Information for 6-GTTGGCAGGG (Motif 5)

A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
Reverse Opposite:
A T G C G A T C G T A C C G A T A C T G A T G C G T A C C T G A C G T A T G A C
p-value:1e-10
log p-value:-2.409e+01
Information Content per bp:1.655
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif12.42%
Number of Background Sequences with motif2312.2
Percentage of Background Sequences with motif4.82%
Average Position of motif in Targets104.5 +/- 48.7bp
Average Position of motif in Background99.6 +/- 63.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGGG
NNTTGGCANN-
 A C G T A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAGGG
CTTGGCAA--
 A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGGG
GGTTGGCAT--
 A C G T A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAGGG
NTTGGCANN-
 A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGGCAGGG-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGGG
VGCTGGCA---
 A C G T A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAGGG----
GTTGCCATGGNAAC
 A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTTGGCAGGG
TACTTGGCAGA-
 A C G T A C G T A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTTGGCAGGG
-TTGACAGC-
 A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGCAGGG
CTGTTGCTAGGS
 A C G T A C G T A C T G G C A T G A C T C A T G T A C G T G A C G C T A C A T G C T A G T A C G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G