725.7	7.78%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-8.776e-01	0.7090	134.0	14.53%	6820.3	14.25%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.748e-01	0.7090	1.0	0.11%	28.7	0.06%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.703e-01	0.7090	60.0	6.51%	3018.0	6.30%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.556e-01	0.7162	5.0	0.54%	222.3	0.46%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.548e-01	0.7162	9.0	0.98%	422.0	0.88%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.540e-01	0.7162	15.0	1.63%	725.6	1.52%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.416e-01	0.7178	18.0	1.95%	880.0	1.84%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.412e-01	0.7178	36.0	3.90%	1799.6	3.76%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.336e-01	0.7180	140.0	15.18%	7156.2	14.95%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.297e-01	0.7180	9.0	0.98%	426.3	0.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.297e-01	0.7180	9.0	0.98%	426.3	0.89%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-8.183e-01	0.7207	69.0	7.48%	3503.9	7.32%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.114e-01	0.7229	9.0	0.98%	429.7	0.90%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.096e-01	0.7229	61.0	6.62%	3095.3	6.47%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.905e-01	0.7326	36.0	3.90%	1816.9	3.80%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.825e-01	0.7357	18.0	1.95%	895.0	1.87%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.561e-01	0.7526	70.0	7.59%	3584.1	7.49%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.404e-01	0.7617	41.0	4.45%	2092.4	4.37%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-7.373e-01	0.7617	211.0	22.89%	10898.5	22.77%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.224e-01	0.7697	29.0	3.15%	1478.2	3.09%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.143e-01	0.7731	47.0	5.10%	2414.0	5.04%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-7.063e-01	0.7765	84.0	9.11%	4335.5	9.06%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.057e-01	0.7765	16.0	1.74%	810.0	1.69%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.033e-01	0.7765	129.0	13.99%	6671.2	13.94%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.870e-01	0.7830	11.0	1.19%	555.3	1.16%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.388e-01	0.8187	97.0	10.52%	5051.1	10.55%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.251e-01	0.8270	110.0	11.93%	5737.2	11.98%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.211e-01	0.8273	1.0	0.11%	40.8	0.09%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.002e-01	0.8418	22.0	2.39%	1154.7	2.41%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.945e-01	0.8435	107.0	11.61%	5602.0	11.70%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-5.807e-01	0.8522	38.0	4.12%	2002.6	4.18%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-5.701e-01	0.8582	55.0	5.97%	2899.4	6.06%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.608e-01	0.8632	8.0	0.87%	424.4	0.89%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.592e-01	0.8632	40.0	4.34%	2117.8	4.42%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-5.590e-01	0.8632	71.0	7.70%	3744.3	7.82%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.537e-01	0.8632	68.0	7.38%	3590.6	7.50%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.525e-01	0.8632	31.0	3.36%	1646.5	3.44%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-5.405e-01	0.8656	184.0	19.96%	9664.7	20.19%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.339e-01	0.8683	31.0	3.36%	1654.4	3.46%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-5.180e-01	0.8792	95.0	10.30%	5030.6	10.51%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.934e-01	0.8980	2.0	0.22%	107.9	0.23%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.860e-01	0.9016	175.0	18.98%	9247.4	19.32%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.853e-01	0.9016	4.0	0.43%	221.4	0.46%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-4.850e-01	0.9016	9.0	0.98%	496.3	1.04%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-4.802e-01	0.9016	34.0	3.69%	1838.4	3.84%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.799e-01	0.9016	17.0	1.84%	930.8	1.94%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-4.706e-01	0.9016	68.0	7.38%	3644.6	7.61%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.554e-01	0.9109	85.0	9.22%	4552.5	9.51%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.390e-01	0.9228	80.0	8.68%	4301.7	8.99%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.187e-01	0.9386	186.0	20.17%	9895.5	20.67%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-4.128e-01	0.9410	106.0	11.50%	5697.0	11.90%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.112e-01	0.9410	8.0	0.87%	461.3	0.96%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.089e-01	0.9410	164.0	17.79%	8752.0	18.28%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.060e-01	0.9410	40.0	4.34%	2199.0	4.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.023e-01	0.9410	147.0	15.94%	7866.7	16.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.973e-01	0.9410	2.0	0.22%	120.6	0.25%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.971e-01	0.9410	269.0	29.18%	14265.8	29.80%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.949e-01	0.9410	25.0	2.71%	1398.7	2.92%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.932e-01	0.9410	26.0	2.82%	1453.6	3.04%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.857e-01	0.9410	81.0	8.79%	4398.4	9.19%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.826e-01	0.9410	7.0	0.76%	414.0	0.86%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.723e-01	0.9454	224.0	24.30%	11944.9	24.95%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-3.645e-01	0.9498	16.0	1.74%	922.0	1.93%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.527e-01	0.9580	12.0	1.30%	704.2	1.47%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.419e-01	0.9653	21.0	2.28%	1207.1	2.52%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.418e-01	0.9653	19.0	2.06%	1097.6	2.29%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.372e-01	0.9653	8.0	0.87%	484.2	1.01%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.321e-01	0.9656	72.0	7.81%	3967.5	8.29%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.242e-01	0.9701	27.0	2.93%	1546.7	3.23%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.236e-01	0.9701	15.0	1.63%	884.2	1.85%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.212e-01	0.9701	37.0	4.01%	2093.5	4.37%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.151e-01	0.9701	7.0	0.76%	434.3	0.91%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.148e-01	0.9701	13.0	1.41%	776.6	1.62%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-3.116e-01	0.9701	255.0	27.66%	13657.5	28.53%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.089e-01	0.9701	16.0	1.74%	947.4	1.98%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.079e-01	0.9701	11.0	1.19%	666.8	1.39%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-3.059e-01	0.9701	139.0	15.08%	7558.2	15.79%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.052e-01	0.9701	3.0	0.33%	199.6	0.42%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.954e-01	0.9701	68.0	7.38%	3788.6	7.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.766e-01	0.9836	39.0	4.23%	2237.0	4.67%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.747e-01	0.9836	1.0	0.11%	74.9	0.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.553e-01	0.9987	162.0	17.57%	8849.1	18.49%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.552e-01	0.9987	84.0	9.11%	4692.1	9.80%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.512e-01	0.9987	2.0	0.22%	148.8	0.31%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.479e-01	0.9987	208.0	22.56%	11293.7	23.59%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.439e-01	0.9987	60.0	6.51%	3410.6	7.12%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.427e-01	0.9987	46.0	4.99%	2649.4	5.53%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-2.400e-01	0.9987	56.0	6.07%	3197.8	6.68%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.361e-01	0.9987	99.0	10.74%	5522.4	11.54%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.305e-01	0.9997	47.0	5.10%	2716.5	5.67%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.240e-01	1.0000	401.0	43.49%	21452.4	44.81%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.230e-01	1.0000	4.0	0.43%	286.5	0.60%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.193e-01	1.0000	73.0	7.92%	4144.0	8.66%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.167e-01	1.0000	29.0	3.15%	1736.0	3.63%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.066e-01	1.0000	13.0	1.41%	834.0	1.74%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.991e-01	1.0000	16.0	1.74%	1013.1	2.12%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.991e-01	1.0000	38.0	4.12%	2253.1	4.71%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.905e-01	1.0000	81.0	8.79%	4619.0	9.65%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.895e-01	1.0000	125.0	13.56%	6990.4	14.60%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.724e-01	1.0000	46.0	4.99%	2728.5	5.70%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.644e-01	1.0000	109.0	11.82%	6177.8	12.91%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.605e-01	1.0000	23.0	2.49%	1450.0	3.03%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.558e-01	1.0000	77.0	8.35%	4457.3	9.31%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.551e-01	1.0000	165.0	17.90%	9201.3	19.22%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.550e-01	1.0000	133.0	14.43%	7488.5	15.64%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.513e-01	1.0000	3.0	0.33%	250.1	0.52%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.460e-01	1.0000	38.0	4.12%	2317.4	4.84%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.446e-01	1.0000	45.0	4.88%	2711.9	5.67%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.401e-01	1.0000	67.0	7.27%	3937.6	8.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.395e-01	1.0000	28.0	3.04%	1759.9	3.68%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.333e-01	1.0000	13.0	1.41%	891.1	1.86%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.161e-01	1.0000	65.0	7.05%	3873.3	8.09%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.154e-01	1.0000	2.0	0.22%	196.2	0.41%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.117e-01	1.0000	10.0	1.08%	729.7	1.52%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.113e-01	1.0000	272.0	29.50%	15010.6	31.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.037e-01	1.0000	31.0	3.36%	1983.5	4.14%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.367e-02	1.0000	38.0	4.12%	2403.9	5.02%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.905e-02	1.0000	2.0	0.22%	212.4	0.44%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.900e-02	1.0000	22.0	2.39%	1483.9	3.10%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-8.888e-02	1.0000	44.0	4.77%	2755.3	5.76%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.673e-02	1.0000	24.0	2.60%	1605.4	3.35%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-8.529e-02	1.0000	63.0	6.83%	3834.7	8.01%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.383e-02	1.0000	4.0	0.43%	364.8	0.76%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-7.934e-02	1.0000	47.0	5.10%	2948.5	6.16%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.928e-02	1.0000	51.0	5.53%	3175.4	6.63%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.692e-02	1.0000	2.0	0.22%	221.3	0.46%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.566e-02	1.0000	7.0	0.76%	577.8	1.21%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-7.300e-02	1.0000	19.0	2.06%	1332.9	2.78%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-7.275e-02	1.0000	125.0	13.56%	7292.9	15.23%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.618e-02	1.0000	178.0	19.31%	10191.7	21.29%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-6.124e-02	1.0000	40.0	4.34%	2596.0	5.42%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-5.707e-02	1.0000	157.0	17.03%	9103.2	19.02%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-5.505e-02	1.0000	184.0	19.96%	10573.0	22.09%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-5.158e-02	1.0000	1.0	0.11%	155.1	0.32%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.961e-02	1.0000	21.0	2.28%	1506.0	3.15%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-4.450e-02	1.0000	43.0	4.66%	2827.9	5.91%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.219e-02	1.0000	150.0	16.27%	8811.1	18.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.099e-02	1.0000	56.0	6.07%	3592.0	7.50%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-4.099e-02	1.0000	168.0	18.22%	9798.1	20.47%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.893e-02	1.0000	3.0	0.33%	345.9	0.72%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-3.768e-02	1.0000	26.0	2.82%	1848.3	3.86%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.585e-02	1.0000	49.0	5.31%	3214.3	6.71%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.560e-02	1.0000	2.0	0.22%	268.5	0.56%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.067e-02	1.0000	2.0	0.22%	277.3	0.58%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.009e-02	1.0000	174.0	18.87%	10213.6	21.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.981e-02	1.0000	285.0	30.91%	16174.0	33.79%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.867e-02	1.0000	10.0	1.08%	871.2	1.82%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.704e-02	1.0000	13.0	1.41%	1076.4	2.25%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.018e-02	1.0000	43.0	4.66%	2961.8	6.19%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.538e-02	1.0000	15.0	1.63%	1268.8	2.65%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.492e-02	1.0000	14.0	1.52%	1205.1	2.52%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.110e-02	1.0000	53.0	5.75%	3651.1	7.63%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-9.923e-03	1.0000	18.0	1.95%	1513.5	3.16%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-8.965e-03	1.0000	29.0	3.15%	2228.1	4.65%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-8.139e-03	1.0000	77.0	8.35%	5108.8	10.67%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.767e-03	1.0000	13.0	1.41%	1232.7	2.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.702e-03	1.0000	4.0	0.43%	588.1	1.23%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.679e-03	1.0000	7.0	0.76%	833.7	1.74%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.360e-03	1.0000	27.0	2.93%	2222.8	4.64%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-2.715e-03	1.0000	2.0	0.22%	420.5	0.88%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.487e-03	1.0000	40.0	4.34%	3083.9	6.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.792e-03	1.0000	121.0	13.12%	7917.2	16.54%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.640e-03	1.0000	2.0	0.22%	449.5	0.94%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.497e-03	1.0000	326.0	35.36%	19178.7	40.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.300e-03	1.0000	3.0	0.33%	564.0	1.18%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.058e-03	1.0000	262.0	28.42%	15830.7	33.07%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.170e-04	1.0000	183.0	19.85%	11743.5	24.53%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.100e-05	1.0000	29.0	3.15%	2949.8	6.16%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	90.0	9.76%	7331.0	15.31%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	38.0	4.12%	4950.1	10.34%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	74.0	8.03%	7624.4	15.93%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	118.0	0.25%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	10.5	0.02%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	275.1	0.57%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	46.6	0.10%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	41.3	0.09%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	68.0	7.38%	9123.3	19.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	6.4	0.01%