Information for 2-GCCCCCTGGTGG (Motif 2)

C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G
Reverse Opposite:
T G A C G T A C C G T A T A G C G A T C T G C A A C T G T C A G A C T G A T C G A T C G G T A C
p-value:1e-27
log p-value:-6.364e+01
Information Content per bp:1.710
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif10.77%
Number of Background Sequences with motif704.1
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets86.2 +/- 58.5bp
Average Position of motif in Background95.8 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.91
Offset:-7
Orientation:forward strand
Alignment:-------GCCCCCTGGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----GCCCCCTGGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----GCCCCCTGGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCFL/MA1102.1/Jaspar

Match Rank:4
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---GCCCCCTGGTGG
NGTGCCCCCTGGNG-
 A C G T A C G T A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTGGTGG--
GGCCYCCTGCTGDGH
 A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCCCCCTGGTGG-
-CCCCCTGCTGTG
 C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTGGTGG--
GACCCCCCGCTGTGC
 A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTGGTGG-
GACCCCCCGCTGTG
 A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0101.1_Zic1_1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTGGTGG-
CACCCCCGGGGGGG
 A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTGGTGG--
CCCCCCCGGGGGGGT
 A C G T C A T G A T G C T A G C T G A C A G T C T A G C A C G T C T A G A T C G G C A T A C T G A C T G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T