Information for 4-TGACAAATGT (Motif 4)

C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T
Reverse Opposite:
T C G A G T A C G T C A A G C T C A G T C A G T A T C G A C G T A G T C G C T A
p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.535
Number of Target Sequences with motif161.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif9039.3
Percentage of Background Sequences with motif18.83%
Average Position of motif in Targets99.1 +/- 53.3bp
Average Position of motif in Background101.3 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF2/MA0797.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGACAAATGT--
TGACAGCTGTCA
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T A C G T
G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

NEUROG2/MA0669.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGACAAATGT-
-GACATATGTT
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

PKNOX2/MA0783.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGACAAATGT--
TGACACCTGTCA
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T A C G T
G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PKNOX1/MA0782.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGACAAATGT--
TGACAGGTGTCA
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T A C G T
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A

TGIF1/MA0796.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGACAAATGT--
TGACAGCTGTCA
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T A C G T
G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGACAAATGT
TTGACAG----
 A C G T C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGACAAATGT
RHTGWCAR----
 A C G T A C G T C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGACAAATGT-
-ACCATATGTT
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T
A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:9
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TGACAAATGT-
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C G T C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGACAAATGT
TGTCANYT--
 C A G T T C A G T G C A T A G C G T C A G T C A T C G A C A G T C A T G A G C T
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T